ID:

dsi_13257

 Coordinate:

3l:14387436-14387555 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

Flybase annnotation

intergenic

Repeatable elements

NameClassFamilyStrand
AT_richLow_complexityLow_complexity+
AT_richLow_complexityLow_complexity+

Sense Strand Reads

TCCAAAATGCCGCCTATGTCGTCACCTTCGACGGACTCAACAGGAAAGTGGTAAGTAAATTTTTTTATAATTTAAAAAAGTATAACTACTGATAAAGTAAATAGTTCAATGTTGAAGTATTGTAAAAATTAGTTAAAATTATTTAAAATAATATCTTTTTTGCTCCGCAGATTTATAGTGCAATATCGGAGACTGGTTGGGTTGATCTCTATACCGCTCC
**************************************************..............((......((((((((.......((((((......((((.((((....)))).))))......)))))).....................))))))))......))************************************************** 		Read size # Mismatch Hit Count Total Norm Total M024
male body		 M053
female body
 SRR902009
testis
 M025
embryo
 SRR553487
NRT_0-2 hours eggs
 GSM343915
embryo
 SRR553485
Chicharo_3 day-old ovaries
 SRR553488
RT_0-2 hours eggs
 SRR553486
Makindu_3 day-old ovaries
 SRR618934
dsim w501 ovaries
......................CACCTTCGACGGACTCAACAGGAAAGT........................................................................................................................................................................... 27 0 1 3.00 3 2 1 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................GACTGGTTGGGTTGATCTCTATA....... 23 0 1 2.00 2 0 1 0 0 0 1 0 0 0 0
..................................................................................................................................................................................TGCAATATCGGAGACTGGTTGGGGTG................ 26 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0
............TGTATGTCGTCACCTTCGTCG........................................................................................................................................................................................... 21 3 1 1.00 1 0 0 0 0 1 0 0 0 0 0
......................CACCTTCGACGGACTCAACAGG................................................................................................................................................................................ 22 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
...............................CGGACTCAACAGGAAAGG........................................................................................................................................................................... 18 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................GATTTATAGTGCAATATCGGA.............................. 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0
.........CCGCCTATGTCGTCACCTTCGACGGAC........................................................................................................................................................................................ 27 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0
.....................TCACCTTCGACGGACTCAACAGGAAAGT........................................................................................................................................................................... 28 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
...AAAATGCCGCCTATGTCGTCACCTTC............................................................................................................................................................................................... 26 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0
......................................................................................................................................................................AGTGATTTATAGTGCAATATCGGAGACTG......................... 29 3 1 1.00 1 0 0 1 0 0 0 0 0 0 0
.................GTCGTCACCTTCGACGGACT....................................................................................................................................................................................... 20 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0
.......................ACCTTCGACGGACTCAACAG................................................................................................................................................................................. 20 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0
..................................................................................................................................................................................TGCAATATCGGAGACTGGTTGGGTTG................ 26 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0
...........................TCGACGGACTCAACAGGAAAGT........................................................................................................................................................................... 22 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................GTTGGGTTGATCTCTATACC..... 20 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
.......................................................................................................GTTCAATGTTGCAGTA..................................................................................................... 16 1 2 0.50 1 0 0 0 0 0 0 1 0 0 0
............................................................................................................................................................TTCTTGCATCGCAGATTTATA........................................... 21 3 4 0.25 1 0 0 0 0 0 0 0 1 0 0
.........................................................................................................................GAAAAAATTAGTTAAAA.................................................................................. 17 1 15 0.13 2 0 0 0 0 0 0 2 0 0 0
................................................................................................................................................................................AGTGCAGTAGGGGAGACTG......................... 19 3 15 0.07 1 0 0 0 1 0 0 0 0 0 0
.............CTGTCTCGTCAGCTTCGAC............................................................................................................................................................................................ 19 3 18 0.06 1 0 0 0 0 0 0 0 0 1 0
.............................................................................................................................................................TTTTGATCCGCAGAT................................................ 15 1 18 0.06 1 0 0 0 0 0 0 1 0 0 0
...............................................................TTTAGAATTTAAAAAA............................................................................................................................................. 16 1 20 0.05 1 0 0 0 0 0 0 1 0 0 0
