ID:

dsi_13249

 Coordinate:

3r:10070287-10070470 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-53.8 -53.7 -53.5

Flybase annnotation

CDS [3r_10070271_10070286_+]; five_prime_UTR [3r_10070165_10070270_+]; exon [3r_10070165_10070286_+]; exon [3r_10070471_10070683_+]; CDS [3r_10070471_10070683_+]; intron [3r_10070287_10070470_+]

No Repeatable elements found

Sense Strand Reads

##################################################----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
ATTTTTCGTTGAGAGTATCCTTCAATTCTGCAAGATGTCGATGTTTTGGGGTAAGTCGAACTGATCTCACATGCCCCCTCCGGGCTGGCTGTGCTCGCGAGCTGTTGGCTGCTCCGACCGCGCTTCTATTGCCACCACGTGCTTGCCGCTCGATTTGCCGGCAGCGTGGAGCGGCGCCATTTGCACGCCGAGGTAAAGTAAACCATGTTTTTGACCAACTGTGTCCCCTTCCAGGTCTGAACATGAAGCCTGAGCGCAAATACTCGCAGACGATCATCAAGTCG
**************************************************....((((((............((((.....))))((((((((.(((.((((........))))))).))))........))))((((((...((((((.......)).))))))))))..(((((.........))))).(((.......))).....))))))...................************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553486
Makindu_3 day-old ovaries
 SRR553485
Chicharo_3 day-old ovaries
 SRR902008
ovaries
 SRR553487
NRT_0-2 hours eggs
 SRR553488
RT_0-2 hours eggs
 SRR618934
dsim w501 ovaries
 M053
female body
 SRR902009
testis
 M025
embryo
 M023
head
 O001
Testis
 GSM343915
embryo
 M024
male body		 O002
Head
.............................................................................................................................................................................................................................................TGAACATGAAGCCTGAGCGCAAATACT.................... 27 0 1 84.00 84 34 29 12 3 3 3 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................................................................TCTGAACATGAAGCCTGAGCGCAAA........................ 25 0 1 82.00 82 28 24 22 6 1 0 0 0 1 0 0 0 0 0
...................................................................................................................................................................................................................................................TGAAGCCTGAGCGCAAATACTCGCAGA.............. 27 0 1 67.00 67 28 26 0 7 4 1 1 0 0 0 0 0 0 0
......................................................................................................................................................................................................................................TGGGGTCTGAACATGAAGCCTGAGCGCA.......................... 28 3 1 54.00 54 26 24 1 3 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................................................................TGAACATGAAGCCTGAGCGCAAATAC..................... 26 0 1 49.00 49 10 2 28 2 1 0 0 6 0 0 0 0 0 0
.....................................................................................................................................................................................................................................TTGGGGTCTGAACATGAAGCCTGAGCGCA.......................... 29 3 1 34.00 34 13 18 3 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................................................TGGGGTCTGAACATGAAGCCTGAGCGCAAA........................ 30 3 1 33.00 33 17 14 0 2 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................................................................TGAACATGAAGCCTGAGCGCAAATA...................... 25 0 1 27.00 27 7 3 15 1 1 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................................................................TTTGAACATGAAGCCTGAGCGCAAA........................ 25 1 1 22.00 22 15 0 0 0 7 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................................................TTGGGGTCTGAACATGAAGCCTGAGCGCAAA........................ 31 3 1 18.00 18 1 14 0 2 1 0 0 0 0 0 0 0 0 0
............................TGCAAGATGTCGATGTTTTGGGGTC....................................................................................................................................................................................................................................... 25 1 1 17.00 17 6 4 0 1 1 2 1 0 2 0 0 0 0 0
.............................................................................................................................................................................................................................................TGAACATGAAGCCTGAGCGCAAA........................ 23 0 1 16.00 16 8 4 2 2 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................................................................TCTGAACATGAAGCCTGAGCGCAA......................... 24 0 1 10.00 10 4 5 1 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................................................................TGAACATGAAGCCTGAGCGCAAAT....................... 24 0 1 9.00 9 3 0 6 0 0 0 0 0 0 0 0 0 0 0
.........TGAGAGTATCCTTCAATTCTGCAAGA......................................................................................................................................................................................................................................................... 26 0 1 9.00 9 5 2 0 1 0 0 0 0 0 0 0 1 0 0
.................................................................................................................................................................................................................................................CATGAAGCCTGAGCGCAAATACTCGCAGA.............. 29 0 1 8.00 8 2 4 0 2 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................................................TGGGGTCTGAACATGAAGCCTGAGC............................. 25 3 1 7.00 7 4 2 0 1 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................................................................TGAACATGAAGCCTGAGCGCAAATAA..................... 26 1 1 7.00 7 0 0 7 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................................................................TGAGCGCAAATACTCGCAGACGATCA........ 26 0 1 7.00 7 2 1 1 1 1 0 1 0 0 0 0 0 0 0
......................................................................................................................................................................................................................................TGGGGTCTGAACATGAAGCCTGAGCGC........................... 27 3 1 6.00 6 2 1 2 1 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................................................................................CGCAAATACTCGCAGACGATCATCAA.... 26 0 1 6.00 6 4 1 0 0 1 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................................................TTGGGGTCTGAACATGAAGCCTG................................ 23 3 1 6.00 6 1 0 1 1 2 1 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................................................TGGGGTCTGAACATGAAGCCTGAG.............................. 24 3 1 6.00 6 1 0 2 0 1 2 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................................................TTTGGGGTCTGAACATGAAGCCTGAG.............................. 26 3 1 6.00 6 0 2 3 0 0 0 1 0 0 0 0 0 0 0
......................................................................................................................................................................................................................................................AGCCTGAGCGCAAATACTCGCAGACGA........... 27 0 1 5.00 5 2 2 0 0 0 1 0 0 0 0 0 0 0 0
