ID:

dsi_13160

Coordinate:

3l:7760439-7760588 +

Confidence:

Candidate

Type:

Unknown

[View on UCSC Genome Browser {Cornell Mirror}]

Legend:

mature

star

mismatch in read

Predicted structure

-23.5	-23.5	-23.1	-23.1

Flybase annnotation

CDS [3l_7760589_7760859_+]; exon [3l_7760589_7760859_+]; intron [3l_7759749_7760588_+]

No Repeatable elements found

Sense Strand Reads

--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------################################################## TGTCTGCCGTCACAAGTGTGTGAGTGGCTAATTTGAAGTGCGAATTGTGTACAACGAAGCAAACAAATTAGAGGGAGGGCGGCGGTAATTTTTAATTGTTTTCAAAATGTGTCGCGTAATTTCGATTGTCATCGATTGGTTAGATAATTCGCAATAAAGGGTGCCCCATTAAGTTTTTTCCCACAATTTTTTATTTGCAGATCGGAGTCGCCCACTTCGTCGCACCGCTCCAGTCCGCCCATCAGTCCCG ************************************************........((............(((.((((((.(((.((((((.(((((..........((((........(((((....))))).......))))....))))).))))))))))).....))))...)))..............))..************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M053 female body	SRR902009 testis	SRR553487 NRT_0-2 hours eggs	SRR618934 dsim w501 ovaries	SRR553486 Makindu_3 day-old ovaries	SRR553488 RT_0-2 hours eggs
.........................................................................................................AATGTGTCGCGTAATTTC...............................................................................................................................	18	0	1	1.00	1	1	0	0	0	0	0
...................................................................................................................................................................................................................................CTACAGTCCGACGATCAGT....	19	3	13	0.15	2	0	2	0	0	0	0
........................................................................................................................TTGGATTGTCATCGGTCGGT..............................................................................................................	20	3	9	0.11	1	0	0	1	0	0	0
.........................................................AGCATACAAATTAGAG.................................................................................................................................................................................	16	1	12	0.08	1	0	0	0	1	0	0
................................................................................................................................................................................................................................CCTCTCCAGTCCGCCGA.........	17	2	19	0.05	1	0	0	0	0	1	0
.....GCCTTCCCAAGTCTGTGA...................................................................................................................................................................................................................................	18	3	20	0.05	1	0	0	0	0	0	1

Anti-sense strand reads

ACAGACGGCAGTGTTCACACACTCACCGATTAAACTTCACGCTTAACACATGTTGCTTCGTTTGTTTAATCTCCCTCCCGCCGCCATTAAAAATTAACAAAAGTTTTACACAGCGCATTAAAGCTAACAGTAGCTAACCAATCTATTAAGCGTTATTTCCCACGGGGTAATTCAAAAAAGGGTGTTAAAAAATAAACGTCTAGCCTCAGCGGGTGAAGCAGCGTGGCGAGGTCAGGCGGGTAGTCAGGGC ************************************************........((............(((.((((((.(((.((((((.(((((..........((((........(((((....))))).......))))....))))).))))))))))).....))))...)))..............))..************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	SRR553487 NRT_0-2 hours eggs	SRR553488 RT_0-2 hours eggs	SRR553486 Makindu_3 day-old ovaries	SRR618934 dsim w501 ovaries	SRR902009 testis
.....................................CACGCTTAAGACACCTTGCTT................................................................................................................................................................................................	21	3	1	2.00	2	1	1	0	0	0
......................................ACGCTTAAGACACCTTGCTT................................................................................................................................................................................................	20	3	10	0.20	2	0	0	2	0	0
...........................................................................................................................................................................................................CCTCAGCCGGTGGAGCAG.............................	18	2	13	0.08	1	0	0	0	1	0
...............................................................................................................................................................................AAAAGGGTGTTAAAAAAA.........................................................	18	1	14	0.07	1	0	0	0	0	1
..................................................................................................................................................................................AGGGTGTTAAAAGATA........................................................	16	1	16	0.06	1	0	0	1	0	0
.................................................................................................................................................................................AAGGGTGTTTAAAAATTA.......................................................	18	2	20	0.05	1	1	0	0	0	0

Generated: 04/24/2015 at 10:29 AM