...............................CGGACTCAAGAGGGAA............................................................................................................................................................................. 16 2 20 0.05 1 0 0 0 0 0 0 0 1 0 0
.................................................GGTGAGTAAATTTTT............................................................................................................................................................ 15 1 20 0.05 1 0 0 0 0 0 0 0 0 0 1

Anti-sense strand reads

AGGTTTTACGGCGGATACAGCAGTGGAAGCTGCCTGAGTTGTCCTTTCACCATTCATTTAAAAAAATATTAAATTTTTTCATATTGATGACTATTTCATTTATCAAGTTACAACTTCATAACATTTTTAATCAATTTTAATAAATTTTATTATAGAAAAAACGAGGCGTCTAAATATCACGTTATAGCCTCTGACCAACCCAACTAGAGATATGGCGAGG
**************************************************..............((......((((((((.......((((((......((((.((((....)))).))))......)))))).....................))))))))......))************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553486
Makindu_3 day-old ovaries
 SRR902009
testis
 SRR618934
dsim w501 ovaries
 M023
head
 O001
Testis
...........CGGACAGAGCAGTCGAAGCTG............................................................................................................................................................................................ 21 3 2 0.50 1 1 0 0 0 0
............................................................AAAAAATATTTAATTTTTTCGAAT........................................................................................................................................ 24 3 7 0.14 1 0 1 0 0 0
...................................................................................TCGTTGACTACTTCATTTA...................................................................................................................... 19 3 20 0.10 2 0 0 0 2 0
.....................ACTGGAAGCTACCTGAG...................................................................................................................................................................................... 17 2 19 0.05 1 0 0 1 0 0
............................................TTTCACCATTGATTCAAA.............................................................................................................................................................. 18 2 20 0.05 1 0 0 0 0 1
..........................ATCCTGGCTGAGTTGTCC................................................................................................................................................................................ 18 3 20 0.05 1 0 0 1 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim2 3l:14387386-14387605 + dsi_13257 TC-CAAAA-TGCCGC-CTATGTCGTCACCTTCGACGGACTCAACAGGAAAGTGGTAAGTAAATTTTT-------------------TTATAATTTAAAAAAGTATAACTACTGA-------------------------------------------TAAAGTAAATAGTT------------------------------------------------------------------------------------------CAATGTTGAAGTATTGTAAAAATTAGTTAAAATTAT-----------------TTAAAAT------------------------------------------------------------------------------------AATATCTTTTTTG-C--TCCGCAGATTTATAGTGCAATATCGGAGACTGGTTGGGTTGATCTCTATACCGCTCC
droSec2 scaffold_0:6859369-6859601 + TC-CAAAA-TGCCGC-CTATGTCGTCACCTTCGACGGACTCAACAGGAAAGTGGTAAGTAAATTTTG-------------------TTATAACATAAAAAAGTATAATTACTGA-------------------------------------------TAAAGTAAATAGTT------------------------------------------------------------------------------------------CAATGTTGAAGTATTGTAAAAATTAGTTAAAATTATTATTATTAATT----AGTTAAAAT------------------------------------------------------------------------------------TATATCTTTTTTG-C--ACCGCAGATTTATAGTGCCGAATCGAAGACCGGTTGGGTTGATCTCTATACCGCTCC
dm3 chr3L:14738358-14738577 + TT-CAAAA-TGCCGC-CTATGTCGTCACCTTCGACGGACTCAACAGGAAAGTGGTAAGTAAAGTATT-------------------ATATAATATAAAAAAGTATAATTACTGA-------------------------------------------TAAAGTAAATAGTA------------------------------------------------------------------------------------------CAATGTTGAAGTATTGTAAATAATAGTCTAAATTAA-----------------TTAAAAT------------------------------------------------------------------------------------AATATCTTTTTTG-C--TCCGCAGATTTATAGTGCCGAATCGAAGACCGGTTGGGTTGATCTCTATACCGCTCC
droEre2 scaffold_4784:14704730-14705071 + TC-CAAAA-TGCCGC-CTACGTCGTCACCTTTGACGGACTCAACAGGAAAGTGGTAAGCACATTATT-------------------TTGTAATACAAACATGC--------CGATCAACAATTTATATTTTAATAATTGGTAATGAAATGTGT---------------------------GTAGCT---------------TTC---------TTTAAATACTGTTATTTTTATTTAAATCAAACACGAATAATTAACCTTCAATGGCGAACTATAGTAAACCATAAT---------------TAACA----AGATAGAAT--------------------------GCTATAGTCAAGTAACGGGTATAAAAATGTATAACTTTTTCCATAATAACTAAAGA--A------TCATCG-T--GTTGCAGATTTATAGTGCCGAGTCGAAGACCGGTTGGGTGGATCTCTATACCGCTCC
droYak3 3L:14825557-14825725 + TC-CAAAA-TGCCGC-CTATGTCGTCACCTTCGACGGGCTTAACAGGAAAGTGGTAAGTAACTTAT-----TTAAG-------------------------------------------------------------------------------------------------------------CCATAATTTTAAAGAATTAAAATG--------------------------------------------------------------------------------------------ATAACT----------------T--ATT-----------------------------------------------------------------------GGCAT-----AA----TG-T--TCTTTAGATTTATAGTCCAGAATCGAGCACCGGTTGGGTGGATCTCTATACCGCTCC
droEug1 scf7180000409456:987367-987453 + TC-CAAAA-TGCTGC-CTCTGTCGTTACCTTCGATGGACTCAACAGGAAAGTTGTAAGTTATTTAAA-------------------TTTTAACTTAATAACTTTTAACT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droBia1 scf7180000302428:5145428-5145613 - TC-CAGAA-CGCCGC-CTATGTCGTTACCTTCGACGGACTCAACAGAAAAGTGGTAAGTTATTTGGG--------------------------------------------------------------------------TTTCTATG-GA------------------------------------------------AAATAAATA--------------------------------------------------------------------------------------------CTAACT----------------A--CACAGAATATTGTTCCCTATA------------------------------------------------ATTTTATA------ACATTATTC-A--TCTATAGATCTACAGCGCCGAGTCGAAGACCGGCTGGGTGGACCTCTATACCGCTCC
droTak1 scf7180000415135:448414-448548 + TC-CAGAA-CGCCGC-CTCTGTCGTTACCTTCGACGGACTCAACAGGAAAGTGGTAAGTTATTTAG------TGAAGTATTACAT-----A----------------------------------------------------------------------------------------------G------------------------------------------------------------------------------------------------------------------------------------GAT--T--CTT--------------------------------------------------------------------------------TTGATGTTG-T--CTAATAATATAATTACACAGAA---AAAATGTTTTGAGTTGAA--------------
