dsi_13288

TTTGGTTCTGGTTGTGTCGCTTCCGTCTGAAATTCCATATCCCAAACTCCAAACGAACATAGCCAATTCCCAAGTACTTTTCTTAGTTGCGCTTTAATTTCGGATTCTTGTATTTGAGTTTAGCAGCCACTTTGATTTTATACACCTAGTTTACACTTTAAGTAGTCCAATTTTCTAATGATATTCCTTTGTTTCCACAGAGGGCAACCCCGTCACAGGCGAGGGCTACAAGGCCAACGACTTTACCCAG ************************************************....(((((.((...........(((....((..(((.(((((.....(((((((......)))))))...))).)).)))..)).....)))..(((.((........)).))).....................)).)))))......************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M024 male body	SRR553487 NRT_0-2 hours eggs	SRR553486 Makindu_3 day-old ovaries	SRR618934 dsim w501 ovaries	SRR553488 RT_0-2 hours eggs	M053 female body
.............................................................................TGTTCTTAGTTGCGCTTGAATT.......................................................................................................................................................	22	2	1	2.00	2	0	2	0	0	0	0
TTTGGTTCTGGTTGTGTCGCTTCCGTC...............................................................................................................................................................................................................................	27	0	1	1.00	1	1	0	0	0	0	0
.....................................................................................................................................................................................................................CACAGGCGAGGGCTACAA...................	18	0	1	1.00	1	1	0	0	0	0	0
..............................................................................................TAATTTCGGACTGTTGTAT.........................................................................................................................................	19	2	2	0.50	1	0	0	1	0	0	0
.....................................................................................................................................................................................TCTTTCTTCGTTTCCACAGAG................................................	21	3	4	0.25	1	0	0	0	0	1	0
........................................................................................................................................................................................................................................GCCAACGACTATACC...	15	1	11	0.18	2	0	0	0	2	0	0
...................................................................................................................................................................................................CACAGAGGGCAACCC........................................	15	0	10	0.10	1	0	0	0	1	0	0
............................................................................................................................................................................................................................GAGGGCTACAAGATCTACGA..........	20	3	15	0.07	1	0	0	0	0	0	1

AAACCAAGACCAACACAGCGAAGGCAGACTTTAAGGTATAGGGTTTGAGGTTTGCTTGTATCGGTTAAGGGTTCATGAAAAGAATCAACGCGAAATTAAAGCCTAAGAACATAAACTCAAATCGTCGGTGAAACTAAAATATGTGGATCAAATGTGAAATTCATCAGGTTAAAAGATTACTATAAGGAAACAAAGGTGTCTCCCGTTGGGGCAGTGTCCGCTCCCGATGTTCCGGTTGCTGAAATGGGTC ************************************************....(((((.((...........(((....((..(((.(((((.....(((((((......)))))))...))).)).)))..)).....)))..(((.((........)).))).....................)).)))))......************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	SRR618934 dsim w501 ovaries	M023 head	M024 male body	SRR553485 Chicharo_3 day-old ovaries	SRR902009 testis
........................................................................................................................................................................................................TCCCGTTGGGAGAGTGTC................................	18	2	3	0.33	1	1	0	0	0	0
.......................................................................................................................................................................................................................................CCCGTTGCTGAAATGAGT.	18	2	6	0.17	1	0	1	0	0	0
..........................................................................................................................................ATATGTGGCTCAAAT.................................................................................................	15	1	7	0.14	1	1	0	0	0	0
.......................................................................................................................................................................................................................................CCGGTTGCTGACATAGATC	19	3	13	0.08	1	0	0	1	0	0
.......................................................................................................................CATCGTCGGTGAAACAACAA...............................................................................................................	20	3	20	0.05	1	0	0	0	0	1
....................................TATTGGGTTAGAGGTTT.....................................................................................................................................................................................................	17	2	20	0.05	1	0	0	0	1	0

