ID:

dsi_13222

 Coordinate:

2r:6081703-6081889 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-13.6 -12.9 -12.6

Flybase annnotation

five_prime_UTR [2r_6081685_6081702_-]; CDS [2r_6081584_6081684_-]; exon [2r_6081890_6081937_-]; five_prime_UTR [2r_6081890_6081937_-]; exon [2r_6081584_6081702_-]; intron [2r_6081703_6081889_-]

No Repeatable elements found

Sense Strand Reads

--################################################-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
CTGAAATATTTGTACACAATAAAAACCGGCTCGTTTTTTCGCTGAAAAAGGTATTAAACTGAAGTTAATGAACGCAAACGAAACAATCGGAGTAGTTAACCGACAAATAAGATGTTTAATCCCTTGTCGCATCTTGCTGAATACAAAAATAGCCCAGAAATCGCAATTTCCACGCCGCACCCATGACGTGTCACTCGCCCACTTCGTTCTAATCAATTAGTTTGTTTTTATCCATAGAACGTTACTCTCTGCAAAATGATCACCGACATGCAACTGGCCATTTTCTC
**************************************************************..((..((...((...............(((((.....((((((....(((.....)))..))))))....))))).............)).))..))******************************************************************************************************************************* 		Read size # Mismatch Hit Count Total Norm Total SRR553485
Chicharo_3 day-old ovaries
 M025
embryo
 SRR618934
dsim w501 ovaries
 SRR553488
RT_0-2 hours eggs
 M023
head
 M024
male body		 M053
female body
 SRR553487
NRT_0-2 hours eggs
 SRR902008
ovaries
 SRR902009
testis
 O001
Testis
 O002
Head
 SRR553486
Makindu_3 day-old ovaries
.........................................................................................................................................................................................................................................................TGCAAAATGATCACCGACATGCAACTGGC......... 29 0 1 4.00 4 1 0 0 0 0 0 0 2 0 0 0 0 1
..............................................................AGTTAATGAACGCAAACGAAA............................................................................................................................................................................................................ 21 0 1 2.00 2 0 0 0 2 0 0 0 0 0 0 0 0 0
...........................................................................AAACGAAACAATCGGAGTAGT............................................................................................................................................................................................... 21 0 1 2.00 2 0 0 1 0 0 1 0 0 0 0 0 0 0
.........................................................................................................................................................................................................................................................TGCAAAATGATCACCGACATGCAAC............. 25 0 1 2.00 2 1 0 1 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................................................................................AAATGATCACCGACATGCAACTGGC......... 25 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................................................................TGCAAAATGATCACCGACATG................. 21 0 1 1.00 1 0 0 0 0 0 0 0 0 0 1 0 0 0
................................................................................................................................................................................................................................................................TGATCACCGACATGCAATTGGCCATTTT... 28 1 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0 0 0
....................................................................................................................................................................................................................................................CTCTCTGCAAAATGATCACCGACATGC................ 27 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................TACGCCGCACCCATGACGTGTCAC............................................................................................. 24 1 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0
..............................................................................................................................................ACAAAAATAGCCCAGAAA............................................................................................................................... 18 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 1 0 0
................................................................................................................................................................................................................................................................TGATCACCGACATGCAACTGGCCA....... 24 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
........TTTGTACACAATAAAAACCGGCTCC.............................................................................................................................................................................................................................................................. 25 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0
.................................................................................AACAATCGGAGTAGTTAAC........................................................................................................................................................................................... 19 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................................................................................GATCACCGACATGCAACTGGCC........ 22 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................................................................TCTCTGCAAAATGATCACCGACATGC................ 26 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................................................................TTACTCTCTGCAAAATGATCACCGACAT.................. 28 0 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0 0 0
.......................................................AAACTGAAGTTAATGAACGCA................................................................................................................................................................................................................... 21 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 1 0
.........................................................................................................................................................................................................................................................TGCAAAATGATCACCGACATGCAACTGG.......... 28 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0
..........TGTACACAATAAAAACCG................................................................................................................................................................................................................................................................... 18 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0
...............ACAATAAAAACCGGCTCG.............................................................................................................................................................................................................................................................. 18 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0
..............................................................................CGAAACAATCGGAGGAGTTAACC.......................................................................................................................................................................................... 23 1 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0
.....................................................................................................................................................................................................................................................TCTCTGCAAGGTGATCACCGA..................... 21 2 2 0.50 1 0 0 1 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................TACAAAAATAGCCAAGAAATT............................................................................................................................. 21 2 2 0.50 1 0 0 0 0 0 0 0 0 0 1 0 0 0
...........................................................................................................................................ACTACAAAAATAGCCAAGA................................................................................................................................. 19 2 8 0.13 1 1 0 0 0 0 0 0 0 0 0 0 0 0
.......................................CGCTGAAAAAGTTATAAA...................................................................................................................................................................................................................................... 18 2 20 0.05 1 0 0 0 1 0 0 0 0 0 0 0 0 0
........................TCCGGCTCGTTTTTT........................................................................................................................................................................................................................................................ 15 1 20 0.05 1 0 0 0 1 0 0 0 0 0 0 0 0 0

Anti-sense strand reads

GACTTTATAAACATGTGTTATTTTTGGCCGAGCAAAAAAGCGACTTTTTCCATAATTTGACTTCAATTACTTGCGTTTGCTTTGTTAGCCTCATCAATTGGCTGTTTATTCTACAAATTAGGGAACAGCGTAGAACGACTTATGTTTTTATCGGGTCTTTAGCGTTAAAGGTGCGGCGTGGGTACTGCACAGTGAGCGGGTGAAGCAAGATTAGTTAATCAAACAAAAATAGGTATCTTGCAATGAGAGACGTTTTACTAGTGGCTGTACGTTGACCGGTAAAAGAG
*******************************************************************************************************************************..((..((...((...............(((((.....((((((....(((.....)))..))))))....))))).............)).))..))************************************************************** 		Read size # Mismatch Hit Count Total Norm Total O001
Testis
