ID:

dsi_13185

 Coordinate:

3l:8514966-8515098 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-7.3 -6.9 -6.8

Flybase annnotation

exon [3l_8515099_8515242_+]; CDS [3l_8515099_8515184_+]; CDS [3l_8514560_8514965_+]; exon [3l_8514312_8514965_+]; intron [3l_8514966_8515098_+]

No Repeatable elements found

Sense Strand Reads

##################################################-------------------------------------------------------------------------------------------------------------------------------------##################################################
ATACGCTGCTGCTCTGCCACCACGCTCCTTCGTGGCTGAGGTCGATCCAGGTGGGTTCCTAAACTAAGCTACAAGATGGATTTCATAGCTGGATTATATTGTTTATCCTATGACTATGGATTGACTCCATAGCACCGCTTTGCCACACATACTTACTTTGTTTGTATCTTCTCTACCTTTCAGTCTTCAAGAAGAGCCAATACGGCGGATCTTACGGCCAGTCGGCGTATCTG
**************************************************************************.......(((((((..((((..........)))).....)))))))........********************************************************************************************************* 		Read size # Mismatch Hit Count Total Norm Total SRR618934
dsim w501 ovaries
 SRR553486
Makindu_3 day-old ovaries
 SRR553485
Chicharo_3 day-old ovaries
 SRR902008
ovaries
 SRR553488
RT_0-2 hours eggs
 O001
Testis
 SRR553487
NRT_0-2 hours eggs
 GSM343915
embryo
.............................................................................................................................................................................................AGAAGAGCCAATACGGCGGAT....................... 21 0 1 6.00 6 5 0 1 0 0 0 0 0
................................................................................................................................................................................................................ATCTTACGGCCAGTCGGCGTA.... 21 0 1 5.00 5 3 1 1 0 0 0 0 0
...................................CTGAGGTCGATCCAGGTGGGT................................................................................................................................................................................. 21 0 2 3.00 6 6 0 0 0 0 0 0 0
............................TTCGTGGCTGAGGTCGATCCA........................................................................................................................................................................................ 21 0 1 2.00 2 1 1 0 0 0 0 0 0
............................TTCGTGGCTGAGGTCGATCCAG....................................................................................................................................................................................... 22 0 1 2.00 2 1 1 0 0 0 0 0 0
.....................................................................TGCAGGATGGATTTCATAGCT............................................................................................................................................... 21 2 1 2.00 2 2 0 0 0 0 0 0 0
................................TGGCTGAGGTCGATCCAGGTG.................................................................................................................................................................................... 21 0 1 2.00 2 2 0 0 0 0 0 0 0
.............................................................................................................................................................................................AGAAGAGCCAATGCGGCGGAT....................... 21 1 1 2.00 2 2 0 0 0 0 0 0 0
......................CGCTCCTTCGTGGCTGAGGTC.............................................................................................................................................................................................. 21 0 1 2.00 2 2 0 0 0 0 0 0 0
..............................................................................................................................................................................................GAAGAGCCAATACGGCGGATC...................... 21 0 1 2.00 2 1 0 1 0 0 0 0 0
..........................................................................GATGGATTTCATAGCTGGAT........................................................................................................................................... 20 0 1 2.00 2 2 0 0 0 0 0 0 0
...........................................................TAAACTAAGCTACAAGATGGA......................................................................................................................................................... 21 0 1 2.00 2 1 1 0 0 0 0 0 0
..............................CGTGGCTGAGGTCGATCCAGG...................................................................................................................................................................................... 21 0 1 2.00 2 1 1 0 0 0 0 0 0
............................................................................TGGATTTCATAACTGGATTAT........................................................................................................................................ 21 1 1 2.00 2 0 2 0 0 0 0 0 0
.............................TCGTGGCTGAGGTCGATCCAGT...................................................................................................................................................................................... 22 1 1 2.00 2 0 2 0 0 0 0 0 0
..........................................................................CATGGATTTCATAACTGGATT.......................................................................................................................................... 21 2 1 2.00 2 0 2 0 0 0 0 0 0
......................................AGGTCGATCCAGGTGGGTTCC.............................................................................................................................................................................. 21 0 2 1.50 3 3 0 0 0 0 0 0 0
...........................................................................................................................................................................................CAAGAAGGGCCAATACGGCGG......................... 21 1 1 1.00 1 1 0 0 0 0 0 0 0
...........................CTTCGTGGCTGAGGTCGATC.......................................................................................................................................................................................... 20 0 1 1.00 1 1 0 0 0 0 0 0 0
.........................................TCGATCCAGGTGGGTTC............................................................................................................................................................................... 17 0 2 1.00 2 2 0 0 0 0 0 0 0
............................................................................................................................................................................CTACCTTTCGGTCTTCAAGAA........................................ 21 1 1 1.00 1 1 0 0 0 0 0 0 0
......................................................................................................................................................................................................AATACGGCGGATCTTACGGCC.............. 21 0 1 1.00 1 1 0 0 0 0 0 0 0
............................................................................................................................................................................................AAGAAGAGCCAATACGGCGGA........................ 21 0 1 1.00 1 1 0 0 0 0 0 0 0
.......................................................TTCCTAAACTAAGCTACAAGA............................................................................................................................................................. 21 0 1 1.00 1 0 1 0 0 0 0 0 0
........................................................................................................................................................................................CTTCAAGAAGAGCCAATACGGCGGAT....................... 26 0 1 1.00 1 0 1 0 0 0 0 0 0
.........................TCCTTCGTGGCTGAGGTCGAT........................................................................................................................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0
................................TGGCTGAGGTCGATCCAG....................................................................................................................................................................................... 18 0 1 1.00 1 1 0 0 0 0 0 0 0
....GCTGCTGCTCTGCCACC.................................................................................................................................................................................................................... 17 0 1 1.00 1 1 0 0 0 0 0 0 0
..............................................................................GATTTCATAGCTGGATTATATTG.................................................................................................................................... 23 0 1 1.00 1 1 0 0 0 0 0 0 0
...........................CTTCGTGGCTGAGGTC.............................................................................................................................................................................................. 16 0 1 1.00 1 0 1 0 0 0 0 0 0
....................................................................................................................................................................TATCTTCTCTACCTTTCAGT................................................. 20 0 1 1.00 1 1 0 0 0 0 0 0 0
............................TTCGTGGCTGAGGTCGAT........................................................................................................................................................................................... 18 0 1 1.00 1 1 0 0 0 0 0 0 0
.....................................................................TGCAAGATGGATTTCATAGC................................................................................................................................................ 20 1 1 1.00 1 0 0 0 1 0 0 0 0
................................................................................................................................................................................................AGAGCCAATACGGCGGAT....................... 18 0 1 1.00 1 0 1 0 0 0 0 0 0
..............................................................................................................................................................................................GAGGAGCCAATGCGGCGGATC...................... 21 2 1 1.00 1 1 0 0 0 0 0 0 0
......................................................................ACAAGATGGATTTCATA.................................................................................................................................................. 17 0 1 1.00 1 1 0 0 0 0 0 0 0
...................................................................................................................................................................................................................TTACGGCCAGTCGGCGTATCGG 22 1 1 1.00 1 1 0 0 0 0 0 0 0
.............................TCGTGGCTGAGGTCGATCCA........................................................................................................................................................................................ 20 0 1 1.00 1 0 1 0 0 0 0 0 0
..........................CCTTCGTGGCTGAGGTCGATC.......................................................................................................................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0
............................CTCGTGGCTGAGGTCGATCCA........................................................................................................................................................................................ 21 1 1 1.00 1 1 0 0 0 0 0 0 0
........................................................................................................................................................................TTCTCTACCTTTCAGTCTTCAA........................................... 22 0 1 1.00 1 0 1 0 0 0 0 0 0
..............................CGTGGCTGAGGTCGATCC......................................................................................................................................................................................... 18 0 1 1.00 1 1 0 0 0 0 0 0 0
..........................................................................................................................................................................................................CGACGGATCTCACGGCCA............. 18 2 2 1.00 2 0 0 0 0 2 0 0 0
.....................................................................TACAAGATGGATTTCATAGCT............................................................................................................................................... 21 0 1 1.00 1 0 1 0 0 0 0 0 0
.........................................................................AGATGGATTTCATAGCTGGAT........................................................................................................................................... 21 0 1 1.00 1 0 0 1 0 0 0 0 0
............................TTCGTGGCTGAGGTCGATCC......................................................................................................................................................................................... 20 0 1 1.00 1 0 0 1 0 0 0 0 0
...............................................................CTAAGCTACAAGATGGATTTC..................................................................................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0
................................................................................................TATTGTTTATCCTATGACTAT.................................................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0
........................................................................AAGATGGATTTCATAGCTGGA............................................................................................................................................ 21 0 1 1.00 1 0 0 1 0 0 0 0 0
........................................................................AACATGGATTTCATAACTGGATT.......................................................................................................................................... 23 2 1 1.00 1 0 1 0 0 0 0 0 0
.........................................................................AGATGGATTTCATAGCTGG............................................................................................................................................. 19 0 1 1.00 1 1 0 0 0 0 0 0 0
............................................................................................................................................................................................AAGAAGAGCCAATACGGCGGAT....................... 22 0 1 1.00 1 0 0 1 0 0 0 0 0
................................................................TGAGCTACAAGATGGATTTCA.................................................................................................................................................... 21 1 1 1.00 1 0 0 0 1 0 0 0 0
.....................AGGCTCCTTCGTGGCTGAGGTC.............................................................................................................................................................................................. 22 1 1 1.00 1 1 0 0 0 0 0 0 0
.............................................................................................................................................................................................AGAGGAGCCAATGCGGCGGAT....................... 21 2 1 1.00 1 1 0 0 0 0 0 0 0
...........................................................................ATGGATTTCATAGCTGG............................................................................................................................................. 17 0 1 1.00 1 1 0 0 0 0 0 0 0
..................................................................................................................................................................................................AGCCAATACGGCGGATCTTACGGCCAGTCGG........ 31 0 1 1.00 1 0 1 0 0 0 0 0 0
.............................................................................................................................................................................................................CGGATCTTACGGCCAGTA.......... 18 1 1 1.00 1 0 1 0 0 0 0 0 0
.......................................................................................................................................................................................................ATACGGCGGATCTTACGGC............... 19 0 1 1.00 1 1 0 0 0 0 0 0 0
..........................................................................................................................................................................................TCAAGAAGAGCCAATACGGCGGATC...................... 25 0 1 1.00 1 0 1 0 0 0 0 0 0
.......................................................................CAAGATGGATTTCATAGCTGG............................................................................................................................................. 21 0 1 1.00 1 1 0 0 0 0 0 0 0
..........................................................................................................CCTATGACTATGGATTGACTCC......................................................................................................... 22 0 1 1.00 1 1 0 0 0 0 0 0 0
.................................GGCTGAGGTCGATCCAGGTGG................................................................................................................................................................................... 21 0 1 1.00 1 0 1 0 0 0 0 0 0
......................................AGGTCGATCCAGGTGGGTTT............................................................................................................................................................................... 20 1 2 1.00 2 2 0 0 0 0 0 0 0
...................................................................................................TGTTTATCCTATGACTATGGA................................................................................................................. 21 0 1 1.00 1 0 1 0 0 0 0 0 0
.............................TCGTGGCTGAGGTCGATCCAG....................................................................................................................................................................................... 21 0 1 1.00 1 0 0 1 0 0 0 0 0
..............................................................................................TATATTGTTTATCCTATG......................................................................................................................... 18 0 1 1.00 1 0 0 0 0 0 1 0 0
.................................................................................................................................................................................................................TCTTACGGCCAGTCGG........ 16 0 1 1.00 1 0 1 0 0 0 0 0 0
.......................................................................................................................ATTGACTCCATAGCACCGCTT............................................................................................. 21 0 1 1.00 1 1 0 0 0 0 0 0 0
