ID:

dsi_13294

 Coordinate:

3l:7760860-7761023 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-15.9 -15.9 -15.8

Flybase annnotation

exon [3l_7760589_7760859_+]; CDS [3l_7760589_7760859_+]; CDS [3l_7761024_7761407_+]; exon [3l_7761024_7762029_+]; intron [3l_7760860_7761023_+]

Repeatable elements

NameClassFamilyStrand
AT_richLow_complexityLow_complexity+

Sense Strand Reads

##################################################--------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
GTGGATCCGCCTTCCACAGACCACTGGATCCCTCAGGGAAACCCATTCCGGTAAGATAAAATTAAATTAATTTCAATATTACAAGTAGATATTTGATTTAATAATAAATATATCAATATATACTATCATATATATCATTTGAATCTGAAAATAACTCAATTTAAACAGCTTTCTCATAGATTAATAATCTTATTTTCCTTATTTATCATTGCAGATACCCATGGGTCATAATTTCATGCCGTCGCAGCTGCAATTTGAGTTCCT
**************************************************((((((((((((((((((((......((((...)))).....)))))))))).............(((((((......)))))))..(((((((.(((.......))))))))))............(((((...)))))...........)))))).))))..************************************************** 		Read size # Mismatch Hit Count Total Norm Total M024
male body		 M053
female body
 O001
Testis
 O002
Head
 SRR553488
RT_0-2 hours eggs
..................................................................................................................................................................................................................................CATAATTTCATGCCGTCGCAGCT............... 23 0 1 1.00 1 1 0 0 0 0
.....................................................................................................................................................................................................................................AATTTCATGCCGTCGCAGC................ 19 0 1 1.00 1 1 0 0 0 0
...................................................................................................................................................................................................................................ATAATTTCATGCCGTCGCAGCTGC............. 24 0 1 1.00 1 0 1 0 0 0
............................................................................................................TATATCAATATATACTAT.......................................................................................................................................... 18 0 1 1.00 1 0 0 1 0 0
.....................................................................................................................ATATACTATCATATATAT................................................................................................................................. 18 0 1 1.00 1 0 0 0 1 0
.................................................................................CAGGTAGATATTTGAT....................................................................................................................................................................... 16 1 2 0.50 1 0 0 0 0 1