........................................................................................................................................................................................................................................GGGTCTGAACATGAAGCCTGAGCGCAAA........................ 28 1 1 4.00 4 1 1 2 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................................................TTGAACATGAAGCCTGAGCGCAAATACT.................... 28 1 1 4.00 4 4 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................................................TGGGGTCTGAACATGAAGCCTGAGCGCAA......................... 29 3 1 4.00 4 2 1 1 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................................................TTGGGGTCTGAACATGAAGCCTGA............................... 24 3 1 4.00 4 0 0 4 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................................................................TGAACATGAAGCCTGAGCGCAAATACTC................... 28 0 1 4.00 4 0 0 2 1 1 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................................................................TGAAGCCTGAGCGCAAATACTCGCA................ 25 0 1 4.00 4 2 1 0 0 0 1 0 0 0 0 0 0 0 0
.....................TCAATTCTGCAAGATGTCGATGTT............................................................................................................................................................................................................................................... 24 0 1 4.00 4 1 3 0 0 0 0 0 0 0 0 0 0 0 0
....................TTCAATTCTGCAAGATGTCGATGTT............................................................................................................................................................................................................................................... 25 0 1 4.00 4 1 1 2 0 0 0 0 0 0 0 0 0 0 0
.................TCCTTCAATTCTGCAAGATGTCGATG................................................................................................................................................................................................................................................. 26 0 1 4.00 4 0 0 1 0 1 0 2 0 0 0 0 0 0 0
.......................AATTCTGCAAGATGTCGATGTTTTG............................................................................................................................................................................................................................................ 25 0 1 3.00 3 0 0 0 1 1 1 0 0 0 0 0 0 0 0
.........................TTCTGCAAGATGTCGATGTTTTG............................................................................................................................................................................................................................................ 23 0 1 3.00 3 0 2 0 0 0 0 0 0 1 0 0 0 0 0
..................................................................................................................................................................................................................................................ATGAAGCCTGAGCGCAAATACTCGCAGA.............. 28 0 1 3.00 3 0 3 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................................................................TTTGAACATGAAGCCTGAGCGCAA......................... 24 1 1 3.00 3 2 0 0 0 1 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................................................TTGGGGTCTGAACATGAAGCCTGAGCGC........................... 28 3 1 3.00 3 2 0 0 1 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................................................................TGAGCGCAAATACTCGCAGACGATCAT....... 27 0 1 3.00 3 1 0 0 1 0 0 1 0 0 0 0 0 0 0
....................................................................................................................................................................................................................................TTTGGGGTCTGAACATGAAGCCTGAGCGCA.......................... 30 3 1 3.00 3 0 3 0 0 0 0 0 0 0 0 0 0 0 0
.................TCCTTCAATTCTGCAAGATGTCGAT.................................................................................................................................................................................................................................................. 25 0 1 3.00 3 1 0 0 0 2 0 0 0 0 0 0 0 0 0
...............TATCCTTCAATTCTGCAAGATGTCGA................................................................................................................................................................................................................................................... 26 0 1 2.00 2 1 1 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................................................................GGGGTCTGAACATGAAGCCTGAGCGCA.......................... 27 2 1 2.00 2 0 0 2 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................................................GTCTGAACATGAAGCCTGAG.............................. 20 0 1 2.00 2 0 0 0 0 0 0 0 0 2 0 0 0 0 0
.....................TCAATTCTCCAAGATGTCGATGTT............................................................................................................................................................................................................................................... 24 1 1 2.00 2 0 0 0 0 0 2 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................................................................AGCCTGAGCGCAAATACTCGCAGA.............. 24 0 1 2.00 2 0 2 0 0 0 0 0 0 0 0 0 0 0 0
..........................TCTGCAAGATGTCGATGTTTTGGGG......................................................................................................................................................................................................................................... 25 0 1 2.00 2 0 0 0 1 0 1 0 0 0 0 0 0 0 0
.........................TTCTGCAAGATGTCGATGTTT.............................................................................................................................................................................................................................................. 21 0 1 2.00 2 0 0 0 0 0 0 0 2 0 0 0 0 0 0
.............................................................................................................................................................................................................................................TGAACATGAAGCCTGAGCGCAA......................... 22 0 1 2.00 2 1 1 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................................................................TCTGAACATGAAGCCTGAGCGCAAATA...................... 27 0 1 2.00 2 0 1 1 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................................................TTGGGGTCTGAACATGAAGCCTGAGCGCAA......................... 30 3 1 2.00 2 1 1 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................................................TTGGGGTCTGAACATGAAGCCTGAG.............................. 25 3 1 2.00 2 0 1 1 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................................................TTGAACATGAAGCCTGAGCGCAAA........................ 24 1 1 2.00 2 1 0 0 0 1 0 0 0 0 0 0 0 0 0