Species	Coordinate	ID	Alignment
droSim2	3r:13683550-13683799 +	dsi_13288	TTTGG-------------------------------TTCTGGTTGTGTCGCTTCCG--------------------------TCTGAAA----TTCC--------------------------------------ATATCCC------AAACTCCAAAC-GAACATA--------------------------------------------------------------------------------------------------------------GCCAATTCCCAAGTACTTTTCT-------------TAGTTGCGCTT-----------------------------------------T-----------------------------------A--ATT-----------------------------------------------------------------------------------------------------------------TCGGATTCTTGTATTTGAGTT------------------------TAGCA-----------GCCACTTTGATTTTATACACCTAG--------------------------------------TTTA-C--------------ACTTT----A---AG---TA------------------------------GTCCAA-TTTTCTAAT----------------GA----TATTC------C------TTTGTTTCCACAGAGGGCAACCCCGTCACAGGCGAGGGCTACAAGGC------CAACGACTTT--------------------ACCCAG
droSec2	scaffold_0:14547462-14547699 +		TTTGG-------------------------------TTCTGGTTGTGTCGATTCCG--------------------------TCTGAAA----TTCT--------------------------------------ATATCCC------AAACTCCAAAC-GAACATA--------------------------------------------------------------------------------------------------------------GCCAATCCCCAA------------------------TCCC-CGCTT-----------------------------------------T-----------------------------------A--ATT-----------------------------------------------------------------------------------------------------------------TCGAATTCTTATATTTGAGTT------------------------TAGCA-----------GCCACTTTGATTTTATACACCTAG--------------------------------------TTTA-T--------------ATTTT----A---AG---TA------------------------------GTCAAA-TTTTCTAAT----------------GA----TATTC------C------TTTGTTTCCACAGAGGGCAACCCCGTCACAGGCGAGGGCTACAAGGC------CAACGACTTT--------------------ACACAG
dm3	chr3R:7416974-7417215 -		TTTGG-------------------------------TTCTGGTTGT--CGCTTCCG--------------------------TCTGAAA----TTCC--------------------------------------ATACTCC------AAACTCCAAAC-GAACATA--------------------------------------------------------------------------------------------------------------GCCAATCCCCAAGTACTTTTAT-------------TAGTTGCGCTT-----------------------------------------T-----------------------------------A--ATT-----------------------------------------------------------------------------------------------------------------TCGGATTCT------------------------------------TAGAA-----------ACCAATTTGATTTTATACACCTAG--------------------------------------TTTG-C--------------ATTCT----A---AG---TA------------------------------GTCAAA-TTTTCTAAT----------------GA----TATTC------C------TTTGTTTTCACAGAGGGCAACCCCGTCACAGGCGAGGGCTACAAGGTCGTAGCCAACGAGTAT--------------------TCCCAG
droEre2	scaffold_4770:14202890-14203132 +		TTTGG-------------------------------TTCTGGTTGT--CGCTTCCA---------------------------ATCAAA----TTCC--------------------------------------TTTTCCC------AAACTCCGA-CAGAACATA--------------------------------------------------------------------------------------------------------------GCCAATCCCTAAGTACTCTTAT-------------TAGTTGCGCCT-----------------------------------------C-----------------------------------A--AT-----------------------------------------------------------------------------------ATGAGC-----------------------TTTCGTTTTCT----------------------------------------T-----------GCCACTTAAATTTGATGTAC-TAG--------------------------------------TTTG-G--------------TCTCA----A---AA---TA------------------------------GTCAAA-TTTGCTAAT----------------GA----AATTC------C------CTTATTTTCACAGAGGGCAACCCCGTAACAGGCGAGGGCTACAAGGCCGGAGGCAACGACTAT--------------------AACCAG
droYak3	3R:17006073-17006342 +		TTTGC-------------------------------TGCTGCTTGT--CGCATCC---------------------------TATGAAA----TTCC--------------------------------------GTTTCCC-----CCAACTCCCAACAGATCATA--------------------------------------------------------------------------------------------------------------GCCAATTCCTAAGTACTCTTAT-------------TAGTTGCGCCT-----------------------------------------C-----------------------------------A--ATTTTTATA-CTT----------TTTATATC----------------A-------------------------------------ATGA-------------------------TTTGGATTTCT----------------------------------------T-----------GCCACTTCGATTTTATATACC-AG--------------------------------------TTTT-T--------------TTCCGAATAGTGGAA---TA------------------------------GTGCAA-TTTTCTAATCTA-------------------TATTT------C------TTTATTTCCACAGAGGGCAACCCCGTCACAGGCGAGGGCTACAAGGCCGGAGGCAACGACTTT--------------------CACCAC
droEug1	scf7180000409797:1053086-1053299 -		TTTTG-------------------------------TTCTGCTTAC--CGTTTCCTA-----------------------------AAT----CTT-----------------------------------------TCCC-------CAAGTCA---C-AATTTAA--------------------------------------------------------------------------------------------------------------GCCAA-------------------------------------------------------------------------------------------------------------------------------ATA-AGT----------TTTTTAAG----------------TTCGA----GCTTCAT----------------------CCGA----------------------------------------------------------------------------------------G-----------------------TTTATAG-------------------------------TTTT-T--------------GATTT----G---AT---TTTCTTTAATAAT------------------TTTTCAA-TTAACTAATTT-----------------------TCTTTTT-CT-----TCCGTTTCCACAGAGGGCAACCCCGTCACAGGTGAGGGCTACAAGGCAGGAGGCAACGATTAC--------------------CACCAG
droBia1	scf7180000302136:3383314-3383614 +		TTTGG-------------------------------TTCTGGTTGC--CGCTTCCTAAACCTAAAAACA--------------------------------------------------------------------TTCC-------CAAATCCAA-C-TAGTTAA--------------------------------------------------------------------------------------------------------------GCCAGTCCCTAGGTATTTTTATACCAAATCATATTATCC------------------------------------------CTGCTGAAAAACCCACATCCA-------------------------------------------------------TCACAAAAATAATA-----------------------------------------------------------------------TTTTA-TTTAATATTTGAGTTGGAATCTCGCTAGAAGAATATAAA--------------T---AATTATGATCTA---------------------------------ATAATAA-------GCTTA-----------------ATTT----A---TG---T-------------------------------ATCCAA-TTTACTTATAT-----------------------TCTTTT--T------CCTATTTCCACAGAGGGCAATCCCGTCACCGGCGAGGGCTACAAGGCAGGAGCCAACGACTTC--------------------CACCAG
droTak1	scf7180000415310:8858-9156 -		TTTGG-------------------------------TTCTGGTTGC--CGCTTCCTAAACATAAACCTTATTAT-AAATCC-AAT---CTCACA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCC------------------------------------------TTGCTAAAAAACCCACAACCCTTCGTTATAAAGTCTTTCTTTA--CATTTTTAAGATTTTAAGTTACATTTTTAAGTCACAAACATA-------------------A---------------------------------------------------------------------------------------GACGAGGCTAAA--------------TAATA---------------------TT-ACAATCTTTCGATTTTTCTACGAATAA-------GTTTT-C--------------AATTT----A---AT---TT-------------------------------TAAAA-ATTACTCATAC--------------GA----TTTT-------T------CTTATTTCCGCAGAGGGAAACCCTGTCACAGGCGAGGGCTACAAGGCAGGAGCCAACGACTTC--------------------CACCAG
droEle1	scf7180000491080:2277728-2278085 +		ATTTG-------------------------------TC----------CGCTTTCCAAGCCTCATT------G---------CTTGAA-----TTC-----------------------------------------ATTCC------A-AGTCTGA-AAAAGTACCGTCGAAGCCTATTTTTCACCTCAAAATGGTATACTTAAGATTATTGAATTTTAATTGGTTCATGTCGAAGATACGATTAGATTACAAAAGATTTCAAT----------------------AGGTTCCTTGACACCAATCGAT----TCC------------------------------------------ACGCCCA-TATCCAACATTTT-------------------------------------------------------ACG-------TATTTCTTTGG----G-----------------------------------------------------TTTC------------GAA------------------------------------------------CTT-------------AGGCTAAGTTTACTT------------TTTATTAATTA-------GTTTG----------------AATTT----T----A----------------------------------TATTCAA-GATACTAATTG--------------------TATTC------T-AA---TTTTCCTCCACAGAGGGAAATCCTGTCACAGGCGAGGGCTACAAGGCAGGAGGCAACGACTTC--------------------CACCAG
