dsi_13307

exon [3l_8516822_8517511_-]; CDS [3l_8516822_8517511_-]; CDS [3l_8516266_8516742_-]; exon [3l_8515488_8516742_-]; intron [3l_8516743_8516821_-]

##################################################-------------------------------------------------------------------------------################################################## GCATCGTTAAGCTGGAGACCATCAAGAAGTCCTTGGAAGTCGAAGTCAAGGTGGGTGTTTGGGTTTTGGGATAAAATTTACTACGTATCTGGTACTATATGAGTCCACGAACTTTGCTATCTCCCCCAGAACTTGTCCATCCGCTTGGAGGAGGTCGAGCTGAACGCCGTCGCCGGCAG ************************************************.((((......(((((((((((...((.((.(((.......))).)).))..)))).))))....)))......)))).************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M025 embryo	M023 head	SRR618934 dsim w501 ovaries	O002 Head	SRR902009 testis	M024 male body	M053 female body	SRR553488 RT_0-2 hours eggs	SRR553486 Makindu_3 day-old ovaries	SRR553485 Chicharo_3 day-old ovaries	GSM343915 embryo	SRR553487 NRT_0-2 hours eggs
...........................................................................................................................................................CGAGCTGAACGCCGTCGCC.....	19	0	2	3.00	6	6	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................ATGAGTCCACGAACTTTGCTATCTCC.......................................................	26	0	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0
.......................AAGAAGTCCTTGGAAGTCGAAG......................................................................................................................................	22	0	2	1.00	2	1	0	0	0	1	0	0	0	0	0	0	0
GCATCGTTAAGCTGGAGACC...............................................................................................................................................................	20	0	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0
..................................................................................ACATATCTGGTACTATATGA.............................................................................	20	1	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0
.............................................................................................................................................................AGCTGAACGCCGTCGCCGGCA.	21	0	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................GGTCGAGCTGAACGCCGTC........	19	0	2	1.00	2	2	0	0	0	0	0	0	0	0	0	0	0
.CATCGTTAAGCTGGAGACC...............................................................................................................................................................	19	0	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................CGAGCTGAACGCCGTCGCCGGCG.	23	1	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................GAGGTCGAGCTGAACGCC...........	18	0	2	1.00	2	2	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................GTCGAGCTGAACGCCGTCGCC.....	21	0	2	0.50	1	1	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................TGTCCATCCGCTTGGAGGAGGTCGAGCT..................	28	0	2	0.50	1	1	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................GCTTGGAGGAGGTCGAGCTGAACGCC...........	26	0	2	0.50	1	0	1	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................CTTGTCCATCCGCTTGGAGGAGGTCGA.....................	27	0	2	0.50	1	0	0	0	0	0	0	1	0	0	0	0	0
.............................................................................................................................CAAGAACTTGTCCATCCGCTTGGAGGAG..........................	28	1	2	0.50	1	1	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................TGGAGGAAGTCGAGCTGAACGCC...........	23	1	2	0.50	1	0	1	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................GGAGGTCGAGCTGAACG.............	17	0	2	0.50	1	0	0	1	0	0	0	0	0	0	0	0	0
................................................................................................................................GAACTTGTCGAGCCGCTT.................................	18	2	2	0.50	1	0	0	1	0	0	0	0	0	0	0	0	0
...................................................................................................................................................GAGGAGGTCGAGCTGAACGCCGTCGCC.....	27	0	2	0.50	1	0	0	0	0	0	1	0	0	0	0	0	0
..............................................CAAGGATGGTGTTTGAGTTTT................................................................................................................	21	3	5	0.20	1	0	0	0	0	0	0	0	0	0	0	1	0
................................................AGGTGGGTTTTCGGGTTTT................................................................................................................	19	2	5	0.20	1	0	0	0	0	1	0	0	0	0	0	0	0
............................GACCATGGAAGTCGAAATC....................................................................................................................................	19	3	20	0.20	4	2	0	0	0	0	1	1	0	0	0	0	0
......................................................GTGTCTGGGTTTTGGGAT...........................................................................................................	18	1	8	0.13	1	0	0	0	0	0	0	0	0	0	1	0	0
.........TGCTGGCGACCATCAAGA........................................................................................................................................................	18	2	10	0.10	1	0	0	0	0	0	0	0	1	0	0	0	0
.....................................................................................................................TATCTCCACCAGAACCTGCC..........................................	20	3	10	0.10	1	0	0	0	0	0	0	0	0	1	0	0	0
..........................................................TTGTGTTGTGGGATAAAA.......................................................................................................	18	2	12	0.08	1	0	0	0	0	0	0	0	0	0	0	0	1
.......................................................TGTTTGGGTTTTGCGA............................................................................................................	16	1	12	0.08	1	0	0	0	0	0	0	0	0	1	0	0	0
.........................................................................................................................................................GTCGAGCCGAACACCGT.........	17	2	18	0.06	1	0	0	0	0	0	0	0	1	0	0	0	0
......................................................GTATTTGGGTTTTGGGAC...........................................................................................................	18	2	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0	0
...................................................................................................................GCTATCTCCCCCAAGA................................................	16	2	20	0.05	1	0	0	0	0	0	0	0	0	0	1	0	0
...........................................................TGGCGTTTGGGATAAA........................................................................................................	16	2	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0
..............................TCTTGGAAGTCGAAATC....................................................................................................................................	17	2	20	0.05	1	0	0	0	0	0	0	0	1	0	0	0	0
.................................TGGAAGTCGAAATCA...................................................................................................................................	15	1	20	0.05	1	0	0	0	0	0	0	0	0	0	1	0	0
...........................................................................................................................................TCCGCTTGGAGAAGG.........................	15	1	20	0.05	1	0	0	0	0	0	0	0	0	1	0	0	0
................................................................................................................................................TTGGTGGAGGTAGAGCT..................	17	2	20	0.05	1	0	0	0	0	0	0	0	1	0	0	0	0

CGTAGCAATTCGACCTCTGGTAGTTCTTCAGGAACCTTCAGCTTCAGTTCCACCCACAAACCCAAAACCCTATTTTAAATGATGCATAGACCATGATATACTCAGGTGCTTGAAACGATAGAGGGGGTCTTGAACAGGTAGGCGAACCTCCTCCAGCTCGACTTGCGGCAGCGGCCGTC ************************************************.((((......(((((((((((...((.((.(((.......))).)).))..)))).))))....)))......)))).************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	SRR553487 NRT_0-2 hours eggs	SRR618934 dsim w501 ovaries	SRR553485 Chicharo_3 day-old ovaries	GSM343915 embryo
....................................................................................................................................................................GCTGCAGCGGCCGTC	15	1	20	0.60	12	9	0	3	0
....................................TTCAGCTTCAGTTCCAC..............................................................................................................................	17	0	3	0.33	1	0	1	0	0
..............................................................................................................................................CGAACCTCCTTCAGCTTG...................	18	2	7	0.14	1	1	0	0	0
..........................................................................................................................GGGGGTCTTGATAGGGTAG......................................	19	3	20	0.05	1	0	0	0	1

