ID:

dsi_13150

 Coordinate:

x:6284193-6284342 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-37.3 -37.2 -36.9

Flybase annnotation

intergenic

No Repeatable elements found

Sense Strand Reads

AAAGTTGGCAGCGATGATGGACGAAGACATGGACAAGATGGTCAGCTACAGTGAGTATTGCCGCAAGGCTTCGCCACTCCCCTCACTCTGCTCAACTCGAGTGGTGGCACCCCCAATCAACGAATCCCGTACAGAATCCACCGGTTACGCAGGCGCCGCAATCGACGACAAAACGCAGACACCACTTTCGACTGGTGGTGGTGTAGCTGGTGTTACTGGTGGAACTGGAGGAGCAGCCGAAGGTGCAGCT
**************************************************(((.((...(((....)))...))))).........(((((((...((((...(((((.((........(((.....)))...........((....))..)).)))))..)))).))......)))))(((((((.......)))))))************************************************** 		Read size # Mismatch Hit Count Total Norm Total M024
male body		 M023
head
 SRR553487
NRT_0-2 hours eggs
 SRR553488
RT_0-2 hours eggs
 SRR618934
dsim w501 ovaries
 M025
embryo
 SRR553486
Makindu_3 day-old ovaries
 M053
female body
 GSM343915
embryo
 SRR902009
testis
 SRR553485
Chicharo_3 day-old ovaries
....................................................GAGTATGGTCGCAAGGCT.................................................................................................................................................................................... 18 2 2 56.50 113 72 13 14 5 5 2 2 0 0 0 0
..................................................GGGAGTATGGTCGCAAGGCT.................................................................................................................................................................................... 20 3 5 9.40 47 25 15 1 2 0 1 0 2 0 0 1
...................................................GGAGTATGGTCGCAAGGCT.................................................................................................................................................................................... 19 3 13 9.38 122 71 21 8 6 3 3 6 4 0 0 0
.....................................................AGTATGGTCGCAAGGCT.................................................................................................................................................................................... 17 2 7 3.14 22 0 0 9 9 2 0 1 0 0 0 1
..................................................GTGAGTATGGTCGCAAGGC..................................................................................................................................................................................... 19 2 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0
....TTGGCATCGACGATGGACGAAGACAT............................................................................................................................................................................................................................ 26 2 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0
..................................................GTGAGTATTGCCGCAAGGCTTCGC................................................................................................................................................................................ 24 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0
...............GATGGACGAAGACATGGAC........................................................................................................................................................................................................................ 19 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0
..................GGACGAAGACATGGACAAGATGGTCAGC............................................................................................................................................................................................................ 28 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0
.............................................................................................................................................................................................................GCTGGTGGTACAGGTGGAACCGGA..................... 24 3 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0
............GATGATGGACGAAGACATGGACAAGAT................................................................................................................................................................................................................... 27 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
............GATGATGGACGAAGACAT............................................................................................................................................................................................................................ 18 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................GTGGTGTAGCTGGTGTTACTGGT.............................. 23 0 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0
................ATGGACGAAGACATGGACAA...................................................................................................................................................................................................................... 20 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
...GTTGGCAGCGATGATGGACGAAGA............................................................................................................................................................................................................................... 24 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
..................................................GGGAGTATTGTCGCAAGGCT.................................................................................................................................................................................... 20 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
....TTGGCATCGATGATGGACGAAGACAT............................................................................................................................................................................................................................ 26 1 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0
.................TGGACGAAGACATGGACAAGATGGT................................................................................................................................................................................................................ 25 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0
....................................................GAGTATGGTCGCAAGGC..................................................................................................................................................................................... 17 2 9 0.89 8 0 0 2 2 4 0 0 0 0 0 0
...................................................GGAGTATGGCCGCAAGGC..................................................................................................................................................................................... 18 2 6 0.67 4 4 0 0 0 0 0 0 0 0 0 0
......................................................GTATGGCCGCAAGGCT.................................................................................................................................................................................... 16 1 2 0.50 1 0 0 0 1 0 0 0 0 0 0 0
....................................................GAGTATGGCCGCAAGGCTG................................................................................................................................................................................... 19 2 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0
