ID:

dsi_13181

 Coordinate:

3r:21080069-21080218 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

Flybase annnotation

intergenic

No Repeatable elements found

Sense Strand Reads

TCAGGAGAGCGATTGTGCCGATGGCTCCGATGAAGCCAACGAATTGTGCAGTAAGTATTGCGCCGCTACCTGGCGCTGAAGTCCCTTGAATCCGCGTATACGGATACGGGGAATCCCGCGGAGAATGCGCCAGTCATTTAGCTAACCGACGACTATTTCGATTGTGTGTGTTTAGTGAACGCCTGTCCCAACAACGAGTTCAAATGCCAAACGGTCGACCAGTGCATTCCGCGCAGCTGGCTCTGCGATG
**************************************************.........(((.......(((((((.....(((...((.(((.(((((....))))).))).))....)))....)))))))(((((.(((..((((((((.....))).))).))..))).))))).)))..................************************************************** 		Read size # Mismatch Hit Count Total Norm Total M024
male body		 M023
head
 SRR553487
NRT_0-2 hours eggs
 M025
embryo
 M053
female body
 SRR553488
RT_0-2 hours eggs
 SRR553485
Chicharo_3 day-old ovaries
 SRR553486
Makindu_3 day-old ovaries
 SRR618934
dsim w501 ovaries
 SRR1275487
Male larvae		 SRR1275483
Male prepupae		 GSM343915
embryo
..................................................................................................TACGGACAAGGGGAATCC...................................................................................................................................... 18 2 1 838.00 838 596 208 17 12 0 0 3 2 0 0 0 0
.................................................................................................GTACGGACAAGGGGAATCC...................................................................................................................................... 19 3 20 17.15 343 221 71 39 2 1 3 0 5 0 1 0 0
..................................................................................................TACGGATAAGGGGAATCT...................................................................................................................................... 18 2 3 6.33 19 12 6 0 0 1 0 0 0 0 0 0 0
.................................................................................................GTACGGATAAGGGGAATC....................................................................................................................................... 18 2 2 5.50 11 7 4 0 0 0 0 0 0 0 0 0 0
..................................................................................................TACGGACAAGGGGAATC....................................................................................................................................... 17 2 7 4.57 32 0 0 11 0 0 0 1 5 3 8 4 0
..................................................................................................TACGGATAAGGGGAATCC...................................................................................................................................... 18 1 1 4.00 4 4 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................GTTCAAATGCCAAACGGTC.................................. 19 0 1 3.00 3 3 0 0 0 0 0 0 0 0 0 0 0
.....................................................CGTATTGCGCCGCTA...................................................................................................................................................................................... 15 1 1 2.00 2 0 0 0 0 0 2 0 0 0 0 0 0
.............................................................................................................................................................................CATGAACGCCTGTCCCAACAACGAGT................................................... 26 2 1 2.00 2 0 0 0 2 0 0 0 0 0 0 0 0
...................................................TTCGTATTGCGCCGCTA...................................................................................................................................................................................... 17 2 13 1.54 20 0 0 12 0 0 8 0 0 0 0 0 0
..................................................................................................TACGGACACGGGGAATCT...................................................................................................................................... 18 2 3 1.33 4 2 1 0 0 1 0 0 0 0 0 0 0
......................................................GTATTGCGCCGCTAGA.................................................................................................................................................................................... 16 2 20 1.15 23 0 0 15 0 0 7 1 0 0 0 0 0
TCAGGAGAGCGATTGTGCCGATGGCTCC.............................................................................................................................................................................................................................. 28 0 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0 0
..................................................................................................................................................................................................CGAGTTCAAATGCCAAACGGTCGACC.............................. 26 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................ATGAACGCCTGTCCCAACAACGAGT................................................... 25 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................ACGCCTGTCCCAACAACGAGTTCAAAT............................................. 27 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0
....GAGAGCGATTGTGCCGATGGCT................................................................................................................................................................................................................................ 22 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................................CCAAACGGTCGACCAGTGC......................... 19 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0
...........................CGATGAAGCCAACGAATTGTGCATGAAC................................................................................................................................................................................................... 28 3 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................................................CAAATGCCAAACGGTCGACCAGTG.......................... 24 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0
....................................................................................................................................................................................................................GGTCGACCAGTGCATTCCGCGCA............... 23 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0
.CAGGAGAGCGATTGTGCCGATGGC................................................................................................................................................................................................................................. 24 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0
.....................................................................................................................................................................................................................GTCGACCAGTGCATTCCGCGC................ 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
.....AGAGCGATTGTGCCGATG................................................................................................................................................................................................................................... 18 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0
.......................................................................................................................................................................................................TCAAATGCCAAACGGTCGACCAGT........................... 24 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0
.............................................................................................................................................................................................................GCCAAACGGTCGACCAGTG.......................... 19 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0
...............................................................................................................................................................................................................CAAACGGTCGACCAGTGC......................... 18 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0
.................................................................................................................................................................................................................................ATTCCGCGCAGCTGGCTC....... 18 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................AACAACGAGTTCAAATGCCAAACGGTC.................................. 27 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0
..................................................................................................TACGGACAGGGGGAATCC...................................................................................................................................... 18 2 4 0.75 3 2 1 0 0 0 0 0 0 0 0 0 0
................................................................................................TGTACGGACAAGGGGAATC....................................................................................................................................... 19 3 20 0.75 15 12 2 0 0 1 0 0 0 0 0 0 0