Species	Coordinate	ID	Alignment
droSim2	3l:8516693-8516871 -	dsi_13307	GCATCGT-TAAGCTGGAGACCATCAAGAAGTCCTTGGAAGTCGAAGTCAAGGTGGGTGTTTGGG-----TTTTGGGA-T---------------------------------------------------------------------------AA----------AATTTACTACGTATCTGGTACTATATGAGTCCACGAACTTT--------------GCTATCT--C--CCCCAGAACTTGTCCATCCGCTTGGAGGAGGTCGAGCTGAACGCCGTCGCCGGCAG
droSec2	scaffold_0:1004910-1005087 -		GCATCGTTTAAGCTGGAGACCATCAAGAAGTCCTTGGAAGTCGAAGTCAAGGTGCGTGTTTGGG-----TTT-AGGA-T---------------------------------------------------------------------------AA----------AATTTACTACGTATCTGGTACTATATGACTC-ACGAACTTT-G------------GCTATCT--C--CCCCAGAACTTGT-CATCCGCTTGGAGGAGGTCGAGCTGAGCGCGGTCGCAGGCGG
dm3	chr3L:8727181-8727389 -		GCATCGT-TAAGCTGGAGACCATCAAGAAGTCCTTGGAAGTCGAAGTCAAGGTGGGTGTTTGGG-----TTTTGGGA-CATCTA-TCTAACTAA--------------------------------------TATT---TCATAGGG----A-TAA----------AACTTACTACCTATCTGGTACTATATGACTCAACGAACCTT--------------GCAATCTCTC--CCGCAGAACTTGTCCATCCGCTTGGAGGAGGTCGAGCTGAACGCCGTCGCCGGCAG
droEre2	scaffold_4784:5315535-5315729 +	der_730	GCATCGT-TAAGCTGGAGACCATCAAGAAGTCCTTGGAAGTCGAAGTCAAGGTGGGTGCT-----------TTGGGA-TAT-----------------------------------------------AGATTGG----CTTCT--ATATTTGTAT----------ATTTTATTACCTATCTGCTACTATACGACTCTACCAACTTC-T------------GCAATC---C--ACCCAGAACTTGTCCATCCGCTTGGAGGAGGTCGAGCTGAACGCCGTCGCCGGCAG
droYak3	3L:3183095-3183304 +		GCATCGT-GAAGCTGGAGACCATCAAGAAGTCCTTGGAAGTCGAAGTCAAGGTGCGTATCTGGG-----TTTTTGGC-TATC-------ACTAA--------------------------------------CTT----TCACTGGG----T-TACATTTGCTTCTATTCTACTACCTATCTGGTGCTATATGACTCTACCCATTTT--------------GTAATCC--G--CTCCAGAACTTGTCCATCCGCTTGGAGGAGGTCGAGCTGAACGCCGTCGCCGGCAG
droEug1	scf7180000408961:359232-359331 +		ATGCCCA-GACCCAGGAGAAATTGAGGAAGGCCCTCGAGCAGCAGATCAAGG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGCTGCAGGTCCGTCTTGACGAGGCCGAGGCCAACGCCCTCAAGGGAGG
droBia1	scf7180000301468:954202-954301 +		ATGCCCA-GACCCAGGAGAAATTGAGGAAGGCCCTCGAGCAGCAGATCAAGG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AACTGCAGGTCCGTTTGGACGAGGCCGAGGCCAACGCCCTCAAGGGAGG
droTak1	scf7180000415914:532873-532972 +		ATGCCCA-GACCCAGGAGAAATTGAGGAAGGCCCTCGAGCAGCAGATCAAGG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGCTGCAGGTCCGTCTCGACGAGGCCGAGGCCAATGCCCTCAAGGGTGG
droEle1	scf7180000490579:556560-556659 -		ATGCCCA-GACCCAGGAGAAGCTGAGGAAGGCCCTCGAGCAGCAGATCAAGG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGCTGCAGGTCCGTTTGGACGAGGCCGAGGCCAACGCCCTTAAGGGAGG
droRho1	scf7180000757780:3809-3878 +		GCATCGT-TAAGCTGGAGACCATCAAGAAGTCCTTGGAAGTCGAAGTCAAGGTGGGTGATTACT-----TTT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CA----AG
droFic1	scf7180000454078:713310-713409 +		ATGCCCA-GACCCAGGAGAAGTTGAGGAAGGCCCTCGAGCAGCAGATCAAGG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGCTGCAGGTCCGTCTGGACGAGGCCGAGGCCAACGCCCTCAAGGGTGG
droKik1	scf7180000302474:239666-239865 +		GCATCGT-GAAGCTGGAGACCATCAAGAAGTCCTTGGAAGTCGAAGTCAAGGTACCAA----GT------------C-AAACAATTCT----AAA-----------------------------TTATACATTACAACA---------------------CTTTCCCATTTCTTATCCATTTAATATCA-------------TTTATTCTCCGTTTAATCCCAAATCC--C--CTGTAGAACTTGTCCATCCGCTTGGAGGAGGTCGAGCTGAACGCCGTCGCCGGCAG
droAna3	scaffold_13337:7913296-7913450 +		GCATTGT-CAAGCTGGAGACCATCAAGAAGTCTTTGGAAGTCGAAGTCAAGGTGAGAT--AAT----------CAGA-AAAATA--------------TGTAGTATTTCACAGCTAATCC-----------------------------------------------------------------------------------------------------TTTGTC---C--GTCCAGAACTTGTCCATCCGCTTGGAGGAGGTCGAGCTGAACGCCGTTGCCGGCAG
droBip1	scf7180000396541:69603-69757 +		GCATTGT-CAAGCTGGAGACCATCAAGAAGTCTTTGGAAGTCGAAGTCAAGGTAAGCT--TA----------TGAGA-AATCTA--------------TGTAGAGTTACCCACTTAATCC-----------------------------------------------------------------------------------------------------GTTGTC---C--GTCTAGAACTTGTCCATCCGCTTGGAGGAGGTCGAGCTGAACGCCGTTGCCGGCAG
dp5	XR_group8:8863429-8863601 +		GCATTGT-CAAGCTCGAGACCATCAAGAAGTCGTTGGAAGTCGAAGTCAAGGTAAGCGTGTACT-------TTGGGA-C-----------------------------------------TATCTTGGACATTCCAACATTACT----------------------------------------AA------------TCG-TTTAT-GTGTGTTTAAT-------T---C--GATTAGAACTTGTCCATTCGTCTGGAAGAGGTTGAGCTGAATGCCGTTGCCGGCAG
droPer2	scaffold_50:342698-342870 -		GCATTGT-CAAGCTCGAGACCATCAAGAAGTCTTTGGAAGTCGAAGTCAAGGTAAGCGTGTACT-------TTGGGA-C-----------------------------------------TATCTTGGACATTCCAACATTACT----------------------------------------TA------------TCG-TTTAT-GTGTGTTTGAT-------T---C--GATTAGAACTTGTCCATTCGTCTGGAAGAGGTTGAGCTGAATGCCGTTGCCGGCAG
droWil2	scf2_1100000004511:8131054-8131226 +		GCATTGT-TAAGCTGGAAACCATCAAGAAGTCTTTGGAAGTCGAAGTCAAGGTAAGTT--TACC-----TTA-CACACAACATT--------------CACTGTA--------------------------TCTCAATC----------------------------------------------------TCATTC-TCC-TTTTT-CTCTTTCTCGC-------C---C--TGTTAGAACTTGTCCATTCGCCTGGAGGAGGTTGAGCTGAATGCCGTTGCTGGTAG
droVir3	scaffold_13049:6388714-6388887 -	dvi_18646	GCAGCAT-CAAGCTGGAGACCATCAAGAAGTCTTTGGAAGTCGAAGTCAAGGTAAGCGACAACT-----CACTGCGA-GATCAATGCA----AAAGTAGATAATA--------------T------------GT---------------------------------------------------------TGATACCATGCACATT------------------TC---CATGCACAGAACTTGTCCATTCGCCTGGAGGAAGTGGAGTTGAACGCCGTTGCCGGTAG
droMoj3	scaffold_6680:4709353-4709519 -		GCTGCGT-CAAGCTGGAGACCATCAAGAAGTCTTTGGAAGTCGAAGTCAAGGTAGGCGCCA-GACGAAAAC---------------------------------------------------TCTTAAATATTCTC---TTAC--------------------------------------------TATAT------ATGTATATC--------------GTTATCTTCC--GCACAGAACTTGTCCATTCGCCTGGAGGAAGTTGAGCTGAACGCCGTTGCCGGTAG
droGri2	scaffold_15110:6353759-6353923 +		GCATTGT-CAAGCTGGAGACCATCAAGAAGTCATTGGAAGTCGAAGTCAAGGTATGT--CCAGA-----TCTCTGAT-C---------AATTAA--------------------------------------TCTC---TTAT-AGA----T-TAA-------------------------------------ACTACACCC-------------------ATTATC---CATCCATAGAACTTGTCCATTCGCTTGGAGGAAGTGGAGCTGAACGCTGTTGCCGGTAG

