ID:

dsi_13326

 Coordinate:

3r:10070684-10070750 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-4.5 -4.4 -4.4

Flybase annnotation

exon [3r_10070471_10070683_+]; CDS [3r_10070471_10070683_+]; CDS [3r_10070751_10071568_+]; exon [3r_10070751_10071688_+]; intron [3r_10070684_10070750_+]

No Repeatable elements found

Sense Strand Reads

##################################################-------------------------------------------------------------------##################################################
GCTCGACCTGAACTTTAGCAAGGGCGATCGCATTATGTTCTACACCGCCGGTATGATTCTTTATGTCCACTATGTTCGCGCGTTTATCCGTTTCTGACGCTTTCATTCGTTTCACAGGCGACGCCAGCGTTTCTCTGTTGGGCTACTTGCACGACATTGATTCCGAA
**************************************************.............(((..((.(((.....(((((...........)))))...)))..))...))).************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553486
Makindu_3 day-old ovaries
 SRR553485
Chicharo_3 day-old ovaries
 SRR902008
ovaries
 SRR553488
RT_0-2 hours eggs
 SRR618934
dsim w501 ovaries
 SRR553487
NRT_0-2 hours eggs
 M053
female body
 SRR902009
testis
 O001
Testis
..........................................................................................................................................TGGGCTACTTGCACGACATTGATTCCGA. 28 0 1 11.00 11 5 2 2 1 0 1 0 0 0
..........................................................................................................................................TGGGCTACTTGCACGACATTGAT...... 23 0 1 8.00 8 5 0 0 2 1 0 0 0 0
..........................................................................................................................................TGGGCTACTTGCACGACATTGATTCCGAA 29 0 1 5.00 5 4 1 0 0 0 0 0 0 0
........TGAACTTTAGCAAGGGCGATCGCATTA.................................................................................................................................... 27 0 1 4.00 4 2 1 0 1 0 0 0 0 0
........TGAACTTTAGCAAGGGCGATCGCATT..................................................................................................................................... 26 0 1 3.00 3 2 0 1 0 0 0 0 0 0
..........................................................................................................................................TGGGCTACTTGCACGACATTGATTC.... 25 0 1 3.00 3 2 0 1 0 0 0 0 0 0
...........ACTTTAGCAAGGGCGATCGCATTATG.................................................................................................................................. 26 0 1 2.00 2 0 1 0 0 1 0 0 0 0
....GACCTGAACTTTAGCAAGGGCGAT........................................................................................................................................... 24 0 1 2.00 2 0 0 2 0 0 0 0 0 0
...................................................................................................................................TCTCTGTTGGGCTACTTGCACGACA........... 25 0 1 2.00 2 0 0 0 0 0 0 2 0 0
..............TTAGCAAGGGCGATCGCATTATGTTC............................................................................................................................... 26 0 1 2.00 2 0 0 2 0 0 0 0 0 0
.........................................................................................................................................TTGGGCTACTTGCACGACATTGA....... 23 0 1 2.00 2 1 0 0 0 0 1 0 0 0
........TGAACTTTAGCAAGGGCGATCGCA....................................................................................................................................... 24 0 1 2.00 2 1 0 1 0 0 0 0 0 0
.............................................................................................................TCTCTCAGGCGACGCCA......................................... 17 2 15 1.87 28 5 0 0 7 0 16 0 0 0
........TGAACTTTAGCAAGGGCGATCGCAT...................................................................................................................................... 25 0 1 1.00 1 1 0 0 0 0 0 0 0 0
...................................................................................................................................TCTCTGTTGGGCTACTTGCACG.............. 22 0 1 1.00 1 1 0 0 0 0 0 0 0 0
GCTCGACCTGAACTTTAGCAAGGGC.............................................................................................................................................. 25 0 1 1.00 1 0 1 0 0 0 0 0 0 0
...................................................................................................................................TCTCTGTTGGGCTACTTGCACGA............. 23 0 1 1.00 1 1 0 0 0 0 0 0 0 0
.............TTTAGCAAGGGCGATCGCATTATG.................................................................................................................................. 24 0 1 1.00 1 1 0 0 0 0 0 0 0 0
................AGCAAGGGCGATCGCATTATGTT................................................................................................................................ 23 0 1 1.00 1 1 0 0 0 0 0 0 0 0
.........................GATCGCATTATGTTCTACACCGCCGGC................................................................................................................... 27 1 1 1.00 1 1 0 0 0 0 0 0 0 0
........TGAACTTTAGCAAGGGCGATCGC........................................................................................................................................ 23 0 1 1.00 1 1 0 0 0 0 0 0 0 0
.........................................................................................................................................TTGGGCTACTTGCACGACATTGAT...... 24 0 1 1.00 1 0 0 0 0 1 0 0 0 0
......CCTGAACTTTAGCAAGGGCGATCGCAT...................................................................................................................................... 27 0 1 1.00 1 0 0 0 0 0 0 1 0 0
.............TTTAGCAAGGGCGATCGCATT..................................................................................................................................... 21 0 1 1.00 1 0 0 0 0 0 0 0 0 1
...........ACTTTAGCAAGGGCGATCGCATTATGTT................................................................................................................................ 28 0 1 1.00 1 0 0 0 1 0 0 0 0 0
..........................................................................................................................................TGGGCTACTTGCACGACATTG........ 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0
...........ACTTTAGCAAGGGCGATCGCATTATGA................................................................................................................................. 27 1 1 1.00 1 0 0 1 0 0 0 0 0 0