 SRR902009
testis
 SRR553487
NRT_0-2 hours eggs
 SRR553485
Chicharo_3 day-old ovaries
 SRR553486
Makindu_3 day-old ovaries
 SRR618934
dsim w501 ovaries
 SRR553488
RT_0-2 hours eggs
 GSM343915
embryo
 M025
embryo
.............................................................................................................................................................................................................................................CTGCCATGAGAGACGTTTTA.............................. 20 2 1 1.00 1 0 0 0 0 0 1 0 0 0
..................................................................................................................................................................................................................................................ATGAGAGACGTTTTACTA........................... 18 0 1 1.00 1 1 0 0 0 0 0 0 0 0
...........................................................................................................................AACAGCGTAGAACGACTTA................................................................................................................................................. 19 0 1 1.00 1 1 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................AGCGGGTGAAGCAAGATTAGT........................................................................ 21 0 1 1.00 1 0 0 0 0 1 0 0 0 0
......................................................................................................................................................................................TACTGCACAGTGAGCGGGTGA.................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................................................................................TTACTAGTGGCAGGACG................ 17 2 10 1.00 10 0 0 0 2 1 7 0 0 0
................................................................................................................................................................................................TGAGCGGGTGAAGCAAGATTA.......................................................................... 21 0 1 1.00 1 0 0 1 0 0 0 0 0 0
....................................................................................................................................................................................................CGGGTGAAGCAAGATTAGTTA...................................................................... 21 0 1 1.00 1 0 0 0 0 0 0 1 0 0
....................................................................................................................................................................................GGTACTGCACAATGAGCA......................................................................................... 18 2 1 1.00 1 0 0 1 0 0 0 0 0 0
.........................................................................................................................................................................................................................................................ACGTTTTACTAGTGGCTGTAC................. 21 0 1 1.00 1 0 0 0 1 0 0 0 0 0
...................................................................................................................................................................................................................TAGTTAATCAAACAAAAATAG....................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0
................................................................................................TTTGGCTGTTTATTCTACAAAT......................................................................................................................................................................... 22 1 1 1.00 1 0 1 0 0 0 0 0 0 0
.............................................................................................................................................................................................CAGTGAGCGGGTGAAGCAAGA............................................................................. 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0
................................................................................................................................................................................................................................................................ACTAGTGGCTGTACGTTAAC........... 20 1 1 1.00 1 0 1 0 0 0 0 0 0 0
........................................................................................................................................GGCTTATGTTTTTATCGG..................................................................................................................................... 18 1 2 0.50 1 0 0 0 0 0 0 0 1 0
.............................................................................................................................................ATGTTTTTATCGGTTCTTTAA............................................................................................................................. 21 2 2 0.50 1 0 0 0 1 0 0 0 0 0
..................................................................................................................................................................................................AGCGGGTGAAGCGAGGTTA.......................................................................... 19 2 2 0.50 1 0 1 0 0 0 0 0 0 0
.............................................................................................................................................................................................................................AAAAAAAATAGGTATCTT................................................ 18 1 3 0.33 1 0 0 0 0 1 0 0 0 0
..........................................................................................................................................ATGATGTTTTTATCGGTTCTTT............................................................................................................................... 22 3 4 0.25 1 0 0 1 0 0 0 0 0 0
.............................................................................................................................................................................................................................................................TTTACTAGTGGCAGGACG................ 18 2 4 0.25 1 0 0 0 0 0 0 0 0 1
.........................................................................................................................................................................................................................................................AGGTTTTGCTTGTGGCTGTAC................. 21 3 4 0.25 1 0 0 0 0 1 0 0 0 0
................................................................................................................................................................................................................................................................ACTAGTGGCAGTACG................ 15 1 10 0.20 2 0 0 0 2 0 0 0 0 0
..................................................................................................................................................................................................................................................ATGAGAGACGTTTTA.............................. 15 0 6 0.17 1 0 0 0 0 1 0 0 0 0
...............................................................................................................................................................................................................................................................TACTAGTGGCAGGACGTTA............. 19 3 12 0.08 1 0 0 0 0 0 1 0 0 0
......................................................................TTGCGTTTGCTTATTTAGGC..................................................................................................................................................................................................... 20 3 16 0.06 1 0 0 0 1 0 0 0 0 0
...............................................................................................................................................................................................................................................................TACTAGTGGCAGTACGA............... 17 2 20 0.05 1 0 0 0 0 0 1 0 0 0
......................................................................................................................................................................................................GCTGAAGCAAGGTTAGTA....................................................................... 18 3 20 0.05 1 0 0 0 0 0 0 1 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim2 2r:6081653-6081939 - dsi_13222 CTGAAATATTTG-TACAC---AATAAAAACCGGCTCGT--------TTTTTCGCT-G--AA-AAAGGTATTA---AACTGAAGTTAATGAAC--GCAAACGAAACAATCGGAGTAGTTAACCGACAA-A---------------------------T---AAGATG-TTTAATCCCTTGTCGCAT---CTTGCTGA-ATA-CAAAAATAGCC--CAG--AAAT----------CGCAATTTCCAC-GCCGCACCCATGACGTGTCACTC------GCCCAC---TT-CGTTCTAA---------------TCAATTAGTT--TG--T-TT-------------T-TATCC-----ATAG--AACGTT--ACT-CTCTGC--AAAATGATCACCGACATGCAACTGGCCATTTTCTC
droSec2 scaffold_1:2909740-2910028 - CTGAAATATTTG-TACAC---AATAGAAACCGGCTCGT--------TTTTTCGCT-G--AA-AAAGGTATTA---AACTGAAGTTAATGAAC--GCAAACGAAACAATCGGAGTAGTTAACCGACAA-A---------------------------T---AAGATG-TTTAATCCCTTGTCGCAT---CTTGCTGA-ATA-CGAAAATAGCC--CAG--AAAT----------CGCGATTTCCAC-GCCGCACCCATGACGTGTCACTC------GCCCAC---TT-CGTTCTAA---------------TCAATTAGTT--TG--T-TT-------------T-TATCC-----ATAG--AACTCCATACT-CTCTGC--AAAATGATCACCGACATGCAACTGGCCATTTTCTC
dm3 chr2R:5287522-5287811 - CTGAAATATTTG-TACAC---AATAAAAACCGGCTCGT--------TTTTTCGCT-G--AA-AAAGGTAATA---AACTAAAGTTAATGAAC--GCAAACGAAACAATCGGTGAAGTTAATCGACAA-A---------------------------T---GAGATG-CATAATCCCGCGTTGCAT---TTTGGTGG-ATA-CAGAAATAGGC--CAG--AAAT----------CGCGATTTCCAC-ACCGCACCCATGACGTGTCACTC------GCCCAC---TTCGTTTCTAA---------------TCAATTAGTT--TG--T-TT-------------T-TATCC-----ATAG--AACGTGTTACT-GTCTGC--AAAATGATCACCGACGTGCAATTGGCCATTTTCTC