..............................................................................................................................................................................................GAAGAGCCAATACGGCGGAT....................... 20 0 1 1.00 1 0 0 1 0 0 0 0 0
........CTGCTCTGCCACCACGCTCCT............................................................................................................................................................................................................ 21 0 1 1.00 1 0 1 0 0 0 0 0 0
......................................AGGTCGATCCAGGTGGGTTC............................................................................................................................................................................... 20 0 2 0.50 1 1 0 0 0 0 0 0 0
.......................................GGTCGATCCAGGTGGGTTCCT............................................................................................................................................................................. 21 0 2 0.50 1 1 0 0 0 0 0 0 0
......................................AGGTCGATCCAGGTGGGTTCCT............................................................................................................................................................................. 22 0 2 0.50 1 1 0 0 0 0 0 0 0
........................................GTCGATCCGGGTGGGTTCCT............................................................................................................................................................................. 20 1 2 0.50 1 1 0 0 0 0 0 0 0
..................................GCTGAGGTCGATCCGGGTGGG.................................................................................................................................................................................. 21 1 2 0.50 1 1 0 0 0 0 0 0 0
..................................GCTGAGGTCGATCCAG....................................................................................................................................................................................... 16 0 2 0.50 1 1 0 0 0 0 0 0 0
...................................CTGAGGTCGATCCAGGTGGG.................................................................................................................................................................................. 20 0 2 0.50 1 1 0 0 0 0 0 0 0
....................................TGAGGTCGATCCGGGTGGGTT................................................................................................................................................................................ 21 1 2 0.50 1 1 0 0 0 0 0 0 0
.....................................GAGGTCGATCCAGGTGGGTTC............................................................................................................................................................................... 21 0 2 0.50 1 0 0 1 0 0 0 0 0
..................................GCTGAGGTCAATCCAGATGGG.................................................................................................................................................................................. 21 2 2 0.50 1 1 0 0 0 0 0 0 0
..................................GCTGAGGTCGATCCAGGTGGG.................................................................................................................................................................................. 21 0 2 0.50 1 1 0 0 0 0 0 0 0
...................................CTGAGGTCGATCCAGGTGGGTT................................................................................................................................................................................ 22 0 2 0.50 1 1 0 0 0 0 0 0 0
............................................................................................................................................................................................................GCGGATCTTACGGCCA............. 16 0 3 0.33 1 0 1 0 0 0 0 0 0
.................................GGCTGAAGTCGGTCC......................................................................................................................................................................................... 15 2 20 0.25 5 0 0 0 0 0 0 5 0
...........................................................................................................................................................................................................GACGGATCGTACGGCCA............. 17 2 7 0.14 1 0 0 0 0 1 0 0 0
........................................GTCGATCCCGATAGGTTCC.............................................................................................................................................................................. 19 3 9 0.11 1 0 0 0 0 1 0 0 0
..................................GCTGAGATCGATCCA........................................................................................................................................................................................ 15 1 11 0.09 1 0 0 1 0 0 0 0 0
......................................................................ACAAGGTGGATTGCGTAGC................................................................................................................................................ 19 3 13 0.08 1 0 0 0 0 0 0 0 1
............TCTGCCCGAACGCTCCTTC.......................................................................................................................................................................................................... 19 3 20 0.05 1 0 0 0 0 1 0 0 0

Anti-sense strand reads

TATGCGACGACGAGACGGTGGTGCGAGGAAGCACCGACTCCAGCTAGGTCCACCCAAGGATTTGATTCGATGTTCTACCTAAAGTATCGACCTAATATAACAAATAGGATACTGATACCTAACTGAGGTATCGTGGCGAAACGGTGTGTATGAATGAAACAAACATAGAAGAGATGGAAAGTCAGAAGTTCTTCTCGGTTATGCCGCCTAGAATGCCGGTCAGCCGCATAGAC
*********************************************************************************************************.......(((((((..((((..........)))).....)))))))........************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR618934
dsim w501 ovaries
 SRR553486
Makindu_3 day-old ovaries
 SRR553485
Chicharo_3 day-old ovaries
 SRR902008
ovaries
 SRR553487
NRT_0-2 hours eggs
 GSM343915
embryo
 SRR553488
RT_0-2 hours eggs
 M024
male body
...................GGTGCGAGGAAGCACCGACTC................................................................................................................................................................................................. 21 0 1 13.00 13 13 0 0 0 0 0 0 0
...............................CACCGACTCCAGCTAGGTCCA..................................................................................................................................................................................... 21 0 1 4.00 4 3 1 0 0 0 0 0 0
................GGTGGTGCGAGGAAGCACCGA.................................................................................................................................................................................................... 21 0 1 4.00 4 4 0 0 0 0 0 0 0
.....................TGCGAGGAAGCACCGACTCCA............................................................................................................................................................................................... 21 0 1 3.00 3 3 0 0 0 0 0 0 0
...............CGGTGGTGCGAGGGAGCACCG..................................................................................................................................................................................................... 21 1 1 3.00 3 3 0 0 0 0 0 0 0
......................GCGAGGAAGCACCGACTCCAG.............................................................................................................................................................................................. 21 0 1 3.00 3 3 0 0 0 0 0 0 0
.......................CGAGGAAGCACCGACTCCAGC............................................................................................................................................................................................. 21 0 1 3.00 3 3 0 0 0 0 0 0 0
........................GAGGAAGCACCGACTCCAGCT............................................................................................................................................................................................ 21 0 1 3.00 3 3 0 0 0 0 0 0 0
...........GAGACGGTGGTGCGAGGAAGC......................................................................................................................................................................................................... 21 0 1 2.00 2 2 0 0 0 0 0 0 0
...................................................................................................................................................................................AGTCAGAAGTTCTTCTCGGTT................................. 21 0 1 2.00 2 2 0 0 0 0 0 0 0
............AGACGGTGGTGCGAGGGAGCA........................................................................................................................................................................................................ 21 1 1 2.00 2 1 1 0 0 0 0 0 0
.........................................................GGATTTGATTCGATGTTCT............................................................................................................................................................. 19 0 1 2.00 2 0 1 1 0 0 0 0 0
........................................................................................................................................CGAAACGGTGTGTATGAATGGA........................................................................... 22 1 1 2.00 2 0 0 2 0 0 0 0 0
....................................................................................................................................................................................GTCAGAAGTTCTTCTCGGTTA................................ 21 0 1 2.00 2 2 0 0 0 0 0 0 0
.............................................AGGTCCACCCAAGGATTTGATT...................................................................................................................................................................... 22 0 1 2.00 2 0 2 0 0 0 0 0 0
.....................................................................................................................................................................................TCAGAAGTTCTTCTCGGTT................................. 19 0 1 2.00 2 2 0 0 0 0 0 0 0
.................GTGGTGCGAGGGAGCACCG..................................................................................................................................................................................................... 19 1 1 2.00 2 2 0 0 0 0 0 0 0
.......................................................................................................................................................................................AGAAGTTCTTCTCGGTTATGC............................. 21 0 1 2.00 2 0 2 0 0 0 0 0 0
.................GTGGTGCGAGGAAGCACCGAC................................................................................................................................................................................................... 21 0 1 2.00 2 2 0 0 0 0 0 0 0
............AGACGGTGGTGCGAGGAAGCA........................................................................................................................................................................................................ 21 0 1 2.00 2 1 0 1 0 0 0 0 0
.........................AGGAAGCACCGACTCCAGCTA........................................................................................................................................................................................... 21 0 1 2.00 2 1 0 1 0 0 0 0 0
...............CGGTGGTGCGAGGAAGCACCG..................................................................................................................................................................................................... 21 0 1 2.00 2 2 0 0 0 0 0 0 0
..................................................................................................................................................................................................TCGGTTATGCCGCCTAGAATG.................. 21 0 1 2.00 2 1 1 0 0 0 0 0 0
........................GAGGAAGCACCGACTCCAGCTA........................................................................................................................................................................................... 22 0 1 2.00 2 2 0 0 0 0 0 0 0
....................GTGCGAGGAAGCACCGACTCC................................................................................................................................................................................................ 21 0 1 1.00 1 1 0 0 0 0 0 0 0
................................................................................................................................................TGTGTATGGATGGAACAAA...................................................................... 19 2 1 1.00 1 1 0 0 0 0 0 0 0
................................................................................................................................................................................GAAAGTCAGAAGTTCTTCTCG.................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0
..........................................................................................................................................................................................................GCCGCCTAGAATGCCGGTCA........... 20 0 1 1.00 1 1 0 0 0 0 0 0 0
.............................................AGGTCCACCCAAGGATTTGAT....................................................................................................................................................................... 21 0 1 1.00 1 0 1 0 0 0 0 0 0
..................TGGTGCGAGGAAGCACCGAAT.................................................................................................................................................................................................. 21 1 1 1.00 1 1 0 0 0 0 0 0 0
.........................................................................................................AGGATACTGATACCTAACTGA........................................................................................................... 21 0 1 1.00 1 0 1 0 0 0 0 0 0
.............................................AGGTCCACCCGAGGATTTGAT....................................................................................................................................................................... 21 1 1 1.00 1 0 1 0 0 0 0 0 0
....CGACGACGAGACGGTGGTGCG................................................................................................................................................................................................................ 21 0 1 1.00 1 1 0 0 0 0 0 0 0
....................................................CCCAAGGATTTGATTCGATGT................................................................................................................................................................ 21 0 1 1.00 1 1 0 0 0 0 0 0 0
..........................................................................................................................................................................................................GCCGCCTAGGATGCCGGTCAG.......... 21 1 1 1.00 1 1 0 0 0 0 0 0 0
.............................................................................................................................................CGGTGTGTATGAATGGAACAAA...................................................................... 22 1 1 1.00 1 1 0 0 0 0 0 0 0
..................................................................................................................................TCGTGGCGGAACGGTGTGTAT.................................................................................. 21 1 1 1.00 1 1 0 0 0 0 0 0 0
...........GAGACGGTGGTGCGAGGAAG.......................................................................................................................................................................................................... 20 0 1 1.00 1 1 0 0 0 0 0 0 0
...............................................GTCCACCCAAGGATTTGGTTC..................................................................................................................................................................... 21 1 1 1.00 1 1 0 0 0 0 0 0 0
...........................................................................................................................................................................AGATGGAAAGTCAGAAGTTCT......................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0
...........................................................................................................................................................................................................CCGCCTAGAATGCCGGTCAGC......... 21 0 1 1.00 1 1 0 0 0 0 0 0 0
.........................................................................................................................................................................................................TGCCTCCTAGAATGCCGGTCA........... 21 1 1 1.00 1 1 0 0 0 0 0 0 0
................................................................................................................................................TGTGTATGAATGAAACAAACA.................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0
.............................................................................................................................................................................GTGGGAAGTCAGAAGTTCTTC....................................... 21 2 1 1.00 1 1 0 0 0 0 0 0 0
.........ACGAGACGGTGGTGCGAGGAA........................................................................................................................................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0
.....................................................................................................................................................................................TCAGAAGTTCTTCTCGGTTA................................ 20 0 1 1.00 1 1 0 0 0 0 0 0 0
......................................................CAAGGATTTGGTTCGATGTTC.............................................................................................................................................................. 21 1 1 1.00 1 0 1 0 0 0 0 0 0
.....................TGCGAGGAAGCACCGACT.................................................................................................................................................................................................. 18 0 1 1.00 1 1 0 0 0 0 0 0 0
.ATGCGACGACGAGACGGTGG.................................................................................................................................................................................................................... 20 0 1 1.00 1 1 0 0 0 0 0 0 0
.................GTGGTGCGAGGGAGCACCGA.................................................................................................................................................................................................... 20 1 1 1.00 1 1 0 0 0 0 0 0 0