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droSim2

GCATCGT-TAAGCTGGAGACCATCAAGAAGTCCTTGGAAGTCGAAGTCAAGGTGGGTGTTTGGG-----TTTTGGGA-T---------------------------------------------------------------------------AA----------AATTTACTACGTATCTGGTACTATATGAGTCCACGAACTTT--------------GCTATCT--C--CCCCAGAACTTGTCCATCCGCTTGGAGGAGGTCGAGCTGAACGCCGTCGCCGGCAG	Size	Hit Count	Total Norm	Total	M023 Head	M024 Male-body	M025 Embryo	M053 Female-body	O001 Testis	O002 Head	SRR553485 Ovary	SRR553486 Ovary	SRR553487 Ovary	SRR553488 Ovary	SRR618934 Ovary	V044 Embryo	SRR902008 Ovary	SRR902009 Testis	SRR1275487 Male larvae	SRR1275485 Male prepupae	SRR1275483 Male prepupae
.........................................................................................................................................................................................................................................................................CGAGCTGAACGCCGTCGCC.....	19	2	3.00	6	0	0	6	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................ATGAGTCCACGAACTTT--------------GCTATCT--C--C.......................................................	26	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................AAGAAGTCCTTGGAAGTCGAAG...................................................................................................................................................................................................................................................	22	2	1.00	2	0	0	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0
GCATCGT-TAAGCTGGAGACC............................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................AGCTGAACGCCGTCGCCGGCA.	21	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................GGTCGAGCTGAACGCCGTC........	19	2	1.00	2	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.CATCGT-TAAGCTGGAGACC............................................................................................................................................................................................................................................................................	19	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................CGAGCTGAACGCCGTCGCCGGCG.	23	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................GAGGTCGAGCTGAACGCC...........	18	2	1.00	2	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................GTCGAGCTGAACGCCGTCGCC.....	21	2	0.50	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................TGTCCATCCGCTTGGAGGAGGTCGAGCT..................	28	2	0.50	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................GCTTGGAGGAGGTCGAGCTGAACGCC...........	26	2	0.50	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................CTTGTCCATCCGCTTGGAGGAGGTCGA.....................	27	2	0.50	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................GGAGGTCGAGCTGAACG.............	17	2	0.50	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................GAGGAGGTCGAGCTGAACGCCGTCGCC.....	27	2	0.50	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droSec2

GCATCGTTTAAGCTGGAGACCATCAAGAAGTCCTTGGAAGTCGAAGTCAAGGTGCGTGTTTGGG-----TTT-AGGA-T---------------------------------------------------------------------------AA----------AATTTACTACGTATCTGGTACTATATGACTC-ACGAACTTT-G------------GCTATCT--C--CCCCAGAACTTGT-CATCCGCTTGGAGGAGGTCGAGCTGAGCGCGGTCGCAGGCGG	Size	Hit Count	Total Norm	Total	M054 Female-body	V113 Male-body	V114 Embryo	V115 Head
............................AGTCCTTGGAAGTCGAAGTCA................................................................................................................................................................................................................................................	21	1	1.00	1	1	0	0	0
.............................GTCCTTGGAAGTCGAAGTCAAGA.............................................................................................................................................................................................................................................	23	1	1.00	1	0	0	1	0
........................AAGAAGTCCTTGGAAGTCGAAGT..................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	1	0
...............GAGACCATCAAGAAGTCCTTGGAAGT........................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	1
...........................AAGTCCTTGGAAGTCGAAGTCAAGAA............................................................................................................................................................................................................................................	26	1	1.00	1	0	1	0	0
.....................ATCAAGAAGTCCTTGGAAGTCGAAGTC.................................................................................................................................................................................................................................................	27	1	1.00	1	0	1	0	0
............................AGTCCTTGGAAGTCGAAGTCAAGA.............................................................................................................................................................................................................................................	24	1	1.00	1	0	0	1	0
.......TTAAGCTGGAGACCATCAAGA.....................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	1	0
.....................ATCAAGAAGTCCTTGGAAGTCG......................................................................................................................................................................................................................................................	22	1	1.00	1	1	0	0	0

dm3

GCATCGT-TAAGCTGGAGACCATCAAGAAGTCCTTGGAAGTCGAAGTCAAGGTGGGTGTTTGGG-----TTTTGGGA-CATCTA-TCTAACTAA--------------------------------------TATT---TCATAGGG----A-TAA----------AACTTACTACCTATCTGGTACTATATGACTCAACGAACCTT--------------GCAATCTCTC--CCGCAGAACTTGTCCATCCGCTTGGAGGAGGTCGAGCTGAACGCCGTCGCCGGCAG	Size	Hit Count	Total Norm	Total	GSM154618 Ovary	GSM154620 Ovary	GSM154621 Ovary	GSM154622 Ovary	GSM180328 Head	GSM180329 Mixed-body	GSM180330 Embryo	GSM180331 Embryo	GSM180332 Embryo	GSM180333 Embryo	GSM180334 Larvae	GSM180335 Disc	GSM180336 Pupae	GSM180337 S2	GSM231091 Ovary	GSM239041 Head	GSM239050 Head	GSM239051 S2	GSM239052 S2	GSM246084 Head	GSM266765 S2	GSM280082 Ovary	GSM280083 Ovary	GSM280084 Ovary	GSM280085 Testis	GSM280086 Ovary	GSM280087 S2-NP	GSM280088 S2-NP	GSM312995 Head	GSM313160 Head	GSM313161 Head	GSM313162 Head	GSM313163 Head	GSM313164 Head	GSM313165 Head	GSM343287 Embryo	GSM379050 Ovary	GSM379051 Ovary	GSM379052 Ovary	GSM379053 Ovary	GSM379054 Ovary	GSM379055 Ovary	GSM379056 Ovary	GSM379057 Ovary	GSM379058 Ovary	GSM379059 Ovary	GSM379060 Ovary	GSM379061 Ovary	GSM379062 Ovary	GSM379063 Ovary	GSM379064 Ovary	GSM379065 Ovary	GSM379066 Ovary	GSM379067 Ovary	GSM424739 S2	GSM424740 S2	GSM424741 S2	GSM467729 Female-body	GSM467730 Female-body	GSM467731 Female-body	M002 CS	M003 Male-body	M004 Male-body	M005 ML-DmD32	M006 ML-DmD32	M029 OSC	M030 OSC	M031 OSC	M032 S2-R+	M033 S2-R+	M034 S2-R+	M035 S2-R+	M036 S2-R+	M037 S2-R+	M038 S2-R+	M039 S2-R+	M048 S2-R+	OSS2 OSS	OSS6 OSS	OSS7 OSS	OSS8 OSS	S1 Head	S10 Embryo	S11 Embryo	S12 Embryo	S13 Embryo	S14 Embryo	S15 S2-GMR	S16 Kc	S17 Larvae	S18 Larvae	S19 Pupae	S2 Head	S20 Pupae	S21 Disc	S22 Head	S23 Female-body	S24 Male-body	S25 Larvae	S26 Larvae	S27 Pupae	S28 Pupae	S29 Head	S3 Male-body	S30 S2-GMR	S31 S2	S32 S2	S33 Kc	S34 Kc	S35 Kc	S4 Female-body	S5 Disc	S6 Embryo	S7 Embryo	S8 S2	S9 Embryo	SRR001337 Head	SRR001338 Head	SRR001339 Head	SRR001340 Head	SRR001341 Head	SRR001342 Head	SRR001343 Head	SRR001344 Head	SRR001345 Head	SRR001346 Head	SRR001347 Head	SRR001348 Head	SRR001349 Head	SRR001664 Head	SRR010951 Ovary	SRR010952 Ovary	SRR010953 Ovary	SRR010954 Ovary	SRR010955 Ovary	SRR010956 Ovary	SRR010957 Ovary	SRR010958 Ovary	SRR010959 Ovary	SRR010960 Ovary	SRR014268 Embryo	SRR014269 Embryo	SRR014270 Embryo	SRR014271 Embryo	SRR014272 Embryo	SRR014273 Ovary	SRR014274 Ovary	SRR014275 Ovary	SRR014276 Ovary	SRR014277 Ovary	SRR014278 Ovary	SRR014279 Ovary	SRR014280 Ovary	SRR014281 Ovary	SRR014282 Ovary	SRR023197 S2	SRR023399 S2	SRR023400 S2	SRR023402 S2	SRR023407 S2	SRR029028 S2	SRR029029 S2	SRR029030 S2	SRR029031 S2	SRR029032 S2	SRR029033 S2	SRR029608 Head	SRR029633 Head	SRR030145 gb3	SRR031692 Head	SRR031693 Head	SRR031694 Head	SRR031696 Head	SRR031697 Head	SRR031698 Head	SRR031699 Head	SRR031700 Head	SRR031701 Head	SRR031702 Head	SRR031703 Head	SRR031704 Head	SRR032092 S2	SRR032093 S2	SRR032094 S2	SRR032095 S2-NP	SRR032096 S2-NP	SRR032152 Head	SRR060643 Testis	SRR060644 Ovary	SRR060645 Testis	SRR060646 Ovary	SRR060647 Ovary	SRR060648 Ovary	SRR060649 Ovary	SRR060650 Testis	SRR060651 Ovary	SRR060652 Testis	SRR060653 Ovary	SRR065151 Ovary	SRR065152 Ovary	SRR065153 Ovary	SRR065154 Ovary	SRR065155 Ovary	SRR065800 Ovary	SRR065801 Ovary	SRR065802 Ovary	SRR065803 Ovary	SRR065804 Ovary	SRR065805 Ovary	SRR065806 Ovary	SRR065807 Ovary	SRR097865 S2-NP	SRR097866 S2-NP	SRR097867 S2-NP	SRR298536 Ovary	SRR298537 Ovary	SRR298711 Ovary	SRR298712 Ovary	SRR317110 Ovary	SRR317111 Ovary	SRR317112 Ovary	SRR317113 Ovary	SRR317114 Ovary	SRR317115 Ovary	SRR317116 Ovary	SRR317117 Ovary	SRR341115 S2	SRR341116 S2	SRR341117 S2	SRR341118 S2	SRR351332 Mixed-body	SRR351333 Mixed-body	T004 OSC	T005 CME-L1	V001 Embryo	V002 Embryo	V003 S2	V006 Female-body	V007 Head	V008 S2	V009 CME-L1	V010 ML-DmD20-C5	V011 Sg4	V012 Male-body	V013 Head	V014 DTT	V015 DreRFHV	V018 Kc167	V019 GM2	V020 S2-R+	V021 ML-DmD21	V022 ML-DmD32	V023 Head	V024 Kc167	V025 S2-R+	V026 1182-2H	V027 ML-DmD21	V028 CME-W1-Cl.8+	V029 ML-DmD9	V030 ML-DmD8	V031 GM2	V032 S1	V033 CME-W1-Cl.8+	V034 ML-DmD16-C3	V035 ML-DmD32	V036 ML-DmD20-C5	V037 S2	V038 S2	V063 Ovary	V0632 Ovary	V064 Ovary	V0642 Ovary	V065 Ovary	V0652 Ovary	V066 Ovary	V0662 Ovary	V067 S2-NP	V073 mbn2	V074 S3	V075 ML-DmBG1-C1	V076 ML-DmBG3-C2	V077 Head	V078 Head	V079 Head	V080 Head	V081 Embryo	V082 Embryo	V083 Male-body	V084 Female-body	V085 CME-W2	V086 Female-body	V088 Ovary	V0882 Ovary	V089 Ovary	V0892 Ovary	V090 Male-body	V091 fGS/OSS	V092 Male-body	V093 Male-body	V094 S2-R+	V095 S2-R+	V096 Ovary	V097 Ovary	V098 Ovary	V125 ML-DmD9	V126 CME-L1	V127 G2	V128 S3	V129 ML-DmBG1-C1	V130 ML-DmBG3-C2	V131 ML-DmD16-C3	V132 ML-DmD32	V133 Sg4	V134 ML-DmD8	V135 CME-W2	V136 Male-body	V137 Head	V138 Male-body	V139 Female-body	V140 Female-body	V141 Female-body	V142 Female-body	V144 OSC	V145 S2	V146 S1	V147 1182-2H	V148 mbn2	GSM1528798 follicle cells
.....GT-TAAGCTGGAGACCATCAAG......................................................................................................................................................................................................................................................................	21	1	3.00	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................AAGTCCTTGGAAGTCGAA....................................................................................................................................................................................................................................................	18	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................ATCCGCTTGGAGGAGGTCGAGCT..................	23	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................GCTTGGAGGAGGTCGAGC...................	18	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0
.........................AGAAGTCCTTGGAAGTCG......................................................................................................................................................................................................................................................	18	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................GTCCTTGGAAGTCGAAGTCAAGAA............................................................................................................................................................................................................................................	24	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
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.........AAGCTGGAGACCATCAAGAAGTCCT...............................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...TCGT-TAAGCTGGAGACCATC.........................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................GGTCGAGCTGAACGCCGTCGCC.....	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................AAGAAGTCCTTGGAAGTCGAAGTCAAGA.............................................................................................................................................................................................................................................	28	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................TGGAGGAGGTCGAGCTGAACGATC..........	24	2	0.50	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................CATAGGG----A-TAA----------AACTTAGA...................................................................................................................	19	3	0.33	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................TGGAAGTCGAAGTCAAGAA............................................................................................................................................................................................................................................	19	3	0.33	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................CATAGGG----A-TAA----------AACTTATA...................................................................................................................	19	5	0.20	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droEre2