........................................................................................................................CGAATCCCGTACGGACGCCA.............................................................................................................. 20 3 2 0.50 1 0 0 0 0 0 0 0 0 0 1 0
...................................................................................................................................................................................................TGGTGGTATAGCTGGAGATACT................................. 22 3 3 0.33 1 0 0 0 0 0 0 0 0 0 0 1
..................................................GGGAGTATGGCCGCAAGGCT.................................................................................................................................................................................... 20 2 3 0.33 1 0 0 0 0 0 0 0 1 0 0 0
..................................................GTGAGTATGGTCGCAAGG...................................................................................................................................................................................... 18 2 3 0.33 1 0 0 0 0 0 0 1 0 0 0 0
..................................................................................................................................................ACTCAGGCGCTGCAATCG...................................................................................... 18 2 4 0.25 1 1 0 0 0 0 0 0 0 0 0 0
..................................................GGGAGTATTGTCGCAAGGCC.................................................................................................................................................................................... 20 3 5 0.20 1 1 0 0 0 0 0 0 0 0 0 0
.................................................GGTGAGTATGGTCGCAAGGC..................................................................................................................................................................................... 20 3 5 0.20 1 1 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................TTCGACTGGTGGTGTTTT.............................................. 18 2 5 0.20 1 0 0 0 0 0 0 0 0 0 1 0
..................................AAGATGGTCAGATACCGT...................................................................................................................................................................................................... 18 2 6 0.17 1 1 0 0 0 0 0 0 0 0 0 0
...................................................GGAGTATTGTCGCAAGGC..................................................................................................................................................................................... 18 2 6 0.17 1 1 0 0 0 0 0 0 0 0 0 0
.............................................................................TCACCTCACTCTGCT.............................................................................................................................................................. 15 1 13 0.15 2 0 0 2 0 0 0 0 0 0 0 0
................ATGAACGAAGACATGCAC........................................................................................................................................................................................................................ 18 2 7 0.14 1 1 0 0 0 0 0 0 0 0 0 0
...................................................TGAGTATGGTCGCAAGGCC.................................................................................................................................................................................... 19 3 9 0.11 1 1 0 0 0 0 0 0 0 0 0 0
...................................................GGAGTATTGTCGCAAGG...................................................................................................................................................................................... 17 2 11 0.09 1 0 0 0 1 0 0 0 0 0 0 0
...................................................................................................................................................................GATGACAAAACGAAGACAACA.................................................................. 21 3 12 0.08 1 0 0 1 0 0 0 0 0 0 0 0
................................................................................................TAGAGTGGTGGAACCTCCA....................................................................................................................................... 19 3 14 0.07 1 0 0 0 0 1 0 0 0 0 0 0
.................................................................................................................................................................................................................................TGGGGGAGCTGTCGAAGGTG..... 20 3 14 0.07 1 0 0 0 0 0 0 1 0 0 0 0
...................................................................................................................................................................................................................................GAGGAGCAGTCGAAGG....... 16 1 17 0.06 1 0 0 0 0 0 0 1 0 0 0 0

Anti-sense strand reads

TTTCAACCGTCGCTACTACCTGCTTCTGTACCTGTTCTACCAGTCGATGTCACTCATAACGGCGTTCCGAAGCGGTGAGGGGAGTGAGACGAGTTGAGCTCACCACCGTGGGGGTTAGTTGCTTAGGGCATGTCTTAGGTGGCCAATGCGTCCGCGGCGTTAGCTGCTGTTTTGCGTCTGTGGTGAAAGCTGACCACCACCACATCGACCACAATGACCACCTTGACCTCCTCGTCGGCTTCCACGTCGA
**************************************************(((.((...(((....)))...))))).........(((((((...((((...(((((.((........(((.....)))...........((....))..)).)))))..)))).))......)))))(((((((.......)))))))************************************************** 		Read size # Mismatch Hit Count Total Norm Total M024
male body		 M023
head
 SRR553488
RT_0-2 hours eggs
 SRR553486
Makindu_3 day-old ovaries
 SRR618934
dsim w501 ovaries
..................................................................................................................................................................................................................................CCTCCTCGTCGGCTTCCACGTCG. 23 0 1 1.00 1 1 0 0 0 0
........................................................................................................................................AGGTGGCGAACCCGTCCGCGG............................................................................................. 21 3 3 0.33 1 0 0 1 0 0
.................................................................TCCGAAGCAGTGACTGGAGTG.................................................................................................................................................................... 21 3 3 0.33 1 0 1 0 0 0
..................................................................CCGAAGCAGTGACGGGAG...................................................................................................................................................................... 18 2 9 0.11 1 1 0 0 0 0
..................TCTGCGTCTGTACCTGGTCT.................................................................................................................................................................................................................... 20 3 10 0.10 1 0 0 0 1 0
...........................................................CGGAGTTCTGAAGCGTTGA............................................................................................................................................................................ 19 3 14 0.07 1 0 1 0 0 0
..............ACTTCCTGCTTCTGT............................................................................................................................................................................................................................. 15 1 20 0.05 1 0 0 0 0 1