....................................................................................................CAAATAGAATACTGATACCTA................................................................................................................ 21 1 1 1.00 1 1 0 0 0 0 0 0 0
..........CGAGACGGTGGTGCGAGGAAG.......................................................................................................................................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0
..............................................................................................................................................GGTGTGTATGAATGAAACAAA...................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0
......ACGGCGAGACGGTGGTGCGA............................................................................................................................................................................................................... 20 1 1 1.00 1 1 0 0 0 0 0 0 0
..................TGGTGCGAGGAAGCACCGACT.................................................................................................................................................................................................. 21 0 1 1.00 1 1 0 0 0 0 0 0 0
..................TGGTGCGAGGAAGCACCGA.................................................................................................................................................................................................... 19 0 1 1.00 1 1 0 0 0 0 0 0 0
..................................................................................................................................................................................................TCGGTTATGCCGCCTAGGAT................... 20 1 1 1.00 1 1 0 0 0 0 0 0 0
..............................................GGTCCACCCAAGGATTTGATC...................................................................................................................................................................... 21 1 1 1.00 1 0 1 0 0 0 0 0 0
.................................CCGACTCCAGCTAGGTCCA..................................................................................................................................................................................... 19 0 1 1.00 1 1 0 0 0 0 0 0 0
.............................................................TTGATTCGGTGTTCTACCTAA....................................................................................................................................................... 21 1 1 1.00 1 1 0 0 0 0 0 0 0
...............................................................GATTCGATGTTCTACCTAAAGT.................................................................................................................................................... 22 0 1 1.00 1 1 0 0 0 0 0 0 0
.......................................................................................................................................................................GAAGAGGTGGAAAGTCAGAAG............................................. 21 1 1 1.00 1 1 0 0 0 0 0 0 0
.................................................................................................TAACAAATAGGATACTGATAC................................................................................................................... 21 0 1 1.00 1 0 1 0 0 0 0 0 0
..................................................................................................................................TCGTGGCGGAACGGTGTGTA................................................................................... 20 1 1 1.00 1 1 0 0 0 0 0 0 0
.............................................................................................................................................................................GTGGAAAGTCAGAAGTTCTTC....................................... 21 1 1 1.00 1 1 0 0 0 0 0 0 0
.....GACGACGAGACGGTGGTGCGA............................................................................................................................................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0
..........CGAGACGGTGGTGCGAGGAAGC......................................................................................................................................................................................................... 22 0 1 1.00 1 1 0 0 0 0 0 0 0
..................................................................................................................................TCGTGGCGAAACGGTGTGTA................................................................................... 20 0 1 1.00 1 1 0 0 0 0 0 0 0
..................TGGTGCGAGGGAGCACCGACT.................................................................................................................................................................................................. 21 1 1 1.00 1 1 0 0 0 0 0 0 0
.............................................AGGTCCACCCAAGGATTTGGTG...................................................................................................................................................................... 22 2 1 1.00 1 0 0 1 0 0 0 0 0
.............................................................................................................................................CGGTGTGTATGAATGAAACAA....................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0
...................................................................................................................................................................................................................AATGCCGGTCAGCCGCGTAGA. 21 1 1 1.00 1 1 0 0 0 0 0 0 0
...............CGGTGGTGCGAGGAAGCACTG..................................................................................................................................................................................................... 21 1 1 1.00 1 1 0 0 0 0 0 0 0
...................GGTGCGAGGGAGCGCCGACTC................................................................................................................................................................................................. 21 2 1 1.00 1 1 0 0 0 0 0 0 0
.........................................................................................................................................................................................................TGCCGCCTAGAATGCCGGTCA........... 21 0 1 1.00 1 1 0 0 0 0 0 0 0
............................................................................................................................................................................GATGGAAAGTCAGAAGTTCTT........................................ 21 0 1 1.00 1 0 1 0 0 0 0 0 0
..............................................................................CTAAAGTATCGACCTAATATA...................................................................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0
TATGCGACGACGAGACGGTGG.................................................................................................................................................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0
.............GACGGTGGTGCGAGGAAGCAC....................................................................................................................................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0
.................................................................................................................................ATCGTGGCGAAACGGTGTGTA................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0
...................GGTGCGGGGAAGCACCGACTC................................................................................................................................................................................................. 21 1 1 1.00 1 1 0 0 0 0 0 0 0
.............................................................................................................................................CGGTGTGTATGGATGAGACAA....................................................................... 21 2 1 1.00 1 1 0 0 0 0 0 0 0
................................................................................................................................TATCGTGGCGAAACGGTGTGT.................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0
.ATGCGACGGCGAGACGGTGGT................................................................................................................................................................................................................... 21 1 1 1.00 1 1 0 0 0 0 0 0 0
....................................................................................................................................GTGGCGGGACGGTGTGTATGAA............................................................................... 22 2 1 1.00 1 0 0 0 1 0 0 0 0
...........................................................................................................................TGAGGTATCGTGGCGGAACGG......................................................................................... 21 1 1 1.00 1 1 0 0 0 0 0 0 0
.......................................................AAGGATTTGATTCGATGTTCT............................................................................................................................................................. 21 0 1 1.00 1 0 1 0 0 0 0 0 0
....................................................................................................CAAATAGGATACTGATA.................................................................................................................... 17 0 1 1.00 1 1 0 0 0 0 0 0 0
...............................................................................................................................................................CAAACATAGAAGAGATGGAAA..................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0
..........................................................................................................................................AAACGGTGTGTATGAATGGAA.......................................................................... 21 1 1 1.00 1 1 0 0 0 0 0 0 0
........................................................................................................................................CGAAACGGTGCGTATGAATG............................................................................. 20 1 1 1.00 1 1 0 0 0 0 0 0 0
...................................GACTCCAGCTAGGTCCACCCA................................................................................................................................................................................. 21 0 2 0.50 1 1 0 0 0 0 0 0 0
..................................CGACTCCAGCTAGGTCCACCCA................................................................................................................................................................................. 22 0 2 0.50 1 1 0 0 0 0 0 0 0
..........CGAGACGGTGGTGCG................................................................................................................................................................................................................ 15 0 2 0.50 1 1 0 0 0 0 0 0 0
....................................................................................................................................CTGGAGAAACGGTCTGTATGAAT.............................................................................. 23 3 2 0.50 1 0 0 0 0 0 1 0 0
......................................TCCAGCTAGGTCCACCCAAGGG............................................................................................................................................................................. 22 1 2 0.50 1 1 0 0 0 0 0 0 0
........................................CAGCTAGGTCCACCCAAGGAT............................................................................................................................................................................ 21 0 2 0.50 1 0 1 0 0 0 0 0 0
...............................................................................................................................................................................GGGAAGTCAGAAGTT........................................... 15 1 3 0.33 1 0 0 0 0 1 0 0 0
.............TTCGGTGGTGCGAGGAAGC......................................................................................................................................................................................................... 19 2 3 0.33 1 1 0 0 0 0 0 0 0
..........................................................................................................................................................................................................GCCGCCTAGGGTGCCGGTCGG.......... 21 3 3 0.33 1 1 0 0 0 0 0 0 0
.....................TGCGAGGAAGCGCCG..................................................................................................................................................................................................... 15 1 4 0.25 1 1 0 0 0 0 0 0 0
.........................................................................................................................................................................AGAGGTGGGAAGTCAGGAGTT........................................... 21 3 4 0.25 1 1 0 0 0 0 0 0 0
...............................................................................................................................................................CAAAAATAGACGAGATGGAAC..................................................... 21 3 5 0.20 1 1 0 0 0 0 0 0 0
.........................................................GGATTTGATTCGTTGT................................................................................................................................................................ 16 1 6 0.17 1 1 0 0 0 0 0 0 0
...........................................................................................................................................................................AGAGGGGAAGTCAGAAGTT........................................... 19 2 6 0.17 1 0 0 0 0 1 0 0 0
...........................................................................................................................................................................AGACGTGAAGTCAGAAGTTC.......................................... 20 3 7 0.14 1 0 1 0 0 0 0 0 0
...........................................................................................................................................................................AGAGGTGAAGTCAGAAGTTC.......................................... 20 3 15 0.07 1 0 0 0 0 1 0 0 0
..........................................................................................................................................................................................AGTTCTTCTCGGAGATG.............................. 17 2 16 0.06 1 0 0 0 0 0 0 1 0
............................................................................................................................................................................GAGGGGAAGTCAGAAGT............................................ 17 2 20 0.05 1 0 0 0 0 0 0 1 0
..............................................................................................................................................................................GGGGAAGTCAGAAGTT........................................... 16 2 20 0.05 1 0 0 0 0 0 0 1 0
.........ACGAGACGGAGGTACTAGG............................................................................................................................................................................................................. 19 3 20 0.05 1 0 0 0 0 0 0 0 1
..TGCGACGACTGGACGGT...................................................................................................................................................................................................................... 17 2 20 0.05 1 1 0 0 0 0 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim2 3l:8514916-8515148 + dsi_13185 ATACGCTGCTGCTCTGCCACCACGCTCCTTCGTGGCTGAGGTCGATCCAGGTGGGTTCCTA---AACTAAGCT----------------------ACAAGATGGATTTCATAGCTGGATTATATTGTTTA---------TC-C-TATGACTAT-------------------------------GGATTGACTCCAT-------AGCACCGCTT---TGCCACACATACTTACTTTGT-TTGTATCTTCTCTA---------CCTTTCAGTCTTCAAGAAGAGCCAATACGGCGGATCT------TACGGCCAGTCG---GCGTATCTG
droSec2 scaffold_0:1003146-1003375 + ATACGCTGCTGCTCTGCCACCACGCTCCTTCGTGGCTGAGGTCGATCCAGGTGGGTTCCTA---AACTAAGCT----------------------ACAACATGGATTTCAT----TTATTATATTGTTTA---------TC-C-TATGACTAT-------------------------------GGATTGACTCCAT-------AGCACCGCTT---TGCCACACATACTTACTTTCTTTTGTATCTTCTCTA---------CCTTTCAGTCTTCAAGAAGAGCCAATACGGCGGATCT------TACGGCCAGTCG---GCGTATCTG
dm3 chr3L:8725372-8725605 + ATACGCTGCTGCTCTGCCACCACGCTCCTTCGTGGCTGAGGTCGATCCAGGTGGGTTCCTA---AACTAAGCT----------------------ACAACATGGAGTTCTTAACTGGATAATATTGTTTA---------TC-C-TATGATTTT-------------------------------GGATTGACTTCAT-------AGCACCGCTT---TGCCACCCAGACTTACCTTCTTTTGTATCTTCTCTA---------CCTTTCAGTCTTCAAGAAGAGCCAATACGGCGGATCT------TACGGCGAGAAT---GCGTACCTG
droEre2 scaffold_4784:5317203-5317422 - CTACGCTGCTGCCCTGCCACCACGCTCCTTCGTGGCTGAGATCGATCCAGGTGGGTTCCTA---GCCTAAGCA----------------------ACATTGTGGTGTTCATATACGGATTATATTGAATC---------TTCA-CATGACAAT------------------------------------------AC-------ATCACTCTTA---TGCCACCCGTACTTACGTTCTTTTCTAT---CTCT----------ACTTTCAGTCTTCAAGAAGAGCCATTACGGCGGATCT------TATGGCGAGAAG---GCGATTCTG
droYak3 3L:3184837-3185058 - CTACGCCGCTGCCCTGCCACCACGCTCCTTCGTGGCTGAGGTCGATCCAGGTGGGTTCCTA---GTCTAAGCA----------------------ACCATATGGAGTTCATACCTGGATTATATTGATTT---------TC-C-TATAA------------------------------------------CTTCAG-------AGCACTGCTGTAATGCCA-CCGTACTTATTTTCTTTTCTAT---CTCTA---------ACTTTCAGTCTTCTCGAAGAGCTCATACGGCGGATCT------TATGGCGAGAAG---GCGGTTCTG
droRho1 scf7180000757780:6030-6284 - CTACGCCGCCGCCCTGCCCCCGCGCTCCTTCGTGGCCGAAATCGATCCAGGTGGGTTGTTAC----CTAATCA-----------------------------------CATATGAGGAATACATTAGGTT---------TCCAACAT-ACAAACATCAAGTTACAATGTTCAATTCATCCATTTGCATTGATATTACCAAAGATA-GACCTTTA---AATCACCCATACTTACTTTACTTTCTAT---CTCTA---------TGTTTCAGTCTTCAAGAAGAGCAACTACGGTGGAGCT------TATGGCGAGAAG---GCCGTTCTG
droKik1 scf7180000302474:241394-241478 - ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TACTTATTTTCGTCTCTAT---TTCTC---------AATTTCAGTCTTCAAGAAGAGCCACTACGGCGGAGCT------TATGGCGAGAAGTCGGCTGTTCTT
droAna3 scaffold_13337:7914833-7915048 - CTACGCCGCTGCTCTGCCACCTCGCTCCTTCGTGGCTGAGATCGATCCAAGTAAGTTACTTCTAAAGTTA---ATAAGAAATCAAA---AGTGCAG----------TTTCAAAC----TTATTCTTTTTG---------GC-C-TAAACTTAT-------------------------------GGTTT---------------------------------TCCTTACTAATTTCTATATATTT---CTTTA------ACTCTTTCTAGCTTTCAAGAAGAACCACGGTGGATATGGA------TATGGCGAGCGT---GTGAGGCTC
droBip1 scf7180000396541:71143-71365 - CTACGCCGCTGCTCTGCCACCACGCTCTTTCGTTGCTGAGATCGACCCAAGTAAGTTACTTTAAAAGTTA---ATTTAAAATCAAA---AGTGCGG--------ATT--TA------------TGTTTTATTCTTTCGGCT-C-TA-------------------------------------------------------------AACTCAT---TGTTAGCTTTACTAATTTCCTTATTTAT---TTTTA------ACTTCTTCTAGCTTTCAAGAAGAGCCACTACGGAGGCGGATATGGTTATGGTGAGGGT---GTGAAGCTC
dp5 XR_group8:8865661-8865831 - CTATGCCGCCGCCCTGCCACCACGCTCTTTCGTGGCCGAAATCGATCCAGGTGGGTTACCTCTAAACAAA---ATATACAATCTGA---TG-----TATGCTA------------------------------------------------------------------------------------------------ATGT------------CAT--------------------GC-CGTT---CTCTC---------GATTGCAGTCTTCAAGAAGAGCCACTATGGTGGAGCC------TATGGCCAGAAGAGCGTTACGCTC