GCATCGT-TAAGCTGGAGACCATCAAGAAGTCCTTGGAAGTCGAAGTCAAGGTGGGTGCT-----------TTGGGA-TAT-----------------------------------------------AGATTGG----CTTCT--ATATTTGTAT----------ATTTTATTACCTATCTGCTACTATACGACTCTACCAACTTC-T------------GCAATC---C--ACCCAGAACTTGTCCATCCGCTTGGAGGAGGTCGAGCTGAACGCCGTCGCCGGCAG	Size	Hit Count	Total Norm	Total	M055 Female-body	M057 Embryo	V060 Head	V040 Embryo	V107 Male-body	V108 Head	GSM1528801 follicle cells
.........................................................................................................................................................................................................AACTTC-T------------GCAATC---C--ACCCAGTT................................................	22	1	12.00	12	9	0	0	1	1	1	0
.........................................................................................................................................................................................................AACTTC-T------------GCAATC---C--ACCCAGT.................................................	21	1	2.00	2	1	0	0	0	0	1	0
.........................................................................................................................................................................................................AACTTC-T------------GCAATC---C--ACCCAG..................................................	20	1	2.00	2	2	0	0	0	0	0	0
................................................................................................................................................................................................................................................ACTTGTCCATCCGCTTGGAGGAGGT........................	25	1	1.00	1	0	0	0	0	1	0	0
.....................................................................................................................................................................................................TACCAACTTC-T------------GCAATC---C--ACC.....................................................	21	1	1.00	1	1	0	0	0	0	0	0
.................................TTGGAAGTCGAAGTCAAGA.............................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	1	0	0
...................................................................................................................................................................................................................................................TGTCCATCCGCTTGGAGGAGGTCGAGCT..................	28	1	1.00	1	0	0	0	0	1	0	0
................................................................................................................................................................................................................................................ACTTGTCCATCCGCTTGGAGGAGGG........................	25	1	1.00	1	0	0	0	0	1	0	0
.........................................................................................................................................................................................................................................................................CGAGCTGAACGCCGTCGCCGGCA.	23	1	1.00	1	1	0	0	0	0	0	0
........................................................................................................................................................................................................CAACTTC-T------------GCAATC---C--ACCCAGT.................................................	22	1	1.00	1	0	1	0	0	0	0	0
..........................GAAGTCCTTGGAAGTCGAAG...................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	1	0	0
.........................................................................................................................................................................................................AACTTC-T------------GCAATC---C--ACCCAGA.................................................	21	1	1.00	1	1	0	0	0	0	0	0
GCATCGT-TAAGCTGGAGA..............................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	1	0	0	0
...........................AAGTCCTTGGAAGTCGAAGTCAAGA.............................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	1	0	0
............................................................................................................................................................................................................................................................GCTTGGAGGAGGTCGAGCTGAACGCC...........	26	1	1.00	1	0	0	0	0	1	0	0
.....GT-TAAGCTGGAGACCATCAAGAAGTCCT...............................................................................................................................................................................................................................................................	28	1	1.00	1	0	1	0	0	0	0	0
.....................................................................................................................................................................................................TACCAACTTC-T------------GCAATC---C--ACCT....................................................	22	1	1.00	1	1	0	0	0	0	0	0
.............TGGAGACCATCAAGAAGTC.................................................................................................................................................................................................................................................................	19	1	1.00	1	0	1	0	0	0	0	0
..........AGCTGGAGACCATCAAGAAGTCCT...............................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	1	0	0
..ATCGT-TAAGCTGGAGACCA...........................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	1	0	0
...................................................GTGGGTGCT-----------TTGGGA-TAT-----------------------------------------------AGATTGG----......................................................................................................................................................	25	1	1.00	1	0	0	0	0	1	0	0
..........................................................................................................................................................................................................................................................CCGCTTGGAGGAGGTCGAGCC..................	21	1	1.00	1	0	1	0	0	0	0	0
...................................................GTGGGTGCT-----------TTGGGA-TAT-----------------------------------------------AG...............................................................................................................................................................	20	1	1.00	1	0	0	0	0	1	0	0
..........................................................................................................................................................................................................ACTTC-T------------GCAATC---C--ACCCAGAA................................................	21	1	1.00	1	1	0	0	0	0	0	0
............CTGGAGACCATCAAGAAGT..................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	1	0	0	0
...................................................GTGGGTGCT-----------TTGGGA-TAT-----------------------------------------------AGA..............................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	1	0
...........................................................................................................................................................................................................CTTC-T------------GCAATC---C--ACCCAGTT................................................	20	2	0.50	1	1	0	0	0	0	0	0