............................CGCATTATGTTCTACACCGCCGGCGA................................................................................................................. 26 3 1 1.00 1 0 0 0 0 0 1 0 0 0
..........................................................................................................................................TGGGCTACTTGCACGACATTGA....... 22 0 1 1.00 1 0 1 0 0 0 0 0 0 0
..................................................................................................................................TTCTCTGTTGGGCTACTTGCACGACA........... 26 0 1 1.00 1 0 1 0 0 0 0 0 0 0
...................................................................................................................................TCTCTGTTGGGCTACTTGC................. 19 0 1 1.00 1 0 0 0 1 0 0 0 0 0
..............TTAGCAAGGGCGATCGCATTATA.................................................................................................................................. 23 1 1 1.00 1 0 0 1 0 0 0 0 0 0
.............................................................................................................................AGCGTTTCTCTGTTGGGCTACTT................... 23 0 1 1.00 1 0 0 0 0 1 0 0 0 0
..........................................................................................................................................TGGGCTACTTGCACGACATTGACTCCGA. 28 1 1 1.00 1 0 0 0 1 0 0 0 0 0
.............................................................................................................................AGCGTTTCTCTGTTGGGCTAT..................... 21 1 1 1.00 1 0 0 0 0 0 0 0 1 0
...................................................................................................................................TCTCTGTTGGGCTACTTGCAC............... 21 0 1 1.00 1 0 0 0 1 0 0 0 0 0
...............................................................................................................................................TACTTGCACGACATTGATTCCGAA 24 0 1 1.00 1 0 1 0 0 0 0 0 0 0
GCTCGACCTGAACTTTAGC.................................................................................................................................................... 19 0 1 1.00 1 0 1 0 0 0 0 0 0 0
...................................................................................................................................TCTCTGTTGGGCTACTTGCA................ 20 0 1 1.00 1 0 1 0 0 0 0 0 0 0
.....ACCTGAACTTTAGCAAGGGCGATCGC........................................................................................................................................ 26 0 1 1.00 1 0 0 0 0 1 0 0 0 0
...CGACCTGAACTTTAGCAAGGGCGAT........................................................................................................................................... 25 0 1 1.00 1 0 0 1 0 0 0 0 0 0
..............................................................ATGTCCACTATGTTCGCGCG..................................................................................... 20 0 1 1.00 1 0 1 0 0 0 0 0 0 0
.........GAACTTTAGCAAGGGCGATCGC........................................................................................................................................ 22 0 1 1.00 1 1 0 0 0 0 0 0 0 0
.............................................................................................................................AGCGTTTCTCTGTTGGGCTACTTGCACG.............. 28 0 1 1.00 1 1 0 0 0 0 0 0 0 0
................AGCAAGGGCGATCGCATTATGTTCT.............................................................................................................................. 25 0 1 1.00 1 0 1 0 0 0 0 0 0 0
...........ACTTTAGCAAGGGCGATCG......................................................................................................................................... 19 0 1 1.00 1 0 1 0 0 0 0 0 0 0
..............TTAGCAAGGGCGATCGCATTATGTT................................................................................................................................ 25 0 1 1.00 1 0 0 1 0 0 0 0 0 0
...............TAGCAAGGGCGATCGCATTATGTTC............................................................................................................................... 25 0 1 1.00 1 0 0 1 0 0 0 0 0 0
..............................................................................................................................................CTACTTGCACGACATTGATTCCGAA 25 0 1 1.00 1 0 1 0 0 0 0 0 0 0
.................................................................................................................................................CTTGCACGACATTGATTC.... 18 0 1 1.00 1 0 0 0 0 1 0 0 0 0
.................GCAAGGGCGATCGCATTCTGTTCT.............................................................................................................................. 24 1 1 1.00 1 0 0 0 0 0 0 1 0 0
.....................................................................................................................................TCTGTTGGGCTACTTGCAAAAAA........... 23 3 2 0.50 1 0 0 1 0 0 0 0 0 0
...............................................................................................................TCTCAGGCGACGCCA......................................... 15 1 7 0.29 2 0 0 0 0 0 2 0 0 0
.........................................................................................................TTCGTTTCTCGGCCGACGCCA......................................... 21 3 4 0.25 1 0 0 0 0 0 0 0 1 0
......................................................................................TCCGGTTCTGACGCT.................................................................. 15 1 8 0.13 1 0 0 0 1 0 0 0 0 0
...............................................................................................GTCGCTTTCATTCGT......................................................... 15 1 11 0.09 1 0 0 0 1 0 0 0 0 0
..................................ACGTTCTGCACCGCCGG.................................................................................................................... 17 2 14 0.07 1 0 0 0 1 0 0 0 0 0
...........................................................................................................CATCTCTCAGGCGACGCCA......................................... 19 3 19 0.05 1 0 0 0 1 0 0 0 0 0
........................................................................................................................................................GACATTGATGCCGAA 15 1 20 0.05 1 1 0 0 0 0 0 0 0 0
........................................................................TGTTCGGGCGTTTATA............................................................................... 16 2 20 0.05 1 1 0 0 0 0 0 0 0 0