droPer2 scaffold_50:340465-340635 + CTATGCCGCCGCCCTGCCTCCACACTCTTTCGTGGCCGAAATCGATCCAGGTGGGTTACCTCTAAACAAA---ATGTATAATCCGA---TG-----TATGCTA------------------------------------------------------------------------------------------------ATGT------------CAT--------------------GC-CGTT---CTCTC---------GATTGCAGTCTTCAAGAAGAGCCACTATGGTGGAGCC------TATGGCCAGAAGAGCGTTACGCTC
droWil2 scf2_1100000004511:8133889-8134061 - CTATGCTGCTGCTTTGCCACCACGCTCCTTCGTTGCTGAGATCGATCCCGGTAAGTTTT-A---AACGAA---ATGTTCGACTAGT---CG--------------------------------------------------------------------------------------------------------------------------------TCA-TCTTACTAACTGCTCTCTTTCC---TTT--------TCATTTTGCAGTCTTCAAGAAGAGCCACTATGGTGGTGCC------TATGGCGAGAAATCCGCCATTCTG
droVir3 scaffold_13049:6386486-6386669 + CTATGCCGCTGCTTTGCCACCACGCGCCTTCGTCGCCGAGATCGATCCAGGTTAGTTACTC---AACGCT---ACCCCCAACCACAGCCTGAGCTGCATGCTA------------------------------------------------------------------------------------------------AAGT------------TC---------------------GA-CATT---TTCTTGAATTTTCCACTTGCAGTCTTCAAGAGGAACAGCTATGGCGGTGCA------TATGGCGAGAGGACTGTCACCCTG
droMoj3 scaffold_6680:4707242-4707419 + CTACGCTGCTGCTCTGCCACCACGTTCCTTCGTTGCCGAGATCGATCCAGGTTAGTTACTACT--ACGAA---ATCTCTATCAATC---TGTGCGGCTTGCTA------------------------------------------------------------------------------------------------AAGA------------TC---------------------TC-TCTC---TTCCT----ATTCTCATTGCAGTCTTCAAGAAGAGCAGCTACGGCGGTCTC------TACGGCGATAAGACTGTCATCCTG
droGri2 scaffold_15110:6355452-6355628 - CTATGCCGCTGCATTGCCACCACGCTCGTTCGTTGCTGAGATCGATCCAGGTTAGTTACTC---AACTCGCCCATCTCTCATCAC---------------------------------------------------------------------------------------------------AGCTCGTTACTA---AAGT------------TC---------------------AA-CATT---TTCA----TTCTTTTCATTCAGTCTTCAAGAAGAGCAACTATGGCGGTCTC------TATGGCGATAAGACAATCACTTTG

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
ATACGCTGCTGCTCTGCCACCACGCTCCTTCGTGGCTGAGGTCGATCCAGGTGGGTTCCTA---AACTAAGCT----------------------ACAAGATGGATTTCATAGCTGGATTATATTGTTTA---------TC-C-TATGACTAT-------------------------------GGATTGACTCCAT-------AGCACCGCTT---TGCCACACATACTTACTTTGT-TTGTATCTTCTCTA---------CCTTTCAGTCTTCAAGAAGAGCCAATACGGCGGATCT------TACGGCCAGTCG---GCGTATCTGSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
....................................................................................................................................................................................................................................................................................AGAAGAGCCAATACGGCGGAT................................2116.00600000010005000000
.......................................................................................................................................................................................................................................................................................................ATCT------TACGGCCAGTCG---GCGTA....2115.00500000011003000000
...................................CTGAGGTCGATCCAGGTGGGT.................................................................................................................................................................................................................................................................................2123.00600000000006000000
............................TTCGTGGCTGAGGTCGATCCA........................................................................................................................................................................................................................................................................................2112.00200000001001000000
............................TTCGTGGCTGAGGTCGATCCAG.......................................................................................................................................................................................................................................................................................2212.00200000001001000000
................................TGGCTGAGGTCGATCCAGGTG....................................................................................................................................................................................................................................................................................2112.00200000000002000000
......................CGCTCCTTCGTGGCTGAGGTC..............................................................................................................................................................................................................................................................................................2112.00200000000002000000
.....................................................................................................................................................................................................................................................................................GAAGAGCCAATACGGCGGATC...............................2112.00200000010001000000
...................................................................................................GATGGATTTCATAGCTGGAT..................................................................................................................................................................................................................2012.00200000000002000000
...........................................................TA---AACTAAGCT----------------------ACAAGATGGA................................................................................................................................................................................................................................2112.00200000001001000000
..............................CGTGGCTGAGGTCGATCCAGG......................................................................................................................................................................................................................................................................................2112.00200000001001000000
.............................TCGTGGCTGAGGTCGATCCAGT......................................................................................................................................................................................................................................................................................2212.00200000002000000000
......................................AGGTCGATCCAGGTGGGTTCC..............................................................................................................................................................................................................................................................................2121.50300000000003000000
...........................CTTCGTGGCTGAGGTCGATC..........................................................................................................................................................................................................................................................................................2011.00100000000001000000
.........................................TCGATCCAGGTGGGTTC...............................................................................................................................................................................................................................................................................1721.00200000000002000000
.............................................................................................................................................................................................................................................................................................AATACGGCGGATCT------TACGGCC.................2111.00100000000001000000
...................................................................................................................................................................................................................................................................................AAGAAGAGCCAATACGGCGGA.................................2111.00100000000001000000
.......................................................TTCCTA---AACTAAGCT----------------------ACAAGA....................................................................................................................................................................................................................................2111.00100000001000000000
...............................................................................................................................................................................................................................................................................CTTCAAGAAGAGCCAATACGGCGGAT................................2611.00100000001000000000
.........................TCCTTCGTGGCTGAGGTCGAT...........................................................................................................................................................................................................................................................................................2111.00100000000001000000
................................TGGCTGAGGTCGATCCAG.......................................................................................................................................................................................................................................................................................1811.00100000000001000000
....GCTGCTGCTCTGCCACC....................................................................................................................................................................................................................................................................................................................1711.00100000000001000000
.......................................................................................................GATTTCATAGCTGGATTATATTG...........................................................................................................................................................................................................2311.00100000000001000000
...........................CTTCGTGGCTGAGGTC..............................................................................................................................................................................................................................................................................................1611.00100000001000000000
..................................................................................................................................................................................................................................................TATCTTCTCTA---------CCTTTCAGT..........................................................2011.00100000000001000000
............................TTCGTGGCTGAGGTCGAT...........................................................................................................................................................................................................................................................................................1811.00100000000001000000
.......................................................................................................................................................................................................................................................................................AGAGCCAATACGGCGGAT................................1811.00100000001000000000
...............................................................................................ACAAGATGGATTTCATA.........................................................................................................................................................................................................................1711.00100000000001000000
.............................TCGTGGCTGAGGTCGATCCA........................................................................................................................................................................................................................................................................................2011.00100000001000000000
..........................CCTTCGTGGCTGAGGTCGATC..........................................................................................................................................................................................................................................................................................2111.00100000000001000000
......................................................................................................................................................................................................................................................TTCTCTA---------CCTTTCAGTCTTCAA....................................................2211.00100000001000000000
..............................CGTGGCTGAGGTCGATCC.........................................................................................................................................................................................................................................................................................1811.00100000000001000000
........................................................................T----------------------ACAAGATGGATTTCATAGCT......................................................................................................................................................................................................................2111.00100000001000000000
..................................................................................................AGATGGATTTCATAGCTGGAT..................................................................................................................................................................................................................2111.00100000010000000000
............................TTCGTGGCTGAGGTCGATCC.........................................................................................................................................................................................................................................................................................2011.00100000010000000000
..................................................................CTAAGCT----------------------ACAAGATGGATTTC............................................................................................................................................................................................................................2111.00100000000001000000
.........................................................................................................................TATTGTTTA---------TC-C-TATGACTAT-------------------------------.................................................................................................................................................2111.00100000000001000000
.................................................................................................AAGATGGATTTCATAGCTGGA...................................................................................................................................................................................................................2111.00100000010000000000
..................................................................................................AGATGGATTTCATAGCTGG....................................................................................................................................................................................................................1911.00100000000001000000
...................................................................................................................................................................................................................................................................................AAGAAGAGCCAATACGGCGGAT................................2211.00100000010000000000
....................................................................................................ATGGATTTCATAGCTGG....................................................................................................................................................................................................................1711.00100000000001000000
.........................................................................................................................................................................................................................................................................................AGCCAATACGGCGGATCT------TACGGCCAGTCG---G........3111.00100000001000000000
....................................................................................................................................................................................................................................................................................................CGGATCT------TACGGCCAGTA.............1811.00100000001000000000
..............................................................................................................................................................................................................................................................................................ATACGGCGGATCT------TACGGC..................1911.00100000000001000000
.................................................................................................................................................................................................................................................................................TCAAGAAGAGCCAATACGGCGGATC...............................2511.00100000001000000000
................................................................................................CAAGATGGATTTCATAGCTGG....................................................................................................................................................................................................................2111.00100000000001000000
............................................................................................................................................C-C-TATGACTAT-------------------------------GGATTGACTCC......................................................................................................................................2211.00100000000001000000
.................................GGCTGAGGTCGATCCAGGTGG...................................................................................................................................................................................................................................................................................2111.00100000001000000000