droYak3

GCATCGT-GAAGCTGGAGACCATCAAGAAGTCCTTGGAAGTCGAAGTCAAGGTGCGTATCTGGG-----TTTTTGGC-TATC-------ACTAA--------------------------------------CTT----TCACTGGG----T-TACATTTGCTTCTATTCTACTACCTATCTGGTGCTATATGACTCTACCCATTTT--------------GTAATCC--G--CTCCAGAACTTGTCCATCCGCTTGGAGGAGGTCGAGCTGAACGCCGTCGCCGGCAG	Size	Hit Count	Total Norm	Total	M026 Head	M043 Female-body	M056 Embryo	V046 Embryo	V052 Head	V058 Head	V120 Male-body	SRR1275488 Male larvae	SRR1275486 Male prepupae	SRR1275484 Male prepupae	GSM1528802 follicle cells
.................GACCATCAAGAAGTCCTTGGAAGT........................................................................................................................................................................................................................................................	24	1	15.00	15	0	0	0	0	0	0	0	0	0	0	15
................................................................................................................................................................................................................................................ACTTGTCCATCCGCTTGGAGGAGGTCGAGCT..................	31	1	10.00	10	0	0	0	0	0	0	0	0	0	0	10
...................................................................................................................................................................................................................................................TGTCCATCCGCTTGGAGGAGGTCG......................	24	1	9.00	9	0	0	0	0	0	0	0	0	0	0	9
.............................GTCCTTGGAAGTCGAAGTCAAGA.............................................................................................................................................................................................................................................	23	1	2.00	2	0	2	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................GTCCATCCGCTTGGAGGAGGTCGAGCT..................	27	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................TGGAGGAGGTCGAGCTGAACGCCGTCGCC.....	29	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0
.....GT-GAAGCTGGAGACCATCAAG......................................................................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................CCGCTTGGAGGAGGTCGAGCT..................	21	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
....................................................................................................................................................................................................................................................GTCCATCCGCTTGGAGGAGG.........................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................GGAGGTCGAGCTGAACGCCGTCGCC.....	25	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
.....GT-GAAGCTGGAGACCATCA........................................................................................................................................................................................................................................................................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................CTTGGAGGAGGTCGAGCTGAACGCC...........	25	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................ATCCGCTTGGAGGAGGTCG......................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................GCTTGGAGGAGGTCGAGCTG.................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
........GAAGCTGGAGACCATCAAGAA....................................................................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
...TCGT-GAAGCTGGAGACCATCAAG......................................................................................................................................................................................................................................................................	23	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................TCCGCTTGGAGGAGGTCGAGC...................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................CCATCCGCTTGGAGGAGGTCGAGC...................	24	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................TGTCCATCCGCTTGGAGGAGGT........................	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
.........................AGAAGTCCTTGGAAGTCGAAGTCAAGA.............................................................................................................................................................................................................................................	27	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................GTCGAGCTGAACGCCGTCGCCGGCA.	25	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
...............................CCTTGGAAGTCGAAGTCAAG..............................................................................................................................................................................................................................................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................GTCGAGCTGAACGCCGTCGCC.....	21	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0

droEug1

ATGCCCA-GACCCAGGAGAAATTGAGGAAGGCCCTCGAGCAGCAGATCAAGG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGCTGCAGGTCCGTCTTGACGAGGCCGAGGCCAACGCCCTCAAGGGAGG	Size	Hit Count	Total Norm	Total
No Reads

droBia1

ATGCCCA-GACCCAGGAGAAATTGAGGAAGGCCCTCGAGCAGCAGATCAAGG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AACTGCAGGTCCGTTTGGACGAGGCCGAGGCCAACGCCCTCAAGGGAGG	Size	Hit Count	Total Norm	Total
No Reads

droTak1

ATGCCCA-GACCCAGGAGAAATTGAGGAAGGCCCTCGAGCAGCAGATCAAGG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGCTGCAGGTCCGTCTCGACGAGGCCGAGGCCAATGCCCTCAAGGGTGG	Size	Hit Count	Total Norm	Total
No Reads

droEle1

ATGCCCA-GACCCAGGAGAAGCTGAGGAAGGCCCTCGAGCAGCAGATCAAGG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGCTGCAGGTCCGTTTGGACGAGGCCGAGGCCAACGCCCTTAAGGGAGG	Size	Hit Count	Total Norm	Total
No Reads

droRho1

GCATCGT-TAAGCTGGAGACCATCAAGAAGTCCTTGGAAGTCGAAGTCAAGGTGGGTGATTACT-----TTT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CA----AG	Size	Hit Count	Total Norm	Total
No Reads

droFic1

ATGCCCA-GACCCAGGAGAAGTTGAGGAAGGCCCTCGAGCAGCAGATCAAGG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGCTGCAGGTCCGTCTGGACGAGGCCGAGGCCAACGCCCTCAAGGGTGG	Size	Hit Count	Total Norm	Total
No Reads

droKik1

GCATCGT-GAAGCTGGAGACCATCAAGAAGTCCTTGGAAGTCGAAGTCAAGGTACCAA----GT------------C-AAACAATTCT----AAA-----------------------------TTATACATTACAACA---------------------CTTTCCCATTTCTTATCCATTTAATATCA-------------TTTATTCTCCGTTTAATCCCAAATCC--C--CTGTAGAACTTGTCCATCCGCTTGGAGGAGGTCGAGCTGAACGCCGTCGCCGGCAG	Size	Hit Count	Total Norm	Total
No Reads