droEre2 scaffold_4929:17377630-17377915 + CTGCAGTATTTG-TACAC---AATAAAAACCGGCTCGT--------TTTTTCGCT-G--AA-AAAGGTAATA---AACTTAAGTTGAATCAG--GCAAAAGTAACAATTAGAGTAGTTGACTGACAA-A---------------------------G---AAGAAG-TTTAATCTCACCTCGAGT---CTTGGCTAAGA--CAGGAATG-AC--CAG--AAAT----------CGCGATATCCGC-ACCGCACCCATGACGTGTCACTC------GCCCAC---TT-CGTTCTAA---------------TCAATTACTT--TG--T-TT-------------T-TAACC-----ATAG--GACGTTT--CT-CTCTCC--AAAATGATCACCGACGTGCAATTGGCCATTTTCTC
droYak3 2L:17934871-17935155 - CTGAAGTATTTG-TACAC---AATAAAAACCGGCTTGT--------TTTTTCGCT-G--AA-AAAGGTAATA---TACTTAACTAAAAGAAG--GCAAAAGGAAGAATCGGAGTAGTGGACTCACAA-A---------------------------T---AAGAAG-TTTAATCCAGCGTCGCAA---AGTGGTAAAAA--GAGGAATT-GC--CTT--AAAT----------AGCGATTTCTAC-ACCGCACCCATGACGTGTCACTC------GCCCAC---TT-CGTTCTAA---------------TCAATTACTT---G--C-TT-------------T-TGACT-----ATAG--GACTTTT--CT-CTCTGC--AAAATGATCAGCGACGTGCAATTGGCCATTTTCTC
droEug1 scf7180000409183:916618-916899 - TTGAAATATTTG-TACAC---AATAAAAACCGGCTCGT--------TTTTTCGCT-G--AA-AAAGGTATAA---TACTTAAATTAAAATAG--ACAAAGGAATCAAATTGAGTAGTTTAAGGACGA-A---------------------------G---AAAAAG-TTCCATCTTTTAGAGAAT---GACATTTAACAGC--AGAACT-CT--CAG--ATGT----------TATGGTTTCCGC-CCTGCACACATGACGTGTCACTC------GCCCAC---TT-GATTCTAA---------------TCAATTAATACATG--T-AT-------------T-TATCC-----ATAG--ATTG---------TTTCC--AAAATGATCACCGACGTGCAATTGGCTATCTTCTC
droBia1 scf7180000301506:1433076-1433349 + CTTAAATATTTG-TACAC---AATAAAAACCGGCTCGT--------TTTTTCGCT-G--AA-AAAGGTAAAA---TACTTGAATTAAAACCG--GCAAAAGGAGCAATTTGAGTAGTTCCTAGCCAC-C---------------------------G---AAGAAG-GCCCATCTTCCTCTGGTC---CTTCATTGAAAGC--GGAACT-AC--CAG--AAAT----------ATTGGTTTCCGG-CCCGCACCCATGACGTGTCATTC------GACCAC---TT-AGTTCTAA---------------TGGATTACAA--TC--T-TT-------------A-T-----------AG----------GCA-TTCTCC--AAAATGATCACCGACGTGCAATTGGCCATTTTCTC
droTak1 scf7180000415401:320045-320334 - CTGAAATATTTG-TACAC---AATAAAAACCGGCTCGT--------TTTTTCGCT-G--AA-AAAGGTAAAA---TAATTGAATTAAAGTAG--GCAAAAGGGACAATTTGAGTGGTTGAATAACCA-C---------------------------A---AGGAAG-TTCTACTTTGCGCTGTAA---CATTTTAGAGAGC--AGAATT-AA--CAG--AAAT----------AACTGTTTC------CGCACCCATGACGTGTCACTC------GCCCAC---TGGGGTTCTAA---------------TCAAGTAATT--TG--T-TT-------------TTTATCCGCAGAATAG--ACCATTTGACA-TTCTGC--AAAATGATCACCGACGTGCAATTGGCCATTTTCTC
droEle1 scf7180000491201:1105458-1105736 - CTGAAATATTTG-TACAC---AACAGAAACCGGCTCGT--------TTTTTCGCT-A--AA-AAAGGTAAAT---TACTTGAAATTAAGAAG--ACAAATGAAATTATTTGAGTATGTAAGTGATAG-T---------------------------C---GAGGAG-TTTCATGTTTCCTTGCCA---CTTAATTTTCAGC--TGAATA-AG--CAG-GAAAT----------AAAGTATTCTGC-CCTGCACACATGACGTGTCACTC------GCCCAC---TT-GCTTCTAA---------------TCAATTAGTT--TG--GTTTTCAC-----------------------AG--AACTTTT--------GAC--AAAATGATCACCGACGTGCAATTGGCCATTTTCTC
droRho1 scf7180000780118:28209-28487 + CTAAAATATTTG-TACAC---AATAAAAACCGGCTCGT--------TTTTTCGCT-G--AA-AAAGGTAAAT---TACTTGAATAAAACTAG--AGAAATAAAATAATTTCGGTATATAAATGATAA-A---------------------------G---GAGGAACTTATACTTCGC-CCATCA---CTTATTTCAAAGC--GGAAAA-CC--CAG--GATTA--------ACCAGGTTTCCGC-CCCGCACCCATGACGTGTCACTC------GCGCAC---TT-GCTTCTAA---------------TCAATTAATT--TG--T-TTTCAC-----------------------AG--AACTTTT--------GAC--AAAATGATCACCGACGTGCAATTGGCCATTTTCTC
droFic1 scf7180000453851:991641-991925 + CTGAAATATTTG-TACAC---AATAAAAACCGGCTCGT--------TTTTTCGCT-G--AA-AAAGGTAACG---TTTTTGTATTAAGCTAG--GCAAATTAGCCTATTTAAGTAACCAAAATATCA-T---------------------------A---AAGAAG-TTCCACCTCTCCTGGTAA---CTTATTTAGGAGC--AAAGAATGA----GGAATAC----------AACGGTTTCCGC-CCTGCACCCATGACGTGTCACTC------GCCTAT---GT-GATTCTAA---------------TCAATCAATT--TG--T-TTTTAT-----------------------AG--AACTCTTCGCG-TTTTCC--ATAATGATCACCGACGTGCAATTGGCAATTTTCTC
droKik1 scf7180000302470:2063761-2064055 - CTAGAATATTTG-TACAC---AACATAAACCGGCTCGT-TGCTCGATTTTTCGCC-G--AAAAAAGGTTAAT---TACTTGAATTAAACTAAACACAAACTAAATTC--TTAAC--TCGGATAACC--C---------------------------AAGGCAGATG-TTGCACCTTTCCTTGCAA---CTAGTATA-GAA-CTTAGATT-AC--CAG--AAATC---------AGCGATTTCCGC-ACCGCACCCATGACGTGTCACTCTC----GCCCACCAAAG-CGTTCTAA---------------TCAATTAATT---GTGT-TT-------------TT----C-------AGAGA--TT-T--AAGC-CCTA--GAAATGATTACCGACGTGCAATTGGCCATTTTCTC
droAna3 scaffold_13266:8295633-8295909 + TTGTAATACTTGCTACAC---AACAAAAACCGGCTCGT--------TTTTTCTCT-T--AAAAAAGGTAAAT---TACTAGAGTTAAACTAA--ATAAAACTAACG-TTTGTATAGCTATGCTACCATT---------------------------G---GAATAA-ATGCATTCAGACTTATCA---GTTAA------AC--GGCA---GC--CAA--ATTTC--------AGCCGTTTACCATTCGAGCATCCATGACGTGTCACTC------GCCAA-----T-TGTTCTAA---------------TCAACTT-TT--CG--T-GTTTAC-----------------------AG--AT-TCTTGGCA-T--TCCAAACTATGATCACCGACGTGCAATTGGCCATTTTCTC
droBip1 scf7180000396759:521011-521285 - TTGTAATACTTGCAACAC---AA---CAACCGGCTCGC--------TTTTTTCTTTAATAA-AAAGGTAAAT---TACTAAAGATAAATTAA--ATAAAACACCC-ACTTGGATAGCTAAGTTAACTCA---------------------------G---GAATAA-TTTCATTCAGACCTACCA---GTTA-------AC--GGCT---ACCCTAG--GTCT----------TTAGTTTACCATTCGCGCATCCATGACGTGTCACTC------CCCAA-----T-TGTTCTAA---------------TCAACTT-TT--CG--T-GTTTAC-----------------------AG--AT-TTTTGGCA-T--TCCAAAATATGATTACCGACGTGCAATTGGCTATTTTCTC
dp5 3:9338340-9338607 - ----------------------ACAAAACCCGGCCGCTTCACTCG-TTTTTCGCC-GACAA-AAAGGTAAAA----AC-TAACTTAAAT-------AAACCAAATTTCTTGTAT--------TAACTAGTGAAT----------------------A---GTGTTA--GCCACGACCCCTTGCAACATATTTAC-CAAAAG--ACTTTC-CC--GAG--AACTTATCAAATT-AGATGTT------TCCGCATCCATGACGTGTCACTG------TTGATA---GG-CGTTCTCA---------------TCAATT--TT--CG--T-GTTTACAACATTTCTTT----------------------C----A-GAATC--AAAATGATTACCGACGTGCAATTGGCGATTTTCTC
droPer2 scaffold_4:4661557-4661664 - C-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CGCATCCATGACGTGTCACTG------TTGATA---GG-CGTTCTCA---------------TCAATT--TT--CG--T-GTTTACAACATTTCTTT----------------------C----A-GAATC--AAAATGATTACCGACGTGCAATTGGCGATTTTCTC
droWil2 scf2_1100000004510:730793-730897 + --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CATGACGTGTCACTT------CCTTGG---AT-TTGTGTAT---------------TTAAACAAAA--T---T-TC-------------T-TGATT-----TTAG--AAGTATT--CC-CACACC--AAAATGATAACGGACGTGCAATTGGCAATTTTCTC
droVir3 scaffold_12823:462236-462353 - A------ATTTA-TACAC---GGC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------C-TCTTGACACATGACGTGTCACCA------GC-----------GTTCTGAAAAATAC--------TAATTTTC----TT--T-TT--TT-----------------------AG--AGGTT-C----A-GCACC--AAAATGATCACCGACGTGCAGTTAGCCATCTTTTC
droMoj3 scaffold_6496:277661-277696 - ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------C--AAAATGATAACTGACGTGCAATTGGCAATTTTCTC
droGri2 scaffold_15245:6195139-6195417 + A-----TATCAG-CACGCCTAAACAAAAACCGGCTTGT--------TTTTTCGCA-G--AA-AAAGGTAAATATTTCCTTCAGTTAATGCGC---------------TTAGAGCCTTTGGC-GACCA-A-----CACTACATACCAAATGTAACCCA----------TTTCACTTTATGCTGGAC---TTTTAT--------CGATTTATGT----TGAAAGC----------ACTG------GC-ATTTAACACATGACGTGTCACCAGTTCTAATACAA---AT-TCTGCTGA---TCGCTGATTTTTTC----------TG--A-TT-------------T-T-----------AT--GTGTA-C----A-GTATC--AAAATGATTACCGACGTGCAATTGGCAATATTTTC

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
CTGAAATATTTG-TACAC---AATAAAAACCGGCTCGT--------TTTTTCGCT-G--AA-AAAGGTATTA---AACTGAAGTTAATGAAC--GCAAACGAAACAATCGGAGTAGTTAACCGACAA-A---------------------------T---AAGATG-TTTAATCCCTTGTCGCAT---CTTGCTGA-ATA-CAAAAATAGCC--CAG--AAAT----------CGCAATTTCCAC-GCCGCACCCATGACGTGTCACTC------GCCCAC---TT-CGTTCTAA---------------TCAATTAGTT--TG--T-TT-------------T-TATCC-----ATAG--AACGTT--ACT-CTCTGC--AAAATGATCACCGACATGCAACTGGCCATTTTCTCSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
........................................................................................................................................................................................................................................................................................................................................................................................TGC--AAAATGATCACCGACATGCAACTGGC.........2914.00400000011200000000
.................................................................................AGTTAATGAAC--GCAAACGAAA........................................................................................................................................................................................................................................................................................................................2112.00200000000020000000
................................................................................................AAACGAAACAATCGGAGTAGT...........................................................................................................................................................................................................................................................................................................2112.00201000000001000000
........................................................................................................................................................................................................................................................................................................................................................................................TGC--AAAATGATCACCGACATGCAAC.............2512.00200000010001000000
..............................................................................................................................................................................................................................................................................................................................................................................................AAATGATCACCGACATGCAACTGGC.........2511.00100000010000000000