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim2 x:6284143-6284392 - dsi_13150 AA--AGTTGGCAGCGATGATGG------------------------------ACGAAGACATGG---------ACAAGATGGTCAGCTACAGTGAGTATTGCCGCAAG---GCTTCGCCA---------CTC------------------CCCTCACTCTGCTCA----------------ACTCGAGT---GGTGGCAC---------C-----------------------------------------------------------CCCAATCAACGAATC------------CCGTAC------------AGAATCCACCGGTTACGCAGGCGCCGCAATCGACGA------------------------------CAAAACGC---AGACACCACTTTCG---------ACTGGTGGTG------------------------------------------------------------------GTGTAGCT------------------------------G---------GTG---TTACTGGTGGAACTGGA---------G---------------GAGCAGCCGA---AGGTGCAGCT
droSec2 scaffold_4:113893-114142 + AA--AGTTGGCAGCGATGATGG------------------------------ACGAAGACATGG---------ACAAGATGGTCAGCTACAGTGAGTATTGCCGCAAG---GCTTCGCCA---------CTC------------------CCCTCACTCTGCTCA----------------ACTCGAGT---GGTGGCAC---------C-----------------------------------------------------------CCCAATCAACGAATC------------CCGTAC------------AGAATCCACCGGTTACGCAGGCGCCGCAATCGACGA------------------------------CAAAACGC---AGACACCACTTTCG---------ACTGGTGGTG------------------------------------------------------------------GTGTAGCT------------------------------G---------GTG---TTGCTGGTGGAACTGGA---------G---------------GAGCAGCCGA---AGGTGCAGCT
dm3 chrX:6681184-6681433 - AA--AGTTGGCTGCGATGATGG------------------------------ACGAAGACATGG---------ACAAGATGGTCAGCTACAGTGAGTATTGCCGCAAG---GCTTCGCCA---------CTC------------------CCCTCACTCAGCTCA----------------ACTCGAGT---GGTGGCCC---------C-----------------------------------------------------------CCCAATCAACGAATC------------CCGTAC------------AGAATCCACCGGTTACGCAGGCGCCGCAATCGACGA------------------------------CAAAACGC---AGACACCACTTTCG---------ACTGGTGGTG------------------------------------------------------------------GTATAGCT------------------------------G---------GTG---TTGCTGGTGGAACTGGA---------G---------------GAGCAGGCGA---AGGTGTAGCT
droEre2 scaffold_4690:15609097-15609334 - AA--AGATGCCAGCGATGATGG------------------------------ACGAGGACATGG---------ACAAGTTGGTCAGCTACAGTGAGTATTGCCGCAGG---GCTTCGC---------------------------------------------CA----------------ATTCAAGT---GGTGGCGC---------C-----------------------------------------------------------CCCAATTAACGAATC------------CCGTAC------------AGAATCCACCGGTTACGCAGGCGCCGCAATCGAGGA------------------------------CAAAATGC---AGACACCACTTCCG---------ACTGGTGGTG------------------------T---------------------------------TGGC---GGTGGTGGC------------------------------G---------GTG---TTGTTGGTGGAACTGGA---------G---------------GAGCAGTCGA---AGGTGCAGCT
droYak3 X:2647117-2647366 - GA--AGATGCCAACGATGATGG------------------------------ACGAGGACATGG---------ACAAGATGGTCAGCTACAGTGAGTATTGCCGCAAG---GCTTCGCCA---------CTT------------------CCCTCACTTTGCTCA----------------ACTCAAGT---GGTGGCCC---------C-----------------------------------------------------------CCCAATCAACGAATT------------CCGTAC------------AGAATCCACCGGTTACGCAGGCGCCGCAGTCGAGGA------------------------------CAAAATGC---AGACACCACTTGCG---------ACTGGTGGTG------------------------------------------------------------------TTGGTGGT------------------------------G---------GTG---TTGTTGGCGGAACTGGA---------G---------------GAGCAGCCGA---AGGTGCAGCT
droEug1 scf7180000409095:7818-8049 - AA--AGATGGCGGCAATGATGG------------------------------ACGAGGACATGG---------ACAAGCTTGTCAGCTACAGTGAGTATTGTCGCAAC---GCTCCGCCG---------AAC------------------CCCTCACTCTGCTCA----------------ACTCAAGT---GGTGGCCC---------C-----------------------------------------------------------CCCAATCAACGAATC------------CCGTAC------------AGAACCCACC------------------ATGGAGGA------------------------------GAAAAGTC---AGTCATCGCTTCCG---------GTTGGTGCTG------------------------------------------------------------------GTGGTAGT------------------------------G---------TTG---GTGCTAGTGGAACTGGA---------G---------------GAGCAGCCGA---AGGTGGAGCT
droBia1 scf7180000301760:1925575-1925869 + AA--AGATACCGGGCATGCTGG------------------------------ACGAGGACATGG---------ACAAGCTGGTCAGCTACAGTGAGTATTGTCGCCGC---GCTGCGCCACCG------CCC------------------CCCTCACTCTGCCCA----------------ACCCAAGT---GGTGGCCC---------C-----------------------------------------------------------CACAACCAACGAATT------------CCGTAT------------AGAATCCACCGCTTACGCAGGCGCCGCCATGGAGGA------------------------------CAAAGTAC---AGGCACCCCAACCG---------ATCGGTGGTGGTGCTGGTATGGGTGG---AGGAGTTGCTAGT------------------------------------GCCAAT------------------------------G---------CTG---GTGCTGGCGCAACTGGAGGAGCTGGAGCAGCT------G---GAGCAGCCGA---GGGCGGAGCT
droTak1 scf7180000413955:145890-146118 - AA--AGATGCCCGGATTGATGGAC----AA--------------------CAACGAGGAGATGG---------ACAAGCTGGTCAGCTACAGTGAGTATTCTACC---------GCGCCG---------CTT------------------TCCACACTCCGCTCA----------------ACTCAAGT---GGTGGCCCCA-AC-CA-A-----------------------------------------------------------ACCAATCAACGAATT------------TCGTAC------------AG------------------GCGCCGCCATGGA---------------------------------------------GACACCGCTTCCGCTTCCG---ATCGGTGGTA------------------------A---------------------------------TGGT---GGTGTTGG------------------------------------------GA---ATGCTGCTGCCCCCGGA---------G---------------GAGG---------AGGAGCAGCT
droEle1 scf7180000491044:595570-595828 - AA--AGATGCCGGCGATGATGG------------------------------ACGAGGACATGG---------ACAAGCTGCTTAGCTACAGTGAGTATTGCGGCCAC---GCACCGCCG---------TTC------------------CCCTCACACTGCTCA----------------ACTCAAGT---GGTGATCC-A-AC-CACC-----------------------------------------------------------CTCAACCAACGAATC------------CCGTAC------------AGAAACC---------------------ATGGAGGA------------------------------CAAAATGC---AGACACCACTTTCG---------GTTGGTGGTGGTGCTGG---------------------------------------------------TAGTGCTGGTAGTGCT------------------------------G---GTACTGGTTCTTCTGCTGGTGGAACTGGA---------G---------------GAGCAGCCGA---TGGCGTAACT
droRho1 scf7180000776942:275801-276056 - AA--AGATGCCGGCGATGATGG------------------------------ACGAGGACATGG---------ACAAGCTGGTCAGCTACAGTGAGTATTGTCGCAAC---GCTCCGCCG---------CTC------------------CCCTCACTCTGCTCA----------------ACTCAAGT---GGTGGCCC---------C-----------------------------------------------------------CCCAACCAACGAATC------------CCGTAC------------AAAATCCATCGGTTATGCAGGCGCCGCCATGGAGGA------------------------------CAAAATGC---AGGCACCACTTTCG---------GTTGGTGGTG------------------------C---------------------------------TGCC---GGTGCTGGT------------------------------G---------CTG---GTGCTGGTGGAACTGGA---------G---------------GAGCTGCCGA---TGGCGGAGCT
droFic1 scf7180000454072:727562-727856 + AA--AGATGCCGGCGATGCTGG------------------------------CCGAGGACATGG---------AGAAGCTGGTCAGCTACAGTGAGTATTGTCGCGGC---GCTCCGCCGCCG-------AC------------------T------GCTGGTCAGCACCGGTCGTCGACTGGTCAAGG---TTCGGCCG---------C-----------------------------------------------------------CACGTCCAACGAATC------------CCGCGC------------AGAA------------------GCCGCCATCGAGGA------------------------------CAAGGCGCAGCAGACAGCCCTCCTG---------CTTGGTGGCGGTAATCCGGGGGCCGT---TCCTGTTTTTAGTTCCTGTTCCG-----------GTGC-ATC------TGCAACT------------------------------G---------CAT---CTGCATCTGGATCTGGA---------G---------------GAGTTGGCGATGCAGGAGGCGTC
droKik1 scf7180000302610:385595-385864 - GG--AGACATTGGA------------------------------------------------GA---------GCAAGCTGATCAGCCACAGTGAGTATAACCGCCAT---GAAACGCCAACGACGACGACA------------------ACAACAACAACACCC----------------ACTCCCGT---GGTGGTTA---------C-----------------------------------------------------------CCCA---AACGAATC------------CCTTACGAAAAC------AGAAACTAC------------------AGAAGCTACCGAGGCAATAA---------------CATCG------------------AATGCG---------AATGCTGGCGGAGCAGG---------AGCAGGAG---------------CAG-----------TCAC-TGCCGCA------------------GCAGCAGCAGCAGCACCTACTGGTGGTGGTGGTG---TTACAGGTGG---TG---------------------------GAGAAGCC-A---ACACGGAGCT