droEle1 scf7180000491199:1907478-1907648 + TT-CAGAA-TGCCGC-GTCCGTTGTGACTTTCGATGGGCTCAGCAGAAGTGTGGTAAGTAACAATA----------------------------TAAACTAATTTGATAAGC-----------------------------AATACAGT-TAT---------------------------GTAAGT---------------TAC---------AATAATAATAATAA------------------------------------------------------------------------TAATTATTC----AATTCCACA--A--GCT--------------------------------------------------------------------------------TTTATATTA-A--ACTATAAATTAGCAA---------------------------------TACAATATC
droRho1 scf7180000777233:69022-69125 - TT-TTAAT-AAT----------------------------------------------TAA----A----------------------------------------------------------------------------------------------------------------------------------------------------TCTAAAATAAATA----------------------------------------------------------------------------------------TTTTTA--T--ACT--------------------------------------------------------------------------------TCTATATTC-T--CTTGCAGATCTACAGCGCGGAATCGAAGACCGGCTGGGTTGATCTCTATACCGCTCC
droFic1 scf7180000453807:192685-192845 + TC-CAGAA-TGCCGC-ATATGTCGTTACCTTCGACGGTCTTAACAGGAAGGTGGTAAGTCACTTTTAACCATTACAAAATTGGATTTTATAAGATAAACAAA-----------A-------------------------------------------CCGAATTACTAGCT------------------------------------------------------------------------------------------TAACATCAGAACAAATTAAAAATCC-----ATTTAT-----------------TTAAATT------------------------------------------------------------------------------------A-----------------------------------------------------------------ACGTTCTT
droKik1 scf7180000302383:885363-885537 + TT-CAGAA-TGCCGC-CTATGTGGTAACCTTTGATGGACTCAACAGGCGGGTGGTAAGTGATTCTA-----CTGAAA----------------------------------------------------------------TATACATA-TAT---------------------------GAAGAT---------------TGCAGCTG--------------------------------------------------------------------------------------------GTTATATCCTTGA--------------T--------------------------------------------------------------------------------TCCTCTCTG-C--CTATCAGATCTACAGCACCGAATCAAAGACGGGTTGGGTGGACCTCTATACCGCTCC
droAna3 scaffold_13337:4363487-4363647 - TT-CAGAA-TGCCGC-CTATGTGGAGACCTTCAACGGACTCACCCGCAAGACTGTAAGTAAATAAA-----CCAAA-------------------------------------------------------------------------------------------------------------GAAACCTCTC--------------------------------------------------------------------------------------------------------------------AGA------CATCCT-CT--------------------------------------------------------------------A--GAAAT-----ATCCTTCC-C--TACGTAGATCTACAGAACGGTATCAGAAACAGGATGGGTGGATCTTTACACCGCCCC
droBip1 scf7180000395450:492512-492671 - TT-CAGAA-TGCCGC-CTATGTGGTAACCTTCAACGGACTTACCCGAAAGACTGTAAGTAACTAAT-----CCAAA-------------------------------------------------------------------------------------------------------------GAAATATTTT--------------------------------------------------------------------------------------------------------------------TAA------CATTTT-CT-----------------------------------------------------------------------AGCAT-----ATCCTTTC-C--TACGCAGATCTATAGCACGGAATCAAAAACAGGATGGGTGGATCTTTACACCGCCCC
dp5 XR_group6:1011464-1011621 - TT-CAGAA-TGCCGC-CTATGTGGTAACCTTCGATGGACTTAATCGGAAAGTGGTAAGTGCCTCCC--------AG-------------------------------------------------------------------------------------------------------------GGCCGGTTCT--------------------------------------------------------------------------------------------------------------------GGT------CCCC--------------------C-A------------------------------------------------ACTGTAGCAT-----AT--TGTC-C--CTCGTAGATCTACAGCACGGAATCAAAAACTGGCTGGGTAGATCTTTACACGGCTCC
droPer2 scaffold_12:1690254-1690417 - TTTCAGAACTGCCGCCCTATGTCGTACCCTCAGATGAACTTAATCGGAAAGTAGTAAATTGCCTCC------CAGA--GCCG-----------------------------------------------------------------------------------------------------------GGTTCT--------------------------------------------------------------------------------------------------------------------GCT------CCCC--------------------CAA------------------------------------------------ACTGTAGCAT-----AT--CGTC-C--CTCGTAGATCTACTGCACGGAATCAAATACTGGCTGAGTAGATCTTTACACGGCTGC
droWil2 scf2_1100000004949:1131859-1132068 - TA-CAAAA-TGCGGC-ATACATTGTAACATTTGATGGACTTACTCGAAAGGAGGTAAGTTTTCAGA---------AG----------------------------------------------------------------TTTGCATA-GATGAAATCAAAGTCGTGATAGAACGTTCTGTTAAT---------------TTT---------ATCAAAAACCCTTC----------------------------------------------------------------------------------------GTT--TTAT--TTA----------------------------------------------------------------------TATA------AATTCCCTGCATTTACGCAGATCTACAGCACCGAGTCAAAAACCGGTTGGGTGGATCTATACACTGCCCC
droVir3 scaffold_13049:16833265-16833442 + TT-CAGAA-TGCAGC-CTATGTTGTCAGCTTCGATGGACTAAGCCGGAAGCTGGTAAGTGAACG----------AAGAACTGCACTTTGGG--------------------------------------------------TT---------------------------------------------------C---------AACCATCCACTCTC---TCTCTC----------------------------------------------------------------------------------------TCTCTC--T--CTC--------------------------------------------------------------------------------TCGCTCTCC-A--CCTGCAGCTGTATAGCACTGAATCGAAAACAGGCTGGGTTGATCTTTATACGGCGCC
droMoj3 scaffold_6680:19858357-19858454 - TA-TGAAT-TATG-------------------------------------------------------------AAAAACA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AC-----------------TTCGCCT--G--ATT--------------------------------------------------------------------------------TCCACTTTG-T--GCTGCAGCTTTACAGCATAGAATCTAAGACCGGCTGGGTTGACCTTTATACGGCCCC
droGri2 scaffold_15110:16274207-16274311 - TA-TGAAT-CAG----------------------------------------------TCA----A------TTAAAAGCTGCAT-----------------------------------------------------------------------------------------------------------TT----------------------------------------------------------------------------------------------------------------------AA----TAC--C--TCC--------------------------------------------------------------------------------TTGAACTTC-A--TTCACAGCTCTACAGCACAGAATCGAAGACTGGTTGGGTTGATCTGTATACGGCACC

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
TC-CAAAA-TGCCGC-CTATGTCGTCACCTTCGACGGACTCAACAGGAAAGTGGTAAGTAAATTTTT-------------------TTATAATTTAAAAAAGTATAACTACTGA-------------------------------------------TAAAGTAAATAGTT------------------------------------------------------------------------------------------CAATGTTGAAGTATTGTAAAAATTAGTTAAAATTAT-----------------TTAAAAT------------------------------------------------------------------------------------AATATCTTTTTTG-C--TCCGCAGATTTATAGTGCAATATCGGAGACTGGTTGGGTTGATCTCTATACCGCTCCSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