.................................................................................................ATACGGACAAGGGGAATCT...................................................................................................................................... 19 3 14 0.71 10 7 2 0 0 1 0 0 0 0 0 0 0
................GTCGATGGTTCCTATGAAGC...................................................................................................................................................................................................................... 20 3 3 0.67 2 0 2 0 0 0 0 0 0 0 0 0 0
..................................................................................................TACGGACAAGGGGAATCCG..................................................................................................................................... 19 3 18 0.61 11 2 0 5 0 1 1 0 2 0 0 0 0
....................................................TCGTATTGCGCCGCTA...................................................................................................................................................................................... 16 2 20 0.60 12 0 0 9 0 0 3 0 0 0 0 0 0
.................................................................................................TTACGGACAAGGGGAATCC...................................................................................................................................... 19 3 10 0.50 5 3 1 0 1 0 0 0 0 0 0 0 0
.................................................................................................GTACGGATAAGGGGAATCT...................................................................................................................................... 19 3 10 0.50 5 4 0 0 0 1 0 0 0 0 0 0 0
..................................................................................................TACGGATAAGGGGAATCTG..................................................................................................................................... 19 3 13 0.46 6 3 1 0 0 2 0 0 0 0 0 0 0
..................................................ATTCGTATTGCGCCGCTA...................................................................................................................................................................................... 18 3 20 0.35 7 0 0 4 0 0 3 0 0 0 0 0 0
...................................................................................................ACGGATAAGGGGAATC....................................................................................................................................... 16 1 3 0.33 1 0 0 1 0 0 0 0 0 0 0 0 0
...............................................................CGCATCCTGGGGCTGAAGTC....................................................................................................................................................................... 20 3 7 0.29 2 1 0 0 0 1 0 0 0 0 0 0 0
................................................................................................TGTACGGACACGGGGAATCT...................................................................................................................................... 20 3 4 0.25 1 1 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................ATACGGACAAGGGGAATC....................................................................................................................................... 18 2 4 0.25 1 1 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................CTACGGACAAGGGGAATCC...................................................................................................................................... 19 3 13 0.23 3 0 3 0 0 0 0 0 0 0 0 0 0
...................................................................................................ACGGACAAGGGGAATCC...................................................................................................................................... 17 2 20 0.20 4 0 0 2 0 0 1 1 0 0 0 0 0
...............................................................................................................................CGCCAGTCTTTTAGCTA.......................................................................................................... 17 1 5 0.20 1 0 0 0 0 0 0 0 0 1 0 0 0
..................CGATGGATCCGATGAA........................................................................................................................................................................................................................ 16 1 5 0.20 1 0 0 0 0 0 0 1 0 0 0 0 0
................................................................................................................................................................GTTGTGTGTATTTAGTGAA....................................................................... 19 2 7 0.14 1 0 0 0 0 0 0 0 0 0 0 0 1
...............................................................CGCATCCTGGCGCTGTAGTC....................................................................................................................................................................... 20 3 8 0.13 1 1 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................TACGGAAAAGGGGAATCC...................................................................................................................................... 18 2 8 0.13 1 0 1 0 0 0 0 0 0 0 0 0 0
................................................................GCTACCGGGAGTTGAAGTCC...................................................................................................................................................................... 20 3 9 0.11 1 0 0 0 0 1 0 0 0 0 0 0 0
...................................................................................................................................................................................................................CGGTAGAGCAGTGCATT...................... 17 2 10 0.10 1 0 0 0 0 0 1 0 0 0 0 0 0
................................................................................................GGTACGGATAAGGGGAATC....................................................................................................................................... 19 3 11 0.09 1 0 0 0 0 1 0 0 0 0 0 0 0
...................................................................................................ACGGATACGGGGGAT........................................................................................................................................ 15 1 12 0.08 1 0 0 1 0 0 0 0 0 0 0 0 0
..................................................................................................TACGGACACGGGGAATCTG..................................................................................................................................... 19 3 16 0.06 1 0 0 0 0 1 0 0 0 0 0 0 0
..................................................GTAAGTATTACGACGC........................................................................................................................................................................................ 16 2 16 0.06 1 0 0 0 0 0 0 0 0 1 0 0 0
................................................................................................GATACGGACAAGGGGAATC....................................................................................................................................... 19 3 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................TACGGACACAGGAAATCCC..................................................................................................................................... 19 3 20 0.05 1 0 1 0 0 0 0 0 0 0 0 0 0

Anti-sense strand reads

AGTCCTCTCGCTAACACGGCTACCGAGGCTACTTCGGTTGCTTAACACGTCATTCATAACGCGGCGATGGACCGCGACTTCAGGGAACTTAGGCGCATATGCCTATGCCCCTTAGGGCGCCTCTTACGCGGTCAGTAAATCGATTGGCTGCTGATAAAGCTAACACACACAAATCACTTGCGGACAGGGTTGTTGCTCAAGTTTACGGTTTGCCAGCTGGTCACGTAAGGCGCGTCGACCGAGACGCTAC
**************************************************.........(((.......(((((((.....(((...((.(((.(((((....))))).))).))....)))....)))))))(((((.(((..((((((((.....))).))).))..))).))))).)))..................************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553488
RT_0-2 hours eggs
 SRR553486
Makindu_3 day-old ovaries
 SRR618934
dsim w501 ovaries
 SRR553487
NRT_0-2 hours eggs
 SRR553485
Chicharo_3 day-old ovaries
 M024
male body
.........................................................................................................................................................................................AGGGTTGTTGGTCAA.................................................. 15 1 16 0.75 12 11 0 0 0 1 0
.........................................................................................................................................................................................AGGGTTGTTGCTTAAGT................................................ 17 1 4 0.75 3 2 1 0 0 0 0
.......................................................................CTGCGACTGCAGGGAACTTG............................................................................................................................................................... 20 3 4 0.25 1 0 0 1 0 0 0