droAna3 scaffold_13117:4471460-4471712 - AA--AGATGCCGCCAGCCCTCG------------------------------ACCAGGACATGGATGGCGGCGATAAGATACTGAGCTATAGTGAGTATTCCATCCGCAATCGTCTGTCA---------GAT------------------G------GTTCCTCA--ATC-----------ACTCAACT---GGTGGCCG---ACCT--T-----------------------------------------------------------CCCAATCCAC-------------------ATCCACAAACGCGTTTAGAAGG------------------CGAAATGGC---------------------------------CAGCATAC---CGGTTACAGTTATG---------GCTGGAGGAC------------------------A---------------------------------AGGA------------------------------------------------------G---GATCTGGAGGATCAGGA---------CATCCAGACGGAGGAGGAGGAACT-A---C--CACTACT
droBip1 scf7180000395928:29696-29972 + CG--ACCTGGACGTGGACGTGG------------------------------ACGGACACGGC------GGCGACAAGATACTGAGCTACAGTGAGTATTCCAGCCACAG-CCATCGGCC---------CGC------------------T-----GTTGCCTCG----------------ACTCAAGCCTCGGTGGCCTCCGACC---T-----------------------------------------------------------TCCCACTCCCCAACC------------ACGTTT------------AGAAGGC------------------GAACTGGCCAGCCTGCCGGTCG------------------------------------CGGTGGTG------GCCGCTGCTGGAGGACAAGC---------ACCCGGAC---------------ATGGACTCGGGACGACAGAGG------CTGCATCT------------------------------G---------GTG---GCGCTGCGGTGACGGCT---------G---------------GTGGCGGGGA---AAGTAACACG
dp5 XL_group1a:6506486-6506864 - AAGCAGACAGTGAAGCTGATGG------------------------------AGGAGGATGCGG---------ACAAGATGATTAGCTACAGTGAGTATTGGATCC---------CAT---------CA---ATGATCCCTCGATCCGTATCCACATTCTGCTCA----------------ACTCAAGT---GGCGGCAT---------CTCCTCCTCTCTCTCTCTCTCTCTCTCTCTCTCCTGTCTACCTCCCAACAACCCCTCCCCGCCGATTAACCAAATCCCACATATCCCACATAC------------AGACGCCGCCGGGTCCGCAAGCGCTGCGGCACAGGA------AATGGTCATGGCCCAGGCACCATCCAATGCGC---AGACACTGCTCCCA---------GGAACAGGAG------------------------TCCCAGGC------CCAG-----------GCCC-AGGCGCAAGTGGAGCA------------------------------G---------GTG---CTGGTGCAGGAGGTGGA---------G---------------GGGAAACT-A---ACACGGAGCT
droPer2 scaffold_25:808487-808861 + AG--ACATT--GAAGCTGATGG------------------------------AGGAGGATGCGG---------ACAAGTTGATTAGCTACAGTGAGTATTGGATCC---------CAT---------CA---ATGATCCCTCGATCCATATCCACATTCTGCTCA----------------ACTCAAGT---GGCGGCAT---------CTCCTCCTCTCTCTCTCTCTCTCTCACTCTCTCCTGTCAACCTCCCAACAACCCCACCCCGCCCCTTAACCACATCCCACATATCCCACATAC------------AGAAGCCGCCGGGTCCGCAAGCGCTGCTGCACAGGA------AATGGTCATGGCCCAGGCACCATCCAATGCGC---AGACACTGCTCCCA---------GGAACAGGAG------------------------TCCCAGGC------CCAG-----------GCCC-AGGCGCAAGTGGAGCA------------------------------G---------GTG---CAGGTGCAGGAGGTGGA---------G---------------GGGAAACT-A---ACACGGAGCT
droWil2 scf2_1100000004909:7980698-7980923 + AA--TGAAATCAACAGCGGCAA------AACAATCACTTCATCAG---CTCGATGACGATGTGG---------ATAAATTAATTAGCTACAGTGAGTATTGTACA-AC---CATTGAC------------------------------------CATTTAGCACA----------------ATCCAATT----CCGACTC---------C-----------------------------------------------------------CACAA-------------------------TGC------------AGAAACA------------------ACAATGGATACAAAGGCAATGG------------------------------------CATCTATG---------GCCAATGCAG------------------------------------------------------------------GTGCCACCGCTGCCCAAATGTCAGG-------------G---------CCG---TTGCCG-----------------------------------------GCAGG---AGGTGCTGCT
droVir3 scaffold_12928:4046273-4046329 - AC--CATCA--------GTTGG------------------------------ACGACGACGTGG---------ACAAACTGATCAGCTACAGTGAGTGCC--CGCAAG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droMoj3 scaffold_6359:635685-635753 - AC--CATCAGCAGCATCAACAG--------------------------CTGGACGACGATGTCG---------ACAAGCTCATCAGCTACAGTGAGTATCC--GCTAG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droGri2 scaffold_14853:620276-620362 + AACGAGACAACAACAACAACAA--CAGCAGCAGATGCACCATCATCTCGCAGTTGACGATGTGG---------ACAAGCTGATCAGTTACAGTGAGTA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
AA--AGTTGGCAGCGATGATGG------------------------------ACGAAGACATGG---------ACAAGATGGTCAGCTACAGTGAGTATTGCCGCAAG---GCTTCGCCA---------CTC------------------CCCTCACTCTGCTCA----------------ACTCGAGT---GGTGGCAC---------C-----------------------------------------------------------CCCAATCAACGAATC------------CCGTAC------------AGAATCCACCGGTTACGCAGGCGCCGCAATCGACGA------------------------------CAAAACGC---AGACACCACTTTCG---------ACTGGTGGTG------------------------------------------------------------------GTGTAGCT------------------------------G---------GTG---TTACTGGTGGAACTGGA---------G---------------GAGCAGCCGA---AGGTGCAGCTSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
...........................................................................................GTGAGTATTGCCGCAAG---GCTTCGC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.00100000000001000000
.................GATGG------------------------------ACGAAGACATGG---------AC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00100100000000000000
....................GG------------------------------ACGAAGACATGG---------ACAAGATGGTCAGC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.00100010000000000000
..............GATGATGG------------------------------ACGAAGACATGG---------ACAAGAT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.00101000000000000000
..............GATGATGG------------------------------ACGAAGACAT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.00101000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................GTG------------------------------------------------------------------GTGTAGCT------------------------------G---------GTG---TTACTGGT.........................................................2311.00100000000000100000
..................ATGG------------------------------ACGAAGACATGG---------ACAA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00110000000000000000
.....GTTGGCAGCGATGATGG------------------------------ACGAAGA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.00101000000000000000
...................TGG------------------------------ACGAAGACATGG---------ACAAGATGGT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.00100000001000000000
droSec2
AA--AGTTGGCAGCGATGATGG------------------------------ACGAAGACATGG---------ACAAGATGGTCAGCTACAGTGAGTATTGCCGCAAG---GCTTCGCCA---------CTC------------------CCCTCACTCTGCTCA----------------ACTCGAGT---GGTGGCAC---------C-----------------------------------------------------------CCCAATCAACGAATC------------CCGTAC------------AGAATCCACCGGTTACGCAGGCGCCGCAATCGACGA------------------------------CAAAACGC---AGACACCACTTTCG---------ACTGGTGGTG------------------------------------------------------------------GTGTAGCT------------------------------G---------GTG---TTGCTGGTGGAACTGGA---------G---------------GAGCAGCCGA---AGGTGCAGCTSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................G---------GTG---TTGCTGGTGGAACTGGA---------G---------------.......................2211.0010100
....AGTTGGCAGCGATGATGG------------------------------ACGAA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010010
AA--AGTTGGCAGCGATGATG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010010
AA--AGTTGGCAGCGATGATGG------------------------------A............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010010
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T------------------------------G---------GTG---TTGCTGGTGGAACT...................................................1911.0010001
AA--AGTTGGCAGCGATGATGG------------------------------ACGAAGA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010100