............................TGCAAGATGTCGATGTTTTGGGGTA....................................................................................................................................................................................................................................... 25 0 1 2.00 2 0 0 2 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................................................................TGAAGCCTGAGCGCAAATACTCGCAGT.............. 27 1 1 2.00 2 1 1 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................................................TTGGGGTCTGAACATGAAGCCTGAGC............................. 26 3 1 2.00 2 1 0 0 0 1 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................................................TGGGGTCTGAACATGAAGCCTGA............................... 23 3 1 2.00 2 1 0 1 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................................................................AGCGCAAATACTCGCAGACGATCAT....... 25 0 1 2.00 2 1 0 0 1 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................................................................CATGAAGCCTGAGCGCAAATACTCGCA................ 27 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
....TCCGTTGAGAGTATCCTTCAATTCTGCA............................................................................................................................................................................................................................................................ 28 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
........................ATTCTGCAAGATGTCGATG................................................................................................................................................................................................................................................. 19 0 1 1.00 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0
.......................AATTCTGCAAGATGTCGATGTTTTGG........................................................................................................................................................................................................................................... 26 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0
.................TCCTTCAATTCTGCAAGATGTCGA................................................................................................................................................................................................................................................... 24 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
ATTTTTCGTTGAGAGTATCCT....................................................................................................................................................................................................................................................................... 21 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0
............................................................................................................................................................................................................................................................AGCGCAAATACTCGCAGACGATCATCAAGT.. 30 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
.........TGAGAGTATCCTTCAATTCTGCAAGATGT...................................................................................................................................................................................................................................................... 29 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0
..............GTATCCTTCAATTCTGCAAGATGTCGA................................................................................................................................................................................................................................................... 27 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................................................................CATGAAGCCTGAGCGCAAATACTCGC................. 26 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................................................................TAAACATGAAGCCTGAGCGCAAATACT.................... 27 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................................................................AGCGCAAATACTCGCAGACGATCATA...... 26 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................................................................AACATGAAGCCTGAGCGCAAATAC..................... 24 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0
.........................TTCTGCAAGATGTCGATGT................................................................................................................................................................................................................................................ 19 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0
....................................................................................................................................................................................................................................TTTGGGGTCTGAACATGAAGCC.................................. 22 3 2 1.00 2 1 1 0 0 0 0 0 0 0 0 0 0 0 0
.................TCCTTCAATTCTGCATGATGTCGATG................................................................................................................................................................................................................................................. 26 1 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0
..........................................................................................GTGCTCGCGAGCTGTTGGCTGC............................................................................................................................................................................ 22 0 1 1.00 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0
...........................................................................................................................................................................................................................................TCTGAACATGAAGCCT................................. 16 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0
..........GAGAGTATCCTTCAATTCTGCAAGG......................................................................................................................................................................................................................................................... 25 1 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0
............................................................................................................................................................................................................................................................AGCGCAAATACTCGCAGACGATCATC...... 26 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................................................................TGAACATGAGGCCTGAGCGCAAATA...................... 25 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
..........................TCTGCAAGATGTCGATG................................................................................................................................................................................................................................................. 17 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
.....TCGTTGAGAGTATCCTTCAATTCTGCAA........................................................................................................................................................................................................................................................... 28 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................................................................TTAAGCCTGAGCGCAAATACTCGCAGA.............. 27 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................GATGTCGATGTTTTGGGGTCTG..................................................................................................................................................................................................................................... 22 2 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0