........................................................................................................................................................................................................................................................................................................................................................................................TGC--AAAATGATCACCGACATG.................2111.00100000000000001000
..................................................................................................................................................................................................................................................................................................................................................................................CT-CTCTGC--AAAATGATCACCGACATGC................2711.00100100000000000000
.......................................................................................................................................................................................................A-CAAAAATAGCC--CAG--AAA..................................................................................................................................................................................................1811.00100001000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................TGATCACCGACATGCAACTGGCCA.......2411.00100000010000000000
........TTTG-TACAC---AATAAAAACCGGCTCC...........................................................................................................................................................................................................................................................................................................................................................................................2511.00100100000000000000
......................................................................................................AACAATCGGAGTAGTTAAC.......................................................................................................................................................................................................................................................................................................1911.00100100000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................GATCACCGACATGCAACTGGCC........2211.00100100000000000000
...................................................................................................................................................................................................................................................................................................................................................................................T-CTCTGC--AAAATGATCACCGACATGC................2611.00100000010000000000
.............................................................................................................................................................................................................................................................................................................................................................................TT--ACT-CTCTGC--AAAATGATCACCGACAT..................2811.00100000000000010000
.......................................................................A---AACTGAAGTTAATGAAC--GCA...............................................................................................................................................................................................................................................................................................................................2111.00100000100000000000
........................................................................................................................................................................................................................................................................................................................................................................................TGC--AAAATGATCACCGACATGCAACTGG..........2811.00100010000000000000
..........TG-TACAC---AATAAAAACCG................................................................................................................................................................................................................................................................................................................................................................................................1811.00110000000000000000
................AC---AATAAAAACCGGCTCG...........................................................................................................................................................................................................................................................................................................................................................................................1811.00110000000000000000
droSec2
CTGAAATATTTG-TACAC---AATAGAAACCGGCTCGT--------TTTTTCGCT-G--AA-AAAGGTATTA---AACTGAAGTTAATGAAC--GCAAACGAAACAATCGGAGTAGTTAACCGACAA-A---------------------------T---AAGATG-TTTAATCCCTTGTCGCAT---CTTGCTGA-ATA-CGAAAATAGCC--CAG--AAAT----------CGCGATTTCCAC-GCCGCACCCATGACGTGTCACTC------GCCCAC---TT-CGTTCTAA---------------TCAATTAGTT--TG--T-TT-------------T-TATCC-----ATAG--AACTCCATACT-CTCTGC--AAAATGATCACCGACATGCAACTGGCCATTTTCTCSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
.................................................................................................................................................................................................................................................................................................................................................................................ACT-CTCTGC--AAAATGATCACCGACA...................2511.0011000
...............................................................................................................................................................................................................................................................................................................................................................................ATACT-CTCTGC--AAAATGATCACC.......................2311.0011000
.........................................................................................................................................................................................................CGAAAATAGCC--CAG--AAAT----------CGCGAT.................................................................................................................................................................................2411.0010100
.......ATTTG-TACAC---AATAGAAACCGGCTC............................................................................................................................................................................................................................................................................................................................................................................................2511.0011000
...............CAC---AATAGAAACCGGCTCGT--------..................................................................................................................................................................................................................................................................................................................................................................................2011.0010100
.............TACAC---AATAGAAACCGGCTCGT--------TTTT..............................................................................................................................................................................................................................................................................................................................................................................2611.0010001
...............CAC---AATAGAAACCGGCTCGT--------T.................................................................................................................................................................................................................................................................................................................................................................................2111.0010010
......................................................................................................................................................................................................................................................................................................................................................................G--AACTCCATACT-CTCTGC--AAAAT..............................2311.0011000
dm3
CTGAAATATTTG-TACAC---AATAAAAACCGGCTCGT--------TTTTTCGCT-G--AA-AAAGGTAATA---AACTAAAGTTAATGAAC--GCAAACGAAACAATCGGTGAAGTTAATCGACAA-A---------------------------T---GAGATG-CATAATCCCGCGTTGCAT---TTTGGTGG-ATA-CAGAAATAGGC--CAG--AAAT----------CGCGATTTCCAC-ACCGCACCCATGACGTGTCACTC------GCCCAC---TTCGTTTCTAA---------------TCAATTAGTT--TG--T-TT-------------T-TATCC-----ATAG--AACGTGTTACT-GTCTGC--AAAATGATCACCGACGTGCAATTGGCCATTTTCTCSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