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAGCT------------------------------G---------GTG---TTGCTGGTGGAACT...................................................2411.0010100
dm3
AA--AGTTGGCTGCGATGATGG------------------------------ACGAAGACATGG---------ACAAGATGGTCAGCTACAGTGAGTATTGCCGCAAG---GCTTCGCCA---------CTC------------------CCCTCACTCAGCTCA----------------ACTCGAGT---GGTGGCCC---------C-----------------------------------------------------------CCCAATCAACGAATC------------CCGTAC------------AGAATCCACCGGTTACGCAGGCGCCGCAATCGACGA------------------------------CAAAACGC---AGACACCACTTTCG---------ACTGGTGGTG------------------------------------------------------------------GTATAGCT------------------------------G---------GTG---TTGCTGGTGGAACTGGA---------G---------------GAGCAGGCGA---AGGTGTAGCTSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
........................................................................................................................................................................................................................................................................................................................................ACGCAGGCGCCGCAATCT.......................................................................................................................................................................................................................................................................1814.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTGGAACTGGA---------G---------------GAGCAGGC...............2114.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000010000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCTGGTGGAACTGGA---------G---------------GAGC...................2114.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010
.....................................................CGAAGACATGG---------ACAAGATGGT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2113.0030000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020
..............GATGATGG------------------------------ACGAAGACATGG---------AC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2213.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000010000000000000000000000000000
.................GATGG------------------------------ACGAAGACATGG---------ACAAGATGG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2613.0030000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGCTGGTGGAACTGGA---------G---------------GAGCA..................2312.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000
.............................................................TGG---------ACAAGATGGTCAGCT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1812.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................GCGCCGCAATCGACGA------------------------------CAA..................................................................................................................................................................................................................................1912.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................AC------------AGAATCCACCGGTTACGCAGGCGC...............................................................................................................................................................................................................................................................................2612.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................GA------------------------------CAAAACGC---AGACACCACTTTC.............................................................................................................................................................................................................2312.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................TGATGG------------------------------ACGAAGACATGG---------ACAAGATG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2612.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....GTTGGCTGCGATGATGG------------------------------ACGAAGACA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2612.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000011000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................TTCG---------ACTGGTGGTG------------------------------------------------------------------GTATAG.................................................................................................................2012.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCT------------------------------G---------GTG---TTGCTGGTGGAACTGGA---------G---------------GA.....................2712.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................ATGG---------ACAAGATGGTCAGCTAC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATAGCT------------------------------G---------GTG---TTGCTGGTG........................................................2012.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................AAACGC---AGACACCACTTTCG---------AC.................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................TCA----------------ACTCGAGT---GGTGGCCC---------................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGGTGGAACTGGA---------G---------------GAGCAGGC...............2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGCTGGTGGAACTGGA---------G---------------GAG....................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAGGCGA---AGGTGTAGC.1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000
............................................................ATGG---------ACAAGATGGTCAGCTACAGC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................G---TTGCTGGTGGAACTGGA---------G---------------GAGC...................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000
.......TGGCTGCGATGATGG------------------------------ACG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....GTTGGCTGCGATGATGG------------------------------AC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................GA------------------------------CAAAACGC---AGACACCAC.................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
.........................................................................ACAAGATGGTCAGCTACAGTT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................AAGACATGG---------ACAAGATGGT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................GGTG------------------------------------------------------------------GTATAGCT------------------------------G---------GTG---TTGC.............................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAGCT------------------------------G---------GTG---TTGCTGGTGGA......................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAGCT------------------------------G---------GTG---TTGCTGGTGGAACTG..................................................2411.0010000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................ATGG------------------------------ACGAAGACATGG---------ACAAGATGGTC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCT------------------------------G---------GTG---TTGCTGGTGGAACTGGA---------.......................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................CATGG---------ACAAGATGGTCAGCTA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000