.........................................................................................................................................................................................AGGGTTGTTGGTCAACTTTAG............................................ 21 3 6 0.17 1 1 0 0 0 0 0
.........................................................................................................................................................................................AGGGTTGTTGCTTAAGTAT.............................................. 19 2 6 0.17 1 0 1 0 0 0 0
.........................................................................................................................................................................................AGGGTTGTTGGTCAATT................................................ 17 2 20 0.10 2 2 0 0 0 0 0
........................................................................................................................................................................................TAGGGTTGTTGCTTAAGT................................................ 18 2 20 0.10 2 1 1 0 0 0 0
...............................................................................TCAGGGAACTTAGGAC........................................................................................................................................................... 16 2 20 0.10 2 1 1 0 0 0 0
.....................................TTGCTTGACACGTCA...................................................................................................................................................................................................... 15 1 12 0.08 1 0 0 1 0 0 0
.........................................................................................................................................................................................AGGGTTGTTGGTCAACTT............................................... 18 2 12 0.08 1 1 0 0 0 0 0
.........................................................................................................................................................................................AGGGTTGTTGTTCAACTGTA............................................. 20 3 17 0.06 1 1 0 0 0 0 0
...............................................................................TGAGGGAACTTAGGCGTTT........................................................................................................................................................ 19 3 19 0.05 1 0 0 0 0 0 1
...................................GGTTGCTTAAGACGT........................................................................................................................................................................................................ 15 1 20 0.05 1 0 0 0 1 0 0
.................................................................................................................................................................................................................TTGCGAGCTGCTCACGT........................ 17 2 20 0.05 1 0 0 1 0 0 0
.................................................................................................CAAGCCTATGGCCCTTAG....................................................................................................................................... 18 3 20 0.05 1 1 0 0 0 0 0
..................................................................................................AAGGCTATGCCCCTTA........................................................................................................................................ 16 2 20 0.05 1 0 0 0 1 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim2 3r:21080019-21080268 - dsi_13181 TCAGGAGAGCGATTGTGCCGATGGCTCCGATGAAGCCAACGAATTGTGCAGTAAGTAT----------------------TGCG-CC-------------------------------------GC------------------T------ACCTGGCGCTG-------AAGTCCCTTG-AATCCGCGTATACGGATACGGGGAATCCCGC------------------------------------GGAG-------AATGC-GC--------------------------------C------------AGTCATTTAGCTAACCGACGACTATT----TCGATTG--------------T-------------------------G--------TG-----TGTTTAGTGAACGCCTGTCCCAACAACGAGTTCAAATGCCAAACGGTCGACCAGTGCATTCCGCGCAGCTGGCTCTGCGATG
droSec2 scaffold_13:362580-362829 - TCAGGAGAGCGATTGTGCCGATGGCTCCGATGAAGCCAACGAATTGTGCAGTAAGTAT----------------------TGCG-CC-------------------------------------GC------------------T------ACCTGGCGCTG-------AAGTCCTTTG-AATCCGCGTGTACGGATACGGGGAATCCCGC------------------------------------GGAG-------AATGC-GC--------------------------------C------------AGTCATTTAGCTAACCGACGACTATT----TCGATTG--------------T-------------------------G--------TG-----TGTTTAGTGAACGCCTGTCCCAACAACGAGTTCAAATGCCAAACGGTCGACCAGTGCATTCCGCGCAGCTGGCTCTGCGATG
dm3 chr3R:21574791-21575041 - TCAGGAGAGCGATTGTGCCGATGGCTCCGATGAAGCCAACGAATTGTGCAGTAAGTAT----------------------TGCG-CC-------------------------------------GC------------------T------ACCTGGCGATG-------AAGTCCTTTG-AATCCACGTATACGGATACGGGGAATCCCGT------------------------------------GGAG-------AATT--------------------------------TCGCC------------AGTCATTTAGCTAACCGACGACTATT----TCGATTG--------------T-------------------------G--------TG-----TGTTTAGTGAACGCCTGTCCCAACAACGAGTTCAAATGCCAAACGGTCGACCAGTGCATTCCGCGCAGCTGGCTCTGCGATG
droEre2 scaffold_4820:6473053-6473298 + CCAGGAGAGCGATTGTGCCGATGGCTCCGATGAAGCCAACGAATTGTGCAGTAAGTAT----------------------TTAG-CC-------------------------------------GC------------------T------ACCCGGCGGCG-------AAGTCCTTTG-TATCCGC--ATCCGTATACGGGCAATCCCGC------------------------------------GGAG-------AATGC-AC--------------------------------C------------AGTCACTTAGCTAACCGACGACTATT----TCGATT-----------------------------------------G--------TG-----TGTTTAGTGAACGCCTGTCCCAACAACGAGTTCAAATGCCAAACGGTCGACCAGTGCATTCCGCGCAGCTGGCTCTGCGATG
droYak3 3R:24902650-24902903 + TCAGGAGAGCGATTGTGCCGATGGCTCCGATGAAGCCAACGAATTGTGCAGTAAGTAT----------------------TACC-CA-------------------------------------GC------------------TGGGTAAACCTGGCGGCG-------AAGTCCTTTG-AATCCGC--ATTCGCAAGCGGGATATCCCGC------------------------------------AGAG-------AATGC-A-ATC-----------------------------C------------AGTCATTTAGCTAACCGACGACTATT----TCGATT-----------------------------------------G--------TG-----TGTTTAGTGAACGCCTGTCCCAACAACGAGTTCAAATGCCAAACGGTCGACCAGTGCATTCCGCGCAGCTGGCTCTGCGATG
droEug1 scf7180000409682:1052841-1053074 + TCAGGAGAGCGATTGTGCCGATGGCTCAGACGAAGCCAACGAGTTGTGCAGTAAGTAT----------------------TTTG--------------------------GAGGAGGGAAT-----------GGGGA-----TGTGG----------------------------------------------GATGAGAAGAAATCCCAT------------------------------------AGAG-------AATGA-AC--------------------------------C------------TGCAAGCCAGCTAACCGACGACTATT----TTGATTG------------TGT-------------------------G--------TG-----TGTTTAGTGAACGCCTGTCCCAACAACGAGTTCAAATGCCAAACGGTCGACCAGTGCATTCCGCGCAGTTGGCTCTGCGACG
droBia1 scf7180000302136:2427049-2427272 - TCAGGAGAGCGATTGTGCCGATGGCTCCGACGAGGCCAACGAGCTGTGCAGTAAGTAT----------------------TACGAACCCCC------------GGGGGGAAAAGCGGGCTC----CCCATA-----------------------------------------------------------------AGCGGGGAATCCC-----------------------------------------------------------------------------------------C------------AACGAGCTAGCTAACCGACGACTATT----TCGATT-----------------------------------------G--------TG-----TGTTTAGTGAACGCCTGTCCCAACAACGAGTTCAAATGCCACACGGTCGACCAGTGCATTCCGCGCAGCTGGCTCTGCGATG
droTak1 scf7180000415367:875529-875744 + TCAGGAGAGCGATTGTGCCGATGGCTCCGACGAAGCCAACGAGTTGTGCAGTAAGTAT----------------------TTCG-CC-TCCTCATTTTTTGAAGGGGGTAAAAGAGGTC--------------------------------------------------------------------------------AGGGAATCCC------------------------------------------------------------------------------------------------------------CTAGCTAACCGACGACTATT----TCGATT-----------------------------------------G--------TG-----TGTTTAGTGAACGCCTGTCCCAACAACGAGTTCAAATGCCAAACGGTCGACCAGTGCATTCCGCGTAGCTGGCTCTGCGATG
droEle1 scf7180000491261:1178036-1178260 + TCAGGAGAGCGATTGTGCAGATGGCTCCGACGAAGCCAACGAATTGTGCAGTAAGTAT----------------------TTCA-TCCTCC------------GGG----AAAGAGGGCATTAAATCCATACGG--------------------------------------------------------------------GAATTCCGT------------------------------------GAGG-------AATGA-AC--------------------------------C--------------------AGCTAACCGACGACTATT----TCGATT-----------------------------------------G--------TG-----TGTTTAGTGAACGCCTGTCCCAACAACGAGTTCAAATGCCAAACGGTCGACCAGTGCATTCCGCGTAGTTGGCTCTGCGACG
droRho1 scf7180000780007:460323-460547 - TCAGGAGAGCGATTGTTCCGATGGCTCCGACGAAGCCAACGAGTTGTGCAGTAAGTAT----------------------TTCG-TCGTTC------------GGG----GAGAAGGGCATTAAATCCATACGG--------------------------------------------------------------------GAATCCCGT------------------------------------GAGG-------AATGA-AC--------------------------------C--------------------AGCTAACCGACGAATATT----TCGATT-----------------------------------------G--------TG-----TGTTTAGTGAACGCCTGTCCCAACAACGAGTTCAAATGCCACATGGTCGACCAGTGCATTCCGCGCAGTTGGCTCTGCGATG
droFic1 scf7180000454055:1483550-1483803 - TCAGGAGAGCGATTGTGCCGACGGTTCGGACGAGGCCAACGAATTGTGCAGTAAGTAC----------------------ACAGAACTTGC------------GGG----GAAAGGGACACTACGTCCACACGGGGAATCCTTCTGGG------------------------------------------------------AAATCCTGT------------------------------------AAGA-------A-----GC--------------------------------CAGCAGCAGCAGCAGTT--CTCTCTAACCGACGTCTATT----TCGATT-----------------------------------------G--------TG-----TGTTTAGTGAACGCCTGTCCCAACAACGAGTTCAAATGCCACACGGTCGACCAGTGCATTCCACGCAGTTGGCTCTGCGATG