......................................AGGTCGATCCAGGTGGGTTT...............................................................................................................................................................................................................................................................................2021.00200000000002000000
............................................................................................................................TGTTTA---------TC-C-TATGACTAT-------------------------------GGA..............................................................................................................................................2111.00100000001000000000
.............................TCGTGGCTGAGGTCGATCCAG.......................................................................................................................................................................................................................................................................................2111.00100000010000000000
.......................................................................................................................TATATTGTTTA---------TC-C-TATG.....................................................................................................................................................................................1811.00100001000000000000
........................................................................................................................................................................................................................................................................................................TCT------TACGGCCAGTCG---G........1611.00100000001000000000
..........................................................................................................................................................................................ATTGACTCCAT-------AGCACCGCTT---................................................................................................................2111.00100000000001000000
.....................................................................................................................................................................................................................................................................................GAAGAGCCAATACGGCGGAT................................2011.00100000010000000000
........CTGCTCTGCCACCACGCTCCT............................................................................................................................................................................................................................................................................................................2111.00100000001000000000
......................................AGGTCGATCCAGGTGGGTTC...............................................................................................................................................................................................................................................................................2020.50100000000001000000
.......................................GGTCGATCCAGGTGGGTTCCT.............................................................................................................................................................................................................................................................................2120.50100000000001000000
......................................AGGTCGATCCAGGTGGGTTCCT.............................................................................................................................................................................................................................................................................2220.50100000000001000000
..................................GCTGAGGTCGATCCAG.......................................................................................................................................................................................................................................................................................1620.50100000000001000000
...................................CTGAGGTCGATCCAGGTGGG..................................................................................................................................................................................................................................................................................2020.50100000000001000000
.....................................GAGGTCGATCCAGGTGGGTTC...............................................................................................................................................................................................................................................................................2120.50100000010000000000
..................................GCTGAGGTCGATCCAGGTGGG..................................................................................................................................................................................................................................................................................2120.50100000000001000000
...................................CTGAGGTCGATCCAGGTGGGTT................................................................................................................................................................................................................................................................................2220.50100000000001000000
...................................................................................................................................................................................................................................................................................................GCGGATCT------TACGGCCA................1630.33100000001000000000
droSec2
ATACGCTGCTGCTCTGCCACCACGCTCCTTCGTGGCTGAGGTCGATCCAGGTGGGTTCCTA---AACTAAGCT----------------------ACAACATGGATTTCAT----TTATTATATTGTTTA---------TC-C-TATGACTAT-------------------------------GGATTGACTCCAT-------AGCACCGCTT---TGCCACACATACTTACTTTCTTTTGTATCTTCTCTA---------CCTTTCAGTCTTCAAGAAGAGCCAATACGGCGGATCT------TACGGCCAGTCG---GCGTATCTGSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
...........................................................................................................TCAT----TTATTATATTGTTTA---------TC-...........................................................................................................................................................................................2112.0022000
.............................................................................................................................................................................................GACTCCAT-------AGCACCGCTT---TGC.............................................................................................................2111.0011000
..........................................................................................................................................................................................................................................TTCTTTTGTATCTTCTCTA---------CCTTTCAG...........................................................2711.0011000
...........................CTTCGTGGCTGAGGTCGATCC.........................................................................................................................................................................................................................................................................................2111.0011000
.......................GCTCCTTCGTGGCTGAGGTCG.............................................................................................................................................................................................................................................................................................2111.0011000
....................................................................................................................................................................................................................................................................................................CGGATCT------TACGGCCAGTCG---GC.......2111.0011000
.....................ACGCTCCTTCGTGGCTGAGGT...............................................................................................................................................................................................................................................................................................2111.0011000
.......................................................................................................................................................................................................................................................................................AGAGCCAATACGGCGGATCT------T.......................2111.0011000
dm3
ATACGCTGCTGCTCTGCCACCACGCTCCTTCGTGGCTGAGGTCGATCCAGGTGGGTTCCTA---AACTAAGCT----------------------ACAACATGGAGTTCTTAACTGGATAATATTGTTTA---------TC-C-TATGATTTT-------------------------------GGATTGACTTCAT-------AGCACCGCTT---TGCCACCCAGACTTACCTTCTTTTGTATCTTCTCTA---------CCTTTCAGTCTTCAAGAAGAGCCAATACGGCGGATCT------TACGGCGAGAAT---GCGTACCTGSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
...................................................................................................................................................................................................................................................................................AAGAAGAGCCAATACGGCGGATCT------T.......................251109.00109000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000005396103000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................ACGCTCCTTCGTGGCTGAGGT...............................................................................................................................................................................................................................................................................................21160.006000000000000000000000000000000000000000100000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000001100510010000000000000000000000000000000000010000002000000002040040000000020005000000000000000000000000000000000000000000000000000010000000000000001207000000042000000000000001000000000
.........................................................................................................................................................................................................................................................................................AGCCAATACGGCGGATCT------TACGGCG.................25144.004400000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000001401000020000000000000000000000000000000000000100000000000002030016000000030009001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
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..........................CCTTCGTGGCTGAGGTCGATCCAGTC.....................................................................................................................................................................................................................................................................................2612.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................CGGCGGATCT------TACGGCGAGAA.............2112.0020000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................TACGGCGAGAAT---GCGTACCT.2012.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................CT------TACGGCGAGAAT---GCGTACCTG2312.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000
...CGCTGCTGCTCTGCCACCACG.................................................................................................................................................................................................................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................CCAATACGGCGGATCT------TACGGCG.................2312.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................TACGGCGGATCT------TACGGCG.................1912.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................AAGAAGAGCCAATACGGCGGATCT------TAC.....................2712.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................ATTTT-------------------------------GGATTGACTTCAT-------AGCACCGC.....................................................................................................................2612.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................GAGCCAATACGGCGGATCT------TACGGCG.................2612.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000
................................TGGCTGAGGTCGATCCAGTC.....................................................................................................................................................................................................................................................................................2012.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001100000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................CGGATCT------TACGGCGAGAAT---.........1912.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................C-C-TATGATTTT-------------------------------GGATTGACTTC......................................................................................................................................2212.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................CACGCTCCTTCGTGGCTGA..................................................................................................................................................................................................................................................................................................1912.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................GGCGGATCT------TACGGCGAGAAT---G........2212.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................GTCTTCAAGAAGAGCCAATACGGCGGAT................................2812.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................TCGTGGCTGAGGTCGATCCAGTCT....................................................................................................................................................................................................................................................................................2412.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................AATACGGCGGATCT------TACGGCGAGAAT---.........2612.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................ATCT------TACGGCGAGAAT---GCGTAC...2212.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................GCCAATACGGCGGATCT------TACGG...................2212.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................ACGCTCCTTCGTGGCTGAGGTCGATCCA........................................................................................................................................................................................................................................................................................2812.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................TTCAGTCTTCAAGAAGAG..............................................1812.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000101000000000000000000000000000000000
.................................................................................................................................................ATGATTTT-------------------------------GGATTGACTTCAT-------AGCACCG......................................................................................................................2812.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................CCACGCTCCTTCGTGGCTGAGGT...............................................................................................................................................................................................................................................................................................2312.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002
..................................................................................................................................................................................................................................................................................................GGCGGATCT------TACGGCGAGAAT---GCG......2412.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000
..........................................................................................................................................................................................................................................................................................GCCAATACGGCGGATCT------TACGGC..................2312.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000
.............................................................................................................................................................................................................................................................................GTCTTCAAGAAGAGCCAATACGG.....................................2312.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000
......................................................................................................................................................................................................................................................................................AAGAGCCAATACGGCGGATCT------TACGGCG.................2812.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................CTCCTTCGTGGCTGAGGTCGATCC.........................................................................................................................................................................................................................................................................................2412.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................CACCACGCTCCTTCGTGGCTGAGGTCGAT...........................................................................................................................................................................................................................................................................................2912.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001
............................................................................................................................................................................................................................................................A---------CCTTTCAGTCTTCAAGAAGAGC.............................................2312.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000001000000000000000000000000