.........................CACCTTCGACGGACTCAACAGGAAAGT...........................................................................................................................................................................................................................................................................................................................................................................................................................................2713.00302010000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACTGGTTGGGTTGATCTCTATA.......2312.00200010000000100000
.........................CACCTTCGACGGACTCAACAGG................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.00101000000000000000
..................................CGGACTCAACAGGAAAGG...........................................................................................................................................................................................................................................................................................................................................................................................................................................1811.00101000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................GATTTATAGTGCAATATCGGA..............................2111.00100010000000000000
...........CCGC-CTATGTCGTCACCTTCGACGGAC........................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.00100100000000000000
........................TCACCTTCGACGGACTCAACAGGAAAGT...........................................................................................................................................................................................................................................................................................................................................................................................................................................2811.00101000000000000000
....AAAA-TGCCGC-CTATGTCGTCACCTTC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.00100010000000000000
....................GTCGTCACCTTCGACGGACT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00100100000000000000
..........................ACCTTCGACGGACTCAACAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00100010000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCAATATCGGAGACTGGTTGGGTTG................2611.00100000000000001000
..............................TCGACGGACTCAACAGGAAAGT...........................................................................................................................................................................................................................................................................................................................................................................................................................................2211.00101000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGGGTTGATCTCTATACC.....2011.00101000000000000000
droSec2
TC-CAAAA-TGCCGC-CTATGTCGTCACCTTCGACGGACTCAACAGGAAAGTGGTAAGTAAATTTTG-------------------TTATAACATAAAAAAGTATAATTACTGA-------------------------------------------TAAAGTAAATAGTT------------------------------------------------------------------------------------------CAATGTTGAAGTATTGTAAAAATTAGTTAAAATTATTATTATTAATT----AGTTAAAAT------------------------------------------------------------------------------------TATATCTTTTTTG-C--ACCGCAGATTTATAGTGCCGAATCGAAGACCGGTTGGGTTGATCTCTATACCGCTCCSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCCGAATCGAAGACCGG........................1812.0020020
............................................................................................................................................................................................................................................................................................................................................................................................................................................GATTTATAGTGCCGAATCGAAGACC..........................2512.0020020
.........................CACCTTCGACGGACTCAACA..................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010010
...............................CGACGGACTCAACAGGAAAGT...........................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010010
..............................TCGACGGACTCAACAGGAAAGTG..........................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010001
......................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCGAATCGAAGACCGGTTGG....................2111.0010010
....................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGCCGAATCGAAGACCGGTTGGGTT.................2611.0010100
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCGAAGACCGGTTGGGTT.................1911.0010010
dm3
TT-CAAAA-TGCCGC-CTATGTCGTCACCTTCGACGGACTCAACAGGAAAGTGGTAAGTAAAGTATT-------------------ATATAATATAAAAAAGTATAATTACTGA-------------------------------------------TAAAGTAAATAGTA------------------------------------------------------------------------------------------CAATGTTGAAGTATTGTAAATAATAGTCTAAATTAA-----------------TTAAAAT------------------------------------------------------------------------------------AATATCTTTTTTG-C--TCCGCAGATTTATAGTGCCGAATCGAAGACCGGTTGGGTTGATCTCTATACCGCTCCSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
.T-CAAAA-TGCCGC-CTATGTCGTCACCTTC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............CGC-CTATGTCGTCACCTT................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.T-CAAAA-TGCCGC-CTATGTCGTC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................CGAATCGAAGACCGGTTGGGTTG................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGAAGACCGGTTGGGTTGATCTCTA.........2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................CGAAGACCGGTTGGGTTG................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAGTGCCGAATCGAAGACCGGTTGG....................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000