droKik1 scf7180000302475:2931572-2931799 + TCAGGAGCACGATTGTTCCGATGGCTCCGACGAAACCCCCGAATTGTGCAGTAAGTAC----------------------AGC-------------------------------------------------------------A------ACCTGA----A-------AAGCTCCATGCAATC----TATGGGGATATTCGTACACCCAC------------------------------------GGAG-------A-----------------------------------------------------GACACAAAGCTAACCG-------TT----TCGATTC--------------T-------------------------G--------TGTGTGCTGTTTAGTGAATGCCTGTCCCAACAATGAGTTCAAATGCCGCAACGTCGAGCAGTGCATTCCGCGGAGCTGGCTCTGCGATG
droAna3 scaffold_13340:11563709-11563939 + TCAGGAAAGGGACTGCGCCGATGGCTCCGACGAGTCCAAGGAATTGTGCAGTAAGTACACTTTATA---------------------------------------------------------------------------------------------C-A-------AAACTTCTTA-AGTCTACGCAT----------------------------------------------------------------------------CTTAGGTCTTAAGTCTAGTTTAACATTATGCC------------AGT-ATTGACCTAAT------ACCTT----ACGATT-----------------------------------------C--------CC-----TGTTTAGTGGATGCCTGTCCCAACAATGAGTTCAAATGCGAATCGGTCGATCAGTGCATTCCGCGCAACTGGCTCTGCGATG
droBip1 scf7180000396691:471168-471404 + TCAGGAAAGAGACTGTGCCGATGGCTCCGATGAGTCCAAGGACTTGTGCAGTAAGTACACACTATACAAATAAATAACCTTTAG-CC-------------------------------------CT------------------T------ATAAAG-AGCAAAGTCTTAAGCTAA----AGCCTAG--------------------------------------------------------------------------GTA--AGC-----------------------------C------------AGT-ATTGACCTAAC------ATCTT----ACGTTT-----------------------------------------C--------CC-----CGTTTAGTGGATGCCTGTCCCAACAATGAGTTCAAGTGCGAGTCGGTCGACCAGTGCATTCCCCGCAATTGGCTCTGTGATG
dp5 2:23526418-23526663 + CCAGGAGAACGACTGTGCCGATGGATCCGATGAGGCCACAGCACTGTGCAGTAAGTAGCCA-----------------------------------------------------------TAAATCCCACCAGC--------------------------------------------------------------------GAATCCC-------AGCGCGATTCGCAATTCGCGATGCGCGTGGTGCGAAA-----AA--G-AC--------------------------------C--------------------GTCTAACCATCGAA--------TCGATTGTACTTATTATTGTTT-------------------------G--------TG-----TGTTTAGTGAATGCCTGTCCCAACAACGAGTTCAAATGCCAGACAGTCGAACAGTGCATTCCGCGCGGCTGGCTCTGTGACG
droPer2 scaffold_3:6298351-6298596 + CCAGGAGAACGACTGTGCCGATGGATCCGATGAGGCCACAGCACTGTGCAGTAAGTAGCCA-----------------------------------------------------------TAAATCCCACCAGC--------------------------------------------------------------------GAATCCC-------AGCGCGATTCGCAATTCTCGATTCGCGTGGTGCGAAA-----AA--G-AC--------------------------------C--------------------GTCTAACCATGGAA--------TCGATTGTACTTATTATTGTAT-------------------------G--------TG-----TGTTTAGTGAATGCCTGTCCCAACAACGAGTTCAAATGCCAGACAGTCGAACAGTGCATTCCGCGCGGCTGGCTCTGTGACG
droWil2 scf2_1100000004943:14473154-14473382 + TCAGGAAAATGATTGTGCCGATGCCTCTGATGAGTCGCCAGCATTATGCAGTAAGTAC----------------------ATTA-TA-------------------------------------GA------------------T------AACTCGCATAT-------AAATTA---------------CAGAGTTAATAGAGTGTTAGCAAACAAGC-------------------------------AAGAAGAAGATAT-AA--------------------------------C------------AAT----------------------TGCAATCCA-------------------------------------------C--------TAACTA--CCATAGTGAATGCCTGTCCCAACAATGAATTCAAATGCCAAACTGTCGACCAGTGCATTCCGCGCGATTGGCTATGCGATG
droVir3 scaffold_12855:7002399-7002598 - TCAGGAGAACGACTGTTCCGATGGCTCCGATGAGGACAAGATGCTCTGCAGTAAGTT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAACTAGCTAAATACTATT----TA-----------TTATTATATACAC---ATATTATATACGATGTGCACCCACAA--T-----TATATAGGGAATGAATGTCCCAACAACGAGTTCAAATGCACGACCGTTGAGCAGTGTATACCCCGCAACTGGCTCTGCGATG
droMoj3 scaffold_6540:25615845-25616036 + TCAGGAGAACGATTGCAGCGATGGCTCCGACGAGGACAGCACTCTGTGCAGTAAGTGT----------------------CTCA-A-------------------------------------ATACCTCTTAC--------------------------------------------------------------------AC---------------------------------------------------------------------------------------------------------------------------------------------------------------ACACGTCACACTATTTATGACAT--ATGTACAACTG-----AATATAGTGAATGCCTGTCCCAACAATGAGTTCAAGTGCAAGACCGTTGACCAGTGTATTCCCCGCAATTGGCTCTGCGACG
droGri2 scaffold_15074:5805682-5805887 + TCAGGAGAACGACTGCTCCGATGGCTCCGATGAGGCCAGTGCCTTGTGCAGTAAGTGGAAATCATA-----------------------------------------------------------ATCAC----------------------------------------GGCTAT----AGCCTAT--------------------------------------------------------------------------GCA--AGCTAGACATATAATATATATAAA---AATG-----------------------------------CCATA----TTG------------------------------------------------------A-----TATATAGTGAATGCCTGTCCCAACAATGAGTTCAAGTGCAAGACCGTCGATCAGTGTATACCCCGCAATTGGCTCTGCGATG

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
TCAGGAGAGCGATTGTGCCGATGGCTCCGATGAAGCCAACGAATTGTGCAGTAAGTAT----------------------TGCG-CC-------------------------------------GC------------------T------ACCTGGCGCTG-------AAGTCCCTTG-AATCCGCGTATACGGATACGGGGAATCCCGC------------------------------------GGAG-------AATGC-GC--------------------------------C------------AGTCATTTAGCTAACCGACGACTATT----TCGATTG--------------T-------------------------G--------TG-----TGTTTAGTGAACGCCTGTCCCAACAACGAGTTCAAATGCCAAACGGTCGACCAGTGCATTCCGCGCAGCTGGCTCTGCGATGSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
.................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCAAATGCCAAACGGTC..................................1913.00303000000000000000
......................................................GTAT----------------------TGCG-CC-------------------------------------GC------------------T------AGA............................................................................................................................................................................................................................................................................................................................................16201.1523000000101570000000
TCAGGAGAGCGATTGTGCCGATGGCTCC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.00100000000001000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................CGAGTTCAAATGCCAAACGGTCGACC..............................2611.00101000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................ACGCCTGTCCCAACAACGAGTTCAAAT.............................................2711.00100010000000000000
....GAGAGCGATTGTGCCGATGGCT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.00101000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................CCAAACGGTCGACCAGTGC.........................1911.00100010000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAATGCCAAACGGTCGACCAGTG..........................2411.00100010000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTCGACCAGTGCATTCCGCGCA...............2311.00100010000000000000
.CAGGAGAGCGATTGTGCCGATGGC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.00100010000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCGACCAGTGCATTCCGCGC................2111.00101000000000000000
.....AGAGCGATTGTGCCGATG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.00100010000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................TCAAATGCCAAACGGTCGACCAGT...........................2411.00100010000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCAAACGGTCGACCAGTG..........................1911.00100010000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAACGGTCGACCAGTGC.........................1811.00100010000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTCCGCGCAGCTGGCTC.......1811.00101000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................AACAACGAGTTCAAATGCCAAACGGTC..................................2711.00100010000000000000
droSec2
TCAGGAGAGCGATTGTGCCGATGGCTCCGATGAAGCCAACGAATTGTGCAGTAAGTAT----------------------TGCG-CC-------------------------------------GC------------------T------ACCTGGCGCTG-------AAGTCCTTTG-AATCCGCGTGTACGGATACGGGGAATCCCGC------------------------------------GGAG-------AATGC-GC--------------------------------C------------AGTCATTTAGCTAACCGACGACTATT----TCGATTG--------------T-------------------------G--------TG-----TGTTTAGTGAACGCCTGTCCCAACAACGAGTTCAAATGCCAAACGGTCGACCAGTGCATTCCGCGCAGCTGGCTCTGCGATGSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATGCCAAACGGTCGACCAGT...........................2212.0020200
..AGGAGAGCGATTGTGCCGATG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010100
........................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCCAAACGGTCGACCAGTG..........................2011.0010010
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCAAACGGTCGACCAGTGCA........................2111.0010100
dm3
TCAGGAGAGCGATTGTGCCGATGGCTCCGATGAAGCCAACGAATTGTGCAGTAAGTAT----------------------TGCG-CC-------------------------------------GC------------------T------ACCTGGCGATG-------AAGTCCTTTG-AATCCACGTATACGGATACGGGGAATCCCGT------------------------------------GGAG-------AATT--------------------------------TCGCC------------AGTCATTTAGCTAACCGACGACTATT----TCGATTG--------------T-------------------------G--------TG-----TGTTTAGTGAACGCCTGTCCCAACAACGAGTTCAAATGCCAAACGGTCGACCAGTGCATTCCGCGCAGCTGGCTCTGCGATGSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
TCAGGAGAGCGATTGTGCCGATGGC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................2518.0080000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000110000000000000000000000000000000000000000000000000000000050000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGCCAAACGGTCGAC...............................1616.0060000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006
