ID:

dsi_13228

 Coordinate:

3l:16393155-16393304 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

Flybase annnotation

intergenic

No Repeatable elements found

Sense Strand Reads

GCTGCACCTTGGACAAGTACACCTGGACCCAAACTCTGGAGGAGGTGGAGGTAAGTCCGGGCACGTGTGGTCCCTAACCCTGTTTTTCTGCCATGTTGGCCCAGTGAGGTGTTGTCATAGTTATATAGTAGCTAGCAGTTTTAGAAGCTCAATCTTTCAATGCGTAATTGATGTCCTTATTTGTGCTGTTGGTTTTTGAGTAGCGTCAAACATAATTATTATTTATTACTTTACTTGTACATTTACATTA
**************************************************........((((.((.(((((....(((...))).....)))))..)))))).((((.......)))).......(((.((((((((((.....(((..((.....(((((.....)))))))..)))......)))))))))).)))..************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553486
Makindu_3 day-old ovaries
 SRR553488
RT_0-2 hours eggs
 SRR902009
testis
 M053
female body
 M025
embryo
 SRR618934
dsim w501 ovaries
 M024
male body		 SRR553487
NRT_0-2 hours eggs
 M023
head
 O001
Testis
 SRR553485
Chicharo_3 day-old ovaries
.................TACACCTGGACCCAAACTCTGGAGGAGG............................................................................................................................................................................................................. 28 0 1 4.00 4 3 1 0 0 0 0 0 0 0 0 0
.......................TGGACCCAAACTCTGGAGGAGGTG........................................................................................................................................................................................................... 24 0 1 3.00 3 0 1 1 0 0 0 0 0 0 0 1
..TGCACCTTGGACAAGTACACCTGGACCC............................................................................................................................................................................................................................ 28 0 1 2.00 2 0 0 0 0 2 0 0 0 0 0 0
..............................AAACTCTGGTGGAGGT............................................................................................................................................................................................................ 16 1 7 1.14 8 5 0 0 0 0 1 0 2 0 0 0
...............................AACTCTGGTGGAGGT............................................................................................................................................................................................................ 15 1 10 1.10 11 2 2 0 0 0 0 0 7 0 0 0
.....ACCTTGGCCAAGTACACCTGGACCC............................................................................................................................................................................................................................ 25 1 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0
.................TACACCTGGACCCAAACTCTGGAGGA............................................................................................................................................................................................................... 26 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0
.........................GACCCAAACTCTGGAGGAGGTGGAA........................................................................................................................................................................................................ 25 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
.......................TGGACCCAAACTCTGGAGGAGGTGG.......................................................................................................................................................................................................... 25 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0
.............CAAGTACACCTGGACCCAAACTCTGG................................................................................................................................................................................................................... 26 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
.............CAAGTACACCTGGACCCAAACTCTGGA.................................................................................................................................................................................................................. 27 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
.....ACCTTGGACAAGTACACCTGGACC............................................................................................................................................................................................................................. 24 0 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0
.........TGGACAAGTACACCTGGACCCAAACTC...................................................................................................................................................................................................................... 27 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
.......................TGGACCCAAACTCTGGAGGAGGTGGA......................................................................................................................................................................................................... 26 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................CTTAATTGTGCTGTTGGTTTT...................................................... 21 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0
.............CAAGTACACCTGGACCCAAACTCTGGAGGA............................................................................................................................................................................................................... 30 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
.................TACACCTGGACCCAAACTCTGGAGGAG.............................................................................................................................................................................................................. 27 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
.......CTTGGACAAGTACACCTGGAC.............................................................................................................................................................................................................................. 21 0 1 1.00 1 0 0 0 0 0 0 0 0 0 1 0
.....................CCTGGACCCAAACTCTGGAGGA............................................................................................................................................................................................................... 22 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0
...................CACCTGGACCCAAACTCTGGAGGAGGT............................................................................................................................................................................................................ 27 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................................................TTAATTGTGCTGTTGGTTTTT..................................................... 21 1 2 0.50 1 0 0 1 0 0 0 0 0 0 0 0
...........................................GGGGGAGGAAAGTCCGGGCT........................................................................................................................................................................................... 20 3 7 0.14 1 0 0 0 0 0 0 1 0 0 0 0
...................................................................................................................................................CTCAAACTTTCAATGGGT..................................................................................... 18 2 9 0.11 1 0 0 0 1 0 0 0 0 0 0 0
..............................................GGAGGAAAGTCCGGGCT........................................................................................................................................................................................... 17 2 9 0.11 1 0 1 0 0 0 0 0 0 0 0 0
................................................................................................................................................................................................TCTTTGAGTAGCGTCGAA........................................ 18 2 9 0.11 1 0 0 0 0 0 1 0 0 0 0 0
...............................................................................................................................GTAGCTAACGGTATTAGA......................................................................................................... 18 3 20 0.10 2 0 0 0 0 0 0 0 2 0 0 0
...............................................GAGGAAAGTCCGGGCT........................................................................................................................................................................................... 16 2 20 0.10 2 0 0 0 0 0 0 0 2 0 0 0
.............................................................................................................................................................GAAGGCGTAACTGATGTCCT......................................................................... 20 3 12 0.08 1 0 0 0 0 0 1 0 0 0 0 0
............................................GGGGAGGAAAGTCCGGGCT........................................................................................................................................................................................... 19 3 15 0.07 1 0 0 0 0 0 0 1 0 0 0 0
....................................................AAGTCCGTGCACCTGTG..................................................................................................................................................................................... 17 2 20 0.05 1 0 0 0 0 0 1 0 0 0 0 0
..............................................................................................................................................................................................GGTTCTTGTGTAGCGT............................................ 16 2 20 0.05 1 0 0 0 0 0 1 0 0 0 0 0
..............................................GTAGGAAAGTCCGGGC............................................................................................................................................................................................ 16 2 20 0.05 1 0 1 0 0 0 0 0 0 0 0 0