droRho1	scf7180000779338:239160-239437 +		ACATG-------------------------------TTATGGTGGC--TACTTCCCTTT-------------GCT---TCCATTT----------------------------------TAAAAGA-----TTCCAA-----TTTTTT--------------------------------------------------------------------------CA---------------------------------------ATAAGTGCATTATTGCCTGACCCCAATCACT-------------------TCC------------------------------------------TTGCCCC-AATCCCACATTCA-------------------------------------------------------ACG-----------------------------TACTGGGAAAGATGTTA-----------AACCACTTTCTTATATATATTTT------------ATACATAAGCT------------------------AATTA-----------GCTAC-------------ATTTTA--------------------------------------T--------------------------------AC---AA------------------------------GTTCAA-GATACTAATTTA---------------------TTC------T--A---TAAATTTCCGCAGAGGGCAACCCCGTCACAGGCGAGGGCTACAAGGCAGGAGGCAACGATTTC--------------------CACCAG
droFic1	scf7180000453488:416782-417051 +		TGTGA-------------------------------TTCTGCTGGT--TACCACT----------------------------ATAAAA----TTTC------------------------AC------------AGATCTT------AAATTCGATAC-CGATATA-----------------------------------------------------------------------------------------GTTTTCAAA-----------------------------------------------AAGTTCCACATAAATTCCTTTCCTAAAATGAAACCTGCTTGTTTCCTAGATAAATATCAC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------T------------------------TATTA-----------GTTATTTTTAG---------------------------------------------------TTTGTAGAATTGATTTTT--TTATT----ATGAAA---TT------------------------------CATTGA-TTTACTAATATA-----------------------TTTTAT-C------TTTATATTCACAGAGGGTAATCCCGTCACAGGCGAGGGCTACAAGGCTGGAGCCAACGACTAC--------------------CACCAG
droKik1	scf7180000302355:793617-793839 -		ATG-G-------------------------------TTGTGTACA---CGCTTTCC--------------------------------------------------------------------------------TTTCCC------AAATTCC-A-CAAAGTAGC--------------------------------------------------------------------------------------------------------------GCCAATATCCCA--------------------------------------------------------------------------------------------------------------------------------------------TTTAA----------------ACTTTTTGTTTTTCGA----------------------GTTTT-AGATTG------------------------------------------------------------------ATT-----------------TAG-------A-----------------------------------------------TA-T--------------ATTTT----A---AGCCTTA----GTTAAAT-----------------------CC-TTTACAAATTTAG---ATTTATAATAATAAATCTTC------C------TTTTCATCTGCAGAGGGCAACCCCGTCACCGGCGAGGGCTACAAGGCCGGAGGCACCGATTAT--------------------CAGCAT
droAna3	scaffold_13340:13862663-13862955 -		ATGGG-------------------------------TTCTGGAGGTGGTCCTACCCA--------------------------AT---CCTAAGTCC----------------------------------------------------TAGTCA-----GAACAC-------------------------------------------------------------------------------------------------------------------ATCTTGAATTATTCTTTT-------------TAGTTTTTTTT-----------------------------------------T-----------------------------------A--GATCTTAAAAATT----------AG--------------------------------------AAACGGGAATGAT----ATTTA----------------------------------------------------------------------------AATCGGAATCTAAATAGTC---------------------TTCACAGTTTAATGATTTTTTTAAAT-TTATTTTGTAGCCTATA------------GA--------------------ACCTC------TATCTTCAGTTTAAA---TCTTCAAGTATTCTAATCCT-----------------------------TT-TATTTTAATCTTTCGCAGAGGGTAACCCCGTCACAGGAGAGGGCTACAAGCCAGGCGCAAATGACTTC--------------------CACCAG
droBip1	scf7180000396615:515320-515642 -		ATGGC-------------------------------TGCTGGAGGTGGTCCTACC-A--------------------------AT---CCCAAGTCCTTGTCCGTCCCCAAGTCACCTCCTAAAGAGAAATTCCAAG-----ATTTCC------------------TGTCAAAGTT---------------------------------------------------------------------------------------------------------------------TC-TTT-------------TAATTTTCTTC-----------------------------------------C-----------------------------------AAAAATCTTAA-AATT----------TG--------------------------------------AAACGCGAATGAC----ATTTA----------------------------------------------------------------------------AATCGGAACCCAAGTAGTG---------------------ATCACAGTATC-TATTCTTTTTATAT-TTATTTTAAAGTTTGTA------------GA--------------------ACCTC------TAGTTTAAGGTCATATCATCTTCAAGTCTTCTAATCCC-----------------------------TG-AA---TCATCTTCCACAGAGGGAAACCCCGTCACAGGTGAGGGCTACAAGCCAGGCGCAAACGACTTC--------------------CACCAG
dp5	Unknown_group_598:10953-11238 -		CCTAC-------------------------------ACCT----------------------ACACCGACA-----------CCTGCAC----TTTT---GCTCCACCTGAGCGATCTCTGGAGGA-----TCGGAG-----CTCTCT--------------------------------------------------------------------------TGGGAGG---------------------------------------A--------------------GTATCCTCCA-------------AAGAT-CGCTT-----------------------------------------T-----------------------------------A--GCTTCCACA-AGT----------AGATTGAG----------------AATGC----G-----------------------CTTAG----------------------------------------------------------------------------AATTA-----------GCT-------------AGGCTTAG--------------------------------------CCTA-C--------------ACTTC----A---AT---CTGCCATTTTAGT-----------------------GC-CTTACTAATCCCC---ATTTA---------------TTTTG-TT-----CTCTACTCAACAGAGGGAAATCCCGTGACCGGCGAGGGATACAGGGCCGGAGGAACGGACTACATTAAGGCCGCCGGCTCGACCAATAG
droPer2	scaffold_6:1335834-1336119 +		CCTAC-------------------------------ACCT----------------------ACACCGACA-----------CCTGCAC----TTTT---GCTCCACCTGAGCGATCTCTGGAGGA-----TCGTAG-----ATCTCT--------------------------------------------------------------------------TGGGAGG---------------------------------------A--------------------GTATCCTCCA-------------AAGAT-CGCCT-----------------------------------------T-----------------------------------A--GCTTCCACA-AGT----------AGATTGAG----------------AATGC----G-----------------------CTTAG----------------------------------------------------------------------------AATTA-----------GCT-------------AGGCTTAG--------------------------------------CCTA-C--------------ACTGC----A---AT---CTGCCATTTTAGT-----------------------GC-CTTACTAATCCCC---ATTTA---------------TTTTG-TT-----CTCTACTCAACAGAGGGAAATCCCGTGACCGGCGAGGGATACAGGGCCGGAGGAACGGACTACATTAAGGCCGCCGGCTCGACCAATAG
droWil2	scf2_1100000004902:7794372-7794562 -		CTG-C-------------------------------T-------GT------------------------------------------------------------------------------------------------------------------------A--------------------------------------------------------------------------------------------------------------GTCCAT----------------------------------------------------------------------------------------------------------------------------CCATT-AGT----------CAACTTAG----------------CACGCTTGCTTTTCAC----------------------TTGCC-TAATAG------------------------------------------------------------------TTT-----------ACT-------------ATATATAT--------------------------------------CTTA-C--------------TCTTG----A---TA---ATGCCTC------TTTTCC-----------------AA-TTTCCAATT----GTTAATTA---------------ATCTTTC-ATTTTCCACTTTTCACAGAGGGAAATCCCGTTACTGGCGAGGGCTATAAGTCAGGTGGCTCAGACT--------------------------CG
droVir3	scaffold_12855:504051-504185 +		CAC-TTTGTGAAAACATATTGTTTAGTATTGATGTAT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCTGAA-TGCACTAAT----GTCATTTA---------------ATTCA-TC-----ATTTTCATTACAGAAGGCAATCCCGTTACTGGTGAGGGCTACAAACCTGGTGCAACTGACTAT--------------------ATACAG
droMoj3	scaffold_6540:1851081-1851148 -		TT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTTTCCTAGAAGGAAATCCCGTTACCGGCGAGGGGTACAAAGCTGGCGGAACCGATTAT--------------------ATCCAG
droGri2	scaffold_14830:1335581-1335640 +		---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATAGATGGCAATCCCGTGACTGGTGAGGGCTACAAGGCTGGTGGAAACGATTAT--------------------ATACAA