................TGATGG------------------------------ACGAAGACATGG---------ACA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................AATCGACGA------------------------------CAAAACGC---AGAC......................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............ATGATGG------------------------------ACGAAGACAT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAACTGGA---------G---------------GAGCAGGCGA---AGGTGTA...2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................TGG------------------------------ACGAAGACATGG---------ACAAGATG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................AATCAACGAATC------------CCGTAC------------AGAATCCACCG............................................................................................................................................................................................................................................................................................2911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000
............................................................................AGATGGTCAGCTACAGC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAGCT------------------------------G---------GTG---TTGCTGGTGGAACT...................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................TACGCAGGCGCCGCAATC........................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
...................TGG------------------------------ACGAAGACATGG---------ACAAGATGGTCA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................GACGA------------------------------CAAAACGC---AGACACC...................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAGCT------------------------------G---------GTG---TTGCTGGTGG.......................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................ACATGG---------ACAAGATGGTCAGCTAC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGAACTGGA---------G---------------GAGCAGGCGA---..........2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......TGGCTGCGATGATGG------------------------------ACGAAGACAT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................ACATGG---------ACAAGATGGTCA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................GACATGG---------ACAAGATGGTCAGCTACA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............GATGATGG------------------------------ACGAAGACATGG---------ACAAGA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T------------------------------G---------GTG---TTGCTGGTGGAACT...................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010
....................................................ACGAAGACATGG---------ACAAGATGGTCAGT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000
AA--AGTTGGCTGCGATGATGG------------------------------AC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
.....................................................CGAAGACATGG---------ACAAGATGG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAGCT------------------------------G---------GTG---TTGCTGGT.........................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000
......................................................GAAGACATGG---------ACAAGATGGTCAGC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
.........................................................GACATGG---------ACAAGATGGTCA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAGCT------------------------------G---------GTG---TTGCTGGTGGAA.....................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................GATGG------------------------------ACGAAGACATGG---------A.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CT------------------------------G---------GTG---TTGCTGGTGGAACTGG.................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000
....................................................................................................................................................................................................................................................................................................................................................................................................................................GGTG------------------------------------------------------------------GTATAGCT------------------------------G---------GTG---TTGCTGGT.........................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTGGAACTGGA---------G---------------GAGCAGGCGA---..........2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................TCG---------ACTGGTGGTG------------------------------------------------------------------GTATAGCT------------------------------G---------GTG---A................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................TGATGG------------------------------ACGAAGACATGG---------ACAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................G---TTGCTGGTGGAACTGGA---------G---------------.......................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................GTG------------------------------------------------------------------GTATAGCT------------------------------G---------GTG---TTGCTGGTGG.......................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGAACTGGA---------G---------------GAGCAGGCGA---AGGT......2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droEre2
AA--AGATGCCAGCGATGATGG------------------------------ACGAGGACATGG---------ACAAGTTGGTCAGCTACAGTGAGTATTGCCGCAGG---GCTTCGC---------------------------------------------CA----------------ATTCAAGT---GGTGGCGC---------C-----------------------------------------------------------CCCAATTAACGAATC------------CCGTAC------------AGAATCCACCGGTTACGCAGGCGCCGCAATCGAGGA------------------------------CAAAATGC---AGACACCACTTCCG---------ACTGGTGGTG------------------------T---------------------------------TGGC---GGTGGTGGC------------------------------G---------GTG---TTGTTGGTGGAACTGGA---------G---------------GAGCAGTCGA---AGGTGCAGCTSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
.A--AGATGCCAGCGATGATG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000010
...........AGCGATGATGG------------------------------ACGAGGACATG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000100
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAACTGGA---------G---------------GAGCAGTCGA---AGGT......2311.0011000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................G---TTGTTGGTGGAACTGGA---------G---------------GAGC...................2311.0010100000
droYak3
GA--AGATGCCAACGATGATGG------------------------------ACGAGGACATGG---------ACAAGATGGTCAGCTACAGTGAGTATTGCCGCAAG---GCTTCGCCA---------CTT------------------CCCTCACTTTGCTCA----------------ACTCAAGT---GGTGGCCC---------C-----------------------------------------------------------CCCAATCAACGAATT------------CCGTAC------------AGAATCCACCGGTTACGCAGGCGCCGCAGTCGAGGA------------------------------CAAAATGC---AGACACCACTTGCG---------ACTGGTGGTG------------------------------------------------------------------TTGGTGGT------------------------------G---------GTG---TTGTTGGCGGAACTGGA---------G---------------GAGCAGCCGA---AGGTGCAGCTSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
.......TGCCAACGATGATGG------------------------------ACGAGGAC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2312.00200000000002
..................................................................................................................................................................................................................................................................................................................................................................................................GC---AGACACCACTTGCG---------ACTG...............................................................................................................................................................................................2011.00101000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................G---TTGTTGGCGGAACTGGA---------G---------------GA.....................2111.00100000010000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAACTGGA---------G---------------GAGCAGCCGA---AGGT......2411.00100000010000