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.....................................................................................................................................................................................................................................................................................................................................................................................................CACCGACGTGCAATTGGCC........1919.0090000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000090000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
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...............................................................................................................................................................................................................................................................................................................................................................................................AATGATCACCGACGTGCAATTGGC.........2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000
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................................................................................................AAACGAAACAATCGGTGA..............................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................AATGAAC--GCAAACGAAACAA.....................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000
...........................................................................................................................................................................ATCCCGCGTTGCAT---TTTGGTGG-A..........................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100
..............................................................................................................................................................................CCGCGTTGCAT---TTTGGTGG-AT.........................................................................................................................................................................................................................2111.0010000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................AATAAAAACCGGCTCGT--------TTTG..............................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................GTCACTC------GCCCAC---TTCGTTTC............................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................TT-------------T-TATCC-----ATAG--AACGTGTT...............................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................TCTGC--AAAATGATCACCGACGC..................2211.0010000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................AACCGGCTCGT--------TTTTTCGCT-G--.....................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................GC--AAAATGATCACCGACGTG.................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000
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.............................................................................................................................................................................................................................................ATTTCCAC-ACCGCACCCATGA.............................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................TCCCGCGTTGCAT---TTTGGTGG-...........................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000
.....................................................................................................AAACAATCGGTGAAGTTA.........................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................C--AAAATGATCACCGACGTGCAAT.............2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................ATA-CAGAAATAGGC--CAG--AAAT----------.......................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
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.............................................................................................................................................................................................................................................................................................................................................................................................AAAATGATCACCGACGTGCAAT.............2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
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....................................................................................................................................................................................................................................................................................................................................................................................................TCACCGACGTGCAATTGGCCATTTTC..2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................ATGATCACCGACGTGCAATTGG..........2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................TCGCT-G--AA-AAAGGTAATA---AACTAAAG.............................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................ACT-GTCTGC--AAAATGATCACCGACG...................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................AATA---AACTAAAGTTAATGAAC--GCAAAC............................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
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..........................................................................................................................................................................................................................................................................................................................................................................................C--AAAATGATCACCGACGTGCAATTGGC.........2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
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..........................................................................................................................................................................................................AGAAATAGGC--CAG--AAAT----------CGCG...................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000
............................................................................ACTAAAGTTAATGAAC--GC................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................AATGATCACCGACGTGCAATTGGCCA.......2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................AAATGATCACCGACGTGCAAT.............2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000
...........................................................................................................................................................................ATCCCGCGTTGCAT---TTTGGTG.............................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................T---TTTGGTGG-ATA-CAGAAATAGGC--CAG--A....................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000
..........................................................................................................................GACAA-A---------------------------T---GAGATG-CATAA....................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................AAATGATCACCGACGTGCAATTGG..........2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
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........................................................................................................................................................................................................................................................................................................................................................................................TGC--AAAATGATCACCGACGTGCAATT............2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000
...........................AACCGGCTCGT--------TTTTTCGCT-........................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................AAATGATCACCGACGTGCAATTGGCCA.......2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
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..............................................................................................................................................................................................................................................................................................................................................................................................AAATGATCACCGACGTGCA...............1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000
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.....................................................................................................................................................................................................................................................................................................................................................................................................CACCGACGTGCAATTGGCCATT.....2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................GTTAATGAAC--GCAAACGA..........................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................CTGC--AAAATGATCACCGACGTG.................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
..........TG-TACAC---AATAAAAACCGG...............................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................AAATGATCACCGACGTGCAATTGGCC........2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000
........TTTG-TACAC---AATAAAAACCGG...............................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................TTCCAC-ACCGCACCCATGACGTGTC.......................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000