....GAGAGCGATTGTGCCGATGGC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................2113.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000300000000
TCAGGAGAGCGATTGTGCCGATG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................2312.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................TCAAATGCCAAACGGTCGACCAGT...........................2412.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000
............................................................................................................................................................................................................................................................................................................................................CTATT----TCGATTG--------------T-------------------------G--------TG-----TGTTTAGA..........................................................................2412.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................TT----TCGATTG--------------T-------------------------G--------TG-----TGTTTAG...........................................................................2012.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000
TCAGGAGAGCGATTGTGCC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000
.........................TCCGATGAAGCCAACGAATTGTGCAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCAAATGCCAAACGGTCGACCA.............................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....GAGAGCGATTGTGCCGATGG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000
.....AGAGCGATTGTGCCGATGGCTCCGAT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGACCAGTGCATTCCGCGCAGCTGGC.........2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..AGGAGAGCGATTGTGCCGATGGC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTGCATTCCGCGCAGCTGG..........2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................ACGAGTTCAAATGCCAAACGGTC..................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................TGGCGATG-------AAGTCCTTTG-AATCCAC...........................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............TGTGCCGATGGCTCCGATGAAGCCAACGA............................................................................................................................................................................................................................................................................................................................................................................................................................................................2911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGCCAAACGGTCGACCAGTGCAT.......................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................T----TCGATTG--------------T-------------------------G--------TG-----TGTTTAG...........................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAACGGTCGACCAGTGCAT.......................2011.0010000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAATGCCAAACGGTCGACCAGTGCAT.......................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................T--------------------------------TCGCC------------AGTCATTTAGCTACT................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................TCAAATGCCAAACGGTCGACCAGTGC.........................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...GGAGAGCGATTGTGCCGATGG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........GATTGTGCCGATGGCTCCGAT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................GTAAGTAT----------------------TGCG-CC-------------------------------------GC------------------T------ACC............................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000
................................................................................................................................................................................................................................................................................................................................................................................................................................GCCTGTCCCAACAACGAGTTCAAATGC...........................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATGCCAAACGGTCGACCAGTGC.........................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000
.CAGGAGAGCGATTGTGCCGATGG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................ACGCCTGTCCCAACAACGAGT...................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................GAACGCCTGTCCCAACAACGA.....................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................TACGGATACGGGGAATCT......................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000
.CAGGAGAGCGATTGTGCCGATGGC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCCAAACGGTCGACCAGTGCA........................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......AGCGATTGTGCCGATGGCTCCGATGAAA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................GTCCCAACAACGAGTTCAAATGCCA.........................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................ATCCCGT------------------------------------GGAG-------AATT--------------------------------TCGCC------------AGTC...........................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000
TCAGGAGAGCGATTGTATT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000
droEre2
CCAGGAGAGCGATTGTGCCGATGGCTCCGATGAAGCCAACGAATTGTGCAGTAAGTAT----------------------TTAG-CC-------------------------------------GC------------------T------ACCCGGCGGCG-------AAGTCCTTTG-TATCCGC--ATCCGTATACGGGCAATCCCGC------------------------------------GGAG-------AATGC-AC--------------------------------C------------AGTCACTTAGCTAACCGACGACTATT----TCGATT-----------------------------------------G--------TG-----TGTTTAGTGAACGCCTGTCCCAACAACGAGTTCAAATGCCAAACGGTCGACCAGTGCATTCCGCGCAGCTGGCTCTGCGATGSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
........................CTCCGATGAAGCCAACGAAT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................2012.0020000020
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCAAACGGTCGACCAGTGCA........................2112.0020100100
....................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAATGCCAAACGGTCGACC..............................2011.0010000010
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGCCAAACGGTCGACCAGT...........................2011.0010001000
.............................................................................................................................................................................................................................................................................................................................................TATT----TCGATT-----------------------------------------G--------TG-----TGTTTAG...........................................................................2011.0010000100
.............................................................................................................................................................................................................................................................................................................................................................................................................................AACGCCTGTCCCAACAACGAGT...................................................2211.0010000100
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................AACGGTCGACCAGTGCATTCC....................2111.0010000010
......................................................................................................................................................................................................................................................................................................................................CGACGACTATT----TCGATT-----------------------------------------G--------TG-----TGTTTAG...........................................................................2711.0011000000
........................CTCCGATGAAGCCAACGAATTGTGCAT...................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000100
............................................................................................................................................................................................................................................................................................................................................................................................................................................................AAACGGTCGACCAGTGCATT......................2011.0010000100
....GAGAGCGATTGTGCCGATGG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000010
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGACCAGTGCATTCCGCG.................1811.0011000000