...............................CGACGGACTCAACAGGAAAGA...........................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCGAAGACCGGTTGGGT..................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGCCGAATCGAAGACCGGTTGG....................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGCCGAATCGAAGACCGGT.......................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................TTATAGTGCCGAATCGAAGACCGG........................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTGCCGAATCGAAGACCGG........................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATCGAAGACCGGTTGGGTTGATCTCTA.........2911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................CTTCGACGGACTCAACAGG................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................CGAATCGAAGACCGGTTG.....................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................TATAGTGCCGAATCGAAGACCG.........................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................AATCGAAGACCGGTTGGGT..................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCGAAGACCGGTTGGGTTGATCT............2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................CTTCGACGGACTCAACAGGAAAGTGA.........................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTATAGTGCCGAATCGAAGACC..........................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCGGTTGGGTTGATCTCTA.........1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGCCGAATCGAAGACCGGTTG.....................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTATAGTGCCGAATCGA...............................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................CGGACTCAACAGGAAAGTG..........................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................AATCGAAGACCGGTTGGG...................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTTGGGTTGATCTCTAT........1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................GTCACCTTCGACGGACTC......................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................ACCTTCGACGGACTCAACA..................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAGTGCCGAATCGAAGACCGGTTG.....................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCGAAGACCGGTTGGGTTGAT..............2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAGTGCCGAATCGAAGACCGG........................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCGAATCGAAGACCGGTTG.....................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTGCCGAATCGAAGACCGGTT......................2211.0010000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGCCGAATCGAAGACCGGTTGGG...................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000
droEre2
TC-CAAAA-TGCCGC-CTACGTCGTCACCTTTGACGGACTCAACAGGAAAGTGGTAAGCACATTATT-------------------TTGTAATACAAACATGC--------CGATCAACAATTTATATTTTAATAATTGGTAATGAAATGTGT---------------------------GTAGCT---------------TTC---------TTTAAATACTGTTATTTTTATTTAAATCAAACACGAATAATTAACCTTCAATGGCGAACTATAGTAAACCATAAT---------------TAACA----AGATAGAAT--------------------------GCTATAGTCAAGTAACGGGTATAAAAATGTATAACTTTTTCCATAATAACTAAAGA--A------TCATCG-T--GTTGCAGATTTATAGTGCCGAGTCGAAGACCGGTTGGGTGGATCTCTATACCGCTCCSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
.................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAGTGCCGAGTCGAAGACC..........................2012.0021000100
.............................TTTGACGGACTCAACAGGAAAGT...........................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0011000000
....AAAA-TGCCGC-CTACGTCGT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000010
............................................................................................................................................................................................................................................................................................................................................................................................................................................GATTTATAGTGCCGAGTCGAAGACC..........................2511.0010001000
.......................GTCACCTTTGACGGACTCAACAGG................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000010
..................................CGGACTCAACAGGAAAGT...........................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010100000
droYak3
TC-CAAAA-TGCCGC-CTATGTCGTCACCTTCGACGGGCTTAACAGGAAAGTGGTAAGTAACTTAT-----TTAAG-------------------------------------------------------------------------------------------------------------CCATAATTTTAAAGAATTAAAATG--------------------------------------------------------------------------------------------ATAACT----------------T--ATT-----------------------------------------------------------------------GGCAT-----AA----TG-T--TCTTTAGATTTATAGTCCAGAATCGAGCACCGGTTGGGTGGATCTCTATACCGCTCCSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
.........................CACCTTCGACGGGCTTAACAGGAAAGT...........................................................................................................................................................................................................................................................................................................................................................................................................................................2713.00300000030000
.........................CACCTTCGACGGGCTTAACAGG................................................................................................................................................................................................................................................................................................................................................................................................................................................2212.00201000010000
.....................TCGTCACCTTCGACGGGCT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................1912.00220000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATCGAGCACCGGTTGGGTG.................2112.00200000020000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTCCAGAATCGAGCACCGGTTGGGT..................2612.00200000020000
................................................................................................................................................................................................................................................................................................................................................................................................................................................TATAGTCCAGAATCGAGCACCGGTTGGGT..................2911.00100000010000
..........................ACCTTCGACGGGCTTAACA..................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00101000000000
.......................GTCACCTTCGACGGGCTTAACAGG................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.00100000010000
......................CGTCACCTTCGACGGGCTTAACAGG................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.00101000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTCCAGAATCGAGCACCGGTTG.....................2311.00100000010000