Anti-sense strand reads

CGAGCTGGACTTGAAATCGTTCCCGCTAGCGTAATACAAGATGTGGCGGCCATACTAAGAAATACAGGTGATACAAGCGCGCAAATAGGCAAAGACTGCGAAAGTAAGCAAAGTGTCCGCTGCGGTCGCAAAGAGACAACCCGATGAACGTGCTGTAACTAAGGCTT
**************************************************.............(((..((.(((.....(((((...........)))))...)))..))...))).************************************************** 		Read size # Mismatch Hit Count Total Norm Total O001
Testis
 SRR553488
RT_0-2 hours eggs
 SRR618934
dsim w501 ovaries
 SRR553487
NRT_0-2 hours eggs
 SRR553486
Makindu_3 day-old ovaries
 M024
male body
.............AAATCGTTCCCGCTAGCGT....................................................................................................................................... 19 0 1 1.00 1 1 0 0 0 0 0
..AGCTGGAGTTGGAACCGTTCC................................................................................................................................................ 21 3 4 0.50 2 0 1 0 0 1 0
..AGCTGGGGTTGGAATCGTTCC................................................................................................................................................ 21 3 2 0.50 1 0 1 0 0 0 0
...............................................................................................CTGCGAAAGTAAGCAGTG...................................................... 18 2 3 0.33 1 0 0 1 0 0 0
.GAGCTGGAGTTGGAACCGTTC................................................................................................................................................. 21 3 6 0.33 2 0 0 1 1 0 0
AGAGCTGGAGTTGGAATCGTT.................................................................................................................................................. 21 3 4 0.25 1 0 0 0 1 0 0
....................................................................................ACAGGCACAGCCTGCGAAA................................................................ 19 3 20 0.05 1 0 0 0 0 0 1

Generated: 04/24/2015 at 10:25 AM