......ATGCCAACGATGATGG------------------------------ACGAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100000010000
..................................................................................................................................................................................................................................................................................................................................................CGCAGTCGAGGA------------------------------CAAAATGC---AGA.......................................................................................................................................................................................................................2311.00101000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................AGACACCACTTGCG---------ACTGGT.............................................................................................................................................................................................2011.00101000000000
............................................................................................................................................................................................................................................................................................................................................................................................CAAAATGC---AGACACCACTTGCG---------ACTGGT.............................................................................................................................................................................................2811.00100000010000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................G---TTGTTGGCGGAACTGGA---------G---------------G......................2011.00101000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCGGAACTGGA---------G---------------GAGCAGCCGA---AGGT......2711.00100000010000
........GCCAACGATGATGG------------------------------ACGAGG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00100100000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCGGAACTGGA---------G---------------GAGCAGCCGA---AGG.......2611.00100000010000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................G---------GTG---TTGTTGGCGGAACTGGA---------G---------------GAGCAG.................2811.00110000000000
.................GATGG------------------------------ACGAGGACATGG---------ACAAGATGGT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.00100000010000
droEug1
AA--AGATGGCGGCAATGATGG------------------------------ACGAGGACATGG---------ACAAGCTTGTCAGCTACAGTGAGTATTGTCGCAAC---GCTCCGCCG---------AAC------------------CCCTCACTCTGCTCA----------------ACTCAAGT---GGTGGCCC---------C-----------------------------------------------------------CCCAATCAACGAATC------------CCGTAC------------AGAACCCACC------------------ATGGAGGA------------------------------GAAAAGTC---AGTCATCGCTTCCG---------GTTGGTGCTG------------------------------------------------------------------GTGGTAGT------------------------------G---------TTG---GTGCTAGTGGAACTGGA---------G---------------GAGCAGCCGA---AGGTGGAGCTSizeHit CountTotal NormTotal
No Reads
droBia1
AA--AGATACCGGGCATGCTGG------------------------------ACGAGGACATGG---------ACAAGCTGGTCAGCTACAGTGAGTATTGTCGCCGC---GCTGCGCCACCG------CCC------------------CCCTCACTCTGCCCA----------------ACCCAAGT---GGTGGCCC---------C-----------------------------------------------------------CACAACCAACGAATT------------CCGTAT------------AGAATCCACCGCTTACGCAGGCGCCGCCATGGAGGA------------------------------CAAAGTAC---AGGCACCCCAACCG---------ATCGGTGGTGGTGCTGGTATGGGTGG---AGGAGTTGCTAGT------------------------------------GCCAAT------------------------------G---------CTG---GTGCTGGCGCAACTGGAGGAGCTGGAGCAGCT------G---GAGCAGCCGA---GGGCGGAGCTSizeHit CountTotal NormTotal
No Reads
droTak1
AA--AGATGCCCGGATTGATGGAC----AA--------------------CAACGAGGAGATGG---------ACAAGCTGGTCAGCTACAGTGAGTATTCTACC---------GCGCCG---------CTT------------------TCCACACTCCGCTCA----------------ACTCAAGT---GGTGGCCCCA-AC-CA-A-----------------------------------------------------------ACCAATCAACGAATT------------TCGTAC------------AG------------------GCGCCGCCATGGA---------------------------------------------GACACCGCTTCCGCTTCCG---ATCGGTGGTA------------------------A---------------------------------TGGT---GGTGTTGG------------------------------------------GA---ATGCTGCTGCCCCCGGA---------G---------------GAGG---------AGGAGCAGCTSizeHit CountTotal NormTotal
No Reads
droEle1
AA--AGATGCCGGCGATGATGG------------------------------ACGAGGACATGG---------ACAAGCTGCTTAGCTACAGTGAGTATTGCGGCCAC---GCACCGCCG---------TTC------------------CCCTCACACTGCTCA----------------ACTCAAGT---GGTGATCC-A-AC-CACC-----------------------------------------------------------CTCAACCAACGAATC------------CCGTAC------------AGAAACC---------------------ATGGAGGA------------------------------CAAAATGC---AGACACCACTTTCG---------GTTGGTGGTGGTGCTGG---------------------------------------------------TAGTGCTGGTAGTGCT------------------------------G---GTACTGGTTCTTCTGCTGGTGGAACTGGA---------G---------------GAGCAGCCGA---TGGCGTAACTSizeHit CountTotal NormTotal
No Reads
droRho1
AA--AGATGCCGGCGATGATGG------------------------------ACGAGGACATGG---------ACAAGCTGGTCAGCTACAGTGAGTATTGTCGCAAC---GCTCCGCCG---------CTC------------------CCCTCACTCTGCTCA----------------ACTCAAGT---GGTGGCCC---------C-----------------------------------------------------------CCCAACCAACGAATC------------CCGTAC------------AAAATCCATCGGTTATGCAGGCGCCGCCATGGAGGA------------------------------CAAAATGC---AGGCACCACTTTCG---------GTTGGTGGTG------------------------C---------------------------------TGCC---GGTGCTGGT------------------------------G---------CTG---GTGCTGGTGGAACTGGA---------G---------------GAGCTGCCGA---TGGCGGAGCTSizeHit CountTotal NormTotal
No Reads
droFic1
AA--AGATGCCGGCGATGCTGG------------------------------CCGAGGACATGG---------AGAAGCTGGTCAGCTACAGTGAGTATTGTCGCGGC---GCTCCGCCGCCG-------AC------------------T------GCTGGTCAGCACCGGTCGTCGACTGGTCAAGG---TTCGGCCG---------C-----------------------------------------------------------CACGTCCAACGAATC------------CCGCGC------------AGAA------------------GCCGCCATCGAGGA------------------------------CAAGGCGCAGCAGACAGCCCTCCTG---------CTTGGTGGCGGTAATCCGGGGGCCGT---TCCTGTTTTTAGTTCCTGTTCCG-----------GTGC-ATC------TGCAACT------------------------------G---------CAT---CTGCATCTGGATCTGGA---------G---------------GAGTTGGCGATGCAGGAGGCGTCSizeHit CountTotal NormTotal
No Reads
droKik1
GG--AGACATTGGA------------------------------------------------GA---------GCAAGCTGATCAGCCACAGTGAGTATAACCGCCAT---GAAACGCCAACGACGACGACA------------------ACAACAACAACACCC----------------ACTCCCGT---GGTGGTTA---------C-----------------------------------------------------------CCCA---AACGAATC------------CCTTACGAAAAC------AGAAACTAC------------------AGAAGCTACCGAGGCAATAA---------------CATCG------------------AATGCG---------AATGCTGGCGGAGCAGG---------AGCAGGAG---------------CAG-----------TCAC-TGCCGCA------------------GCAGCAGCAGCAGCACCTACTGGTGGTGGTGGTG---TTACAGGTGG---TG---------------------------GAGAAGCC-A---ACACGGAGCTSizeHit CountTotal NormTotal
No Reads
droAna3