................................GCTCGT--------TTTTTCGCT-G--AA-AA................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................CGCT-G--AA-AAAGGTAATA---AACTAAAG.............................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000
...............CAC---AATAAAAACCGGCTCGT--------TTTTT.............................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................ATGATCACCGACGTGCAA..............1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................AAATGATCACCGACGTAA................1830.3310000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droEre2
CTGCAGTATTTG-TACAC---AATAAAAACCGGCTCGT--------TTTTTCGCT-G--AA-AAAGGTAATA---AACTTAAGTTGAATCAG--GCAAAAGTAACAATTAGAGTAGTTGACTGACAA-A---------------------------G---AAGAAG-TTTAATCTCACCTCGAGT---CTTGGCTAAGA--CAGGAATG-AC--CAG--AAAT----------CGCGATATCCGC-ACCGCACCCATGACGTGTCACTC------GCCCAC---TT-CGTTCTAA---------------TCAATTACTT--TG--T-TT-------------T-TAACC-----ATAG--GACGTTT--CT-CTCTCC--AAAATGATCACCGACGTGCAATTGGCCATTTTCTCSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
...........................AACCGGCTCGT--------TTTTTCGCT-........................................................................................................................................................................................................................................................................................................................................................................2011.0011000000
................................................................................................................................................................................................................................................................................................................................................................................................ATGATCACCGACGTGCAATTGGCCATTT....2811.0011000000
.....................................................................................................................................................................................................................................................................................................................................................................................CTCTCC--AAAATGATCACCGACG...................2211.0011000000
..............ACAC---AATAAAAACCGGCTC............................................................................................................................................................................................................................................................................................................................................................................................1911.0010100000
droYak3
CTGAAGTATTTG-TACAC---AATAAAAACCGGCTTGT--------TTTTTCGCT-G--AA-AAAGGTAATA---TACTTAACTAAAAGAAG--GCAAAAGGAAGAATCGGAGTAGTGGACTCACAA-A---------------------------T---AAGAAG-TTTAATCCAGCGTCGCAA---AGTGGTAAAAA--GAGGAATT-GC--CTT--AAAT----------AGCGATTTCTAC-ACCGCACCCATGACGTGTCACTC------GCCCAC---TT-CGTTCTAA---------------TCAATTACTT---G--C-TT-------------T-TGACT-----ATAG--GACTTTT--CT-CTCTGC--AAAATGATCAGCGACGTGCAATTGGCCATTTTCTCSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
..............................................................................................................................................................................................................ATT-GC--CTT--AAAT----------AGCGATTTCTAC-ACC.......................................................................................................................................................................2711.00101000000000
.............................................................................................................................................................................................................................................................................................................................................................................TTT--CT-CTCTGC--AAAATGATCAGCGACGTGC................3011.00100000010000
.............................................................................................................................................................................................................................................................................................................................................................................................AAAATGATCAGCGACGTGC................1911.00100000010000
..................................................................................................................................................................................................................................................................................................................................................................................................GATCAGCGACGTGCAATTGGCCAT......2411.00101000000000
...................................................................................................................................................................................................................................................................................................................................................................................................ATCAGCGACGTGCAATTGGCC........2111.00101000000000
...............................................................................................................................................................................................................................................................................................................................................................................................AATGATCAGCGACGTGCAATTG...........2211.00100000010000
.....................AATAAAAACCGGCTTGT--------TT................................................................................................................................................................................................................................................................................................................................................................................1911.00100000010000
......TATTTG-TACAC---AATAAAAACCGGCTTG...........................................................................................................................................................................................................................................................................................................................................................................................2711.00100000010000
droEug1
TTGAAATATTTG-TACAC---AATAAAAACCGGCTCGT--------TTTTTCGCT-G--AA-AAAGGTATAA---TACTTAAATTAAAATAG--ACAAAGGAATCAAATTGAGTAGTTTAAGGACGA-A---------------------------G---AAAAAG-TTCCATCTTTTAGAGAAT---GACATTTAACAGC--AGAACT-CT--CAG--ATGT----------TATGGTTTCCGC-CCTGCACACATGACGTGTCACTC------GCCCAC---TT-GATTCTAA---------------TCAATTAATACATG--T-AT-------------T-TATCC-----ATAG--ATTG---------TTTCC--AAAATGATCACCGACGTGCAATTGGCTATCTTCTCSizeHit CountTotal NormTotal
No Reads
droBia1
CTTAAATATTTG-TACAC---AATAAAAACCGGCTCGT--------TTTTTCGCT-G--AA-AAAGGTAAAA---TACTTGAATTAAAACCG--GCAAAAGGAGCAATTTGAGTAGTTCCTAGCCAC-C---------------------------G---AAGAAG-GCCCATCTTCCTCTGGTC---CTTCATTGAAAGC--GGAACT-AC--CAG--AAAT----------ATTGGTTTCCGG-CCCGCACCCATGACGTGTCATTC------GACCAC---TT-AGTTCTAA---------------TGGATTACAA--TC--T-TT-------------A-T-----------AG----------GCA-TTCTCC--AAAATGATCACCGACGTGCAATTGGCCATTTTCTCSizeHit CountTotal NormTotal
No Reads
droTak1
CTGAAATATTTG-TACAC---AATAAAAACCGGCTCGT--------TTTTTCGCT-G--AA-AAAGGTAAAA---TAATTGAATTAAAGTAG--GCAAAAGGGACAATTTGAGTGGTTGAATAACCA-C---------------------------A---AGGAAG-TTCTACTTTGCGCTGTAA---CATTTTAGAGAGC--AGAATT-AA--CAG--AAAT----------AACTGTTTC------CGCACCCATGACGTGTCACTC------GCCCAC---TGGGGTTCTAA---------------TCAAGTAATT--TG--T-TT-------------TTTATCCGCAGAATAG--ACCATTTGACA-TTCTGC--AAAATGATCACCGACGTGCAATTGGCCATTTTCTCSizeHit CountTotal NormTotal
No Reads
droEle1
CTGAAATATTTG-TACAC---AACAGAAACCGGCTCGT--------TTTTTCGCT-A--AA-AAAGGTAAAT---TACTTGAAATTAAGAAG--ACAAATGAAATTATTTGAGTATGTAAGTGATAG-T---------------------------C---GAGGAG-TTTCATGTTTCCTTGCCA---CTTAATTTTCAGC--TGAATA-AG--CAG-GAAAT----------AAAGTATTCTGC-CCTGCACACATGACGTGTCACTC------GCCCAC---TT-GCTTCTAA---------------TCAATTAGTT--TG--GTTTTCAC-----------------------AG--AACTTTT--------GAC--AAAATGATCACCGACGTGCAATTGGCCATTTTCTCSizeHit CountTotal NormTotal
No Reads
droRho1
CTAAAATATTTG-TACAC---AATAAAAACCGGCTCGT--------TTTTTCGCT-G--AA-AAAGGTAAAT---TACTTGAATAAAACTAG--AGAAATAAAATAATTTCGGTATATAAATGATAA-A---------------------------G---GAGGAACTTATACTTCGC-CCATCA---CTTATTTCAAAGC--GGAAAA-CC--CAG--GATTA--------ACCAGGTTTCCGC-CCCGCACCCATGACGTGTCACTC------GCGCAC---TT-GCTTCTAA---------------TCAATTAATT--TG--T-TTTCAC-----------------------AG--AACTTTT--------GAC--AAAATGATCACCGACGTGCAATTGGCCATTTTCTCSizeHit CountTotal NormTotal
No Reads
droFic1
CTGAAATATTTG-TACAC---AATAAAAACCGGCTCGT--------TTTTTCGCT-G--AA-AAAGGTAACG---TTTTTGTATTAAGCTAG--GCAAATTAGCCTATTTAAGTAACCAAAATATCA-T---------------------------A---AAGAAG-TTCCACCTCTCCTGGTAA---CTTATTTAGGAGC--AAAGAATGA----GGAATAC----------AACGGTTTCCGC-CCTGCACCCATGACGTGTCACTC------GCCTAT---GT-GATTCTAA---------------TCAATCAATT--TG--T-TTTTAT-----------------------AG--AACTCTTCGCG-TTTTCC--ATAATGATCACCGACGTGCAATTGGCAATTTTCTCSizeHit CountTotal NormTotal
No Reads
droKik1