.........................................................................................................................................................................................GATTGACTTCAT-------AGCACCGCTT---TGCC............................................................................................................2612.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000011000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................TCT------TACGGCGAGAAT---GCGTAC...2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000011000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................ACGGCGGATCT------TACGGCGAGAAT---GCG......2612.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................GGCGGATCT------TACGGCGAGAA.............2012.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000010000000000000000000000000
.........................TCCTTCGTGGCTGAGGTCGATCCA........................................................................................................................................................................................................................................................................................2412.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................CTCTA---------CCTTTCAGTCTTCAAGAAGAG..............................................2612.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000
....................CACGCTCCTTCGTGGCTGAGG................................................................................................................................................................................................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................CT------TACGGCGAGAAT---GCGTACCT.2212.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000
.............CTGCCACCACGCTCCTTCGC........................................................................................................................................................................................................................................................................................................2012.0020000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................CCTTCGTGGCTGAGGTCGAT...........................................................................................................................................................................................................................................................................................2012.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000
....................................TGAGGTCGATCCAGGTGGGTTC...............................................................................................................................................................................................................................................................................2212.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000
.....................................................................................................................................................TTTT-------------------------------GGATTGACTTCAT-------AGCA.........................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000011000000000000000000000000000000000
...........................................................................................................................................................................................TTGACTTCAT-------AGCACCGCTT---T...............................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................TCTTCAAGAAGAGCCAATACG......................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000
....................................TGAGGTCGATCCAGGTGGGTTCCT.............................................................................................................................................................................................................................................................................2412.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000
.............................................................................................................................................................................................................................................................................GTCTTCAAGAAGAGCCAATACGGC....................................2412.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................GGCGGATCT------TACGGCGAGAAT---GCGTA....2612.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................GAGCCAATACGGCGGATCT------TACGGCGA................2712.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................TCTTAACTGGATAATATTGTT.........................................................................................................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000001000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................CTTCAAGAAGAGCCAATACGGCGGAT................................2612.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............GCCACCACGCTCCTTCGTGGCTGA..................................................................................................................................................................................................................................................................................................2412.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................CACCACGCTCCTTCGTGGCTGAGGTCG.............................................................................................................................................................................................................................................................................................2712.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................GGATCT------TACGGCGAGAAT---GCGTACC..2512.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................TACGGCGGATCT------TACGGCGAGAA.............2312.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................ACGCTCCTTCGTGGCTGAGGG...............................................................................................................................................................................................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000
............................TTCGTGGCTGAGGTCGATCCAGG......................................................................................................................................................................................................................................................................................2312.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001100000000000000000000000000000000000
................................................................................................................................................................................................................................................................................TTCAAGAAGAGCCAATACGGC....................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................CACCACGCTCCTTCGTGGCTGAGGTC..............................................................................................................................................................................................................................................................................................2612.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................CGCTCCTTCGTGGCTGAGG................................................................................................................................................................................................................................................................................................1912.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................GGATCT------TACGGCGAGAAT---G........1912.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000
........................CTCCTTCGTGGCTGAGGTC..............................................................................................................................................................................................................................................................................................1912.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
ATACGCTGCTGCTCTGCC.......................................................................................................................................................................................................................................................................................................................1812.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................TGAGGTCGATCCAGGTGGGTT................................................................................................................................................................................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................CTTCAAGAAGAGCCAATAC.......................................1912.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................ATCT------TACGGCGAGAAT---GCGTACCTG2512.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droEre2
CTACGCTGCTGCCCTGCCACCACGCTCCTTCGTGGCTGAGATCGATCCAGGTGGGTTCCTA---GCCTAAGCA----------------------ACATTGTGGTGTTCATATACGGATTATATTGAATC---------TTCA-CATGACAAT------------------------------------------AC-------ATCACTCTTA---TGCCACCCGTACTTACGTTCTTTTCTAT---CTCT----------ACTTTCAGTCTTCAAGAAGAGCCATTACGGCGGATCT------TATGGCGAGAAG---GCGATTCTGSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
....................CACGCTCCTTCGTGGCTGAGATCGA............................................................................................................................................................................................................................................................................................25111.001100000011
...............................................................................................................................................................................................................................................................................CTTCAAGAAGAGCCATTACGGCGGAT................................2614.0040000004
............................................................................................................................................................................................................................................CTTTTCTAT---CTCT----------ACTTTCAG...........................................................2111.0011000000
droYak3
CTACGCCGCTGCCCTGCCACCACGCTCCTTCGTGGCTGAGGTCGATCCAGGTGGGTTCCTA---GTCTAAGCA----------------------ACCATATGGAGTTCATACCTGGATTATATTGATTT---------TC-C-TATAA------------------------------------------CTTCAG-------AGCACTGCTGTAATGCCA-CCGTACTTATTTTCTTTTCTAT---CTCTA---------ACTTTCAGTCTTCTCGAAGAGCTCATACGGCGGATCT------TATGGCGAGAAG---GCGGTTCTGSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
.................CACCACGCTCCTTCGTGGCTGAGGT...............................................................................................................................................................................................................................................................................................25131.0031000000000031
..........................CCTTCGTGGCTGAGGTCGATCCAGT......................................................................................................................................................................................................................................................................................25126.0026000000000026
.....................ACGCTCCTTCGTGGCTGAGGTCGAT...........................................................................................................................................................................................................................................................................................25118.0018000000000018
...........................................................................................................................................................................................................................................................................................CTCATACGGCGGATCT------TATGGCGAG...............25117.0017000000000017
..................ACCACGCTCCTTCGTGGCTGAGGTCG.............................................................................................................................................................................................................................................................................................26115.0015000000000015
.............................................................................................................................................................................................................................................................................................CATACGGCGGATCT------TATGGCGAGAA.............25111.0011000000000011
.................CACCACGCTCCTTCGTGGCTGAGGTCGA............................................................................................................................................................................................................................................................................................2819.00900000000009
..................................................................................................................................................................................................................................................................................CTCGAAGAGCTCATACGGCGGATCT------TATGGC..................3113.00300000000003
....................................................................................................................................................................................................................................................................................CGAAGAGCTCATACGGCGGATCT------TATGGC..................2912.00200000000002
..........................................................................................................................................................................................................................................................................................GCTCATACGGCGGATCT------TATGGCGAGAAG---G........3011.00100000000001
....................................................GGGTTCCTA---GTCTAAGCA----------------------ACCATATGGA................................................................................................................................................................................................................................2811.00100000000001
..................ACCACGCTCCTTCGTGGCTGAGG................................................................................................................................................................................................................................................................................................2311.00101000000000
droRho1
CTACGCCGCCGCCCTGCCCCCGCGCTCCTTCGTGGCCGAAATCGATCCAGGTGGGTTGTTAC----CTAATCA-----------------------------------CATATGAGGAATACATTAGGTT---------TCCAACAT-ACAAACATCAAGTTACAATGTTCAATTCATCCATTTGCATTGATATTACCAAAGATA-GACCTTTA---AATCACCCATACTTACTTTACTTTCTAT---CTCTA---------TGTTTCAGTCTTCAAGAAGAGCAACTACGGTGGAGCT------TATGGCGAGAAG---GCCGTTCTGSizeHit CountTotal NormTotal
No Reads
droKik1
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TACTTATTTTCGTCTCTAT---TTCTC---------AATTTCAGTCTTCAAGAAGAGCCACTACGGCGGAGCT------TATGGCGAGAAGTCGGCTGTTCTTSizeHit CountTotal NormTotal
No Reads
droAna3
CTACGCCGCTGCTCTGCCACCTCGCTCCTTCGTGGCTGAGATCGATCCAAGTAAGTTACTTCTAAAGTTA---ATAAGAAATCAAA---AGTGCAG----------TTTCAAAC----TTATTCTTTTTG---------GC-C-TAAACTTAT-------------------------------GGTTT---------------------------------TCCTTACTAATTTCTATATATTT---CTTTA------ACTCTTTCTAGCTTTCAAGAAGAACCACGGTGGATATGGA------TATGGCGAGCGT---GTGAGGCTCSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
.........TGCTCTGCCACCTCGCTCCTTCGTGGCT....................................................................................................................................................................................................................................................................................................2811.001100000
...................................................................................................................................................................................................................................................................................................................TGGCGAGCGT---GTGAGGCT.1811.001100000
.......GCTGCTCTGCCACCTCGCTCCTTCGTGGC.....................................................................................................................................................................................................................................................................................................2911.001100000
droBip1
CTACGCCGCTGCTCTGCCACCACGCTCTTTCGTTGCTGAGATCGACCCAAGTAAGTTACTTTAAAAGTTA---ATTTAAAATCAAA---AGTGCGG--------ATT--TA------------TGTTTTATTCTTTCGGCT-C-TA-------------------------------------------------------------AACTCAT---TGTTAGCTTTACTAATTTCCTTATTTAT---TTTTA------ACTTCTTCTAGCTTTCAAGAAGAGCCACTACGGAGGCGGATATGGTTATGGTGAGGGT---GTGAAGCTCSizeHit CountTotal NormTotal
No Reads
dp5
CTATGCCGCCGCCCTGCCACCACGCTCTTTCGTGGCCGAAATCGATCCAGGTGGGTTACCTCTAAACAAA---ATATACAATCTGA---TG-----TATGCTA------------------------------------------------------------------------------------------------ATGT------------CAT--------------------GC-CGTT---CTCTC---------GATTGCAGTCTTCAAGAAGAGCCACTATGGTGGAGCC------TATGGCCAGAAGAGCGTTACGCTCSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
..............................................................................................................................................................................................................................................................................................CTATGGTGGAGCC------TATGGCCAGAA.............2411.0010100000000
........................................................................................................................................................................................................................AT--------------------GC-CGTT---CTCTC---------GATTGCA............................................................2011.0010100000000
droPer2
CTATGCCGCCGCCCTGCCTCCACACTCTTTCGTGGCCGAAATCGATCCAGGTGGGTTACCTCTAAACAAA---ATGTATAATCCGA---TG-----TATGCTA------------------------------------------------------------------------------------------------ATGT------------CAT--------------------GC-CGTT---CTCTC---------GATTGCAGTCTTCAAGAAGAGCCACTATGGTGGAGCC------TATGGCCAGAAGAGCGTTACGCTCSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
No Reads
droWil2