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droSim2

TTTGG-------------------------------TTCTGGTTGTGTCGCTTCCG--------------------------TCTGAAA----TTCC--------------------------------------ATATCCC------AAACTCCAAAC-GAACATA--------------------------------------------------------------------------------------------------------------GCCAATTCCCAAGTACTTTTCT-------------TAGTTGCGCTT-----------------------------------------T-----------------------------------A--ATT-----------------------------------------------------------------------------------------------------------------TCGGATTCTTGTATTTGAGTT------------------------TAGCA-----------GCCACTTTGATTTTATACACCTAG--------------------------------------TTTA-C--------------ACTTT----A---AG---TA------------------------------GTCCAA-TTTTCTAAT----------------GA----TATTC------C------TTTGTTTCCACAGAGGGCAACCCCGTCACAGGCGAGGGCTACAAGGC------CAACGACTTT--------------------ACCCAG	Size	Hit Count	Total Norm	Total	M023 Head	M024 Male-body	M025 Embryo	M053 Female-body	O001 Testis	O002 Head	SRR553485 Ovary	SRR553486 Ovary	SRR553487 Ovary	SRR553488 Ovary	SRR618934 Ovary	V044 Embryo	SRR902008 Ovary	SRR902009 Testis	SRR1275487 Male larvae	SRR1275485 Male prepupae	SRR1275483 Male prepupae
TTTGG-------------------------------TTCTGGTTGTGTCGCTTCCG--------------------------TC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACAGGCGAGGGCTACAA.............................................	18	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACAGAGGGCAACCC..................................................................	15	10	0.10	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0