CTAGAATATTTG-TACAC---AACATAAACCGGCTCGT-TGCTCGATTTTTCGCC-G--AAAAAAGGTTAAT---TACTTGAATTAAACTAAACACAAACTAAATTC--TTAAC--TCGGATAACC--C---------------------------AAGGCAGATG-TTGCACCTTTCCTTGCAA---CTAGTATA-GAA-CTTAGATT-AC--CAG--AAATC---------AGCGATTTCCGC-ACCGCACCCATGACGTGTCACTCTC----GCCCACCAAAG-CGTTCTAA---------------TCAATTAATT---GTGT-TT-------------TT----C-------AGAGA--TT-T--AAGC-CCTA--GAAATGATTACCGACGTGCAATTGGCCATTTTCTCSizeHit CountTotal NormTotal
No Reads
droAna3
TTGTAATACTTGCTACAC---AACAAAAACCGGCTCGT--------TTTTTCTCT-T--AAAAAAGGTAAAT---TACTAGAGTTAAACTAA--ATAAAACTAACG-TTTGTATAGCTATGCTACCATT---------------------------G---GAATAA-ATGCATTCAGACTTATCA---GTTAA------AC--GGCA---GC--CAA--ATTTC--------AGCCGTTTACCATTCGAGCATCCATGACGTGTCACTC------GCCAA-----T-TGTTCTAA---------------TCAACTT-TT--CG--T-GTTTAC-----------------------AG--AT-TCTTGGCA-T--TCCAAACTATGATCACCGACGTGCAATTGGCCATTTTCTCSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
...................................................................................................................................................................................................................................................................................................................................................................................A-T--TCCAAACTATGATCACCGAC....................2211.001010000
......................................................................................................................................................................................................................................................................................................................................................................G--AT-TCTTGGCA-T--TCCAAACTATGAT...........................2511.001010000
.............TACAC---AACAAAAACCGGCTCGT--------T.................................................................................................................................................................................................................................................................................................................................................................................2311.001010000
......................................................................................................................................................................................................................................................................................................................................................................G--AT-TCTTGGCA-T--TCCAAACTATGATCACC.......................2911.001010000
...........................................................................................................................................................................................................................................................................................................................................................................................AAACTATGATCACCGACGTGC................2111.001001000
.........................................................................................................................................................................................................................................................................................................................................TTTAC-----------------------AG--AT-TCTTGGCA-T--TCC.....................................2111.001001000
........................................................................................................................................................................................................................................................................................................................................................................................TCCAAACTATGATCACCGACG...................2111.001000010
droBip1
TTGTAATACTTGCAACAC---AA---CAACCGGCTCGC--------TTTTTTCTTTAATAA-AAAGGTAAAT---TACTAAAGATAAATTAA--ATAAAACACCC-ACTTGGATAGCTAAGTTAACTCA---------------------------G---GAATAA-TTTCATTCAGACCTACCA---GTTA-------AC--GGCT---ACCCTAG--GTCT----------TTAGTTTACCATTCGCGCATCCATGACGTGTCACTC------CCCAA-----T-TGTTCTAA---------------TCAACTT-TT--CG--T-GTTTAC-----------------------AG--AT-TTTTGGCA-T--TCCAAAATATGATTACCGACGTGCAATTGGCTATTTTCTCSizeHit CountTotal NormTotal
No Reads
dp5
----------------------ACAAAACCCGGCCGCTTCACTCG-TTTTTCGCC-GACAA-AAAGGTAAAA----AC-TAACTTAAAT-------AAACCAAATTTCTTGTAT--------TAACTAGTGAAT----------------------A---GTGTTA--GCCACGACCCCTTGCAACATATTTAC-CAAAAG--ACTTTC-CC--GAG--AACTTATCAAATT-AGATGTT------TCCGCATCCATGACGTGTCACTG------TTGATA---GG-CGTTCTCA---------------TCAATT--TT--CG--T-GTTTACAACATTTCTTT----------------------C----A-GAATC--AAAATGATTACCGACGTGCAATTGGCGATTTTCTCSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
...................................GCTTCACTCG-TTTTTCGCC-GA......................................................................................................................................................................................................................................................................................................................................................................2111.0010100000000
.....................................................................................................................................................................................................................................................................................................................................................................................................TACCGACGTGCAATTGGC.........1811.0010010000000
....................................CTTCACTCG-TTTTTCGCC-G.......................................................................................................................................................................................................................................................................................................................................................................1911.0010000000100
...............................GGCCGCTTCACTCG-TTTTTCGCC-........................................................................................................................................................................................................................................................................................................................................................................2311.0010010000000
....................................................................................................................................................................................................................................................................................................................................................................................................TTACCGACGTGCAATTGGCGATT.....2311.0010100000000
..........................................................................................................................................................................................................................................................................................................................................................................................C--AAAATGATTACCGACGTGCAATTGGCG........2811.0010100000000
..........................................................................................................................................................................................................................................................................................................................................................................................C--AAAATGATTACCGACGTGCAATTGGC.........2711.0010100000000
droPer2
C-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CGCATCCATGACGTGTCACTG------TTGATA---GG-CGTTCTCA---------------TCAATT--TT--CG--T-GTTTACAACATTTCTTT----------------------C----A-GAATC--AAAATGATTACCGACGTGCAATTGGCGATTTTCTCSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
.................................................................................................................................................................................................................................................................................................................................................................................................TGATTACCGACGTGCAATTGGCGATT.....2612.002020000
......................................................................................................................................................................................................................................................................................................................................................................................GAATC--AAAATGATTACCGACGT..................2211.001100000
..........................................................................................................................................................................................................................................................................................................................................................................................C--AAAATGATTACCGACGTGC................2011.001001000
...................................................................................................................................................................................................................................................................................................................................................................................................ATTACCGACGTGCAATTGGCGAT......2311.001000100