Anti-sense strand reads

CACCTAGGCGGAAGGTGTCTGGTGACCTAGGGAGTCCCTTTGGGTAAGGCCATTCTATTTTAATTTAATTAAAGTTATAATGTTCATCTATAAACTAAATTATTATTTATATAGTTATATATGATAGTATATATAGTAAACTTAGACTTTTATTGAGTTAAATTTGTCGAAAGAGTATCTAATTATTAGAATAAAAGGAATAAATAGTAACGTCTATGGGTACCCAGTATTAAAGTACGGCAGCGTCGACGTTAAACTCAAGGA
**************************************************((((((((((((((((((((......((((...)))).....)))))))))).............(((((((......)))))))..(((((((.(((.......))))))))))............(((((...)))))...........)))))).))))..************************************************** 		Read size # Mismatch Hit Count Total Norm Total O002
Head
 SRR553485
Chicharo_3 day-old ovaries
 SRR553486
Makindu_3 day-old ovaries
 O001
Testis
 SRR553487
NRT_0-2 hours eggs
 M053
female body
 SRR553488
RT_0-2 hours eggs
 SRR618934
dsim w501 ovaries
 GSM343915
embryo
 M025
embryo
 M024
male body
....................................................................................................................................................................................................GGAATAAATAGTAACGTC.................................................. 18 0 3 32.33 97 54 14 13 0 1 2 2 1 7 3 0
....................................................................................................................................................................................................GGAATAAATAGTAACG.................................................... 16 0 3 15.67 47 0 15 23 0 8 0 1 0 0 0 0
...................................................................................................................................................................................................AGGAATAAATAGTAACGT................................................... 18 0 1 9.00 9 3 0 0 6 0 0 0 0 0 0 0
....................................................................................................................................................................................................GGAATAAATAGTAAC..................................................... 15 0 4 8.75 35 0 22 10 0 1 0 0 2 0 0 0
....................................................................................................................................................................................................GGAATAAATAGTAACGT................................................... 17 0 3 8.00 24 0 8 13 0 0 0 2 1 0 0 0
...................................................................................................................................................................................................AGGAATAAATAGTAACGTC.................................................. 19 0 1 4.00 4 4 0 0 0 0 0 0 0 0 0 0
....................................................................................................TATTATTTATATAGGTATAT................................................................................................................................................ 20 1 1 3.00 3 0 0 0 0 0 1 0 0 0 1 1
...................................................................................................................................................................................................AGGAATAAATAGTAACG.................................................... 17 0 1 3.00 3 0 3 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................AAGGAATAAATAGTAACGT................................................... 19 0 1 2.00 2 1 0 0 1 0 0 0 0 0 0 0
.....................................................................................................................................................................................................GAATAAATAGTAACGTC.................................................. 17 0 3 1.67 5 0 1 1 0 1 0 1 1 0 0 0
....................................................................................................TATTATTTATATAGTCATAT................................................................................................................................................ 20 1 2 1.00 2 0 0 0 0 0 2 0 0 0 0 0
..................................................................................................................................................................................................AAGGAATAAATAGTAAC..................................................... 17 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................AAGGAATAAATAGTAACG.................................................... 18 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0
.................................................................................................................................................................................................AAAGGAATAAATAGTAACGTC.................................................. 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................................................................AAAAGGAATTAATGGTAACGT................................................... 21 2 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0
..................................................................................................................................................................................................AAGGAATAAATAGTAA...................................................... 16 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................AAAAAGGAATTAATGGTAACGT................................................... 22 3 5 0.80 4 0 1 0 0 0 0 3 0 0 0 0
.....................................................................................................................................................................................................GAATAAATAGTAACG.................................................... 15 0 3 0.67 2 0 0 0 0 1 0 0 1 0 0 0
.....................................................................................................................................................................................................GAATAAATAGTAACGT................................................... 16 0 3 0.67 2 0 1 0 0 1 0 0 0 0 0 0
...................................................................................................................................................................................................AGGAATAAATAGTAAC..................................................... 16 0 2 0.50 1 0 1 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................AGGGAATAAATAGTAAC..................................................... 17 1 4 0.50 2 0 1 1 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................AGGAATAAATAGTAA...................................................... 15 0 2 0.50 1 0 0 1 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................AATAAATAGTAACGTC.................................................. 16 0 3 0.33 1 0 0 1 0 0 0 0 0 0 0 0
....................................................................................................TATTATTTATATAGGCATATTTG............................................................................................................................................. 23 3 3 0.33 1 0 0 0 0 0 1 0 0 0 0 0
..................................................................................................................................................................................................AGGGAATAAATAGTAACGT................................................... 19 1 3 0.33 1 0 0 1 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................ACGGGAATAAATAGTAACGTC.................................................. 21 2 3 0.33 1 0 0 0 0 0 0 0 1 0 0 0
....................................................................................................TATTATTTATATAGGCATATA............................................................................................................................................... 21 2 10 0.30 3 0 0 0 0 0 3 0 0 0 0 0
....................................................................................................................................................................................................GGAATAAATAGTGACGTC.................................................. 18 1 4 0.25 1 0 0 0 0 0 1 0 0 0 0 0
.......................................................................................................................................................................................................ATAAATAGTAACGTC.................................................. 15 0 4 0.25 1 0 0 0 0 0 0 0 1 0 0 0
....................................................................................................TATTATTTATATAGGTATATT............................................................................................................................................... 21 2 13 0.23 3 0 0 0 0 0 1 0 0 0 2 0
....................................................................................................TATTATTTATATAGGGATAT................................................................................................................................................ 20 2 6 0.17 1 0 0 0 0 0 1 0 0 0 0 0
................................................................................................................................................................................................AAAAGGAATTAATGGTAACGTGT................................................. 23 3 6 0.17 1 0 0 0 0 0 0 1 0 0 0 0
.....................................................................................................................................................................................................GAATAAGTAGTAACGT................................................... 16 1 8 0.13 1 0 1 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................................................ATGGGTACCCGGTAGTA................................ 17 2 8 0.13 1 0 0 0 0 0 0 0 1 0 0 0
.....................................................................................................ATTATTTATATAGGCATATTTG............................................................................................................................................. 22 3 8 0.13 1 0 0 0 0 0 1 0 0 0 0 0
...............TGTCTGGTGGCCTAG.......................................................................................................................................................................................................................................... 15 1 8 0.13 1 0 1 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................GGAATAAATGGTAACGT................................................... 17 1 9 0.11 1 0 0 0 0 0 0 0 1 0 0 0
....................................................................................................TATTATTTATATAGTCATATT............................................................................................................................................... 21 2 9 0.11 1 0 0 0 0 0 1 0 0 0 0 0
..................................................................................................................................................................................................AGGGAATAAATAGTAA...................................................... 16 1 11 0.09 1 0 0 1 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................AGGGAATAAATAGTA....................................................... 15 1 16 0.06 1 0 1 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................................................ATGGGTACCCGGTAGT................................. 16 2 20 0.05 1 0 0 0 0 0 0 0 1 0 0 0
....................................................................................................................................................................................................AGAATAAATAGTAAC..................................................... 15 1 20 0.05 1 0 1 0 0 0 0 0 0 0 0 0

Generated: 04/24/2015 at 10:29 AM