CTATGCTGCTGCTTTGCCACCACGCTCCTTCGTTGCTGAGATCGATCCCGGTAAGTTTT-A---AACGAA---ATGTTCGACTAGT---CG--------------------------------------------------------------------------------------------------------------------------------TCA-TCTTACTAACTGCTCTCTTTCC---TTT--------TCATTTTGCAGTCTTCAAGAAGAGCCACTATGGTGGTGCC------TATGGCGAGAAATCCGCCATTCTGSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
..ATGCTGCTGCTTTGCCACCAC..................................................................................................................................................................................................................................................................................................................2113.00303000
...TGCTGCTGCTTTGCCACCACG.................................................................................................................................................................................................................................................................................................................2113.00303000
........................CTCCTTCGTTGCTGAGATCG.............................................................................................................................................................................................................................................................................................2012.00202000
...............................................................................................................................................................................................................................................................................................TATGGTGGTGCC------TATGGCGAG...............2112.00202000
...........................CTTCGTTGCTGAGATCGATCC.........................................................................................................................................................................................................................................................................................2112.00202000
..............................CGTTGCTGAGATCGATCCCG.......................................................................................................................................................................................................................................................................................2011.00101000
............TTTGCCACCACGCTCCTTCGT........................................................................................................................................................................................................................................................................................................2111.00101000
..........GCTTTGCCACCACGCTCCTTC..........................................................................................................................................................................................................................................................................................................2111.00101000
...........CTTTGCCACCACGCTCCTTCG.........................................................................................................................................................................................................................................................................................................2111.00101000
.....................ACGCTCCTTCGTTGCTGAGATC..............................................................................................................................................................................................................................................................................................2211.00101000
.........................TCCTTCGTTGCTGAGATCGATCCCGT......................................................................................................................................................................................................................................................................................2611.00101000
.......GCTGCTTTGCCACCACGCTT..............................................................................................................................................................................................................................................................................................................2011.00101000
..........................CCTTCGTTGCTGAGATCGATC..........................................................................................................................................................................................................................................................................................2111.00101000
...............GCCACCACGCTCCTTCGTTGC.....................................................................................................................................................................................................................................................................................................2111.00101000
...............................................................................................................................................................................................................................................................................................TATGGTGGTGCC------TATGGCG.................1911.00101000
........................CTCCTTCGTTGCTGAGATCGA............................................................................................................................................................................................................................................................................................2111.00101000
......................................................................................................................................................................................................................................................................................................GTGCC------TATGGCGAGAAATCCG........2111.00101000
..............................CGTTGCTGAGATCGATCCCGT......................................................................................................................................................................................................................................................................................2111.00101000
.................................................................................................................................................................................................................................................................................................TGGTGGTGCC------TATGGCGAGAA.............2111.00101000
............................TTCGTTGCTGAGATCGATCCC........................................................................................................................................................................................................................................................................................2111.00101000
......TGCTGCTTTGCCACCACGCTC..............................................................................................................................................................................................................................................................................................................2111.00101000
.......GCTGCTTTGCCACCACGCTCC.............................................................................................................................................................................................................................................................................................................2111.00101000
.................................................................................................................................................................................................................................................................................................TGGTGGTGCC------TATGGCGAG...............1911.00101000
..........................CCTTCGTTGCTGAGATCGATCCT........................................................................................................................................................................................................................................................................................2311.00101000
....GCTGCTGCTTTGCCACCACG.................................................................................................................................................................................................................................................................................................................2011.00101000
........CTGCTTTGCCACCACGCTCCT............................................................................................................................................................................................................................................................................................................2111.00101000
..............................................................................................................................................................................................................................................................................................CTATGGTGGTGCC------TATGGCGA................2111.00101000
......................CGCTCCTTCGTTGCTGAGATC..............................................................................................................................................................................................................................................................................................2111.00101000
droVir3
CTATGCCGCTGCTTTGCCACCACGCGCCTTCGTCGCCGAGATCGATCCAGGTTAGTTACTC---AACGCT---ACCCCCAACCACAGCCTGAGCTGCATGCTA------------------------------------------------------------------------------------------------AAGT------------TC---------------------GA-CATT---TTCTTGAATTTTCCACTTGCAGTCTTCAAGAGGAACAGCTATGGCGGTGCA------TATGGCGAGAGGACTGTCACCCTGSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
..........................................................................................................................................................................................................................................................................................................A------TATGGCGAGAGGACTGT.......1819.009000000002020000000000000004100000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................GGTGCA------TATGGCGAGAGGACTGT.......2317.007000000003031000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................CTTCAAGAGGAACAGCTAT.......................................1916.006000000101000000000000000001200000000001000000000000000000000000
...............................................................................................................................................................................................................................................................................CTTCAAGAGGAACAGCTATGGCGGT.................................2515.005000000000000000000000000000000000000000000000000000000000000005
....................CACGCGCCTTCGTCGCCGAG.................................................................................................................................................................................................................................................................................................2013.003000000000000000000000000000000000000000000000000000000000000003
..................................................................................................................................................................................................................................................................................................................ATGGCGAGAGGACTGTCACCCT.2213.003000000003000000000000000000000000000000000000000000000000000000
........................CGCCTTCGTCGCCGAGATCGAT...........................................................................................................................................................................................................................................................................................2213.003000000000000000000000000000000000000000000000000000000000000003
.....CCGCTGCTTTGCCACCACGCGCCTTC..........................................................................................................................................................................................................................................................................................................2612.002000000000000000000000000000000000000000000000000000000000000002
.............................................................................................................................................................................................................................................................................GTCTTCAAGAGGAACAGCTATG......................................2212.002000000000000000000000000002000000000000000000000000000000000000
.......................GCGCCTTCGTCGCCGAGAT...............................................................................................................................................................................................................................................................................................1912.002000000000000000000000000000000000000000000000000000000000000002
......CGCTGCTTTGCCACCACGCGCCTTCGTC.......................................................................................................................................................................................................................................................................................................2812.002000000000000000000000000000000000000000000000000000000000000002
.................................CGCCGAGATCGATCCAGT......................................................................................................................................................................................................................................................................................1812.002000000000000200000000000000000000000000000000000000000000000000
.....................ACGCGCCTTCGTCGCCGAGATCGATCC.........................................................................................................................................................................................................................................................................................2712.002000000000000000000000000000000000000000000000000000000000000002
.............................TCGTCGCCGAGATCGATCC.........................................................................................................................................................................................................................................................................................1912.002000000000000000000000000000000000000000000000000000000000000002
...............................................................................................................................................................................................................................................................................CTTCAAGAGGAACAGCTATGGC....................................2212.002000000000000100000000000001000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................GTCTTCAAGAGGAACAGCTAT.......................................2112.002000000000000000000000000001100000000000000000000000000000000000
CTATGCCGCTGCTTTGCC.......................................................................................................................................................................................................................................................................................................................1812.002000000000000000000000000000000000000000000000000000000000000002
.......................GCGCCTTCGTCGCCGAGATCGATCC.........................................................................................................................................................................................................................................................................................2512.002000000000000000000000000000000000000000000000000000000000000002
.....................................................................................................................................................................................................................................................................................................GGTGCA------TATGGCGAGAGGACTGTC......2412.002000000000000000000000000000000000020000000000000000000000000000
..................ACCACGCGCCTTCGTCGCCG...................................................................................................................................................................................................................................................................................................2012.002000000000000000000000000000000000000000000000000000000000000002
........................................................................................................................................................................................................................................................................................GAACAGCTATGGCGGTGC...............................1812.002000000000000000000000000000000000000000000000000000000000000002
.....................................................................................................................................................................................................................................................................................................GGTGCA------TATGGCGAGAGGA...........1912.002000000000010000000000000000000000010000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................A------TATGGCGAGAGGACTGTC......1912.002000000001010000000000000000000000000000000000000000000000000000
.TATGCCGCTGCTTTGCCA......................................................................................................................................................................................................................................................................................................................1812.002000000000000000000000000000000000000000000000000000000000000002
.........................GCCTTCGTCGCCGAGATCGAT...........................................................................................................................................................................................................................................................................................2112.002000000000000000000000000000000000000000000000000000000000000002