droAna3

GCATTGT-CAAGCTGGAGACCATCAAGAAGTCTTTGGAAGTCGAAGTCAAGGTGAGAT--AAT----------CAGA-AAAATA--------------TGTAGTATTTCACAGCTAATCC-----------------------------------------------------------------------------------------------------TTTGTC---C--GTCCAGAACTTGTCCATCCGCTTGGAGGAGGTCGAGCTGAACGCCGTTGCCGGCAG	Size	Hit Count	Total Norm	Total	M044 Female-body	M058 Embryo	V039 Embryo	V055 Head	V105 Male-body	V106 Head
...TTGT-CAAGCTGGAGACCATCAAG......................................................................................................................................................................................................................................................................	23	1	2.00	2	0	0	0	0	0	2
................................TTTGGAAGTCGAAGTCAAGA.............................................................................................................................................................................................................................................	20	1	2.00	2	0	0	0	0	0	2
..........................................................................................................................................................................................................................................................CCGCTTGGAGGAGGTCGAGCT..................	21	1	1.00	1	1	0	0	0	0	0
...............................................................................................................................................................................................................................................................TGGAGGAGGTCGAGCTGAACG.............	21	1	1.00	1	1	0	0	0	0	0
..........................................................................................................................................................................................................................................................................GAGCTGAACGCCGTTGCCGGCA.	22	1	1.00	1	0	0	1	0	0	0
....................................................................................................................................................................................................................................................................GAGGTCGAGCTGAACGCCGTTGCC.....	24	1	1.00	1	1	0	0	0	0	0
...................................................................................................................................................................................................................................................TGTCCATCCGCTTGGAGGAGGTCGAGCT..................	28	1	1.00	1	1	0	0	0	0	0
..............................................................................................................................................................................................................................................................TTGGAGGAGGTCGAGCTGAA...............	20	1	1.00	1	1	0	0	0	0	0
.......................................................................................................................................................................................................................................................CATCCGCTTGGAGGAGGTCGAGCTG.................	25	1	1.00	1	0	1	0	0	0	0
......................................................................................................................................................................................................................................................................GGTCGAGCTGAACGCCGTTGCCGGC..	25	1	1.00	1	1	0	0	0	0	0
.....GT-CAAGCTGGAGACCATCAA.......................................................................................................................................................................................................................................................................	20	1	1.00	1	1	0	0	0	0	0
...................CCATCAAGAAGTCTTTGGAAG.........................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	1	0	0	0
GCATTGT-CAAGCTGGAGACCATCAAGA.....................................................................................................................................................................................................................................................................	27	1	1.00	1	0	1	0	0	0	0
.....................................................................................................................................................................................................................................................................AGGTCGAGCTGAACGCCGTTGCC.....	23	1	1.00	1	1	0	0	0	0	0
..ATTGT-CAAGCTGGAGACCATC.........................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	1	0	0	0
........................AAGAAGTCTTTGGAAGTC.......................................................................................................................................................................................................................................................	18	1	1.00	1	0	1	0	0	0	0
.........................AGAAGTCTTTGGAAGTCGAAGT..................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	1
......................................................................................................................................................................................................................................................................GGTCGAGCTGAACGCCGTTGCCGGCA.	26	1	1.00	1	0	1	0	0	0	0
.................................................................................................................................................................................................................................................................GAGGAGGTCGAGCTGAACGC............	20	1	1.00	1	0	0	0	1	0	0
.........................................................................................................................................................................................................................................................................CGAGCTGAACGCCGTTGCCGGC..	22	1	1.00	1	0	1	0	0	0	0
....TGT-CAAGCTGGAGACCATCAA.......................................................................................................................................................................................................................................................................	21	1	1.00	1	1	0	0	0	0	0
.................GACCATCAAGAAGTCTTTGGAAGTCG......................................................................................................................................................................................................................................................	26	1	1.00	1	0	1	0	0	0	0
.............................................................................................................................................................................................................................................AGAACTTGTCCATCCGCTT.................................	19	1	1.00	1	0	0	1	0	0	0
GCATTGT-CAAGCTGGAGACCATC.........................................................................................................................................................................................................................................................................	23	1	1.00	1	1	0	0	0	0	0
.........................................................................................................................................................................................................................................................TCCGCTTGGAGGAGGTCG......................	18	1	1.00	1	1	0	0	0	0	0
....................CATCAAGAAGTCTTTGGAAGT........................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	1	0	0	0
...................................................................................................................................................................................................................................................TGTCCATCCGCTTGGAGGAGGTCGAGC...................	27	1	1.00	1	0	0	0	0	0	1
..................................................................................................................................................................................................................................................TTGTCCATCCGCTTGGAGGAGGTCGA.....................	26	1	1.00	1	0	1	0	0	0	0
.........................................................................................................................................................................................................................................................TCCGCTTGGAGGAGGTCGAGC...................	21	1	1.00	1	0	0	0	0	1	0

droBip1

GCATTGT-CAAGCTGGAGACCATCAAGAAGTCTTTGGAAGTCGAAGTCAAGGTAAGCT--TA----------TGAGA-AATCTA--------------TGTAGAGTTACCCACTTAATCC-----------------------------------------------------------------------------------------------------GTTGTC---C--GTCTAGAACTTGTCCATCCGCTTGGAGGAGGTCGAGCTGAACGCCGTTGCCGGCAG	Size	Hit Count	Total Norm	Total
No Reads

dp5

GCATTGT-CAAGCTCGAGACCATCAAGAAGTCGTTGGAAGTCGAAGTCAAGGTAAGCGTGTACT-------TTGGGA-C-----------------------------------------TATCTTGGACATTCCAACATTACT----------------------------------------AA------------TCG-TTTAT-GTGTGTTTAAT-------T---C--GATTAGAACTTGTCCATTCGTCTGGAAGAGGTTGAGCTGAATGCCGTTGCCGGCAG	Size	Hit Count	Total Norm	Total	M022 Male-body	M040 Female-body	M059 Embryo	M062 Head	V043 Embryo	V051 Head	V112 Male-body	SRR902010 Ovary	SRR902011 Testis	SRR902012 CNS imaginal disc
................................................................................................................................................................................................................................................................GGAAGAGGTTGAGCTGAAT..............	19	1	2.00	2	0	2	0	0	0	0	0	0	0	0
..ATTGT-CAAGCTCGAGACCAT..........................................................................................................................................................................................................................................................................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................GGAAGAGGTTGAGCTGAATGCCGTTGCC.....	28	1	1.00	1	0	0	1	0	0	0	0	0	0	0
.............TCGAGACCATCAAGAAGTC.................................................................................................................................................................................................................................................................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.........................AGAAGTCGTTGGAAGTCGA.....................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	1
........................................................................................................................................................................................................................................................ATTCGTCTGGAAGAGGTTGAGCTGA................	25	1	1.00	1	0	0	0	0	0	0	0	0	0	1
.......................................................................................................................................................................................................................................................................GTTGAGCTGAATGCCGTTG.......	19	1	1.00	1	0	0	0	0	0	1	0	0	0	0
..............CGAGACCATCAAGAAGTCGTT..............................................................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................GTCTGGAAGAGGTTGAGCTGAAT..............	23	1	1.00	1	0	0	1	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................ATTCGTCTGGAAGAGGTTGAGCTGAAT..............	27	1	1.00	1	0	0	0	0	0	0	0	0	0	1
......................................................................................................................................................................................................................................................................GGTTGAGCTGAATGCCGTTGCC.....	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..........................GAAGTCGTTGGAAGTCGAA....................................................................................................................................................................................................................................................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.................GACCATCAAGAAGTCGTTG.............................................................................................................................................................................................................................................................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................TTGAGCTGAATGCCGTTGCC.....	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................AGCTGAATGCCGTTGCCGGC..	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................CTGGAAGAGGTTGAGCTGAAT..............	21	1	1.00	1	0	0	0	0	0	0	0	0	0	1
.................................................................................................................................................................................................................................................CTTGTCCATTCGTCTGGAAGAGGT........................	24	1	1.00	1	0	0	0	0	0	1	0	0	0	0
....................................................................................................................................................................................................................................................................GAGGTTGAGCTGAATGCCGTTGCC.....	24	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................GAACTTGTCCATTCGTCTG................................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................TGGAAGAGGTTGAGCTGAATGCC...........	23	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.....................ATCAAGAAGTCGTTGGAAGTC.......................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	1	0	0	0	0	0	0	0

droPer2

GCATTGT-CAAGCTCGAGACCATCAAGAAGTCTTTGGAAGTCGAAGTCAAGGTAAGCGTGTACT-------TTGGGA-C-----------------------------------------TATCTTGGACATTCCAACATTACT----------------------------------------TA------------TCG-TTTAT-GTGTGTTTGAT-------T---C--GATTAGAACTTGTCCATTCGTCTGGAAGAGGTTGAGCTGAATGCCGTTGCCGGCAG	Size	Hit Count	Total Norm	Total	M021 Embryo	M042 Female-body	V042 Embryo	V050 Head	V057 Head	V111 Male-body
.......................................................................................................................................................................................................................................................................GTTGAGCTGAATGCCGTTGCC.....	21	1	4.00	4	4	0	0	0	0	0
................................................................................................................................................................................................................................................ACTTGTCCATTCGTCTGGA..............................	19	1	4.00	4	4	0	0	0	0	0
...............................................................................................................................................................................................................................................AACTTGTCCATTCGTCTG................................	18	1	4.00	4	4	0	0	0	0	0
.......................................................................................................................................................................................................................................................CATTCGTCTGGAAGAGGTT.......................	19	1	2.00	2	2	0	0	0	0	0
....................CATCAAGAAGTCTTTGGAAGTC.......................................................................................................................................................................................................................................................	22	1	2.00	2	2	0	0	0	0	0
.......................................................................................................................................................................................................................................................................GTTGAGCTGAATGCCGTTGCCGGCA.	25	1	1.00	1	1	0	0	0	0	0
....................................................................................................................................................................................................................................................GTCCATTCGTCTGGAAGAGGTTGAGCT..................	27	1	1.00	1	1	0	0	0	0	0
................................................................................................................................................................................................................................................ACTTGTCCATTCGTCTGGG..............................	19	1	1.00	1	1	0	0	0	0	0
.............................................................................................................................................................................................................................................AGAACTTGTCCATTCGTCTGG...............................	21	1	1.00	1	0	0	1	0	0	0
.............................................................................................................................................................................................................................................AGAACTTGTCCATTCGTCTGGAAGAGGT........................	28	1	1.00	1	0	0	0	0	0	1
....................................................................................................................................................................................................................................................................GAGGTTGAGCTGAATGCCGTTGCC.....	24	1	1.00	1	1	0	0	0	0	0
........................AAGAAGTCTTTGGAAGTCGAAGTC.................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	1