droSec2

TTTGG-------------------------------TTCTGGTTGTGTCGATTCCG--------------------------TCTGAAA----TTCT--------------------------------------ATATCCC------AAACTCCAAAC-GAACATA--------------------------------------------------------------------------------------------------------------GCCAATCCCCAA------------------------TCCC-CGCTT-----------------------------------------T-----------------------------------A--ATT-----------------------------------------------------------------------------------------------------------------TCGAATTCTTATATTTGAGTT------------------------TAGCA-----------GCCACTTTGATTTTATACACCTAG--------------------------------------TTTA-T--------------ATTTT----A---AG---TA------------------------------GTCAAA-TTTTCTAAT----------------GA----TATTC------C------TTTGTTTCCACAGAGGGCAACCCCGTCACAGGCGAGGGCTACAAGGC------CAACGACTTT--------------------ACACAG	Size	Hit Count	Total Norm	Total	M054 Female-body	V113 Male-body	V114 Embryo	V115 Head
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGAGGGCAACCCCGTCACAGGCGAG.....................................................	26	1	1.00	1	0	1	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCACAGGCGAGGGCTACAAGGC------CA..................................	25	1	1.00	1	0	1	0	0

dm3

TTTGG-------------------------------TTCTGGTTGT--CGCTTCCG--------------------------TCTGAAA----TTCC--------------------------------------ATACTCC------AAACTCCAAAC-GAACATA--------------------------------------------------------------------------------------------------------------GCCAATCCCCAAGTACTTTTAT-------------TAGTTGCGCTT-----------------------------------------T-----------------------------------A--ATT-----------------------------------------------------------------------------------------------------------------TCGGATTCT------------------------------------TAGAA-----------ACCAATTTGATTTTATACACCTAG--------------------------------------TTTG-C--------------ATTCT----A---AG---TA------------------------------GTCAAA-TTTTCTAAT----------------GA----TATTC------C------TTTGTTTTCACAGAGGGCAACCCCGTCACAGGCGAGGGCTACAAGGTCGTAGCCAACGAGTAT--------------------TCCCAG	Size	Hit Count	Total Norm	Total	GSM154618 Ovary	GSM154620 Ovary	GSM154621 Ovary	GSM154622 Ovary	GSM180328 Head	GSM180329 Mixed-body	GSM180330 Embryo	GSM180331 Embryo	GSM180332 Embryo	GSM180333 Embryo	GSM180334 Larvae	GSM180335 Disc	GSM180336 Pupae	GSM180337 S2	GSM231091 Ovary	GSM239041 Head	GSM239050 Head	GSM239051 S2	GSM239052 S2	GSM246084 Head	GSM266765 S2	GSM280082 Ovary	GSM280083 Ovary	GSM280084 Ovary	GSM280085 Testis	GSM280086 Ovary	GSM280087 S2-NP	GSM280088 S2-NP	GSM312995 Head	GSM313160 Head	GSM313161 Head	GSM313162 Head	GSM313163 Head	GSM313164 Head	GSM313165 Head	GSM343287 Embryo	GSM379050 Ovary	GSM379051 Ovary	GSM379052 Ovary	GSM379053 Ovary	GSM379054 Ovary	GSM379055 Ovary	GSM379056 Ovary	GSM379057 Ovary	GSM379058 Ovary	GSM379059 Ovary	GSM379060 Ovary	GSM379061 Ovary	GSM379062 Ovary	GSM379063 Ovary	GSM379064 Ovary	GSM379065 Ovary	GSM379066 Ovary	GSM379067 Ovary	GSM424739 S2	GSM424740 S2	GSM424741 S2	GSM467729 Female-body	GSM467730 Female-body	GSM467731 Female-body	M002 CS	M003 Male-body	M004 Male-body	M005 ML-DmD32	M006 ML-DmD32	M029 OSC	M030 OSC	M031 OSC	M032 S2-R+	M033 S2-R+	M034 S2-R+	M035 S2-R+	M036 S2-R+	M037 S2-R+	M038 S2-R+	M039 S2-R+	M048 S2-R+	OSS2 OSS	OSS6 OSS	OSS7 OSS	OSS8 OSS	S1 Head	S10 Embryo	S11 Embryo	S12 Embryo	S13 Embryo	S14 Embryo	S15 S2-GMR	S16 Kc	S17 Larvae	S18 Larvae	S19 Pupae	S2 Head	S20 Pupae	S21 Disc	S22 Head	S23 Female-body	S24 Male-body	S25 Larvae	S26 Larvae	S27 Pupae	S28 Pupae	S29 Head	S3 Male-body	S30 S2-GMR	S31 S2	S32 S2	S33 Kc	S34 Kc	S35 Kc	S4 Female-body	S5 Disc	S6 Embryo	S7 Embryo	S8 S2	S9 Embryo	SRR001337 Head	SRR001338 Head	SRR001339 Head	SRR001340 Head	SRR001341 Head	SRR001342 Head	SRR001343 Head	SRR001344 Head	SRR001345 Head	SRR001346 Head	SRR001347 Head	SRR001348 Head	SRR001349 Head	SRR001664 Head	SRR010951 Ovary	SRR010952 Ovary	SRR010953 Ovary	SRR010954 Ovary	SRR010955 Ovary	SRR010956 Ovary	SRR010957 Ovary	SRR010958 Ovary	SRR010959 Ovary	SRR010960 Ovary	SRR014268 Embryo	SRR014269 Embryo	SRR014270 Embryo	SRR014271 Embryo	SRR014272 Embryo	SRR014273 Ovary	SRR014274 Ovary	SRR014275 Ovary	SRR014276 Ovary	SRR014277 Ovary	SRR014278 Ovary	SRR014279 Ovary	SRR014280 Ovary	SRR014281 Ovary	SRR014282 Ovary	SRR023197 S2	SRR023399 S2	SRR023400 S2	SRR023402 S2	SRR023407 S2	SRR029028 S2	SRR029029 S2	SRR029030 S2	SRR029031 S2	SRR029032 S2	SRR029033 S2	SRR029608 Head	SRR029633 Head	SRR030145 gb3	SRR031692 Head	SRR031693 Head	SRR031694 Head	SRR031696 Head	SRR031697 Head	SRR031698 Head	SRR031699 Head	SRR031700 Head	SRR031701 Head	SRR031702 Head	SRR031703 Head	SRR031704 Head	SRR032092 S2	SRR032093 S2	SRR032094 S2	SRR032095 S2-NP	SRR032096 S2-NP	SRR032152 Head	SRR060643 Testis	SRR060644 Ovary	SRR060645 Testis	SRR060646 Ovary	SRR060647 Ovary	SRR060648 Ovary	SRR060649 Ovary	SRR060650 Testis	SRR060651 Ovary	SRR060652 Testis	SRR060653 Ovary	SRR065151 Ovary	SRR065152 Ovary	SRR065153 Ovary	SRR065154 Ovary	SRR065155 Ovary	SRR065800 Ovary	SRR065801 Ovary	SRR065802 Ovary	SRR065803 Ovary	SRR065804 Ovary	SRR065805 Ovary	SRR065806 Ovary	SRR065807 Ovary	SRR097865 S2-NP	SRR097866 S2-NP	SRR097867 S2-NP	SRR298536 Ovary	SRR298537 Ovary	SRR298711 Ovary	SRR298712 Ovary	SRR317110 Ovary	SRR317111 Ovary	SRR317112 Ovary	SRR317113 Ovary	SRR317114 Ovary	SRR317115 Ovary	SRR317116 Ovary	SRR317117 Ovary	SRR341115 S2	SRR341116 S2	SRR341117 S2	SRR341118 S2	SRR351332 Mixed-body	SRR351333 Mixed-body	T004 OSC	T005 CME-L1	V001 Embryo	V002 Embryo	V003 S2	V006 Female-body	V007 Head	V008 S2	V009 CME-L1	V010 ML-DmD20-C5	V011 Sg4	V012 Male-body	V013 Head	V014 DTT	V015 DreRFHV	V018 Kc167	V019 GM2	V020 S2-R+	V021 ML-DmD21	V022 ML-DmD32	V023 Head	V024 Kc167	V025 S2-R+	V026 1182-2H	V027 ML-DmD21	V028 CME-W1-Cl.8+	V029 ML-DmD9	V030 ML-DmD8	V031 GM2	V032 S1	V033 CME-W1-Cl.8+	V034 ML-DmD16-C3	V035 ML-DmD32	V036 ML-DmD20-C5	V037 S2	V038 S2	V063 Ovary	V0632 Ovary	V064 Ovary	V0642 Ovary	V065 Ovary	V0652 Ovary	V066 Ovary	V0662 Ovary	V067 S2-NP	V073 mbn2	V074 S3	V075 ML-DmBG1-C1	V076 ML-DmBG3-C2	V077 Head	V078 Head	V079 Head	V080 Head	V081 Embryo	V082 Embryo	V083 Male-body	V084 Female-body	V085 CME-W2	V086 Female-body	V088 Ovary	V0882 Ovary	V089 Ovary	V0892 Ovary	V090 Male-body	V091 fGS/OSS	V092 Male-body	V093 Male-body	V094 S2-R+	V095 S2-R+	V096 Ovary	V097 Ovary	V098 Ovary	V125 ML-DmD9	V126 CME-L1	V127 G2	V128 S3	V129 ML-DmBG1-C1	V130 ML-DmBG3-C2	V131 ML-DmD16-C3	V132 ML-DmD32	V133 Sg4	V134 ML-DmD8	V135 CME-W2	V136 Male-body	V137 Head	V138 Male-body	V139 Female-body	V140 Female-body	V141 Female-body	V142 Female-body	V144 OSC	V145 S2	V146 S1	V147 1182-2H	V148 mbn2	GSM1528798 follicle cells
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................G-C--------------ATTCT----A---AG---TA------------------------------GTCAAA-TTTTCT....................................................................................................................................	24	1	12.00	12	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	12	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCGAGGGCTACAAGGTCG........................................	19	1	6.00	6	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	5	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACAAGGTCGTAGCCAACGAGTAT--------------------TCC...	27	1	6.00	6	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGCGAGGGCTACAAGGTCGTAGCC...................................	25	1	5.00	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGGGCTACAAGGTCGTA......................................	18	1	4.00	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACAAGGTCGTAGCCAAC................................	18	1	4.00	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGGTCGTAGCCAACGAG.............................	18	1	3.00	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGTCGTAGCCAACGAGTAT--------------------T.....	21	1	3.00	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCGTAGCCAACGAGTAT--------------------TCCC..	22	1	3.00	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGGTCGTAGCCAACGAGTAT--------------------TCCC..	25	1	3.00	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
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...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAGGGCAACCCCGTCACAGGCGAGGG...................................................	27	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGAGGGCTACAAGGTCGTAG.....................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAGGCGAGGGCTACAAGGTCGT.......................................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACAAGGTCGTAGCCAACGAGT............................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTACAAGGTCGTAGCCAACGAG.............................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAAGGTCGTAGCCAACGAGT............................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAT----------------GA----TATTC------C------TTTGTTTT.................................................................................	19	2	0.50	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droEre2

TTTGG-------------------------------TTCTGGTTGT--CGCTTCCA---------------------------ATCAAA----TTCC--------------------------------------TTTTCCC------AAACTCCGA-CAGAACATA--------------------------------------------------------------------------------------------------------------GCCAATCCCTAAGTACTCTTAT-------------TAGTTGCGCCT-----------------------------------------C-----------------------------------A--AT-----------------------------------------------------------------------------------ATGAGC-----------------------TTTCGTTTTCT----------------------------------------T-----------GCCACTTAAATTTGATGTAC-TAG--------------------------------------TTTG-G--------------TCTCA----A---AA---TA------------------------------GTCAAA-TTTGCTAAT----------------GA----AATTC------C------CTTATTTTCACAGAGGGCAACCCCGTAACAGGCGAGGGCTACAAGGCCGGAGGCAACGACTAT--------------------AACCAG	Size	Hit Count	Total Norm	Total	M055 Female-body	M057 Embryo	V060 Head	V040 Embryo	V107 Male-body	V108 Head	GSM1528801 follicle cells
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTACAAGGCCGGAGGCAACGA..............................	22	1	1.00	1	1	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTACAAGGCCGGAGGCAACGA..............................	21	1	1.00	1	0	0	0	0	0	1	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGAGGGCAACCCCGTAACAGGCGAGGG...................................................	28	1	1.00	1	0	0	0	0	1	0	0
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCCGGAGGCAACGACTAT--------------------AACCG.	24	1	1.00	1	1	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGCTACAAGGCCGGAGGCAA.................................	21	1	1.00	1	0	0	0	0	0	1	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAGGCGAGGGCTACAAGGCCGGAG.....................................	26	1	1.00	1	0	0	0	0	1	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAACAGGCGAGGGCTACAAGGCCG........................................	25	1	1.00	1	0	0	0	0	1	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAGGCCGGAGGCAACGACTAT--------------------......	22	1	1.00	1	0	1	0	0	0	0	0