..........................................................................................................................................................................................................T------------TC---------------------GA-CATT---TTCTTGAATTTTCCACT................................................................2612.002000000000000000000000000002000000000000000000000000000000000000
......................................................................................GCCTGAGCTGCATGCTA------------------------------------------------------------------------------------------------AAGT------------TC---------------------G..........................................................................................2411.001000000000000000000000000000100000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................ATGGCGAGAGGACTGTCACCC..2111.001000000100000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................CAGTCTTCAAGAGGAACAGC..........................................2011.001000000000000000000000000001000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................GGTGCA------TATGGCGAGAGGACTG........2211.001000000000000000000000000001000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................GCA------TATGGCGAGAGGACTGT.......2011.001000000000000000000000000000000000001000000000000000000000000000
................................TCGCCGAGATCGATCCAGT......................................................................................................................................................................................................................................................................................1911.001000000001000000000000000000000000000000000000000000000000000000
.....................ACGCGCCTTCGTCGCCGAG.................................................................................................................................................................................................................................................................................................1911.001000000000000000000000000000000000000000000000000000000000000001
............................................................................................................................................................................................................................................................................AGTCTTCAAGAGGAACAGC..........................................1911.001000000000000000000000000000000000010000000000000000000000000000
...............................................................................................................................................................................................................................................................................CTTCAAGAGGAACAGCTATGGCG...................................2311.001000000000000000000000000000000000001000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................CGAGAGGACTGTCACCCT.1811.001000000000010000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................AGTCTTCAAGAGGAACAGCTATGGCG...................................2611.001000000000000000000000000001000000000000000000000000000000000000
.............TTGCCACCACGCGCCTTCGTCGCCGAG.................................................................................................................................................................................................................................................................................................2711.001000000000000000000000000000000000000010000000000000000000000000
............................TTCGTCGCCGAGATCGATCC.........................................................................................................................................................................................................................................................................................2011.001000000000000000000000000001000000000000000000000000000000000000
...........................CTTCGTCGCCGAGATCGATCCAGT......................................................................................................................................................................................................................................................................................2411.001000000000000000000000000000000000000000000000000000000000000001
........................................................................................................................................................................................................................................................................................................GCA------TATGGCGAGAGGACTGTCACCCT.2611.001000000000000000000000000000000000010000000000000000000000000000
........................CGCCTTCGTCGCCGAGATC..............................................................................................................................................................................................................................................................................................1911.001000000000000000000000000000000000000000000000000000000000000001
.....................................................................................................................................................................................................................................................................................................GGTGCA------TATGGCGAGAGGACT.........2111.001000000000000000000000000001000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................GTCTTCAAGAGGAACAGCTATGGC....................................2411.001000000000000000000000000000100000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................GTGCA------TATGGCGAGAGGA...........1811.001000000000000000000000000000000000010000000000000000000000000000
...................................................................................................................................................................................................................................................................................................GCGGTGCA------TATGGCGAGAGGACTGTC......2611.001000000000010000000000000000000000000000000000000000000000000000
.......................GCGCCTTCGTCGCCGAGATCGAT...........................................................................................................................................................................................................................................................................................2311.001000000000000000000000000000000000000000000000000000000000000001
................................................................................................................................................................................................................................................................TTTTCCACTTGCAGTCTTCAA....................................................2111.001000000000000000000000000000100000000000000000000000000000000000
...............GCCACCACGCGCCTTCGTCGCCGAGAT...............................................................................................................................................................................................................................................................................................2711.001000000000000000000000000000000000000000000000000000000000000001
..............................CGTCGCCGAGATCGATCCAGTC.....................................................................................................................................................................................................................................................................................2211.001000000000000000000000000000000000000000000000000000000000000001
......................................................................................................................................................................................................................................................................................................GTGCA------TATGGCGAGAGGACTGTCACC...2611.001000000000000000000000000000100000000000000000000000000000000000
............TTTGCCACCACGCGCCTTCGTCGCCGA..................................................................................................................................................................................................................................................................................................2711.001000000000000000000000000001000000000000000000000000000000000000
............................TTCGTCGCCGAGATCGATCCAGT......................................................................................................................................................................................................................................................................................2311.001000000000000000000000000000000000000000000000000000000000000001
...TGCCGCTGCTTTGCCACCACGC................................................................................................................................................................................................................................................................................................................2211.001000000000000000000000000100000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................CGGTGCA------TATGGCGAGAGGACTGT.......2411.001000000001000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................TGGCGAGAGGACTGTCACCCT.2111.001000000000000000000000000001000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................AGTCTTCAAGAGGAACAGCTAT.......................................2211.001000000000000000000000000001000000000000000000000000000000000000
................................TCGCCGAGATCGATCCAG.......................................................................................................................................................................................................................................................................................1811.001000000100000000000000000000000000000000000000000000000000000000
.....................ACGCGCCTTCGTCGCCGAGATCGAT...........................................................................................................................................................................................................................................................................................2511.001000000000000000000000000000000000000000000000000000000000000001
............................................................................................................................................................................................................................................................................AGTCTTCAAGAGGAACAGCTATGGC....................................2511.001000000000000000000000000000000000000010000000000000000000000000
..................ACCACGCGCCTTCGTC.......................................................................................................................................................................................................................................................................................................1611.001000000000000000000000000000000000000000000000000000000000000001
...........CTTTGCCACCACGCGCCTTCGTCGCCGA..................................................................................................................................................................................................................................................................................................2811.001000000000000000000000000000100000000000000000000000000000000000
.........................................................................ACCCCCAACCACAGCCTGAGC...........................................................................................................................................................................................................................................2111.001000000000000000000000000000000000010000000000000000000000000000
.............TTGCCACCACGCGCCTTCGTCGCCGA..................................................................................................................................................................................................................................................................................................2611.001000000000000000000000000000000000000000000000000000000000000001
.................................CGCCGAGATCGATCCAGG......................................................................................................................................................................................................................................................................................1811.001000000000000000000000000001000000000000000000000000000000000000
.................CACCACGCGCCTTCGTCGCCGA..................................................................................................................................................................................................................................................................................................2211.001000000000000000000000000001000000000000000000000000000000000000
CTATGCCGCTGCTTTGCCACCACG.................................................................................................................................................................................................................................................................................................................2411.001000000000000000000010000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................TTCAAGAGGAACAGCTATGGCG...................................2211.001000000000000100000000000000000000000000000000000000000000000000
........CTGCTTTGCCACCACGCGCCA............................................................................................................................................................................................................................................................................................................2111.001000000000000000000000000000000000000000000000000000000000000001
.............................TCGTCGCCGAGATCGATCCAGT......................................................................................................................................................................................................................................................................................2211.001000000000000000000000000000000000000000000000000000000000000001
........................CGCCTTCGTCGCCGAGATCGATCC.........................................................................................................................................................................................................................................................................................2411.001000000001000000000000000000000000000000000000000000000000000000
............................TTCGTCGCCGAGATCGATC..........................................................................................................................................................................................................................................................................................1911.001000000001000000000000000000000000000000000000000000000000000000
......CGCTGCTTTGCCACCACG.................................................................................................................................................................................................................................................................................................................1811.001000000000000000000000000000000000010000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................TGGCGAGAGGACTGTCACCCTG2211.001000000000000000000000000000100000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................GGAACAGCTATGGCGGTGC...............................1911.001000000000000000000000000000000000000000000000000000000000000001
..........................................................................................................................................................................................................................................................................................................A------TATGGCGAGAGGACTGTCACC...2211.001000000000000000000000000000000000000000000000000000000000000001
.........................................................................................................................................................................................................................................................TCTTGAATTTTCCACTTGCAG...........................................................2111.001000000000000000000000000001000000000000000000000000000000000000
......................................................................................GCCTGAGCTGCATGCTA------------------------------------------------------------------------------------------------AAGT------------..................................................................................................................2111.001000000000000000000000000000000000000001000000000000000000000000
droMoj3
CTACGCTGCTGCTCTGCCACCACGTTCCTTCGTTGCCGAGATCGATCCAGGTTAGTTACTACT--ACGAA---ATCTCTATCAATC---TGTGCGGCTTGCTA------------------------------------------------------------------------------------------------AAGA------------TC---------------------TC-TCTC---TTCCT----ATTCTCATTGCAGTCTTCAAGAAGAGCAGCTACGGCGGTCTC------TACGGCGATAAGACTGTCATCCTGSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
................................TTGCCGAGATCGATCCAG.......................................................................................................................................................................................................................................................................................1811.001100000
..................................................................................................................................................................................................................................................CTC---TTCCT----ATTCTCATTGCAG...........................................................2111.001100000
.................................................................................................................................................................................................................................................................................................................TACGGCGATAAGACTGTCATCCT.2311.001100000
droGri2
CTATGCCGCTGCATTGCCACCACGCTCGTTCGTTGCTGAGATCGATCCAGGTTAGTTACTC---AACTCGCCCATCTCTCATCAC---------------------------------------------------------------------------------------------------AGCTCGTTACTA---AAGT------------TC---------------------AA-CATT---TTCA----TTCTTTTCATTCAGTCTTCAAGAAGAGCAACTATGGCGGTCTC------TATGGCGATAAGACAATCACTTTGSizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads

Generated: 05/18/2015 at 08:51 AM