droWil2

GCATTGT-TAAGCTGGAAACCATCAAGAAGTCTTTGGAAGTCGAAGTCAAGGTAAGTT--TACC-----TTA-CACACAACATT--------------CACTGTA--------------------------TCTCAATC----------------------------------------------------TCATTC-TCC-TTTTT-CTCTTTCTCGC-------C---C--TGTTAGAACTTGTCCATTCGCCTGGAGGAGGTTGAGCTGAATGCCGTTGCTGGTAG	Size	Hit Count	Total Norm	Total	M020 Head	M045 Female-body	V117 Male-body	V118 Embryo	V119 Head
..ATTGT-TAAGCTGGAAACC............................................................................................................................................................................................................................................................................	18	1	3.00	3	3	0	0	0	0
.............................GTCTTTGGAAGTCGAAGTC.................................................................................................................................................................................................................................................	19	1	2.00	2	2	0	0	0	0
.................................................................................................................................................................................................................................................................GAGGAGGTTGAGCTGAATGCC...........	21	1	2.00	2	2	0	0	0	0
...............................................................................................................................................................................................................................................AACTTGTCCATTCGCCTGGAGG............................	22	1	2.00	2	2	0	0	0	0
............................................................................................................................................................................................................TTT-CTCTTTCTCGC-------C---C--TGTTAG..................................................	22	1	1.00	1	0	0	0	1	0
.........................................................................................................................................................................................................................................................................TGAGCTGAATGCCGTTGCT.....	19	1	1.00	1	0	0	0	1	0
......................TCAAGAAGTCTTTGGAAGTCGAAGTC.................................................................................................................................................................................................................................................	26	1	1.00	1	1	0	0	0	0
......T-TAAGCTGGAAACCATCAAGA.....................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	1	0	0
GCATTGT-TAAGCTGGAAACCATCAAG......................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	1	0
................................................................................................................................................................................................................................................................GGAGGAGGTTGAGCTGAATGC............	21	1	1.00	1	1	0	0	0	0
.................AACCATCAAGAAGTCTTTGGA...........................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	1	0
..............................................................................................................................................................................................................................................................CTGGAGGAGGTTGAGCTGAATGCC...........	24	1	1.00	1	1	0	0	0	0
.........................................................................................................................................................................................................................................................TTCGCCTGGAGGAGGTTGAGCTG.................	23	1	1.00	1	0	1	0	0	0
................AAACCATCAAGAAGTCTTTGGA...........................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	1	0
........................AAGAAGTCTTTGGAAGTCGAAGT..................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	1	0	0
.............................................................................................................................................................................................................................................AGAACTTGTCCATTCGCCTG................................	20	1	1.00	1	0	1	0	0	0
....................CATCAAGAAGTCTTTGGA...........................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	1	0
.........................................................................................................................................................................................................................................................................TGAGCTGAATGCCGTTGCTGGT..	22	1	1.00	1	0	0	0	1	0
....................CATCAAGAAGTCTTTGGAAG.........................................................................................................................................................................................................................................................	20	1	1.00	1	1	0	0	0	0
........................................................................................................................................................................................................................................................................TTGAGCTGAATGCCGTTGC......	19	1	1.00	1	0	0	0	1	0
........................AAGAAGTCTTTGGAAGTCGAAGTC.................................................................................................................................................................................................................................................	24	1	1.00	1	1	0	0	0	0
.........AAGCTGGAAACCATCAAGAAGTCT................................................................................................................................................................................................................................................................	24	1	1.00	1	1	0	0	0	0
......................................................................................................................................................................................................................................................CCATTCGCCTGGAGGAGGTTGAGC...................	24	1	1.00	1	0	0	0	1	0
.................................................................................................................................................................................................................................................CTTGTCCATTCGCCTGGAGGA...........................	21	1	1.00	1	0	0	0	1	0
....................CATCAAGAAGTCTTTGGAAGT........................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	1	0
...........................AAGTCTTTGGAAGTCGAAGTCAAGAAC...........................................................................................................................................................................................................................................	27	1	1.00	1	1	0	0	0	0
.....................ATCAAGAAGTCTTTGGAAGTC.......................................................................................................................................................................................................................................................	21	1	1.00	1	1	0	0	0	0
.................................................................................................................................................................................................................................................................GAGGAGGTTGAGCTGAATGCCGTTGCT.....	27	1	1.00	1	0	0	0	1	0
....................CATCAAGAAGTCTTTGGAAGTC.......................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	1	0
..............................................................................................................................................................................................................................................GAACTTGTCCATTCGCCTGGAGGAG..........................	25	1	1.00	1	1	0	0	0	0
.CATTGT-TAAGCTGGAAAC.............................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	1	0
..ATTGT-TAAGCTGGAAACCATCAAGAA....................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	1	0
.......................................................................................................................................................................................................................................................................GTTGAGCTGAATGCCGTTGCT.....	21	1	1.00	1	1	0	0	0	0
..............GGAAACCATCAAGAAGTCTTTGGA...........................................................................................................................................................................................................................................................	24	1	1.00	1	0	1	0	0	0
....TGT-TAAGCTGGAAACCATCAAG......................................................................................................................................................................................................................................................................	22	1	1.00	1	1	0	0	0	0
.................AACCATCAAGAAGTCTTTGGAAGTCGAA....................................................................................................................................................................................................................................................	28	1	1.00	1	0	0	0	1	0
........TAAGCTGGAAACCATCAAGAAGTCTTTG.............................................................................................................................................................................................................................................................	28	1	1.00	1	0	0	1	0	0
.......................................................................................................................................................................................................................................................................GTTGAGCTGAATGCCGTTGCTGGTA.	25	1	1.00	1	0	0	0	1	0