...........................................................................................................................................................................................................................................................................................................................................ACTATT----TCGATT-----------------------------------------G--------TG-----TGTTTAG...........................................................................2211.0011000000
........................CTCCGATGAAGCCAACGAATTGTGC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000010
droYak3
TCAGGAGAGCGATTGTGCCGATGGCTCCGATGAAGCCAACGAATTGTGCAGTAAGTAT----------------------TACC-CA-------------------------------------GC------------------TGGGTAAACCTGGCGGCG-------AAGTCCTTTG-AATCCGC--ATTCGCAAGCGGGATATCCCGC------------------------------------AGAG-------AATGC-A-ATC-----------------------------C------------AGTCATTTAGCTAACCGACGACTATT----TCGATT-----------------------------------------G--------TG-----TGTTTAGTGAACGCCTGTCCCAACAACGAGTTCAAATGCCAAACGGTCGACCAGTGCATTCCGCGCAGCTGGCTCTGCGATGSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATTCCGCGCAGCTGGCTCTGC....2317.00707000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGCCAAACGGTCGACCAGT...........................2115.00500000050000
.CAGGAGAGCGATTGTGCCGATGGCT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................2514.00401000030000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAATGCCAAACGGTCGACCAGT...........................2314.00400000040000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................TCAAATGCCAAACGGTCGACCAGT...........................2413.00301000020000
......GAGCGATTGTGCCGATGGCTCCGATGAAGCC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................3113.00300000000003
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTGCATTCCGCGCAGCTGGCTCTGC....2612.00202000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................GCCTGTCCCAACAACGAGTT..................................................2012.00201000010000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCAAATGCCAAACGGTCGACCAGT...........................2612.00200000020000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAATGCCAAACGGTCGACCAGTG..........................2412.00200000020000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................TCAAATGCCAAACGGTCGACC..............................2112.00202000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................CGCCTGTCCCAACAACGAGTT..................................................2112.00202000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCCAAACGGTCGACCAGTGCATTCCG...................2712.00200000020000
............................................................................................................................................................................................................................................................................................................................................................................................................................GAACGCCTGTCCCAACAACGAGT...................................................2312.00202000000000
..............................................................................................................................................................................................................................................................................................................................................ATT----TCGATT-----------------------------------------G--------TG-----TGTTTAGT..........................................................................2011.00100000010000
............................................................................................................................................................................................................................................................................................................................................................................................................................GAACGCCTGTCCCAACAACGAGTT..................................................2411.00101000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................CGCCTGTCCCAACAACGAGTTCAAATGCC..........................................2911.00100000010000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................AAACGGTCGACCAGTGCATTCCGC..................2411.00100000010000
...............................................................................................................................................................................................................................................................................................................................................................................................................................CGCCTGTCCCAACAACGAGTTCAAAT.............................................2611.00101000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAACGGTCGACCAGTGCATTCCGCGC................2711.00100000010000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCAAATGCCAAACGGTCGACCA.............................2411.00101000000000
...GGAGAGCGATTGTGCCGATGGCTCC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.00100000010000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................AAACGGTCGACCAGTGCATT......................2011.00100000010000
..................................................................................................................................................................................................................................................................................................................................................................................................................................CTGTCCCAACAACGAGTTCAAATGCC..........................................2611.00100000010000
........GCGATTGTGCCGATGGCTCCG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00101000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................AACGGTCGACCAGTGCATTCC....................2111.00100000010000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................CGAGTTCAAATGCCAAACG.....................................1911.00101000000000
.....AGAGCGATTGTGCCGATGGC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00101000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................GCCTGTCCCAACAACGAGT...................................................1911.00101000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCAAATGCCAAACGGTCGACCAGT...........................2511.00100000010000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................TCAAATGCCAAACGGTCGACCAGTGCA........................2711.00101000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................CAACGAGTTCAAATGCCAAACGGT...................................2411.00100000010000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTCGACCAGTGCATTCCGCGC................2211.00101000000000
..............................................................................................................................................................................................................................................................................................................................................ATT----TCGATT-----------------------------------------G--------TG-----TGTTTAGTGAAC......................................................................2411.00100000010000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................AAACGGTCGACCAGTGCATTCCGCGC................2611.00100000010000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAATGCCAAACGGTCGACCAG............................2211.00100000010000
...............................................................................................................................................................................................................................................................................................................................................................................................................................CGCCTGTCCCAACAACGA.....................................................1811.00101000000000
........................CTCCGATGAAGCCAACGAATT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100100000000
............TTGTGCCGATGGCTCCGATGAAGCC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.00101000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATGCCAAACGGTCGACCAGT...........................2211.00100000010000
TCAGGAGAGCGATTGTGCCGA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100000010000
.CAGGAGAGCGATTGTGCCGAT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100000010000
.........................TCCGATGAAGCCAACGAATTGTGCAT...................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.00100000010000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCAGTGCATTCCGCGCAGCTGGCTCTGC....2811.00101000000000
.................CCGATGGCTCCGATGAAGC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00101000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................CTGTCCCAACAACGAGTT..................................................1811.00101000000000
..........GATTGTGCCGATGGCTCCG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00101000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................AACGGTCGACCAGTGCATTCCGCGC................2511.00101000000000