droYak3

TTTGC-------------------------------TGCTGCTTGT--CGCATCC---------------------------TATGAAA----TTCC--------------------------------------GTTTCCC-----CCAACTCCCAACAGATCATA--------------------------------------------------------------------------------------------------------------GCCAATTCCTAAGTACTCTTAT-------------TAGTTGCGCCT-----------------------------------------C-----------------------------------A--ATTTTTATA-CTT----------TTTATATC----------------A-------------------------------------ATGA-------------------------TTTGGATTTCT----------------------------------------T-----------GCCACTTCGATTTTATATACC-AG--------------------------------------TTTT-T--------------TTCCGAATAGTGGAA---TA------------------------------GTGCAA-TTTTCTAATCTA-------------------TATTT------C------TTTATTTCCACAGAGGGCAACCCCGTCACAGGCGAGGGCTACAAGGCCGGAGGCAACGACTTT--------------------CACCAC	Size	Hit Count	Total Norm	Total	M026 Head	M043 Female-body	M056 Embryo	V046 Embryo	V052 Head	V058 Head	V120 Male-body	SRR1275488 Male larvae	SRR1275486 Male prepupae	SRR1275484 Male prepupae	GSM1528802 follicle cells
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAGGCGAGGGCTACAAGGCCGGA......................................	24	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCACAGGCGAGGGCTACAAGGCCGGA......................................	26	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0

droEug1

TTTTG-------------------------------TTCTGCTTAC--CGTTTCCTA-----------------------------AAT----CTT-----------------------------------------TCCC-------CAAGTCA---C-AATTTAA--------------------------------------------------------------------------------------------------------------GCCAA-------------------------------------------------------------------------------------------------------------------------------ATA-AGT----------TTTTTAAG----------------TTCGA----GCTTCAT----------------------CCGA----------------------------------------------------------------------------------------G-----------------------TTTATAG-------------------------------TTTT-T--------------GATTT----G---AT---TTTCTTTAATAAT------------------TTTTCAA-TTAACTAATTT-----------------------TCTTTTT-CT-----TCCGTTTCCACAGAGGGCAACCCCGTCACAGGTGAGGGCTACAAGGCAGGAGGCAACGATTAC--------------------CACCAG	Size	Hit Count	Total Norm	Total
No Reads

droBia1

TTTGG-------------------------------TTCTGGTTGC--CGCTTCCTAAACCTAAAAACA--------------------------------------------------------------------TTCC-------CAAATCCAA-C-TAGTTAA--------------------------------------------------------------------------------------------------------------GCCAGTCCCTAGGTATTTTTATACCAAATCATATTATCC------------------------------------------CTGCTGAAAAACCCACATCCA-------------------------------------------------------TCACAAAAATAATA-----------------------------------------------------------------------TTTTA-TTTAATATTTGAGTTGGAATCTCGCTAGAAGAATATAAA--------------T---AATTATGATCTA---------------------------------ATAATAA-------GCTTA-----------------ATTT----A---TG---T-------------------------------ATCCAA-TTTACTTATAT-----------------------TCTTTT--T------CCTATTTCCACAGAGGGCAATCCCGTCACCGGCGAGGGCTACAAGGCAGGAGCCAACGACTTC--------------------CACCAG	Size	Hit Count	Total Norm	Total
No Reads

droTak1

TTTGG-------------------------------TTCTGGTTGC--CGCTTCCTAAACATAAACCTTATTAT-AAATCC-AAT---CTCACA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCC------------------------------------------TTGCTAAAAAACCCACAACCCTTCGTTATAAAGTCTTTCTTTA--CATTTTTAAGATTTTAAGTTACATTTTTAAGTCACAAACATA-------------------A---------------------------------------------------------------------------------------GACGAGGCTAAA--------------TAATA---------------------TT-ACAATCTTTCGATTTTTCTACGAATAA-------GTTTT-C--------------AATTT----A---AT---TT-------------------------------TAAAA-ATTACTCATAC--------------GA----TTTT-------T------CTTATTTCCGCAGAGGGAAACCCTGTCACAGGCGAGGGCTACAAGGCAGGAGCCAACGACTTC--------------------CACCAG	Size	Hit Count	Total Norm	Total
No Reads

droEle1

ATTTG-------------------------------TC----------CGCTTTCCAAGCCTCATT------G---------CTTGAA-----TTC-----------------------------------------ATTCC------A-AGTCTGA-AAAAGTACCGTCGAAGCCTATTTTTCACCTCAAAATGGTATACTTAAGATTATTGAATTTTAATTGGTTCATGTCGAAGATACGATTAGATTACAAAAGATTTCAAT----------------------AGGTTCCTTGACACCAATCGAT----TCC------------------------------------------ACGCCCA-TATCCAACATTTT-------------------------------------------------------ACG-------TATTTCTTTGG----G-----------------------------------------------------TTTC------------GAA------------------------------------------------CTT-------------AGGCTAAGTTTACTT------------TTTATTAATTA-------GTTTG----------------AATTT----T----A----------------------------------TATTCAA-GATACTAATTG--------------------TATTC------T-AA---TTTTCCTCCACAGAGGGAAATCCTGTCACAGGCGAGGGCTACAAGGCAGGAGGCAACGACTTC--------------------CACCAG	Size	Hit Count	Total Norm	Total
No Reads

droRho1

ACATG-------------------------------TTATGGTGGC--TACTTCCCTTT-------------GCT---TCCATTT----------------------------------TAAAAGA-----TTCCAA-----TTTTTT--------------------------------------------------------------------------CA---------------------------------------ATAAGTGCATTATTGCCTGACCCCAATCACT-------------------TCC------------------------------------------TTGCCCC-AATCCCACATTCA-------------------------------------------------------ACG-----------------------------TACTGGGAAAGATGTTA-----------AACCACTTTCTTATATATATTTT------------ATACATAAGCT------------------------AATTA-----------GCTAC-------------ATTTTA--------------------------------------T--------------------------------AC---AA------------------------------GTTCAA-GATACTAATTTA---------------------TTC------T--A---TAAATTTCCGCAGAGGGCAACCCCGTCACAGGCGAGGGCTACAAGGCAGGAGGCAACGATTTC--------------------CACCAG	Size	Hit Count	Total Norm	Total
No Reads

droFic1

TGTGA-------------------------------TTCTGCTGGT--TACCACT----------------------------ATAAAA----TTTC------------------------AC------------AGATCTT------AAATTCGATAC-CGATATA-----------------------------------------------------------------------------------------GTTTTCAAA-----------------------------------------------AAGTTCCACATAAATTCCTTTCCTAAAATGAAACCTGCTTGTTTCCTAGATAAATATCAC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------T------------------------TATTA-----------GTTATTTTTAG---------------------------------------------------TTTGTAGAATTGATTTTT--TTATT----ATGAAA---TT------------------------------CATTGA-TTTACTAATATA-----------------------TTTTAT-C------TTTATATTCACAGAGGGTAATCCCGTCACAGGCGAGGGCTACAAGGCTGGAGCCAACGACTAC--------------------CACCAG	Size	Hit Count	Total Norm	Total
No Reads