.......................GTCACCTTCGACGGGCTTAACAGGAAAGT...........................................................................................................................................................................................................................................................................................................................................................................................................................................2911.00100000010000
..........................ACCTTCGACGGGCTTAACAGGAAAGT...........................................................................................................................................................................................................................................................................................................................................................................................................................................2611.00100000010000
...............................CGACGGGCTTAACAGGAAAGT...........................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100000010000
................................................................................................................................................................................................................................................................................................................................................................................................................................................TATAGTCCAGAATCGAGC.............................1811.00100100000000
......................CGTCACCTTCGACGGGCTTAACAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.00100000010000
................................GACGGGCTTAACAGGAAA.............................................................................................................................................................................................................................................................................................................................................................................................................................................1811.00101000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCGAGCACCGGTTGGGTGGA...............2111.00100000010000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATCGAGCACCGGTTGGGT..................2011.00101000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCCAGAATCGAGCACCGGTTGGGTGG................2711.00100100000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCCAGAATCGAGCACCGG........................1911.00100000010000
................................GACGGGCTTAACAGGAAAGT...........................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00100000010000
............................................................................................................................................................................................................................................................................................................................................................................................................................................GATTTATAGTCCAGAATCGAGCACCG.........................2611.00100000010000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................AATCGAGCACCGGTTGGGTGGAT..............2311.00100000010000
droEug1
TC-CAAAA-TGCTGC-CTCTGTCGTTACCTTCGATGGACTCAACAGGAAAGTTGTAAGTTATTTAAA-------------------TTTTAACTTAATAACTTTTAACT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droBia1
TC-CAGAA-CGCCGC-CTATGTCGTTACCTTCGACGGACTCAACAGAAAAGTGGTAAGTTATTTGGG--------------------------------------------------------------------------TTTCTATG-GA------------------------------------------------AAATAAATA--------------------------------------------------------------------------------------------CTAACT----------------A--CACAGAATATTGTTCCCTATA------------------------------------------------ATTTTATA------ACATTATTC-A--TCTATAGATCTACAGCGCCGAGTCGAAGACCGGCTGGGTGGACCTCTATACCGCTCCSizeHit CountTotal NormTotal
No Reads
droTak1
TC-CAGAA-CGCCGC-CTCTGTCGTTACCTTCGACGGACTCAACAGGAAAGTGGTAAGTTATTTAG------TGAAGTATTACAT-----A----------------------------------------------------------------------------------------------G------------------------------------------------------------------------------------------------------------------------------------GAT--T--CTT--------------------------------------------------------------------------------TTGATGTTG-T--CTAATAATATAATTACACAGAA---AAAATGTTTTGAGTTGAA--------------SizeHit CountTotal NormTotal
No Reads
droEle1
TT-CAGAA-TGCCGC-GTCCGTTGTGACTTTCGATGGGCTCAGCAGAAGTGTGGTAAGTAACAATA----------------------------TAAACTAATTTGATAAGC-----------------------------AATACAGT-TAT---------------------------GTAAGT---------------TAC---------AATAATAATAATAA------------------------------------------------------------------------TAATTATTC----AATTCCACA--A--GCT--------------------------------------------------------------------------------TTTATATTA-A--ACTATAAATTAGCAA---------------------------------TACAATATCSizeHit CountTotal NormTotal
No Reads
droRho1
TT-TTAAT-AAT----------------------------------------------TAA----A----------------------------------------------------------------------------------------------------------------------------------------------------TCTAAAATAAATA----------------------------------------------------------------------------------------TTTTTA--T--ACT--------------------------------------------------------------------------------TCTATATTC-T--CTTGCAGATCTACAGCGCGGAATCGAAGACCGGCTGGGTTGATCTCTATACCGCTCCSizeHit CountTotal NormTotal
No Reads
droFic1
TC-CAGAA-TGCCGC-ATATGTCGTTACCTTCGACGGTCTTAACAGGAAGGTGGTAAGTCACTTTTAACCATTACAAAATTGGATTTTATAAGATAAACAAA-----------A-------------------------------------------CCGAATTACTAGCT------------------------------------------------------------------------------------------TAACATCAGAACAAATTAAAAATCC-----ATTTAT-----------------TTAAATT------------------------------------------------------------------------------------A-----------------------------------------------------------------ACGTTCTTSizeHit CountTotal NormTotal
No Reads
droKik1
TT-CAGAA-TGCCGC-CTATGTGGTAACCTTTGATGGACTCAACAGGCGGGTGGTAAGTGATTCTA-----CTGAAA----------------------------------------------------------------TATACATA-TAT---------------------------GAAGAT---------------TGCAGCTG--------------------------------------------------------------------------------------------GTTATATCCTTGA--------------T--------------------------------------------------------------------------------TCCTCTCTG-C--CTATCAGATCTACAGCACCGAATCAAAGACGGGTTGGGTGGACCTCTATACCGCTCCSizeHit CountTotal NormTotal