....GAGAGCGATTGTGCCGATG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00100000010000
.CAGGAGAGCGATTGTGCCGATGGCTCC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.00100000010000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCAAATGCCAAACGGTCGACC..............................2311.00100000010000
....GAGAGCGATTGTGCCGATGGC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100000010000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGTGCATTCCGCGCAGCTGGCTCTGC....2711.00101000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCAAACGGTCGACCAGTGCATTCCGC..................2711.00101000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATTCCGCGCAGCTGGCTCTGC....2211.00101000000000
...................................................................................................................................................GTAAACCTGGCGGCG-------AAGT.........................................................................................................................................................................................................................................................................................................................1911.00100000010000
.............................................................................................................................................................................................................................................................................................................................................................................................................................AACGCCTGTCCCAACAACGAGTTCA................................................2511.00101000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGCATTCCGCGCAGCTGGCTCTGC....2511.00101000000000
droEug1
TCAGGAGAGCGATTGTGCCGATGGCTCAGACGAAGCCAACGAGTTGTGCAGTAAGTAT----------------------TTTG--------------------------GAGGAGGGAAT-----------GGGGA-----TGTGG----------------------------------------------GATGAGAAGAAATCCCAT------------------------------------AGAG-------AATGA-AC--------------------------------C------------TGCAAGCCAGCTAACCGACGACTATT----TTGATTG------------TGT-------------------------G--------TG-----TGTTTAGTGAACGCCTGTCCCAACAACGAGTTCAAATGCCAAACGGTCGACCAGTGCATTCCGCGCAGTTGGCTCTGCGACGSizeHit CountTotal NormTotal
No Reads
droBia1
TCAGGAGAGCGATTGTGCCGATGGCTCCGACGAGGCCAACGAGCTGTGCAGTAAGTAT----------------------TACGAACCCCC------------GGGGGGAAAAGCGGGCTC----CCCATA-----------------------------------------------------------------AGCGGGGAATCCC-----------------------------------------------------------------------------------------C------------AACGAGCTAGCTAACCGACGACTATT----TCGATT-----------------------------------------G--------TG-----TGTTTAGTGAACGCCTGTCCCAACAACGAGTTCAAATGCCACACGGTCGACCAGTGCATTCCGCGCAGCTGGCTCTGCGATGSizeHit CountTotal NormTotal
No Reads
droTak1
TCAGGAGAGCGATTGTGCCGATGGCTCCGACGAAGCCAACGAGTTGTGCAGTAAGTAT----------------------TTCG-CC-TCCTCATTTTTTGAAGGGGGTAAAAGAGGTC--------------------------------------------------------------------------------AGGGAATCCC------------------------------------------------------------------------------------------------------------CTAGCTAACCGACGACTATT----TCGATT-----------------------------------------G--------TG-----TGTTTAGTGAACGCCTGTCCCAACAACGAGTTCAAATGCCAAACGGTCGACCAGTGCATTCCGCGTAGCTGGCTCTGCGATGSizeHit CountTotal NormTotal
No Reads
droEle1
TCAGGAGAGCGATTGTGCAGATGGCTCCGACGAAGCCAACGAATTGTGCAGTAAGTAT----------------------TTCA-TCCTCC------------GGG----AAAGAGGGCATTAAATCCATACGG--------------------------------------------------------------------GAATTCCGT------------------------------------GAGG-------AATGA-AC--------------------------------C--------------------AGCTAACCGACGACTATT----TCGATT-----------------------------------------G--------TG-----TGTTTAGTGAACGCCTGTCCCAACAACGAGTTCAAATGCCAAACGGTCGACCAGTGCATTCCGCGTAGTTGGCTCTGCGACGSizeHit CountTotal NormTotal
No Reads
droRho1
TCAGGAGAGCGATTGTTCCGATGGCTCCGACGAAGCCAACGAGTTGTGCAGTAAGTAT----------------------TTCG-TCGTTC------------GGG----GAGAAGGGCATTAAATCCATACGG--------------------------------------------------------------------GAATCCCGT------------------------------------GAGG-------AATGA-AC--------------------------------C--------------------AGCTAACCGACGAATATT----TCGATT-----------------------------------------G--------TG-----TGTTTAGTGAACGCCTGTCCCAACAACGAGTTCAAATGCCACATGGTCGACCAGTGCATTCCGCGCAGTTGGCTCTGCGATGSizeHit CountTotal NormTotal
No Reads
droFic1
TCAGGAGAGCGATTGTGCCGACGGTTCGGACGAGGCCAACGAATTGTGCAGTAAGTAC----------------------ACAGAACTTGC------------GGG----GAAAGGGACACTACGTCCACACGGGGAATCCTTCTGGG------------------------------------------------------AAATCCTGT------------------------------------AAGA-------A-----GC--------------------------------CAGCAGCAGCAGCAGTT--CTCTCTAACCGACGTCTATT----TCGATT-----------------------------------------G--------TG-----TGTTTAGTGAACGCCTGTCCCAACAACGAGTTCAAATGCCACACGGTCGACCAGTGCATTCCACGCAGTTGGCTCTGCGATGSizeHit CountTotal NormTotal
No Reads
droKik1
TCAGGAGCACGATTGTTCCGATGGCTCCGACGAAACCCCCGAATTGTGCAGTAAGTAC----------------------AGC-------------------------------------------------------------A------ACCTGA----A-------AAGCTCCATGCAATC----TATGGGGATATTCGTACACCCAC------------------------------------GGAG-------A-----------------------------------------------------GACACAAAGCTAACCG-------TT----TCGATTC--------------T-------------------------G--------TGTGTGCTGTTTAGTGAATGCCTGTCCCAACAATGAGTTCAAATGCCGCAACGTCGAGCAGTGCATTCCGCGGAGCTGGCTCTGCGATGSizeHit CountTotal NormTotal
No Reads
droAna3
TCAGGAAAGGGACTGCGCCGATGGCTCCGACGAGTCCAAGGAATTGTGCAGTAAGTACACTTTATA---------------------------------------------------------------------------------------------C-A-------AAACTTCTTA-AGTCTACGCAT----------------------------------------------------------------------------CTTAGGTCTTAAGTCTAGTTTAACATTATGCC------------AGT-ATTGACCTAAT------ACCTT----ACGATT-----------------------------------------C--------CC-----TGTTTAGTGGATGCCTGTCCCAACAATGAGTTCAAATGCGAATCGGTCGATCAGTGCATTCCGCGCAACTGGCTCTGCGATGSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
.................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCAAATGCGAATCGGTC..................................1914.004110020
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCGGTCGATCAGTGCATTCCGC..................2312.002200000
.........GGACTGCGCCGATGGCTCCGACGAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.001100000
.............TGCGCCGATGGCTCCGACGA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001100000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCGATCAGTGCATTCCGCGC................2111.001000001
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATCGGTCGATCAGTGCATTCC....................2311.001100000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................AATCGGTCGATCAGTGCA........................1811.001100000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCAAATGCGAATCGGTCGATCAGTG..........................2711.001000010
..........................CCGACGAGTCCAAGGAATTGTG......................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001000010
.................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCAAATGCGAATCGGTCGATCAGT...........................2611.001000010
.............................ACGAGTCCAAGGAATTGTGCATG..................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001100000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAATGCGAATCGGTCGAT...............................1911.001100000
...GGAAAGGGACTGCGCCGAT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001010000
droBip1
TCAGGAAAGAGACTGTGCCGATGGCTCCGATGAGTCCAAGGACTTGTGCAGTAAGTACACACTATACAAATAAATAACCTTTAG-CC-------------------------------------CT------------------T------ATAAAG-AGCAAAGTCTTAAGCTAA----AGCCTAG--------------------------------------------------------------------------GTA--AGC-----------------------------C------------AGT-ATTGACCTAAC------ATCTT----ACGTTT-----------------------------------------C--------CC-----CGTTTAGTGGATGCCTGTCCCAACAATGAGTTCAAGTGCGAGTCGGTCGACCAGTGCATTCCCCGCAATTGGCTCTGTGATGSizeHit CountTotal NormTotal
No Reads
dp5
CCAGGAGAACGACTGTGCCGATGGATCCGATGAGGCCACAGCACTGTGCAGTAAGTAGCCA-----------------------------------------------------------TAAATCCCACCAGC--------------------------------------------------------------------GAATCCC-------AGCGCGATTCGCAATTCGCGATGCGCGTGGTGCGAAA-----AA--G-AC--------------------------------C--------------------GTCTAACCATCGAA--------TCGATTGTACTTATTATTGTTT-------------------------G--------TG-----TGTTTAGTGAATGCCTGTCCCAACAACGAGTTCAAATGCCAGACAGTCGAACAGTGCATTCCGCGCGGCTGGCTCTGTGACGSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
................GCCGATGGATCCGATGAGG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................1912.0020200000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................ATGCCTGTCCCAACAACGAGT...................................................2111.0010000100000
.............................................................................................................................................................................................................................................................................................................................................................................................................................AATGCCTGTCCCAACAACGAGT...................................................2211.0010000010000