AA--AGATGCCGCCAGCCCTCG------------------------------ACCAGGACATGGATGGCGGCGATAAGATACTGAGCTATAGTGAGTATTCCATCCGCAATCGTCTGTCA---------GAT------------------G------GTTCCTCA--ATC-----------ACTCAACT---GGTGGCCG---ACCT--T-----------------------------------------------------------CCCAATCCAC-------------------ATCCACAAACGCGTTTAGAAGG------------------CGAAATGGC---------------------------------CAGCATAC---CGGTTACAGTTATG---------GCTGGAGGAC------------------------A---------------------------------AGGA------------------------------------------------------G---GATCTGGAGGATCAGGA---------CATCCAGACGGAGGAGGAGGAACT-A---C--CACTACTSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
AA--AGATGCCGCCAGCCCTCG------------------------------ACC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001010000
..........................................................................................................................................................................................ACT---GGTGGCCG---ACCT--T-----------------------------------------------------------CCCAATCCA...........................................................................................................................................................................................................................................................................................................................................2511.001100000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGA---------CATCCAGACGGAGGAGGAGG...................2311.001100000
droBip1
CG--ACCTGGACGTGGACGTGG------------------------------ACGGACACGGC------GGCGACAAGATACTGAGCTACAGTGAGTATTCCAGCCACAG-CCATCGGCC---------CGC------------------T-----GTTGCCTCG----------------ACTCAAGCCTCGGTGGCCTCCGACC---T-----------------------------------------------------------TCCCACTCCCCAACC------------ACGTTT------------AGAAGGC------------------GAACTGGCCAGCCTGCCGGTCG------------------------------------CGGTGGTG------GCCGCTGCTGGAGGACAAGC---------ACCCGGAC---------------ATGGACTCGGGACGACAGAGG------CTGCATCT------------------------------G---------GTG---GCGCTGCGGTGACGGCT---------G---------------GTGGCGGGGA---AAGTAACACGSizeHit CountTotal NormTotal
No Reads
dp5
AAGCAGACAGTGAAGCTGATGG------------------------------AGGAGGATGCGG---------ACAAGATGATTAGCTACAGTGAGTATTGGATCC---------CAT---------CA---ATGATCCCTCGATCCGTATCCACATTCTGCTCA----------------ACTCAAGT---GGCGGCAT---------CTCCTCCTCTCTCTCTCTCTCTCTCTCTCTCTCCTGTCTACCTCCCAACAACCCCTCCCCGCCGATTAACCAAATCCCACATATCCCACATAC------------AGACGCCGCCGGGTCCGCAAGCGCTGCGGCACAGGA------AATGGTCATGGCCCAGGCACCATCCAATGCGC---AGACACTGCTCCCA---------GGAACAGGAG------------------------TCCCAGGC------CCAG-----------GCCC-AGGCGCAAGTGGAGCA------------------------------G---------GTG---CTGGTGCAGGAGGTGGA---------G---------------GGGAAACT-A---ACACGGAGCTSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
...............................................................................................................................................................................................................................................CTCCTGTCTACCTCCCAACAA.............................................................................................................................................................................................................................................................................................................................................................2111.0010100000000
..............................................................GG---------ACAAGATGATTAGCTAC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000010000
droPer2
AG--ACATT--GAAGCTGATGG------------------------------AGGAGGATGCGG---------ACAAGTTGATTAGCTACAGTGAGTATTGGATCC---------CAT---------CA---ATGATCCCTCGATCCATATCCACATTCTGCTCA----------------ACTCAAGT---GGCGGCAT---------CTCCTCCTCTCTCTCTCTCTCTCTCACTCTCTCCTGTCAACCTCCCAACAACCCCACCCCGCCCCTTAACCACATCCCACATATCCCACATAC------------AGAAGCCGCCGGGTCCGCAAGCGCTGCTGCACAGGA------AATGGTCATGGCCCAGGCACCATCCAATGCGC---AGACACTGCTCCCA---------GGAACAGGAG------------------------TCCCAGGC------CCAG-----------GCCC-AGGCGCAAGTGGAGCA------------------------------G---------GTG---CAGGTGCAGGAGGTGGA---------G---------------GGGAAACT-A---ACACGGAGCTSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................G---CAGGTGCAGGAGGTGGA---------G---------------GGGAA..................2411.001000001
droWil2
AA--TGAAATCAACAGCGGCAA------AACAATCACTTCATCAG---CTCGATGACGATGTGG---------ATAAATTAATTAGCTACAGTGAGTATTGTACA-AC---CATTGAC------------------------------------CATTTAGCACA----------------ATCCAATT----CCGACTC---------C-----------------------------------------------------------CACAA-------------------------TGC------------AGAAACA------------------ACAATGGATACAAAGGCAATGG------------------------------------CATCTATG---------GCCAATGCAG------------------------------------------------------------------GTGCCACCGCTGCCCAAATGTCAGG-------------G---------CCG---TTGCCG-----------------------------------------GCAGG---AGGTGCTGCTSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
................................................................................................................................................................................................................................................................................................................................A------------------ACAATGGATACAAAGGCAATG.........................................................................................................................................................................................................................................................2211.00100010
..........................................CAG---CTCGATGACGATGTGG---------A.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00100100
..........................................CAG---CTCGATGACGATGTG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.00100010
..........................................CAG---CTCGATGACGATGTGG---------ATAA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.00100010
droVir3
AC--CATCA--------GTTGG------------------------------ACGACGACGTGG---------ACAAACTGATCAGCTACAGTGAGTGCC--CGCAAG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
.....................................................CGACGACGTGG---------ACAAACTGATCAGC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.001001000000000000000000000000000000000000000000000000000000000000
..................TTGG------------------------------ACGACGACGTGG---------AC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.001001000000000000000000000000000000000000000000000000000000000000
...........................................................................AAACTGATCAGCTACAGCTT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.051000000000000000100000000000000000000000000000000000000000000000
droMoj3
AC--CATCAGCAGCATCAACAG--------------------------CTGGACGACGATGTCG---------ACAAGCTCATCAGCTACAGTGAGTATCC--GCTAG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
..............ATCAACAG--------------------------CTGGACGACGATGTCG---------A.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.001000001
droGri2
AACGAGACAACAACAACAACAA--CAGCAGCAGATGCACCATCATCTCGCAGTTGACGATGTGG---------ACAAGCTGATCAGTTACAGTGAGTA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
................................................GCAGTTGACGATGTGG---------ACA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00110
............ACAACAACAA--CAGCAGCAGA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.05101

Generated: 05/19/2015 at 12:06 AM