No Reads
droAna3
TT-CAGAA-TGCCGC-CTATGTGGAGACCTTCAACGGACTCACCCGCAAGACTGTAAGTAAATAAA-----CCAAA-------------------------------------------------------------------------------------------------------------GAAACCTCTC--------------------------------------------------------------------------------------------------------------------AGA------CATCCT-CT--------------------------------------------------------------------A--GAAAT-----ATCCTTCC-C--TACGTAGATCTACAGAACGGTATCAGAAACAGGATGGGTGGATCTTTACACCGCCCCSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
....AGAA-TGCCGC-CTATGTGGA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................1912.002002000
.........................GACCTTCAACGGACTCACCCGC................................................................................................................................................................................................................................................................................................................................................................................................................................................2212.002020000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCAGAAACAGGATGGGTGG................2011.001100000
........................AGACCTTCAACGGACTCACCCGCAAGAC...........................................................................................................................................................................................................................................................................................................................................................................................................................................2811.001010000
.............................TTCAACGGACTCACCCGCAA..............................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001100000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTATCAGAAACAGGATGGGTGG................2311.001000010
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAACAGGATGGGTGGATCTTTACACC.....2711.001000001
...............................................................................................................................................................................................................................................................................................................................................................................................................................................CTACAGAACGGTATCAGAAACAGGATGG....................2811.001010000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................AACGGTATCAGAAACAGGATGGGTG.................2511.001000001
........................AGACCTTCAACGGACTCACC...................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001010000
...........................CCTTCAACGGACTCACCCGCAA..............................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001010000
..........................ACCTTCAACGGACTCACCC..................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001010000
.........................GACCTTCAACGGACTCACCC..................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001010000
droBip1
TT-CAGAA-TGCCGC-CTATGTGGTAACCTTCAACGGACTTACCCGAAAGACTGTAAGTAACTAAT-----CCAAA-------------------------------------------------------------------------------------------------------------GAAATATTTT--------------------------------------------------------------------------------------------------------------------TAA------CATTTT-CT-----------------------------------------------------------------------AGCAT-----ATCCTTTC-C--TACGCAGATCTATAGCACGGAATCAAAAACAGGATGGGTGGATCTTTACACCGCCCCSizeHit CountTotal NormTotal
No Reads
dp5
TT-CAGAA-TGCCGC-CTATGTGGTAACCTTCGATGGACTTAATCGGAAAGTGGTAAGTGCCTCCC--------AG-------------------------------------------------------------------------------------------------------------GGCCGGTTCT--------------------------------------------------------------------------------------------------------------------GGT------CCCC--------------------C-A------------------------------------------------ACTGTAGCAT-----AT--TGTC-C--CTCGTAGATCTACAGCACGGAATCAAAAACTGGCTGGGTAGATCTTTACACGGCTCCSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
.........TGCCGC-CTATGTGGTAACCTTCGATGG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010100000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAGCACGGAATCAAAAACTGGC.......................2311.0010010000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTGGCTGGGTAGATCTTTA.........2011.0010100000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCAAAAACTGGCTGGGTA.................1911.0010100000000
.....................................ACTTAATCGGAAAGTGAC........................................................................................................................................................................................................................................................................................................................................................................................................................................1840.2510010000000
droPer2
TTTCAGAACTGCCGCCCTATGTCGTACCCTCAGATGAACTTAATCGGAAAGTAGTAAATTGCCTCC------CAGA--GCCG-----------------------------------------------------------------------------------------------------------GGTTCT--------------------------------------------------------------------------------------------------------------------GCT------CCCC--------------------CAA------------------------------------------------ACTGTAGCAT-----AT--CGTC-C--CTCGTAGATCTACTGCACGGAATCAAATACTGGCTGAGTAGATCTTTACACGGCTGCSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
No Reads
droWil2
TA-CAAAA-TGCGGC-ATACATTGTAACATTTGATGGACTTACTCGAAAGGAGGTAAGTTTTCAGA---------AG----------------------------------------------------------------TTTGCATA-GATGAAATCAAAGTCGTGATAGAACGTTCTGTTAAT---------------TTT---------ATCAAAAACCCTTC----------------------------------------------------------------------------------------GTT--TTAT--TTA----------------------------------------------------------------------TATA------AATTCCCTGCATTTACGCAGATCTACAGCACCGAGTCAAAAACCGGTTGGGTGGATCTATACACTGCCCCSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
.................TACATTGTAACATTTGATGGACT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................2312.00211000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGCACCGAGTCAAAAACCG.........................2011.00100010