droVir3

GCAGCAT-CAAGCTGGAGACCATCAAGAAGTCTTTGGAAGTCGAAGTCAAGGTAAGCGACAACT-----CACTGCGA-GATCAATGCA----AAAGTAGATAATA--------------T------------GT---------------------------------------------------------TGATACCATGCACATT------------------TC---CATGCACAGAACTTGTCCATTCGCCTGGAGGAAGTGGAGTTGAACGCCGTTGCCGGTAG	Size	Hit Count	Total Norm	Total	M027 Male-body	M028 Head	M047 Female-body	M061 Embryo	SRR060654 Ovary	SRR060655 Testis	SRR060656 Ovary	SRR060657 Testis	SRR060658 Ovary	SRR060659 Testis	SRR060660 Ovary	SRR060661 Embryo	SRR060662 Embryo	SRR060663 Embryo	SRR060664 Male-body	SRR060665 Female-body	SRR060666 Male-body	SRR060667 Female-body	SRR060668 Male-body	SRR060669 Female-body	SRR060670 Testis	SRR060671 Male-body	SRR060672 Female-body	SRR060673 Ovary	SRR060674 Ovary	SRR060675 Ovary	SRR060676 Ovary	SRR060677 Ovary	SRR060678 Testis	SRR060679 Testis	SRR060680 Testis	SRR060681 Testis	SRR060682 Embryo	SRR060683 Testis	SRR060684 Embryo	SRR060685 Embryo	SRR060686 Embryo	SRR060687 Embryo	SRR060688 Ovary	SRR060689 Testis	SRR1106712 embryo_0-2h	SRR1106713 embryo_0-2h	SRR1106714 embryo_2-4h	SRR1106715 embryo_4-6h	SRR1106716 embryo_4-6h	SRR1106717 embryo_6-8h	SRR1106718 embryo_6-8h	SRR1106719 embryo_8-10h	SRR1106720 embryo_8-10h	SRR1106721 embryo_10-12h	SRR1106722 embryo_10-12h	SRR1106723 embryo_12-14h	SRR1106724 embryo_12-14h	SRR1106725 embryo_14-16h	SRR1106726 embryo_14-16h	SRR1106727 larvae	SRR1106728 larvae	SRR1106729 mixed whole adult body	SRR1106730 embryo_16-30h	V047 Embryo	V053 Head	V116 Male-body	GSM1528803 follicle cells
.................GACCATCAAGAAGTCTTTGGA...........................................................................................................................................................................................................................................................	21	1	4.00	4	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................TTGTCCATTCGCCTGGAGGAAGTGGA.....................	26	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................GACCATCAAGAAGTCTTTGGAA..........................................................................................................................................................................................................................................................	22	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......T-CAAGCTGGAGACCATCAAG......................................................................................................................................................................................................................................................................	20	1	2.00	2	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................GGAGGAAGTGGAGTTGAACGCCGT.........	24	1	2.00	2	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................TGGAGTTGAACGCCGTTGCCGGTA.	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................TTCGCCTGGAGGAAGTGGAG....................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................CTTGTCCATTCGCCTGGAG.............................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................AGTTGAACGCCGTTGCCGGT..	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
....................................................................................................................................................................................................................................................................GAAGTGGAGTTGAACGCCGTTGCC.....	24	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................ATCAAGAAGTCTTTGGAA..........................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....CAT-CAAGCTGGAGACCATCAAGA.....................................................................................................................................................................................................................................................................	23	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................AAGAAGTCTTTGGAAGTCGAAG...................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............GGAGACCATCAAGAAGTCTTTGGAAGT........................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............GGAGACCATCAAGAAGTC.................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................AGAAGTCTTTGGAAGTCGAAGTC.................................................................................................................................................................................................................................................	23	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................GAGTTGAACGCCGTTGCCGGTA.	22	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................AAGTCTTTGGAAGTCGAAGTCAAGA.............................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................AGAAGTCTTTGGAAGTCG......................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0
.........................................................................................................................................................................................................................................................TTCGCCTGGAGGAAGTGGAGC...................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................AGAACTTGTCCATTCGCCTGGAGGAAG.........................	27	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................TTCGCCTGGAGGAAGTGGAGTT..................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0
....................................................................................................................................................................................................................................................GTCCATTCGCCTGGAGGAAGTGGAGT...................	26	1	1.00	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................GACCATCAAGAAGTCTTTGGAAGT........................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................AAGTCTTTGGAAGTCGAAGTC.................................................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....AT-CAAGCTGGAGACC............................................................................................................................................................................................................................................................................	15	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................AACTTGTCCATTCGCCTGGA..............................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
..................................................................................................................................................................................................................................................................AGGAAGTGGAGTTGAACGCCGTTGCC.....	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................ATTCGCCTGGAGGAAGTG.......................	18	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................CATTCGCCTGGAGGAAGT........................	18	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................TCTTTGGAAGTCGAAGTC.................................................................................................................................................................................................................................................	18	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................ATCAAGAAGTCTTTGGAAGTCGAAGTC.................................................................................................................................................................................................................................................	27	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................ATCAAGAAGTCTTTGGAAGT........................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................GAGGAAGTGGAGTTGAACGCCGTT........	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................AGAAGTCTTTGGAAGTCGAA....................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................CATTCGCCTGGAGGAAGTGGAGTT..................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................AGAACTTGTCCATTCGCCTGGAG.............................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0
.........................AGAAGTCTTTGGAAGTCGAAGTCAAG..............................................................................................................................................................................................................................................	26	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
GCAGCAT-CAAGCTGGAGACC............................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............GGAGACCATCAAGAAGTCTTTGGAAG.........................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................GACCATCAAGAAGTCTTTGGAAGTC.......................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....AT-CAAGCTGGAGACCATCAAGAAGTC.................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droMoj3

GCTGCGT-CAAGCTGGAGACCATCAAGAAGTCTTTGGAAGTCGAAGTCAAGGTAGGCGCCA-GACGAAAAC---------------------------------------------------TCTTAAATATTCTC---TTAC--------------------------------------------TATAT------ATGTATATC--------------GTTATCTTCC--GCACAGAACTTGTCCATTCGCCTGGAGGAAGTTGAGCTGAACGCCGTTGCCGGTAG	Size	Hit Count	Total Norm	Total	M046 Female-body	V041 Embryo	V049 Head	V056 Head	M060 Embryo	V110 Male-body
....................................................................................................................................................................................................................................................GTCCATTCGCCTGGAGGAAGT........................	21	1	1.00	1	1	0	0	0	0	0
.....GT-CAAGCTGGAGACCATCAAGAAGTC.................................................................................................................................................................................................................................................................	26	1	1.00	1	1	0	0	0	0	0
...........................AAGTCTTTGGAAGTCGAAG...................................................................................................................................................................................................................................................	19	1	1.00	1	1	0	0	0	0	0
.......................................................................................................................................................................................................................................................................GTTGAGCTGAACGCCGTTGCCGGTA.	25	1	1.00	1	0	0	0	0	0	1
............................................................................................................................................................................................................................................................GCCTGGAGGAAGTTGAGCT..................	19	1	1.00	1	0	0	0	0	0	1
................................TTTGGAAGTCGAAGTCAAGA.............................................................................................................................................................................................................................................	20	1	1.00	1	1	0	0	0	0	0
...................................................................................................................................................................................................................................................TGTCCATTCGCCTGGAGGAAGT........................	22	1	1.00	1	1	0	0	0	0	0
....................................................................................................................................................................................................................................................................GAAGTTGAGCTGAACGCCGT.........	20	1	1.00	1	1	0	0	0	0	0
...............GAGACCATCAAGAAGTCTTTGGA...........................................................................................................................................................................................................................................................	23	1	1.00	1	1	0	0	0	0	0
.................GACCATCAAGAAGTCTTTGGAAGTC.......................................................................................................................................................................................................................................................	25	1	1.00	1	1	0	0	0	0	0
.....................ATCAAGAAGTCTTTGGAAGT........................................................................................................................................................................................................................................................	20	1	1.00	1	1	0	0	0	0	0
....................................................................................................................................................................................................................................................................GAAGTTGAGCTGAACGCCGTT........	21	1	1.00	1	0	0	0	0	0	1
................................................................................................................................................................................................................................................................GGAGGAAGTTGAGCTGAAC..............	19	1	1.00	1	0	0	0	0	0	1
............................AGTCTTTGGAAGTCGAAGTCAAGA.............................................................................................................................................................................................................................................	24	1	1.00	1	1	0	0	0	0	0
.........................................................................................................................................................................................................................................................TTCGCCTGGAGGAAGTTGAGCTGAACG.............	27	1	1.00	1	1	0	0	0	0	0
........CAAGCTGGAGACCATCAAGA.....................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	1
.................................TTGGAAGTCGAAGTCAAG..............................................................................................................................................................................................................................................	18	1	1.00	1	1	0	0	0	0	0
...................................................................................................................................................................................................................................................TGTCCATTCGCCTGGAGGAAGTA.......................	23	1	1.00	1	0	0	0	0	0	1
...................................................................................................................................................................................................................................................TGTCCATTCGCCTGGAGGAAGTTGAGCT..................	28	1	1.00	1	0	0	0	0	1	0
.........AAGCTGGAGACCATCAAGAAGTC.................................................................................................................................................................................................................................................................	23	1	1.00	1	1	0	0	0	0	0

droGri2

GCATTGT-CAAGCTGGAGACCATCAAGAAGTCATTGGAAGTCGAAGTCAAGGTATGT--CCAGA-----TCTCTGAT-C---------AATTAA--------------------------------------TCTC---TTAT-AGA----T-TAA-------------------------------------ACTACACCC-------------------ATTATC---CATCCATAGAACTTGTCCATTCGCTTGGAGGAAGTGGAGCTGAACGCTGTTGCCGGTAG	Size	Hit Count	Total Norm	Total	M041 Female-body	V109 Male-body
......................................................................................................................................................................................................................................................CCATTCGCTTGGAGGAAGTGGAGCT..................	25	1	1.00	1	0	1
......................TCAAGAAGTCATTGGAAGTCGAAGTC.................................................................................................................................................................................................................................................	26	2	0.50	1	1	0
......................TCAAGAAGTCATTGGAAGTCG......................................................................................................................................................................................................................................................	21	2	0.50	1	1	0
.........................AGAAGTCATTGGAAGTCGAAGTC.................................................................................................................................................................................................................................................	23	2	0.50	1	0	1

dsi_13307

3l:8516743-8516821 -

Candidate

Unknown

Predicted structure

Flybase annnotation

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads

-12.9	-12.4	-12.3