................GCCGATGGATCCGATGAGGCCAC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010100000000
.......AACGACTGTGCCGATGGATCCGAC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010001000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAACAGTGCATTCCGCGCGGCTG...........2311.0010100000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGCCAGACAGTCGAACAGTGC.........................2211.0010010000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGCCAGACAGTCGAACA.............................1911.0010100000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAACAGTGCATTCCGCGCGGCT............2211.0010100000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................AACGAGTTCAAATGCCAGACAGTCGAACA.............................2911.0010000001000
............................GATGAGGCCACAGCACTGTGC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010100000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATTCCGCGCGGCTGGCTCTGT....2211.0010100000000
droPer2
CCAGGAGAACGACTGTGCCGATGGATCCGATGAGGCCACAGCACTGTGCAGTAAGTAGCCA-----------------------------------------------------------TAAATCCCACCAGC--------------------------------------------------------------------GAATCCC-------AGCGCGATTCGCAATTCTCGATTCGCGTGGTGCGAAA-----AA--G-AC--------------------------------C--------------------GTCTAACCATGGAA--------TCGATTGTACTTATTATTGTAT-------------------------G--------TG-----TGTTTAGTGAATGCCTGTCCCAACAACGAGTTCAAATGCCAGACAGTCGAACAGTGCATTCCGCGCGGCTGGCTCTGTGACGSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
....................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAATGCCAGACAGTCGAACA.............................2114.004400000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAATGCCAGACAGTCGAAC..............................2012.002110000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGCCAGACAGTCGAACAGTGC.........................2211.001100000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAATGCCAGACAGTCGAACAGTG..........................2411.001010000
droWil2
TCAGGAAAATGATTGTGCCGATGCCTCTGATGAGTCGCCAGCATTATGCAGTAAGTAC----------------------ATTA-TA-------------------------------------GA------------------T------AACTCGCATAT-------AAATTA---------------CAGAGTTAATAGAGTGTTAGCAAACAAGC-------------------------------AAGAAGAAGATAT-AA--------------------------------C------------AAT----------------------TGCAATCCA-------------------------------------------C--------TAACTA--CCATAGTGAATGCCTGTCCCAACAATGAATTCAAATGCCAAACTGTCGACCAGTGCATTCCGCGCGATTGGCTATGCGATGSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
..........GATTGTGCCGATGCCTCTGATGAGT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................2512.00220000
.....AAAATGATTGTGCCGATGC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00101000
.CAGGAAAATGATTGTGCCGATGCCTCT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.00100001
..........GATTGTGCCGATGCCTCTGATGAGTCGCC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................2911.00100100
.........................TCTGATGAGTCGCCAGCATTATGC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.00110000
................GCCGATGCCTCTGATGAGTC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00100010
......................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGCCAAACTGTCGACC..............................1811.00110000
................GCCGATGCCTCTGATGAGTCGCC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.00100100
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTCCGCGCGATTGGCTATGCGA..2311.00100100
.CAGGAAAATGATTGTGCCGATGC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.00100100
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGTGCATTCCGCGCGATTGG..........2111.00101000
...................GATGCCTCTGATGAGTCGCC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00100100
..........................CTGATGAGTCGCCAGCATTATGCAT...................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.00100010
............................................................................................................................................................................................................................................................................................................................................................................................................................................AATGAATTCAAATGCCAAACTGTCGA................................2611.00100100
..........................CTGATGAGTCGCCAGCATTATGCA....................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.00100001
..........................................................................................................................................................................AATTA---------------CAGAGTTAATAGAGTGT.......................................................................................................................................................................................................................................................................................2211.00100100
droVir3
TCAGGAGAACGACTGTTCCGATGGCTCCGATGAGGACAAGATGCTCTGCAGTAAGTT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAACTAGCTAAATACTATT----TA-----------TTATTATATACAC---ATATTATATACGATGTGCACCCACAA--T-----TATATAGGGAATGAATGTCCCAACAACGAGTTCAAATGCACGACCGTTGAGCAGTGTATACCCCGCAACTGGCTCTGCGATGSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
....................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAATGCACGACCGTTGAGCAGT...........................2311.001000100000000000000000000000000000000000000000000000000000000000
.........CGACTGTTCCGATGGCTCC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001000100000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................ATGAATGTCCCAACAACGAGT...................................................2111.001000000000000000000000000000000000000000000000000000000000001000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAGCAGTGTATACCCCGCAACT............2311.001000000000000000000000000000000000000000000000000000000000000010
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................ACGACCGTTGAGCAGTGTATACCC...................2411.001000000000000000000000000000000000000000000000000000000000000100
droMoj3
TCAGGAGAACGATTGCAGCGATGGCTCCGACGAGGACAGCACTCTGTGCAGTAAGTGT----------------------CTCA-A-------------------------------------ATACCTCTTAC--------------------------------------------------------------------AC---------------------------------------------------------------------------------------------------------------------------------------------------------------ACACGTCACACTATTTATGACAT--ATGTACAACTG-----AATATAGTGAATGCCTGTCCCAACAATGAGTTCAAGTGCAAGACCGTTGACCAGTGTATTCCCCGCAATTGGCTCTGCGACGSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
...................GATGGCTCCGACGAGGAC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.001100000
..........................................................................................................................................................................................................................................................................................................................................................................................TATGACAT--ATGTACAACTG-----A.................................................................................2011.001100000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................ATGAGTTCAAGTGCAAGACCGTTGACC..............................2711.001000001
....................................................................................................................................................................................................................................................................................................................................................................................................................................GTCCCAACAATGAGTTCAAGT.............................................2111.001000001
..........GATTGCAGCGATGGCTCCGACGAGGAC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.001000100
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGTGCAAGACCGTTGACC..............................1911.001100000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAGACCGTTGACCAGTGT.........................2011.001000001
.................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCAAGTGCAAGACCGTTGA................................2111.001000001
..........GATTGCAGCGATGGCTCCGACGAGGACA................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.001000001
droGri2
TCAGGAGAACGACTGCTCCGATGGCTCCGATGAGGCCAGTGCCTTGTGCAGTAAGTGGAAATCATA-----------------------------------------------------------ATCAC----------------------------------------GGCTAT----AGCCTAT--------------------------------------------------------------------------GCA--AGCTAGACATATAATATATATAAA---AATG-----------------------------------CCATA----TTG------------------------------------------------------A-----TATATAGTGAATGCCTGTCCCAACAATGAGTTCAAGTGCAAGACCGTCGATCAGTGTATACCCCGCAATTGGCTCTGCGATGSizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads

Generated: 05/18/2015 at 03:52 PM