droKik1

ATG-G-------------------------------TTGTGTACA---CGCTTTCC--------------------------------------------------------------------------------TTTCCC------AAATTCC-A-CAAAGTAGC--------------------------------------------------------------------------------------------------------------GCCAATATCCCA--------------------------------------------------------------------------------------------------------------------------------------------TTTAA----------------ACTTTTTGTTTTTCGA----------------------GTTTT-AGATTG------------------------------------------------------------------ATT-----------------TAG-------A-----------------------------------------------TA-T--------------ATTTT----A---AGCCTTA----GTTAAAT-----------------------CC-TTTACAAATTTAG---ATTTATAATAATAAATCTTC------C------TTTTCATCTGCAGAGGGCAACCCCGTCACCGGCGAGGGCTACAAGGCCGGAGGCACCGATTAT--------------------CAGCAT	Size	Hit Count	Total Norm	Total
No Reads

droAna3

ATGGG-------------------------------TTCTGGAGGTGGTCCTACCCA--------------------------AT---CCTAAGTCC----------------------------------------------------TAGTCA-----GAACAC-------------------------------------------------------------------------------------------------------------------ATCTTGAATTATTCTTTT-------------TAGTTTTTTTT-----------------------------------------T-----------------------------------A--GATCTTAAAAATT----------AG--------------------------------------AAACGGGAATGAT----ATTTA----------------------------------------------------------------------------AATCGGAATCTAAATAGTC---------------------TTCACAGTTTAATGATTTTTTTAAAT-TTATTTTGTAGCCTATA------------GA--------------------ACCTC------TATCTTCAGTTTAAA---TCTTCAAGTATTCTAATCCT-----------------------------TT-TATTTTAATCTTTCGCAGAGGGTAACCCCGTCACAGGAGAGGGCTACAAGCCAGGCGCAAATGACTTC--------------------CACCAG	Size	Hit Count	Total Norm	Total	M044 Female-body	M058 Embryo	V039 Embryo	V055 Head	V105 Male-body	V106 Head
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAACCCCGTCACAGGAGAGGG...................................................	22	1	1.00	1	0	0	0	0	1	0
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCCCGTCACAGGAGAGGGCTACAAG............................................	25	1	1.00	1	1	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAGGGCTACAAGCCAGGCGCA...................................	22	1	1.00	1	1	0	0	0	0	0

droBip1

ATGGC-------------------------------TGCTGGAGGTGGTCCTACC-A--------------------------AT---CCCAAGTCCTTGTCCGTCCCCAAGTCACCTCCTAAAGAGAAATTCCAAG-----ATTTCC------------------TGTCAAAGTT---------------------------------------------------------------------------------------------------------------------TC-TTT-------------TAATTTTCTTC-----------------------------------------C-----------------------------------AAAAATCTTAA-AATT----------TG--------------------------------------AAACGCGAATGAC----ATTTA----------------------------------------------------------------------------AATCGGAACCCAAGTAGTG---------------------ATCACAGTATC-TATTCTTTTTATAT-TTATTTTAAAGTTTGTA------------GA--------------------ACCTC------TAGTTTAAGGTCATATCATCTTCAAGTCTTCTAATCCC-----------------------------TG-AA---TCATCTTCCACAGAGGGAAACCCCGTCACAGGTGAGGGCTACAAGCCAGGCGCAAACGACTTC--------------------CACCAG	Size	Hit Count	Total Norm	Total
No Reads

dp5

CCTAC-------------------------------ACCT----------------------ACACCGACA-----------CCTGCAC----TTTT---GCTCCACCTGAGCGATCTCTGGAGGA-----TCGGAG-----CTCTCT--------------------------------------------------------------------------TGGGAGG---------------------------------------A--------------------GTATCCTCCA-------------AAGAT-CGCTT-----------------------------------------T-----------------------------------A--GCTTCCACA-AGT----------AGATTGAG----------------AATGC----G-----------------------CTTAG----------------------------------------------------------------------------AATTA-----------GCT-------------AGGCTTAG--------------------------------------CCTA-C--------------ACTTC----A---AT---CTGCCATTTTAGT-----------------------GC-CTTACTAATCCCC---ATTTA---------------TTTTG-TT-----CTCTACTCAACAGAGGGAAATCCCGTGACCGGCGAGGGATACAGGGCCGGAGGAACGGACTACATTAAGGCCGCCGGCTCGACCAATAG	Size	Hit Count	Total Norm	Total	M022 Male-body	M040 Female-body	M059 Embryo	M062 Head	V043 Embryo	V051 Head	V112 Male-body	SRR902010 Ovary	SRR902011 Testis	SRR902012 CNS imaginal disc
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACAGGGCCGGAGGAAC.................................	17	2	1.50	3	0	0	0	0	0	0	0	0	0	3
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATACAGGGCCGGAGGAAC.................................	19	2	0.50	1	0	1	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCGTGACCGGCGAGGGATA................................................	19	2	0.50	1	0	0	0	1	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGATACAGGGCCGGAGGAACGGA..............................	24	2	0.50	1	0	0	0	0	0	0	1	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACAGGGCCGGAGGAACGGACTACAA........................	26	2	0.50	1	0	0	0	0	0	0	0	1	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTACATTAAGGCCGCCGGCTCGACC.....	25	2	0.50	1	0	1	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAATCCCGTGACCGGCGAGGG...................................................	22	2	0.50	1	0	1	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATACAGGGCCGGAGGAACGGACTACA.........................	26	2	0.50	1	0	0	0	0	0	0	1	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGCCGCCGGCTCGACCAATA.	21	2	0.50	1	0	1	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGGGATACAGGGCCGGAGGAACGGAC.............................	27	2	0.50	1	0	1	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATACAGGGCCGGAGGAACGGACTACAT........................	28	2	0.50	1	0	0	0	0	0	0	1	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATACAGGGCCGGAGGAACGGA..............................	22	2	0.50	1	0	0	0	0	0	0	1	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACATTAAGGCCGCCGGCTCGACCAA...	26	2	0.50	1	0	1	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACTACATTAAGGCCGCCGGCTC.........	23	2	0.50	1	0	1	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCCCGTGACCGGCGAGGG...................................................	19	2	0.50	1	0	1	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGAAATCCCGTGACCGGCGAGGG...................................................	24	2	0.50	1	0	1	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATCCCGTGACCGGCGAGG....................................................	19	2	0.50	1	0	1	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATACAGGGCCGGAGGAACGGACC............................	23	2	0.50	1	0	0	1	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGGGCCGGAGGAACGGACT............................	20	2	0.50	1	0	0	0	0	0	0	1	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGGGAAATCCCGTGACCGGCGAGG....................................................	25	2	0.50	1	0	1	0	0	0	0	0	0	0	0