...............................................................................................................................................................................................................................................................................................................................................................................................................................................CTACAGCACCGAGTCAAAAACC..........................2211.00100010
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................CCGAGTCAAAAACCGGTTGGGTGGAT..............2611.00100010
........................................................................................................................................................................................................................................................................................................................................................................................................................................................CGAGTCAAAAACCGGTTGGGTGGAT..............2511.00101000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGTCAAAAACCGGTTGGGTGGAT..............2411.00100100
TA-CAAAA-TGCGGC-ATACATTGTAACATT................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.00101000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................CGAGTCAAAAACCGGTTGGGT..................2111.00100010
........................TAACATTTGATGGACTTACTCGAAAGGA...........................................................................................................................................................................................................................................................................................................................................................................................................................................2811.00101000
droVir3
TT-CAGAA-TGCAGC-CTATGTTGTCAGCTTCGATGGACTAAGCCGGAAGCTGGTAAGTGAACG----------AAGAACTGCACTTTGGG--------------------------------------------------TT---------------------------------------------------C---------AACCATCCACTCTC---TCTCTC----------------------------------------------------------------------------------------TCTCTC--T--CTC--------------------------------------------------------------------------------TCGCTCTCC-A--CCTGCAGCTGTATAGCACTGAATCGAAAACAGGCTGGGTTGATCTTTATACGGCGCCSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
.............................TTCGATGGACTAAGCCGGAA..............................................................................................................................................................................................................................................................................................................................................................................................................................................2012.002000000000200000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTTGATCTTTATACGGCGCC2112.002000000000000000000001000010000000000000000000000000000000000000
.............................TTCGATGGACTAAGCCGGA...............................................................................................................................................................................................................................................................................................................................................................................................................................................1912.002000000020000000000000000000000000000000000000000000000000000000
.T-CAGAA-TGCAGC-CTATGTTGTCAGCT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.001001000000000000000000000000000000000000000000000000000000000000
..................ATGTTGTCAGCTTCGATGGA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001000000000000000000000001000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGTTGATCTTTATACGGCGC.2111.001000000000000000000000000000000000000000000000000000000000000010
...............................CGATGGACTAAGCCGGAA..............................................................................................................................................................................................................................................................................................................................................................................................................................................1811.001001000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGGTTGATCTTTATACGGCG..2111.001000000000000000000000000000001000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAGCACTGAATCGAAAACAGGC.......................2311.001000000000000000000000000000000010000000000000000000000000000000
.............................TTCGATGGACTAAGCCGGAAGCTGC.........................................................................................................................................................................................................................................................................................................................................................................................................................................2511.001000000000000000000000000000000000000000000000000000000000000010
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAACAGGCTGGGTTGATCTT...........2111.001001000000000000000000000000000000000000000000000000000000000000
droMoj3
TA-TGAAT-TATG-------------------------------------------------------------AAAAACA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AC-----------------TTCGCCT--G--ATT--------------------------------------------------------------------------------TCCACTTTG-T--GCTGCAGCTTTACAGCATAGAATCTAAGACCGGCTGGGTTGACCTTTATACGGCCCCSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
No Reads
droGri2
TA-TGAAT-CAG----------------------------------------------TCA----A------TTAAAAGCTGCAT-----------------------------------------------------------------------------------------------------------TT----------------------------------------------------------------------------------------------------------------------AA----TAC--C--TCC--------------------------------------------------------------------------------TTGAACTTC-A--TTCACAGCTCTACAGCACAGAATCGAAGACTGGTTGGGTTGATCTGTATACGGCACCSizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
............................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGAAGACTGGTTGGGTTGATC.............2211.00101
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACTGGTTGGGTTGATCT............1811.00101

Generated: 05/19/2015 at 12:01 AM