..................................................................................................................................................................................................................................................................................................................................................................................................GATTACCGACGTGCAATTGGCGATT.....2511.001010000
droWil2
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CATGACGTGTCACTT------CCTTGG---AT-TTGTGTAT---------------TTAAACAAAA--T---T-TC-------------T-TGATT-----TTAG--AAGTATT--CC-CACACC--AAAATGATAACGGACGTGCAATTGGCAATTTTCTCSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
...................................................................................................................................................................................................................................................................................................................................................................................................ATAACGGACGTGCAATTGGC.........2015.00501310
................................................................................................................................................................................................................................................................................................................................................................................................ATGATAACGGACGTGCAATTGGCAAT......2612.00220000
..................................................................................................................................................................................................................................................................................................................................................................................................GATAACGGACGTGCAATTGGC.........2112.00200020
................................................................................................................................................................................................................................................................................................................................................................................................ATGATAACGGACGTGCAAT.............1911.00100100
...............................................................................................................................................................................................................................................................................................................................................................................................AATGATAACGGACGTGCAATTGGC.........2411.00100100
.............................................................................................................................................................................................................................................................................................................................................................................................AAAATGATAACGGACGTGCA...............2011.00101000
..................................................................................................................................................................................................................................................................................................................................................................................CC-CACACC--AAAATGATAACGGACG...................2411.00101000
..........................................................................................................................................................................................................................................................................................................................................................................................C--AAAATGATAACGGACGT..................1811.00110000
...................................................................................................................................................................................................................................................................................................................................................................................................ATAACGGACGTGCAATTGG..........1911.00100100
..............................................................................................................................................................................................................................................................................................................................................................................................AAATGATAACGGACGTGCAATTGGCA........2611.00100001
..................................................................................................................................................................................................................................................................................................................................................................................................GATAACGGACGTGCAATTGGCAAT......2411.00100100
..................................................................................................................................................................................................................................................................................................................................................................................................GATAACGGACGTGCAATTGG..........2011.00100100
.............................................................................................................................................................................................................................................................................................................................................................................................AAAATGATAACGGACGTGCAATT............2311.00100100
....................................................................................................................................................................................................................................................................................................................................................................................................TAACGGACGTGCAATTGGC.........1911.00100010
droVir3
A------ATTTA-TACAC---GGC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------C-TCTTGACACATGACGTGTCACCA------GC-----------GTTCTGAAAAATAC--------TAATTTTC----TT--T-TT--TT-----------------------AG--AGGTT-C----A-GCACC--AAAATGATCACCGACGTGCAGTTAGCCATCTTTTCSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
......................................................................................................................................................................................................................................................................................................................................................................................GCACC--AAAATGATCACCGAC....................2012.002200000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................CACCGACGTGCAGTTAGCCATCTTT..2511.001000000000000000000000000000000010000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................ACCGACGTGCAGTTAGCCATCTTT..2411.001000000000000000100000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................ATCACCGACGTGCAGTTAGCCATC.....2411.001000000000000000000000000000000000000000000000000000000000000001
........................................................................................................................................................................................................................................................................................................................................................................................................CGACGTGCAGTTAGCCATCT....2011.001000000000000000000000000000010000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................CC--AAAATGATCACCGACGTGC................2111.001000010000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................AAAATGATCACCGACGTG.................1811.001000000000000000000000000000000001000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................TCACCGACGTGCAGTTAGCCATCTTT..2611.001000000000000000000000000000000000000000100000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................AAAATGATCACCGACGTGCA...............2011.001000100000000000000000000000000000000000000000000000000000000000
droMoj3
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------C--AAAATGATAACTGACGTGCAATTGGCAATTTTCTCSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
No Reads
droGri2
A-----TATCAG-CACGCCTAAACAAAAACCGGCTTGT--------TTTTTCGCA-G--AA-AAAGGTAAATATTTCCTTCAGTTAATGCGC---------------TTAGAGCCTTTGGC-GACCA-A-----CACTACATACCAAATGTAACCCA----------TTTCACTTTATGCTGGAC---TTTTAT--------CGATTTATGT----TGAAAGC----------ACTG------GC-ATTTAACACATGACGTGTCACCAGTTCTAATACAA---AT-TCTGCTGA---TCGCTGATTTTTTC----------TG--A-TT-------------T-T-----------AT--GTGTA-C----A-GTATC--AAAATGATTACCGACGTGCAATTGGCAATATTTTCSizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads

Generated: 05/18/2015 at 10:37 AM