Anti-sense strand reads

CGACGTGGAACCTGTTCATGTGGACCTGGGTTTGAGACCTCCTCCACCTCCATTCAGGCCCGTGCACACCAGGGATTGGGACAAAAAGACGGTACAACCGGGTCACTCCACAACAGTATCAATATATCATCGATCGTCAAAATCTTCGAGTTAGAAAGTTACGCATTAACTACAGGAATAAACACGACAACCAAAAACTCATCGCAGTTTGTATTAATAATAAATAATGAAATGAACATGTAAATGTAAT
**************************************************........((((.((.(((((....(((...))).....)))))..)))))).((((.......)))).......(((.((((((((((.....(((..((.....(((((.....)))))))..)))......)))))))))).)))..************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553487
NRT_0-2 hours eggs
 M024
male body		 SRR902009
testis
 SRR618934
dsim w501 ovaries
 SRR553488
RT_0-2 hours eggs
 SRR553486
Makindu_3 day-old ovaries
 M023
head
 M053
female body
 M025
embryo
...................................................................................................................................................GAGTTAGACAGTTAGGAAT.................................................................................... 19 3 20 3.65 73 27 28 0 0 2 4 7 4 1
...................................................GTTCAGGCCCGTGCACACCAG.................................................................................................................................................................................. 21 1 1 1.00 1 0 0 1 0 0 0 0 0 0
.....................................................................................................................................................GTTAGAAAGTTACGCAT.................................................................................... 17 0 5 0.40 2 0 0 0 2 0 0 0 0 0
.................................................................................................................................................TCGAGTTAGACAGTTAGGAAT.................................................................................... 21 3 3 0.33 1 0 1 0 0 0 0 0 0 0
...................................................................................................................................................GAGTTAGACAGTTAGGAATTA.................................................................................. 21 3 4 0.25 1 1 0 0 0 0 0 0 0 0
...................................................................................................................................................GAGTTAGACAGTTAGGCATG................................................................................... 20 3 4 0.25 1 1 0 0 0 0 0 0 0 0
........................................................................................................................................................AGAAAGTTACGCATTAA................................................................................. 17 0 5 0.20 1 0 0 0 1 0 0 0 0 0
.....................................................................................................................................TCGTCTCAATCTTGGAGTTA................................................................................................. 20 3 6 0.17 1 0 0 0 0 1 0 0 0 0
..........................................................................................................................................................AAAGTTACGCATTAA................................................................................. 15 0 6 0.17 1 0 0 0 1 0 0 0 0 0
..................................................................................................................................................CGAGTTAGACAGTTATGAAT.................................................................................... 20 3 8 0.13 1 0 1 0 0 0 0 0 0 0
......................GACCTGGGTTGGAGGCC................................................................................................................................................................................................................... 17 2 8 0.13 1 0 0 0 0 1 0 0 0 0
....................................ACCTCCTCCATCTCC....................................................................................................................................................................................................... 15 1 20 0.10 2 0 0 0 0 0 2 0 0 0
...................................................................................................................................................GAGTTAGACAGTTACGAATA................................................................................... 20 3 12 0.08 1 0 1 0 0 0 0 0 0 0
.....TGGAACCTCTTCATG...................................................................................................................................................................................................................................... 15 1 14 0.07 1 0 0 0 1 0 0 0 0 0
.........TCCTGTTCATGTTGACTTGG............................................................................................................................................................................................................................. 20 3 16 0.06 1 1 0 0 0 0 0 0 0 0
...................................................................................................................................................GAGTTAGACAGTTAGGTAT.................................................................................... 19 3 20 0.05 1 0 0 0 0 0 1 0 0 0
....................................................................................................................................................AGTTAGAAAGTTAGGAATAA.................................................................................. 20 3 20 0.05 1 1 0 0 0 0 0 0 0 0

Generated: 04/24/2015 at 04:44 AM