.............................................................................................................................................................................................................................................TGAACATGAAGCCTGAGCGCAAATACTCGC................. 30 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
.................TCCTTCAATTCTGCAAGATGTCGATA................................................................................................................................................................................................................................................. 26 1 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................................................TTTGGGGTCTGAACATGAAGCCTG................................ 24 3 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0
...................................................................................................................................................................................................................................................TGAAGCCTGAGCGCAAATATTCGCAGA.............. 27 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
............................TGCAAGATGTCGATGTTTTGGG.......................................................................................................................................................................................................................................... 22 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................................................AGGGGTCTGAACATGAAGCCTGAGCGCAAA........................ 30 3 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
...TTTCGTTGAGAGTATCCTTCAATTC................................................................................................................................................................................................................................................................ 25 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0
...................................................................................................................................................................................................................................................TGAAGCCTGAGCGCAAATACTCGCAGACGA........... 30 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................AAGATGTCGATGTTTTGGGGTA....................................................................................................................................................................................................................................... 22 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0
.............................................................................................................................................................................................................................................TGAACATGGAGCCTGAGCGCAAATACT.................... 27 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................................................................TGAACATGAAGCCTGAGCGCAAAA....................... 24 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................................................TTTGGGGTCTGAACATGAAGCCTGAGCGCAAA........................ 32 3 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................................................................................CGCAAATACTCGCAGACGATCATCA..... 25 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................................................................TTTGAACATGAACCCTGAGCGCAA......................... 24 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................................................CTGAACATGAAGCCTGAGC............................. 19 0 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0
...............................................................................................................................................................................................................................................................GCAAATACTCGCAGACGATCATCAA.... 25 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................................................................GAAGCCTGAGCGCAAATACTCGCAGA.............. 26 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
............................TGCAAGATGTCGATGTTTTGGGGTT....................................................................................................................................................................................................................................... 25 1 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................................................................TGAAGCCTGAGCGCAAATACTCGCAGTA............. 28 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................................................................TTTGAACATGAAGCCTGAGCGCA.......................... 23 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................................................................TGAAGCCTGAGCGCAAATACTCGCAA............... 26 1 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................................................................TTAACATGAAGCCTGAGCGCAAATACT.................... 27 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................GTGCTCGCGAGCTGTTGGCTG............................................................................................................................................................................. 21 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0
.......................................................................................................................................................................................................................................GGGGTCTGAACATGAAGCCTGAGCGCAAA........................ 29 2 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0
.......................................................................................................................................................................................................................................................GCCTGAGCGCAAATACTCGCAGA.............. 23 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1
..............................................................................................................................................................................................................................................................CGCAAGTACTCGCAGACGATCATCAA.... 26 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................GGTAAGTCGAACTGATCTCACATGCCCC............................................................................................................................................................................................................... 28 0 1 1.00 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0
....TCCGTTGAGAGTATCCTTCAATTCTGCAAGA......................................................................................................................................................................................................................................................... 31 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................................................................TGAACATGAAGCCTGAGCGCAAATACTCGCA................ 31 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................................................................TCTGAACATGAAGCCTGAGCGCAGA........................ 25 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................................................................................................................ACATGAAGCCTGAGCGCAAATACT.................... 24 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0
....................................................................................................................................................................................................................................................GAAGCCTGAGCGCAAATACTCGCATACGA........... 29 1 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................................................................TGAGCGCAAATACTCGCAGACGCTCATCA..... 29 1 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................................................................TGAACATGAACCCTGAGCGCAAATACT.................... 27 1 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................................................................GGAACATGAAGCCTGAGCGCAAATACT.................... 27 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................................................................TTTGAACATGAAGCCTGAGCACAAATACT.................... 29 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
............................TGCAAGATGTCGATGTTTTGGGGTCTGA.................................................................................................................................................................................................................................... 28 3 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
.TTTTTCGTTGAGAGTATCCTTCAA................................................................................................................................................................................................................................................................... 24 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................................................TTGAACATGAAGCCTGAGCGCAAAT....................... 25 1 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0
............................TGCAAGATGTCGATGTTTTGGGGTCT...................................................................................................................................................................................................................................... 26 2 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0
.......................................................TCGAACTGATCTCACTTGCCCCC.............................................................................................................................................................................................................. 23 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................................................................GGGGTCTGAACATGAAGCCTGAGCGCAAAC....................... 30 3 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................................................................TGAAGCCTGAGCGCAAATACTCGAAGA.............. 27 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................................................................TGAAGCCTGAGCGCAAATACTCGCAGAA............. 28 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
.....................TCAATTCTGCAAGATGTCGATGTTT.............................................................................................................................................................................................................................................. 25 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0
........TTGAGAGTATCCTTCAATTCTGCAAGA......................................................................................................................................................................................................................................................... 27 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................................................................TGAACATGAAGCCTGAGCGCAAATACA.................... 27 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................................................................................TGCAAATACTCGCAGACGATCATCAA.... 26 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................................................................................GCCTGAGCGCAAATACTCGCAGACGATCA........ 29 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
............................TGCAAGATGTCGATGTTTT............................................................................................................................................................................................................................................. 19 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0
............................................................................................................................................................................................................................................CTGAACATGAAGCCTGAGCGC........................... 21 0 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0
........................ATTCTGCAAGATGTCGATGTTT.............................................................................................................................................................................................................................................. 22 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0
....TTCGTTGAGAGTATCCTTCAATTCT............................................................................................................................................................................................................................................................... 25 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0
..............................................................................................................................................................................................................................................GAACATGAAGCCTGAGCGCAAATACT.................... 26 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................................................................TGAGCGCAAATACTCGCAGACGATCATC...... 28 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
..........GAGAGTATCCTTCAATTCTGCAAGATGT...................................................................................................................................................................................................................................................... 28 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0
.........TGAGAGTATCCTTCAATTCTGC............................................................................................................................................................................................................................................................. 22 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0
.....................TCAATTCTGCAAGATGTCGATGTTTTGGGG......................................................................................................................................................................................................................................... 30 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................................................................................................CCTGAGCGCAAATACT.................... 16 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................................................TCCCCTTCCAGGTCTGAACATGAAGCC.................................. 27 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................................................................................................TCGCAGACGATCATCAAGTC. 20 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0
..........................................................................................................................................................................................................................................................TGAGCGCAAATACTCGCAGACGATCATCAA.... 30 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................................................................................................................ACATGAAGCCTGAGCGCAAATACTCGCAGA.............. 30 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
...TTCCGTTGAGAGTATCCTTCAATTCT............................................................................................................................................................................................................................................................... 26 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................................................TTTGGGTCTGAACATGAAGCCTGAGCGCA.......................... 29 3 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................TTCTGCAAGATGTCGATGTTTTGGG.......................................................................................................................................................................................................................................... 25 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................................................................................GCGCAAATACTCGCAGACGATCATCAAGT.. 29 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
..TTTTCGTTGAGAGTATCCTTCAATTCTGC............................................................................................................................................................................................................................................................. 29 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................................................................AAGCCTGAGCGCAAATACTCGCAGACGA........... 28 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................................................................TGAACATGAAGCCTGAGCGCAAAAAA..................... 26 2 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................................................................................TACTCGCAGACGATCATCAAGA.. 22 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................................................TTGGGGTCTGAACATGAAGCC.................................. 21 3 3 0.67 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................................................................TGAACATGAAGCCTGA............................... 16 0 2 0.50 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0
....................................GTAGAAGTTTTGGCGTAAG..................................................................................................................................................................................................................................... 19 3 18 0.50 9 0 0 0 0 0 0 0 0 4 3 0 0 2 0
.............................GCAAGATGTCGATGTT............................................................................................................................................................................................................................................... 16 0 2 0.50 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................................................GTTTGAACATGAAGCC.................................. 16 1 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................................ATCAACTGTGCCCCCTCCCAG.................................................. 21 3 6 0.17 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0
..............................................................................................................................................................................................AGCTAAAGAACACCATGTTTT......................................................................... 21 3 6 0.17 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0
...............................................................................................................................................................GGCAGCGTCGAGCGG.............................................................................................................. 15 1 12 0.08 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................................................TACGATGTTTTTGACCAA.................................................................. 18 2 13 0.08 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................................................TACCAGGTCCGAACATGCA..................................... 19 3 17 0.06 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................................................ACCAGGTCTGAACAT........................................ 15 1 18 0.06 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0

Anti-sense strand reads

TAAAAAGCAACTCTCATAGGAAGTTAAGACGTTCTACAGCTACAAAACCCCATTCAGCTTGACTAGAGTGTACGGGGGAGGCCCGACCGACACGAGCGCTCGACAACCGACGAGGCTGGCGCGAAGATAACGGTGGTGCACGAACGGCGAGCTAAACGGCCGTCGCACCTCGCCGCGGTAAACGTGCGGCTCCATTTCATTTGGTACAAAAACTGGTTGACACAGGGGAAGGTCCAGACTTGTACTTCGGACTCGCGTTTATGAGCGTCTGCTAGTAGTTCAGC
**************************************************....((((((............((((.....))))((((((((.(((.((((........))))))).))))........))))((((((...((((((.......)).))))))))))..(((((.........))))).(((.......))).....))))))...................************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR902009
testis
 SRR553487
NRT_0-2 hours eggs
 SRR618934
dsim w501 ovaries
 O001
Testis
 SRR553488
RT_0-2 hours eggs
 M023
head
 SRR553486
Makindu_3 day-old ovaries
 GSM343915
embryo
....AGGCAACTCTCATAGGAAGT.................................................................................................................................................................................................................................................................... 20 1 1 2.00 2 2 0 0 0 0 0 0 0
.....................AGTTAAGACGTTCTACAGCTA.................................................................................................................................................................................................................................................. 21 0 1 2.00 2 1 0 0 1 0 0 0 0
..........CTCTCATAGGAAGTTAAGACG............................................................................................................................................................................................................................................................. 21 0 1 2.00 2 2 0 0 0 0 0 0 0
..................GGAAGTTAAGACGTTCCACAG..................................................................................................................................................................................................................................................... 21 1 1 1.00 1 0 1 0 0 0 0 0 0
..............TATAGGAAGTTAAGACGTTCTAC....................................................................................................................................................................................................................................................... 23 1 1 1.00 1 1 0 0 0 0 0 0 0
...............ATAGGAAGTTAAGACGTTCT......................................................................................................................................................................................................................................................... 20 0 1 1.00 1 1 0 0 0 0 0 0 0
....................................................................................................................................................................................................................................................................ATGAGCGTCTGCTAGTAGTTC... 21 0 1 1.00 1 1 0 0 0 0 0 0 0
.....................................................................................................................................................................................................................................................................TTTGCGTCTGCTAGTAGTTCA.. 21 2 1 1.00 1 1 0 0 0 0 0 0 0
..........................................................................................................................................................................................................................................................ACTCGCGTTTATGAG................... 15 0 1 1.00 1 0 0 1 0 0 0 0 0
......................................................................................................................................................................................................................TGTTGACACAGGGGAAGGT................................................... 19 1 1 1.00 1 1 0 0 0 0 0 0 0
.....................................................................................................................................................................................................................................................................TGAGCGTCTGCTAGTAGTTC... 20 0 1 1.00 1 1 0 0 0 0 0 0 0
..............................................................................................................................................................................................................CAGAAACTGGTTAACAAAGGG......................................................... 21 3 2 0.50 1 0 0 0 0 0 1 0 0
..............................GTTCTACAGCTACAA............................................................................................................................................................................................................................................... 15 0 3 0.33 1 0 1 0 0 0 0 0 0
.............................................................................................................................................................................................................................ACAGGGGGAGGTCCA................................................ 15 1 7 0.29 2 0 0 0 0 0 0 2 0
............................AAGTTCTACAGCTACAA............................................................................................................................................................................................................................................... 17 1 4 0.25 1 0 1 0 0 0 0 0 0
.........................................................................GTGGGAGGACCGACAGACACG.............................................................................................................................................................................................. 21 3 4 0.25 1 0 0 0 0 0 0 0 1
.............................AGTTCTACAGCTACAA............................................................................................................................................................................................................................................... 16 1 7 0.14 1 0 1 0 0 0 0 0 0
.....................................................TCAGCTTGAGCAGAGTGTC.................................................................................................................................................................................................................... 19 3 14 0.14 2 0 0 0 0 2 0 0 0
...............................TTCTACAGCTACAAG.............................................................................................................................................................................................................................................. 15 1 15 0.13 2 0 2 0 0 0 0 0 0
............................AAGTTCTACAGCTACAAG.............................................................................................................................................................................................................................................. 18 2 8 0.13 1 0 0 0 0 1 0 0 0
..........................................................................AGGGAGGCTCGACCGACACT.............................................................................................................................................................................................. 20 3 10 0.10 1 0 0 1 0 0 0 0 0
.................................................................................................................................................................................................................................................................TTTATGAGCGTCGGCCAATA....... 20 3 20 0.10 2 2 0 0 0 0 0 0 0
.................................................................................................................................................................GTCGTACCTGGCCGCGG.......................................................................................................... 17 2 10 0.10 1 0 0 1 0 0 0 0 0
.................................................................................................................................................................................................................................................................TTTATGAGCGTCGGCCAAT........ 19 3 20 0.10 2 2 0 0 0 0 0 0 0
......................................................CAGCTTGAGCAGAGTGT..................................................................................................................................................................................................................... 17 2 10 0.10 1 0 0 0 0 1 0 0 0
.....................................................TCAGCTTGAGCAGAGTG...................................................................................................................................................................................................................... 17 2 11 0.09 1 0 0 0 0 1 0 0 0
.....................................................TCAGCTTGACCAGATTG...................................................................................................................................................................................................................... 17 2 12 0.08 1 0 0 0 0 1 0 0 0

Generated: 04/24/2015 at 10:25 AM