droPer2

CCTAC-------------------------------ACCT----------------------ACACCGACA-----------CCTGCAC----TTTT---GCTCCACCTGAGCGATCTCTGGAGGA-----TCGTAG-----ATCTCT--------------------------------------------------------------------------TGGGAGG---------------------------------------A--------------------GTATCCTCCA-------------AAGAT-CGCCT-----------------------------------------T-----------------------------------A--GCTTCCACA-AGT----------AGATTGAG----------------AATGC----G-----------------------CTTAG----------------------------------------------------------------------------AATTA-----------GCT-------------AGGCTTAG--------------------------------------CCTA-C--------------ACTGC----A---AT---CTGCCATTTTAGT-----------------------GC-CTTACTAATCCCC---ATTTA---------------TTTTG-TT-----CTCTACTCAACAGAGGGAAATCCCGTGACCGGCGAGGGATACAGGGCCGGAGGAACGGACTACATTAAGGCCGCCGGCTCGACCAATAG	Size	Hit Count	Total Norm	Total	M021 Embryo	M042 Female-body	V042 Embryo	V050 Head	V057 Head	V111 Male-body
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAATCCCGTGACCGGCGAGGG...................................................	22	1	1.00	1	0	0	0	0	0	1
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGATACAGGGCCGGAGGAACGGACTAC..........................	27	1	1.00	1	0	0	0	0	0	1
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGCCGGAGGAACGGACT............................	18	1	1.00	1	0	1	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAACGGACTACATTAAGGCCG................	22	1	1.00	1	0	0	0	0	0	1

droWil2

CTG-C-------------------------------T-------GT------------------------------------------------------------------------------------------------------------------------A--------------------------------------------------------------------------------------------------------------GTCCAT----------------------------------------------------------------------------------------------------------------------------CCATT-AGT----------CAACTTAG----------------CACGCTTGCTTTTCAC----------------------TTGCC-TAATAG------------------------------------------------------------------TTT-----------ACT-------------ATATATAT--------------------------------------CTTA-C--------------TCTTG----A---TA---ATGCCTC------TTTTCC-----------------AA-TTTCCAATT----GTTAATTA---------------ATCTTTC-ATTTTCCACTTTTCACAGAGGGAAATCCCGTTACTGGCGAGGGCTATAAGTCAGGTGGCTCAGACT--------------------------CG	Size	Hit Count	Total Norm	Total	M020 Head	M045 Female-body	V117 Male-body	V118 Embryo	V119 Head
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCAGGTGGCTCAGACT--------------------------CG	19	1	2.00	2	2	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGGGCTATAAGTCAGGTGGCTC.................................	23	1	1.00	1	0	1	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCTATAAGTCAGGTGGCT..................................	19	1	1.00	1	0	1	0	0	0
.......................................................................................................................................................................................................................................................................................CCAT----------------------------------------------------------------------------------------------------------------------------CCATT-AGT----------CAACTTAG----------------CACGC..................................................................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	1	0	0	0	0

droVir3

CAC-TTTGTGAAAACATATTGTTTAGTATTGATGTAT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCTGAA-TGCACTAAT----GTCATTTA---------------ATTCA-TC-----ATTTTCATTACAGAAGGCAATCCCGTTACTGGTGAGGGCTACAAACCTGGTGCAACTGACTAT--------------------ATACAG	Size	Hit Count	Total Norm	Total	M027 Male-body	M028 Head	M047 Female-body	M061 Embryo	SRR060654 Ovary	SRR060655 Testis	SRR060656 Ovary	SRR060657 Testis	SRR060658 Ovary	SRR060659 Testis	SRR060660 Ovary	SRR060661 Embryo	SRR060662 Embryo	SRR060663 Embryo	SRR060664 Male-body	SRR060665 Female-body	SRR060666 Male-body	SRR060667 Female-body	SRR060668 Male-body	SRR060669 Female-body	SRR060670 Testis	SRR060671 Male-body	SRR060672 Female-body	SRR060673 Ovary	SRR060674 Ovary	SRR060675 Ovary	SRR060676 Ovary	SRR060677 Ovary	SRR060678 Testis	SRR060679 Testis	SRR060680 Testis	SRR060681 Testis	SRR060682 Embryo	SRR060683 Testis	SRR060684 Embryo	SRR060685 Embryo	SRR060686 Embryo	SRR060687 Embryo	SRR060688 Ovary	SRR060689 Testis	SRR1106712 embryo_0-2h	SRR1106713 embryo_0-2h	SRR1106714 embryo_2-4h	SRR1106715 embryo_4-6h	SRR1106716 embryo_4-6h	SRR1106717 embryo_6-8h	SRR1106718 embryo_6-8h	SRR1106719 embryo_8-10h	SRR1106720 embryo_8-10h	SRR1106721 embryo_10-12h	SRR1106722 embryo_10-12h	SRR1106723 embryo_12-14h	SRR1106724 embryo_12-14h	SRR1106725 embryo_14-16h	SRR1106726 embryo_14-16h	SRR1106727 larvae	SRR1106728 larvae	SRR1106729 mixed whole adult body	SRR1106730 embryo_16-30h	V047 Embryo	V053 Head	V116 Male-body	GSM1528803 follicle cells
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTACAAACCTGGTGCAACT................................	20	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGTTACTGGTGAGGGCTACAAAC...........................................	23	1	1.00	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAGGGCTACAAACC..........................................	15	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGGGCTACAAACCTGGTGC....................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTGGTGAGGGCTACAAAC...........................................	19	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTACTGGTGAGGGCTACAAACCT.........................................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGGTGAGGGCTACAAACCTGGTGCAAC.................................	28	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droMoj3

TT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTTTCCTAGAAGGAAATCCCGTTACCGGCGAGGGGTACAAAGCTGGCGGAACCGATTAT--------------------ATCCAG	Size	Hit Count	Total Norm	Total	M046 Female-body	V041 Embryo	V049 Head	V056 Head	M060 Embryo	V110 Male-body
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCCGTTACCGGCGAGGGGTACAAAGCT.........................................	27	1	1.00	1	0	0	0	0	0	1
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCCCGTTACCGGCGAGGG...................................................	19	1	1.00	1	1	0	0	0	0	0

droGri2

---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATAGATGGCAATCCCGTGACTGGTGAGGGCTACAAGGCTGGTGGAAACGATTAT--------------------ATACAA	Size	Hit Count	Total Norm	Total	M041 Female-body	V109 Male-body
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAATCCCGTGACTGGTGAGGGCT.................................................	24	1	1.00	1	1	0
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTACAAGGCTGGTGGAAACG...............................	20	1	1.00	1	1	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAGGCTGGTGGAAACGATT............................	20	1	1.00	1	0	1
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAGGCTGGTGGAAACGATTAT--------------------AT....	24	1	1.00	1	0	1
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCTACAAGGCTGGTGGAAACGATT............................	25	1	1.00	1	1	0
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATCCCGTGACTGGTGAGGGCTA................................................	23	1	1.00	1	1	0
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAATCCCGTGACTGGTGAGGGCTA................................................	25	1	1.00	1	1	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACTGGTGAGGGCTACAAGGC..........................................	21	1	1.00	1	1	0
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTGGTGAGGGCTACAAGGC..........................................	20	1	1.00	1	1	0
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGCTGGTGGAAACGATTAT--------------------ATA...	23	1	1.00	1	1	0
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGCTGGTGGAAACGATTAT--------------------ATACA.	25	1	1.00	1	1	0

dsi_13288

3r:13683600-13683749 +

Candidate

Unknown

Predicted structure

Flybase annnotation

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads