dsi_13144

Name	Class	Family	Strand
TART_DV	LINE	Jockey	-

CAACCAGAAAAGATTGGACTACTTCCACCAGAAAGAGGAGGAGCTCTCGGGTCTGCAGGGCCAGCAGCTAACCCAACTTCAGAGGGAGCTCTCCAACCAGCAACAGAGTCTCCTGAGCCAACAGCAGCTGCAGCAATCCAAGTTGTTACAACTGCAGCAGTGCGTCCAGAGCCAAGAGTTGCAGCAACAGATGCAGCATCTCACCCAGAAGTCACAACAGCAACCTCCTCAAGCTAATCAACAGCAGCAA ************************************************************************************************...........(((..((((.....((.(((((((((((....))))......))))))).)))).))..)))..***************************************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M024 male body	M025 embryo	M023 head	SRR553487 NRT_0-2 hours eggs	GSM343915 embryo	SRR553488 RT_0-2 hours eggs	SRR618934 dsim w501 ovaries
.........................................AGCTCTCGGGTCTGCAGGGCC............................................................................................................................................................................................	21	0	1	1.00	1	1	0	0	0	0	0	0
..................................................................................................AGCAACAGAGTCTCCTGAGCC...................................................................................................................................	21	0	1	1.00	1	0	0	1	0	0	0	0
..............................................................................TCAGAGGGAGCTCTCCAACCAGCA....................................................................................................................................................	24	0	1	1.00	1	1	0	0	0	0	0	0
......................................................................................................................................................ACTGCAGCAGTGCGTCCAGAGCC.............................................................................	23	0	1	1.00	1	0	0	0	0	1	0	0
.......................................GGAGCTCTCGGGTCTGCAGGGCC............................................................................................................................................................................................	23	0	1	1.00	1	0	1	0	0	0	0	0
.................................................................................GAGGGAGCTCTCCAACCAGC.....................................................................................................................................................	20	0	1	1.00	1	0	0	0	1	0	0	0
..........TGCTTGGACTACCTCCACCA............................................................................................................................................................................................................................	20	3	10	0.10	1	0	1	0	0	0	0	0
..............................................................................................................................................................................................................................ACCTAATCAAGCTAATC...........	17	2	20	0.05	1	0	0	0	0	0	0	1
......................................................................................................................................................................................................TCTCACCCAGAAGGCAA...................................	17	2	20	0.05	1	0	0	0	0	0	1	0

GTTGGTCTTTTCTAACCTGATGAAGGTGGTCTTTCTCCTCCTCGAGAGCCCAGACGTCCCGGTCGTCGATTGGGTTGAAGTCTCCCTCGAGAGGTTGGTCGTTGTCTCAGAGGACTCGGTTGTCGTCGACGTCGTTAGGTTCAACAATGTTGACGTCGTCACGCAGGTCTCGGTTCTCAACGTCGTTGTCTACGTCGTAGAGTGGGTCTTCAGTGTTGTCGTTGGAGGAGTTCGATTAGTTGTCGTCGTT ***************************************************************************...........(((..((((.....((.(((((((((((....))))......))))))).)))).))..)))..************************************************************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	SRR618934 dsim w501 ovaries	SRR553485 Chicharo_3 day-old ovaries	M023 head	SRR553488 RT_0-2 hours eggs
............................................................................GAAGTCTGCTTCGAGAGGTTG.........................................................................................................................................................	21	2	1	1.00	1	1	0	0	0
........TTTCTCACCTGATGAAGCT...............................................................................................................................................................................................................................	19	2	2	0.50	1	0	1	0	0
.....................................................................................................................................................................................................................................GTTCGATGAGTTGTC......	15	1	6	0.17	1	1	0	0	0
...............CCTGATGACGTCGGTCTTTC.......................................................................................................................................................................................................................	20	3	8	0.13	1	0	0	1	0
.....................................................................................................................GGATGTCGTCGACGTCG....................................................................................................................	17	1	12	0.08	1	1	0	0	0
.........................................................................................AGAGGTTGGTCGTAG..................................................................................................................................................	15	1	12	0.08	1	1	0	0	0
............................................AGAGCCGATGCGTCCCGGT...........................................................................................................................................................................................	19	3	14	0.07	1	1	0	0	0
.............................................................................................................................................................................................................................TTGGAGGAGTTCGGTC.............	16	2	20	0.05	1	0	0	0	1
..............................................................TCGTCGATTGAGTCGAA...........................................................................................................................................................................	17	2	20	0.05	1	1	0	0	0
...GGTCTATTCTACCCTG.......................................................................................................................................................................................................................................	16	2	20	0.05	1	0	1	0	0
...............................................................................................................................................................................................................................GGAGGAGTTAGATTAAT..........	17	2	20	0.05	1	1	0	0	0

Species	Coordinate	ID	Alignment
droSim2	2r:12321146-12321395 -	dsi_13144	CAACCAGAAAAGATTGG--ACTACTTCCACCAGAAAG---AGGAGGAGCTCTCGGGTCTGCAGGGCCAGCAGCTAACCCAACTTCAGAGGGAGCTCTCCAACCAGCAACAGAGTCT---CCTGAGCCAACAGCAGCTGCAGCAATCCAAGTTGTTACAACTGCAGCAGTGCGTCCA------------------------------------------------GAGCCAAGAGTTGCAGCAACAGATGCAGCATCTCACCC---AGAAGTCACAACAGCAAC------------------------------------------CTCCTCAAGCTA-------------------ATCAACAGCAGCA---------A
droSec2	scaffold_1:9148569-9148818 -	dse_705	CAACCAGAAAAGATTGG--ACTACTTCCACCAGAAAG---AGGAAGAGCTCTCGGGTCTGCAGGGGCAGCAGCTAACCCAACTTCAGAGGGAGCTCTCCAACCAGCAACAGAGTCT---CCTGAGCCAACAGCAGCTGCAGCAATCAAAGTTGTTGCAACTGCAGCAGTGCGTCCA------------------------------------------------GAGCCAAGAGTTGAAGCAACAGATGCAGCATCTCACCC---AGAAGTCACAACAGCAAC------------------------------------------CTCCTCAAGCTA-------------------ATCAACAGCAGCA---------A
dm3	chr2R:11654994-11655243 -		CAACCAGAAAAGATTGG--ACTACTTCCACCAGAAAG---AGGAGGAGCTCTCGGGTCTGCAGGGCCAACAGCTAACCCAACTTCAGAGGGAGCTCTCGAACCAGCAACAGAATCT---TCTGAGCCAACAGCAACTGCAGCAATCCAAGTTGTTGCAACTGCAGCAGTGCGTCCA------------------------------------------------GAGCCAAGAGTTGCAGCAACAGGTGCAGCATCTCACCC---AGAAATCACAACAGCAAC------------------------------------------CTCCTCAAGCTA-------------------ACCAACAGCAGCA---------A
droEre2	scaffold_4845:14207527-14207770 +	der_1140	CAACCAGAAAAGATTGG--ACTACTTCCACCAGAAGG---AGGAGGAGCTCTCGGGCCTCCAGGGCCAGCAGCTAACCCAGCTTCAGAGGGAGCTCTCCAACCAGCAACAGAGTCT---CCTGAGCCAACAGCAATTGCAGCAATCCAAGTTGTTGCAACTGCAGCAGTGCGTCCA------------------------------------------------GAGCCAAGAGCTGCAGCAACAGATGCAGCAACTCGCCC---AGAAGTCGCAGCAGCAAC------------------------------------------CTCCTCAAGCCA-------------------------ACCAGCA---------A
droYak3	2R:17332095-17332353 +	dya_601	CAACCAGAAAAGATTGG--ACTACTTCCACCAGAAAG---AGGAGGAGCTCTCGGGTCTCCAGGGCCAGCAGCTAACACAACTTCAGAGGGAGCTCTCCAATCAGCAACAGAGTCT---GCTGAGCCAACAGCAATTGCAGCAATCCAAGTTGTTGCAACTGCAGCAGTGCGTCCA------------------------------------------------AAGCCAAGAGTTGCAGCAACAGATGCAGCATCTCACCC---AGAAGGCACAACAGCAAC------------------------------------------CTCCTCAAGCTA-------------------ACCAACAGCAGCAACTGCAACTG
droEug1	scf7180000409672:553816-554056 -		CAATCAGAAAAGATTGG--ACTACTTTCATCAAAAGG---AAGAGGAGCTTAACGGTATCCAGGGTCAGCAGTTAACCCAACTGCAAAGGGAACTCTCGCATCAGCAACAGAGTCT---CCTGAGCGAACAGCAGCTGCAGCAAACTAAGTTATTGCAACTGCAACAGTGTGCTCA------------------------------------------------AAGTCAAGAGTTGCAGCAACAGATACAGCAACTTACGC---AAAAGTCACA---GCAAT------------------------------------------CTTCTCAAGTCA-------------------------ACCAGCA---------A
droBia1	scf7180000302292:4003504-4003756 +		AAATCAGAAGAGACTGG--ACTACTTCCACCAGAAGG---AGGAGGAGCTGTCGGGTCTCCAGGGCCAGCAGCTGACCCAGCTGCAGAGGGAGCTCTCGAACCAGCAGCAGAGCCT---CCTCAGCCAACAGCAACTGCAGCAATCCAAGTTGCTGCAACTGCAGCAGTGCGTCCA------------------------------------------------AAGCCAAGAGCTGCAGCAACAGGTGCAGCAACTCAGTC---AGAAGTCGCAGCGGCAG----------------------------------GAGCAACAT------------GTCTT------------GACCCAGCAGCAGCA---------A
droTak1	scf7180000415241:24885-25116 +		CAACCAGAAGAGACTGG--ACTACTTCCACCAGAAGG---AGGAGGAGCTGTCGGGTCTCCAGGGTCAGCAGTTGACCCAACTGCAAAGGGAGCTCTCCAACCAACAGCAGAGTCT---CCTCAGCCAACAGCAGCTGCAGCAATCCAAGTTGTTGCAACTGCAGCAGTGTGTCCA------------------------------------------------GAGCTCGGAGTTGCAGCAACAGATGCAGCAAATAGGGC---AGAAGTCCCGGA---AA----------------------------------GAGCAGC--CTCC-------------------------------------------------T
droEle1	scf7180000491107:634602-634860 -		CAACCAGAAGAGATTGG--ACTTCTTCCACAAGAAGG---AGGAGGAACTAAATGGCCTCCAGGGCCAGCAGTTGACCCAGCTGCAGAGGGAACTCTCCAATCAGCAGCAGAGCCT---GCTGAGCCAACAGCAACTGCAGCAGTCCAAGTTGCTGCAACTGCAACAGTGTGCCCA------------------------------------------------TAGCCAAGAGTTGCAGCAACAGATACAGCACCTCTCGC---AGAAGTCCCAGCAGCAA----------------------------------GAGCAACAT------------GTCTT------------GACCCAGCAGCAGCAACCTCC---T
droRho1	scf7180000779911:457429-457666 +		CAATCAGAAGCGATTGG--AGTACTTCCACCAGAAGG---AGGAGGAGCTGTCGGGCCTCCAGGGGCAGCAGCTCACCCAACTGCAGAGGGAACTCTCGAACCAGCAGCAGAACCT---CCTGAGCCAACAGCAACTGCAGCAGTCCAAGATGCTCCAGCTGCAGCAGTGTGCCCA------------------------------------------------GAGTCAGGAGTTGCAGCACCAGATGCAGCAACTCACAC---AGAAGTCGCAACAGCAGC-------------------------------------------------------------------------AGCAGCAGCAGCA---------G
droFic1	scf7180000453809:149307-149535 -		GAACCAGAAGCGGCTAG--ACTTCTACCACAAGAAGG---AGGAGGAGCTGTCGGGCATCCAGGGACTGCAGCTGACCCAACTGCAGAGGGAGCTGTCCAACCAGCAGCAGAGCCT---CCTGAGCGAACAGCAGTTGCAGCAGGCGAAGTTGCTGCAGTTGCAGCAGTGCGCCCA------------------------------------------------AAGTCGGGAGTTGCAGCAGCAGATGCAGCAGATCGGAC---GCAAGTCGCAGC----------------------------------------------------------------------------------AGCAGCAGCA---------A
droKik1	scf7180000302682:1829586-1829847 -		TAACCAGAAGCGTTTGG--AGTACTTCCACATGAAGG---AGGAGGAGCTGTCGGGTCTGCAGGGCCAGCAGCTTACCCAGCTTCAGCGAGAGTTGTCCAACCAGCAGCAAAGTCT---GCTCAGCCAGCAGCAGTTGCAGCAATCCAAGCTGCTACAGCTGCAGCAGTGCGTCCA------------------------------------------------GAGTCAGGAGCTGCAGCAGCAGATGCAGCAGATCAGCC---AGAAGTCGCAGCAGCAA----------------------------------GAGCAGCAT------------CTACTGACCCAG---CAGAATCAGCAGCAGCA---------A
droAna3	scaffold_13337:10618295-10618538 -		GCAACAGGCGGCATTGC--ACCACCACCAGCAACAAC---AGCAGCAG---------------------------------------------------------------CAACA---GCAGCAACAACAGCAGCAGCACCAACAGCACTTGCAGCAACAGCAGCAGCACGCACATCACCAGCATGTAGCTGCCGTGTT------GC---------------------AGCAGCAGCAGCAACAGCAG------CAACCGC---ATGCACTCCATCAGCAG-CATGGACAGCAGCAACATCATGGCCATAACCAGCACCAG---------------CACCATTCCCAC---CAGCAGCAGCAGCAGCA---------A
droBip1	scf7180000396372:45151-45328 +		TAACCAGAAGCGGCTCG--ACTATTTCCACAAGAAGG---AGGAGGAATTC------------------------------------------------------CAGCAGACCTTTGGCCTGAGCCAGCAGGAGCTGCAGCAGACGCAGTTGTTGCAACTGCAACGGTGTGTCAA------------------------------------------------GGCTGATGAGTTGCAGCAGCAGATTCAGCAAATCACTC---AAAAGTCCCAAC----------------------------------------------------------------------------------AACAGCAGCA---------A
dp5	3:19530395-19530656 +	dps_1323	CAACCAGAAGCGCCTCG--ACTTCTACCACAAGAAGG---AAGAGGAGCTGCAAAGTCAACAAACTGAGCAGCAGCTCCAAC---------------------------AGATCCA---GCAGAATCAACGGGAACTCCAGCAGAATCAAATAAATCAGCTGCAGCAACA-GCA-----ACGAGAA-TCTCAACA-----ACAATCCCAACAGGAGCTCCAGCAGAGTCAGATGTCGCAACAGCAGATGCAAAAA---ACTC---AACAATCTAAACAGCAAC------------------------------------------TCTATCAAACTC-------------------AACAACAACAACAGATTAG---C
droPer2	scaffold_25:402303-402537 -		GCAGCAGCAGCAGCAGT--ACCAGCAGCA---GCAGG---AGCAGGAGCAGCAGCAGTACCAGAAGCAGCAGCAGCAGCAGCAGTACCAGAAGCAGCAGCATCAGCAGCAGCAGCA---GCAGTACCAACAGCAGCAGGAGCAGGAGCAGCA------------GCAGTGGGAACA------------------------------------------------GCAGCAGCAACGGCAGCGGCAGCAGTACCAGCAGCAGC---GGCAGTGCCAGCAGCAG----------------------------------GAGCAGCAG---------------------------CCGCTGCAGCAGCAGCA---------G
droWil2	scf2_1100000004913:128604-128838 -		ACAGCAGCAACAATTGC--AGCAACAACAGC---AAC---AGCAGCAACA---ATGGCAGCAACAACAACAGCAACAACAACTGCAGCAGCAACAACAACAGCAGCAACAACAACA---GCAGCAGCAACAACAGCATCAGC---------AACAGCAACAGCAGCAACGAATGCA------------------------------------------------ACAGCAACAGCAACA------GCAGCAACAA-------------------------------TTGCAGCAACAACAGCAACAGCAGCAACAACAACAGC------------------------AA---CAACAACAACAGCAGCA---------A
droVir3	scaffold_13047:13396989-13397223 -		GCAGCAGCAACAACATT--------TTCAACAGCAGCAGCAGCAGCAGCA---GCAACAGCAACAT------------------------------TTGCAGCAACATCAAAAGCA---GT------------------------------------TACAACAGCAACAGCAACAGCATCAACAG-AAGCAGCTTC--A------ACAGCAGCAGCAGCAGCATCAGCAACAGCAACAGCAGCAGCAGCAGCAG-------------------------------TTACAACAACAACAGCAACAACAGCAACAACAACAA---------------CAACAGGCTCAACATCATCATCAGCAGCAGCA---------A
droMoj3	scaffold_6473:10898027-10898269 +		CAACAGAAAAAGCATCAGCTGCAACAGCAACAGCAGC---AACAGCAGCAACAGCAGCAGCAGCAACAGCAGCAGCAACAGCAGCAGCAGCAACAGCAGAAGCAGCAAC------------AGCAGCAACAGCAACAGCAGCAACAGCAGCAGCAACAACAGCAGCAGCAACAGCA------------------------------------------------ACAGCAGCAGCAGCAGCAGCAACAGCAGCAGCAGCAAC---AGCAGCAGCAGCAGCAA----------------------------------TAGCGGC------------------------AA---CAGCCACAGCATCAGCA---------A
droGri2	scaffold_15074:7620767-7621006 -	dgr_254	CAATCAGGTAATAATGG--TTCACTACTACTAGCTAA---TAGTCAAATGCCCG-CACAGCAGCAGCAGCAGGCAAGTCAGAGTCAAA------------------------GTCA---AA-------ACAGCAACAGCAG---------CAGCAGCAACAACAGTAATGTTGTCA------------------------A--TGCACAGCAGCAGCAACAGCAGCAGCAACTTGCACAACAGCAGCAGCATAGC---GCACAGCAGCAACTT-------------GCACAGCAACAACAACAGCAGC---------AGC---------------------------AA---CAACAACAGCAGCAGCA---------A

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droSim2

CAACCAGAAAAGATTGG--ACTACTTCCACCAGAAAG---AGGAGGAGCTCTCGGGTCTGCAGGGCCAGCAGCTAACCCAACTTCAGAGGGAGCTCTCCAACCAGCAACAGAGTCT---CCTGAGCCAACAGCAGCTGCAGCAATCCAAGTTGTTACAACTGCAGCAGTGCGTCCA------------------------------------------------GAGCCAAGAGTTGCAGCAACAGATGCAGCATCTCACCC---AGAAGTCACAACAGCAAC------------------------------------------CTCCTCAAGCTA-------------------ATCAACAGCAGCA---------A	Size	Hit Count	Total Norm	Total	M023 Head	M024 Male-body	M025 Embryo	M053 Female-body	O001 Testis	O002 Head	SRR553485 Ovary	SRR553486 Ovary	SRR553487 Ovary	SRR553488 Ovary	SRR618934 Ovary	V044 Embryo	SRR902008 Ovary	SRR902009 Testis	SRR1275487 Male larvae	SRR1275485 Male prepupae	SRR1275483 Male prepupae
..............................................AGCTCTCGGGTCTGCAGGGCC........................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................AGCAACAGAGTCT---CCTGAGCC............................................................................................................................................................................................................................................................	21	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................TCAGAGGGAGCTCTCCAACCAGCA................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................ACTGCAGCAGTGCGTCCA------------------------------------------------GAGCC......................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0
............................................GGAGCTCTCGGGTCTGCAGGGCC........................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................GAGGGAGCTCTCCAACCAGC.................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0

droSec2

CAACCAGAAAAGATTGG--ACTACTTCCACCAGAAAG---AGGAAGAGCTCTCGGGTCTGCAGGGGCAGCAGCTAACCCAACTTCAGAGGGAGCTCTCCAACCAGCAACAGAGTCT---CCTGAGCCAACAGCAGCTGCAGCAATCAAAGTTGTTGCAACTGCAGCAGTGCGTCCA------------------------------------------------GAGCCAAGAGTTGAAGCAACAGATGCAGCATCTCACCC---AGAAGTCACAACAGCAAC------------------------------------------CTCCTCAAGCTA-------------------ATCAACAGCAGCA---------A	Size	Hit Count	Total Norm	Total	M054 Female-body	V113 Male-body	V114 Embryo	V115 Head
.......................................................................................................................................................................GTGCGTCCA------------------------------------------------GAGCCAAGAGTTGAA............................................................................................................................................	24	1	2.00	2	0	2	0	0
...............................................................................AACTTCAGAGGGAGCTCTCCAACCA...................................................................................................................................................................................................................................................................................	25	1	2.00	2	0	2	0	0
......................................................................................................................................................................................................................................AGAGTTGAAGCAACAGATGCAGC..............................................................................................................................	23	1	1.00	1	0	1	0	0
................................................................................................................................................................TGCAGCAGTGCGTCCA------------------------------------------------GAGCCA.....................................................................................................................................................	22	1	1.00	1	0	1	0	0
..................................................CTCGGGTCTGCAGGGGCAGCAG...................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	1	0	0
...............................................GCTCTCGGGTCTGCAGGGGCA.......................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	1	0	0	0
..............................................AGCTCTCGGGTCTGCAGGGG.........................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	1
................................................................................ACTTCAGAGGGAGCTCTCCAACCA...................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	1	0	0
...............................................................................................................................................................CTGCAGCAGTGCGTCCA------------------------------------------------GAGC.......................................................................................................................................................	21	1	1.00	1	0	1	0	0
.............................................GAGCTCTCGGGTCTGCAGGGGC........................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	1	0	0	0
................................................................................ACTTCAGAGGGAGCTCTCCAACC....................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	1	0	0
........................................................................................................................................................................................................................................AGTTGAAGCAACAGATGCA................................................................................................................................	19	1	1.00	1	1	0	0	0
...............................................................................................................................................................................................................................................................CTCACCC---AGAAGTCACAACAGC...................................................................................................	22	1	1.00	1	0	0	0	1
...........................................................................................................ACAGAGTCT---CCTGAGCCAAC.........................................................................................................................................................................................................................................................	20	1	1.00	1	0	1	0	0
....................................................................................................ACCAGCAACAGAGTCT---CCTGAGC.............................................................................................................................................................................................................................................................	23	1	1.00	1	0	1	0	0
......................................................................................GAGGGAGCTCTCCAACCAGCA................................................................................................................................................................................................................................................................................	21	1	1.00	1	1	0	0	0
.......................................................................................................................................................................GTGCGTCCA------------------------------------------------GAGCCAAGAGTTGAAG...........................................................................................................................................	25	1	1.00	1	0	1	0	0
.............................................................................................................................................................AACTGCAGCAGTGCGTCCA------------------------------------------------GAGCC......................................................................................................................................................	24	1	1.00	1	0	1	0	0
.................................................................................................................................................................................................................................................AACAGATGCAGCATCTCACCC---..................................................................................................................	21	1	1.00	1	0	0	0	1

dm3

CAACCAGAAAAGATTGG--ACTACTTCCACCAGAAAG---AGGAGGAGCTCTCGGGTCTGCAGGGCCAACAGCTAACCCAACTTCAGAGGGAGCTCTCGAACCAGCAACAGAATCT---TCTGAGCCAACAGCAACTGCAGCAATCCAAGTTGTTGCAACTGCAGCAGTGCGTCCA------------------------------------------------GAGCCAAGAGTTGCAGCAACAGGTGCAGCATCTCACCC---AGAAATCACAACAGCAAC------------------------------------------CTCCTCAAGCTA-------------------ACCAACAGCAGCA---------A	Size	Hit Count	Total Norm	Total	GSM154618 Ovary	GSM154620 Ovary	GSM154621 Ovary	GSM154622 Ovary	GSM180328 Head	GSM180329 Mixed-body	GSM180330 Embryo	GSM180331 Embryo	GSM180332 Embryo	GSM180333 Embryo	GSM180334 Larvae	GSM180335 Disc	GSM180336 Pupae	GSM180337 S2	GSM231091 Ovary	GSM239041 Head	GSM239050 Head	GSM239051 S2	GSM239052 S2	GSM246084 Head	GSM266765 S2	GSM280082 Ovary	GSM280083 Ovary	GSM280084 Ovary	GSM280085 Testis	GSM280086 Ovary	GSM280087 S2-NP	GSM280088 S2-NP	GSM312995 Head	GSM313160 Head	GSM313161 Head	GSM313162 Head	GSM313163 Head	GSM313164 Head	GSM313165 Head	GSM343287 Embryo	GSM379050 Ovary	GSM379051 Ovary	GSM379052 Ovary	GSM379053 Ovary	GSM379054 Ovary	GSM379055 Ovary	GSM379056 Ovary	GSM379057 Ovary	GSM379058 Ovary	GSM379059 Ovary	GSM379060 Ovary	GSM379061 Ovary	GSM379062 Ovary	GSM379063 Ovary	GSM379064 Ovary	GSM379065 Ovary	GSM379066 Ovary	GSM379067 Ovary	GSM424739 S2	GSM424740 S2	GSM424741 S2	GSM467729 Female-body	GSM467730 Female-body	GSM467731 Female-body	M002 CS	M003 Male-body	M004 Male-body	M005 ML-DmD32	M006 ML-DmD32	M029 OSC	M030 OSC	M031 OSC	M032 S2-R+	M033 S2-R+	M034 S2-R+	M035 S2-R+	M036 S2-R+	M037 S2-R+	M038 S2-R+	M039 S2-R+	M048 S2-R+	OSS2 OSS	OSS6 OSS	OSS7 OSS	OSS8 OSS	S1 Head	S10 Embryo	S11 Embryo	S12 Embryo	S13 Embryo	S14 Embryo	S15 S2-GMR	S16 Kc	S17 Larvae	S18 Larvae	S19 Pupae	S2 Head	S20 Pupae	S21 Disc	S22 Head	S23 Female-body	S24 Male-body	S25 Larvae	S26 Larvae	S27 Pupae	S28 Pupae	S29 Head	S3 Male-body	S30 S2-GMR	S31 S2	S32 S2	S33 Kc	S34 Kc	S35 Kc	S4 Female-body	S5 Disc	S6 Embryo	S7 Embryo	S8 S2	S9 Embryo	SRR001337 Head	SRR001338 Head	SRR001339 Head	SRR001340 Head	SRR001341 Head	SRR001342 Head	SRR001343 Head	SRR001344 Head	SRR001345 Head	SRR001346 Head	SRR001347 Head	SRR001348 Head	SRR001349 Head	SRR001664 Head	SRR010951 Ovary	SRR010952 Ovary	SRR010953 Ovary	SRR010954 Ovary	SRR010955 Ovary	SRR010956 Ovary	SRR010957 Ovary	SRR010958 Ovary	SRR010959 Ovary	SRR010960 Ovary	SRR014268 Embryo	SRR014269 Embryo	SRR014270 Embryo	SRR014271 Embryo	SRR014272 Embryo	SRR014273 Ovary	SRR014274 Ovary	SRR014275 Ovary	SRR014276 Ovary	SRR014277 Ovary	SRR014278 Ovary	SRR014279 Ovary	SRR014280 Ovary	SRR014281 Ovary	SRR014282 Ovary	SRR023197 S2	SRR023399 S2	SRR023400 S2	SRR023402 S2	SRR023407 S2	SRR029028 S2	SRR029029 S2	SRR029030 S2	SRR029031 S2	SRR029032 S2	SRR029033 S2	SRR029608 Head	SRR029633 Head	SRR030145 gb3	SRR031692 Head	SRR031693 Head	SRR031694 Head	SRR031696 Head	SRR031697 Head	SRR031698 Head	SRR031699 Head	SRR031700 Head	SRR031701 Head	SRR031702 Head	SRR031703 Head	SRR031704 Head	SRR032092 S2	SRR032093 S2	SRR032094 S2	SRR032095 S2-NP	SRR032096 S2-NP	SRR032152 Head	SRR060643 Testis	SRR060644 Ovary	SRR060645 Testis	SRR060646 Ovary	SRR060647 Ovary	SRR060648 Ovary	SRR060649 Ovary	SRR060650 Testis	SRR060651 Ovary	SRR060652 Testis	SRR060653 Ovary	SRR065151 Ovary	SRR065152 Ovary	SRR065153 Ovary	SRR065154 Ovary	SRR065155 Ovary	SRR065800 Ovary	SRR065801 Ovary	SRR065802 Ovary	SRR065803 Ovary	SRR065804 Ovary	SRR065805 Ovary	SRR065806 Ovary	SRR065807 Ovary	SRR097865 S2-NP	SRR097866 S2-NP	SRR097867 S2-NP	SRR298536 Ovary	SRR298537 Ovary	SRR298711 Ovary	SRR298712 Ovary	SRR317110 Ovary	SRR317111 Ovary	SRR317112 Ovary	SRR317113 Ovary	SRR317114 Ovary	SRR317115 Ovary	SRR317116 Ovary	SRR317117 Ovary	SRR341115 S2	SRR341116 S2	SRR341117 S2	SRR341118 S2	SRR351332 Mixed-body	SRR351333 Mixed-body	T004 OSC	T005 CME-L1	V001 Embryo	V002 Embryo	V003 S2	V006 Female-body	V007 Head	V008 S2	V009 CME-L1	V010 ML-DmD20-C5	V011 Sg4	V012 Male-body	V013 Head	V014 DTT	V015 DreRFHV	V018 Kc167	V019 GM2	V020 S2-R+	V021 ML-DmD21	V022 ML-DmD32	V023 Head	V024 Kc167	V025 S2-R+	V026 1182-2H	V027 ML-DmD21	V028 CME-W1-Cl.8+	V029 ML-DmD9	V030 ML-DmD8	V031 GM2	V032 S1	V033 CME-W1-Cl.8+	V034 ML-DmD16-C3	V035 ML-DmD32	V036 ML-DmD20-C5	V037 S2	V038 S2	V063 Ovary	V0632 Ovary	V064 Ovary	V0642 Ovary	V065 Ovary	V0652 Ovary	V066 Ovary	V0662 Ovary	V067 S2-NP	V073 mbn2	V074 S3	V075 ML-DmBG1-C1	V076 ML-DmBG3-C2	V077 Head	V078 Head	V079 Head	V080 Head	V081 Embryo	V082 Embryo	V083 Male-body	V084 Female-body	V085 CME-W2	V086 Female-body	V088 Ovary	V0882 Ovary	V089 Ovary	V0892 Ovary	V090 Male-body	V091 fGS/OSS	V092 Male-body	V093 Male-body	V094 S2-R+	V095 S2-R+	V096 Ovary	V097 Ovary	V098 Ovary	V125 ML-DmD9	V126 CME-L1	V127 G2	V128 S3	V129 ML-DmBG1-C1	V130 ML-DmBG3-C2	V131 ML-DmD16-C3	V132 ML-DmD32	V133 Sg4	V134 ML-DmD8	V135 CME-W2	V136 Male-body	V137 Head	V138 Male-body	V139 Female-body	V140 Female-body	V141 Female-body	V142 Female-body	V144 OSC	V145 S2	V146 S1	V147 1182-2H	V148 mbn2	GSM1528798 follicle cells
......................................................................................GAGGGAGCTCTCGAACCAGC.................................................................................................................................................................................................................................................................................	20	1	7.00	7	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................GTGCGTCCA------------------------------------------------GAGCCAAGAGTTGC.............................................................................................................................................	23	1	6.00	6	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................GAGGGAGCTCTCGAACCA...................................................................................................................................................................................................................................................................................	18	1	5.00	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................ACCCAACTTCAGAGGGAGCT............................................................................................................................................................................................................................................................................................	20	1	5.00	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................GAGCCAAGAGTTGCAGCA.........................................................................................................................................	18	1	5.00	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................GCAAC------------------------------------------CTCCTCAAGCTA-------------------ACC....................	20	1	4.00	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................GCAGTGCGTCCA------------------------------------------------GAGCCAAGAGTTGC.............................................................................................................................................	26	1	4.00	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................GCAACAGGTGCAGCATCTC.........................................................................................................................	19	1	4.00	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
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.....................................................................................................................................................................................................................................................................................AGCAAC------------------------------------------CTCCTCAAGCTA-------------------.......................	18	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................GTTGTTGCAACTGCAGCAGTGCGTCCA------------------------------------------------...........................................................................................................................................................	27	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................TGCAGCATCTCACCC---AGA...............................................................................................................	18	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................A------------------------------------------------GAGCCAAGAGTTGCAGCAACA......................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................TCTGAGCCAACAGCAACTGCAGCA............................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droEre2

CAACCAGAAAAGATTGG--ACTACTTCCACCAGAAGG---AGGAGGAGCTCTCGGGCCTCCAGGGCCAGCAGCTAACCCAGCTTCAGAGGGAGCTCTCCAACCAGCAACAGAGTCT---CCTGAGCCAACAGCAATTGCAGCAATCCAAGTTGTTGCAACTGCAGCAGTGCGTCCA------------------------------------------------GAGCCAAGAGCTGCAGCAACAGATGCAGCAACTCGCCC---AGAAGTCGCAGCAGCAAC------------------------------------------CTCCTCAAGCCA-------------------------ACCAGCA---------A	Size	Hit Count	Total Norm	Total	M055 Female-body	M057 Embryo	V060 Head	V040 Embryo	V107 Male-body	V108 Head	GSM1528801 follicle cells
...................................................................................................AACCAGCAACAGAGTCT---CCTGAGCC............................................................................................................................................................................................................................................................	25	1	2.00	2	1	0	0	0	0	1	0
................................................................................................................................................................TGCAGCAGTGCGTCCA------------------------------------------------GA.........................................................................................................................................................	18	1	2.00	2	2	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................GCAGCAAC------------------------------------------CTCCTCAAGCCA-------------------------.................	20	1	2.00	2	0	0	0	0	0	2	0
.............................................................................................................................................................................................................................................................AACTCGCCC---AGAAGTCGCAGCAGCA..................................................................................................	25	1	2.00	2	1	0	1	0	0	0	0
..........................................................................................................................................................................................................................................................................GAAGTCGCAGCAGCAAC------------------------------------------CTCC..................................................	21	1	1.00	1	1	0	0	0	0	0	0
.........................................GGAGGAGCTCTCGGGCCTCCAGGGCC........................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	1	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................CGCCC---AGAAGTCGCAGCAGCAAC------------------------------------------C.....................................................	24	1	1.00	1	1	0	0	0	0	0	0
..........................................GAGGAGCTCTCGGGCCTCCAGGGC.........................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	1	0	0	0	0	0	0
......................................................................................................................................................TTGTTGCAACTGCAGCAGTGCGTCCA------------------------------------------------...........................................................................................................................................................	26	1	1.00	1	1	0	0	0	0	0	0
...........................................................................ACCCAGCTTCAGAGGGAGCTCTCCA.......................................................................................................................................................................................................................................................................................	25	1	1.00	1	1	0	0	0	0	0	0
.......................................................................................................................CCTGAGCCAACAGCAATTGCA...............................................................................................................................................................................................................................................	21	1	1.00	1	1	0	0	0	0	0	0
..................................................................................TTCAGAGGGAGCTCTCCAACCAG..................................................................................................................................................................................................................................................................................	23	1	1.00	1	1	0	0	0	0	0	0
..................................................................................................................................................................................................................................................ACAGATGCAGCAACTCGCCC---A.................................................................................................................	21	1	1.00	1	0	0	0	0	0	1	0
..............................................................................................................GAGTCT---CCTGAGCCAACAGC......................................................................................................................................................................................................................................................	20	1	1.00	1	1	0	0	0	0	0	0
................................................................................GCTTCAGAGGGAGCTCTCCAACC....................................................................................................................................................................................................................................................................................	23	1	1.00	1	1	0	0	0	0	0	0
......................................................................................................................................................................AGTGCGTCCA------------------------------------------------GAGCCAAGAGCTGCA............................................................................................................................................	25	1	1.00	1	1	0	0	0	0	0	0
..............................................................................................................GAGTCT---CCTGAGCCAACAGCAATTGCAG..............................................................................................................................................................................................................................................	28	1	1.00	1	1	0	0	0	0	0	0
......................................................................................................................................................................AGTGCGTCCA------------------------------------------------GAGCCAAGAGCTGCAGCA.........................................................................................................................................	28	1	1.00	1	1	0	0	0	0	0	0
........................................................................................................................................................................................................................................................GCAGCAACTCGCCC---AGAAGTCGCAGCA.....................................................................................................	27	1	1.00	1	1	0	0	0	0	0	0
...................................GG---AGGAGGAGCTCTCGGGCCT................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	1	0	0
...............................AGAAGG---AGGAGGAGCTCTCGGGCCTCC..............................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	0	0	1	0	0
..........................................................................................................AACAGAGTCT---CCTGAGCCAACAGCA.....................................................................................................................................................................................................................................................	25	1	1.00	1	1	0	0	0	0	0	0
...............................................................................................................AGTCT---CCTGAGCCAACAGC......................................................................................................................................................................................................................................................	19	1	1.00	1	1	0	0	0	0	0	0
.....AGAAAAGATTGG--ACTACTTCCACC............................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	1	0
..................................................................................TTCAGAGGGAGCTCTCCAACCAGCAAC..............................................................................................................................................................................................................................................................................	27	1	1.00	1	1	0	0	0	0	0	0
.................................................................................................................................................................GCAGCAGTGCGTCCA------------------------------------------------GAGCCAAGAGC................................................................................................................................................	26	1	1.00	1	0	0	0	0	1	0	0
.................................................................................................................................................................................................................................................................................CAGCAGCAAC------------------------------------------CTCCTCAAGCCA-------------------------ACC..............	25	1	1.00	1	1	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................TGCAGCAACTCGCCC---AGAA..............................................................................................................	19	1	1.00	1	1	0	0	0	0	0	0
................................................................................GCTTCAGAGGGAGCTCTCCAACCAGCA................................................................................................................................................................................................................................................................................	27	1	1.00	1	1	0	0	0	0	0	0
..................................AGG---AGGAGGAGCTCTCGG....................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	1	0	0	0	0	0	0
....................................................................................................ACCAGCAACAGAGTCT---CCTGAGCC............................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	1	0
..................................................................................................................................................................................................................................................................GCCC---AGAAGTCGCAGCAGCA..................................................................................................	20	1	1.00	1	0	0	0	0	1	0	0
................................GAAGG---AGGAGGAGCTCTCGGGCCTCCA.............................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	1	0	0	0	0	0	0
...................................................................................TCAGAGGGAGCTCTCCAACCAGCAACA.............................................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	0	0	1	0	0
................................................................................................................................................................TGCAGCAGTGCGTCCA------------------------------------------------GAGCC......................................................................................................................................................	21	1	1.00	1	0	0	0	0	1	0	0
..............................................................................................................................................................................................................................................................ACTCGCCC---AGAAGTCGCAGCAGCAAC------------------------------------------C.....................................................	27	1	1.00	1	1	0	0	0	0	0	0
...............................................................................................................................................................................................................................................GCAACAGATGCAGCAACTCGCCC---A.................................................................................................................	24	1	1.00	1	0	0	0	0	1	0	0
.....................................................................................................................................................................................................................................................GATGCAGCAACTCGCCC---AGA...............................................................................................................	20	1	1.00	1	1	0	0	0	0	0	0
...................................GG---AGGAGGAGCTCTCGGGC..................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	1	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................GATGCAGCAACTCGCCC---AGAAGTCGCA........................................................................................................	27	1	1.00	1	0	0	0	0	0	1	0
................................GAAGG---AGGAGGAGCTCTCGGGCCTCC..............................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	1	0	0	0	0	0	0
..............................................................................................TCTCCAACCAGCAACAGAGT.........................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	1	0	0
................................GAAGG---AGGAGGAGCTCTCGGGCCT................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	1	0	0
...............................................................................................................................................................................A------------------------------------------------GAGCCAAGAGCTGCAGCAACA......................................................................................................................................	22	1	1.00	1	1	0	0	0	0	0	0
............................................GGAGCTCTCGGGCCTCCAGGGCCAGCA....................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	1	0	0	0	0	0	0
...............................................................................................................................................................................A------------------------------------------------GAGCCAAGAGCTGCAGCAACAGAT...................................................................................................................................	25	1	1.00	1	0	0	0	0	0	1	0
...................................................................................................................................GCAATTGCAGCAATCCAAG.....................................................................................................................................................................................................................................	19	1	1.00	1	1	0	0	0	0	0	0
......................................................................................GAGGGAGCTCTCCAACCAGCA................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	1	0	0
...............................................................................AGCTTCAGAGGGAGCTCTCCAACCA...................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	1	0

droYak3

CAACCAGAAAAGATTGG--ACTACTTCCACCAGAAAG---AGGAGGAGCTCTCGGGTCTCCAGGGCCAGCAGCTAACACAACTTCAGAGGGAGCTCTCCAATCAGCAACAGAGTCT---GCTGAGCCAACAGCAATTGCAGCAATCCAAGTTGTTGCAACTGCAGCAGTGCGTCCA------------------------------------------------AAGCCAAGAGTTGCAGCAACAGATGCAGCATCTCACCC---AGAAGGCACAACAGCAAC------------------------------------------CTCCTCAAGCTA-------------------ACCAACAGCAGCAACTGCAACTG	Size	Hit Count	Total Norm	Total	M026 Head	M043 Female-body	M056 Embryo	V046 Embryo	V052 Head	V058 Head	V120 Male-body	SRR1275488 Male larvae	SRR1275486 Male prepupae	SRR1275484 Male prepupae	GSM1528802 follicle cells
................................................................................ACTTCAGAGGGAGCTCTCCA.......................................................................................................................................................................................................................................................................................	20	1	4.00	4	0	2	0	0	0	0	2	0	0	0	0
..........................................................................AACACAACTTCAGAGGGAGCTCTCCA.......................................................................................................................................................................................................................................................................................	26	1	2.00	2	0	1	0	0	0	0	1	0	0	0	0
.....................................................................................................................................................................................................................................................................................AGCAAC------------------------------------------CTCCTCAAGCTA-------------------ACC....................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
..ACCAGAAAAGATTGG--ACTACT..................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0
....................................................CGGGTCTCCAGGGCCAGCA....................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................AGCAGTGCGTCCA------------------------------------------------AAGCCAA....................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
..............................................................................................................................................................................................................................................AGCAACAGATGCAGCATCTCA........................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
......................................................GGTCTCCAGGGCCAGCAGCT.................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
.....AGAAAAGATTGG--ACTACC..................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0
................................................................................ACTTCAGAGGGAGCTCTCCAATCAGCAACA.............................................................................................................................................................................................................................................................................	30	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
...........................................................................................................................................................................GTCCA------------------------------------------------AAGCCAAGAGTTGC.............................................................................................................................................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................AGCCAAGAGTTGCAGCAACA......................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
..............................................................................CAACTTCAGAGGGAGCTCTCC........................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	1	0	0	0	0	0	0
...................................................................................................................................................................AGCAGTGCGTCCA------------------------------------------------AAGCCAAGA..................................................................................................................................................	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
..........................................................................AACACAACTTCAGAGGGAGCTCTCC........................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
...................................................................................TCAGAGGGAGCTCTCCAATCAGC.................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
...............................................................................AACTTCAGAGGGAGCTCTCCA.......................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
......................................................................................GAGGGAGCTCTCCAATCAGCA................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
...................................................................................................................................................................AGCAGTGCGTCCA------------------------------------------------AAGCCAAGAGTTGC.............................................................................................................................................	27	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
...............................................................................................................................................................................A------------------------------------------------AAGCCAAGAGTTGCAGCA.........................................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
..................................AAG---AGGAGGAGCTCTCGGGTCT................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
............................................................................................................................................................................TCCA------------------------------------------------AAGCCAAGAGTTGCA............................................................................................................................................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................CACAACAGCAAC------------------------------------------CTCCTCAAGCT...........................................	23	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
............................ACCAGAAAG---AGGAGGAGCTCT.......................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
.........................TCCACCAGAAAG---AGGAGGA............................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
....................................................................................................................................................AGTTGTTGCAACTGCAGCAGTGCGTC.............................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
........................................................................................................................................................................................................................................................GCAGCATCTCACCC---AGAAGGCA..........................................................................................................	22	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
...................................AG---AGGAGGAGCTCTCGGGT..................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................AC------------------------------------------CTCCTCAAGCTA-------------------ACCAACAGCAGCA..........	27	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
..........................................................................................................AACAGAGTCT---GCTGAGCCAACA........................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
...................................................................................TCAGAGGGAGCTCTCCAATCAGCA................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
................................................................................................................................................................TGCAGCAGTGCGTCCA------------------------------------------------AAG........................................................................................................................................................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................GTGCGTCCA------------------------------------------------AAGCCAAGAGTTGC.............................................................................................................................................	23	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0

droEug1

CAATCAGAAAAGATTGG--ACTACTTTCATCAAAAGG---AAGAGGAGCTTAACGGTATCCAGGGTCAGCAGTTAACCCAACTGCAAAGGGAACTCTCGCATCAGCAACAGAGTCT---CCTGAGCGAACAGCAGCTGCAGCAAACTAAGTTATTGCAACTGCAACAGTGTGCTCA------------------------------------------------AAGTCAAGAGTTGCAGCAACAGATACAGCAACTTACGC---AAAAGTCACA---GCAAT------------------------------------------CTTCTCAAGTCA-------------------------ACCAGCA---------A	Size	Hit Count	Total Norm	Total
No Reads

droBia1

AAATCAGAAGAGACTGG--ACTACTTCCACCAGAAGG---AGGAGGAGCTGTCGGGTCTCCAGGGCCAGCAGCTGACCCAGCTGCAGAGGGAGCTCTCGAACCAGCAGCAGAGCCT---CCTCAGCCAACAGCAACTGCAGCAATCCAAGTTGCTGCAACTGCAGCAGTGCGTCCA------------------------------------------------AAGCCAAGAGCTGCAGCAACAGGTGCAGCAACTCAGTC---AGAAGTCGCAGCGGCAG----------------------------------GAGCAACAT------------GTCTT------------GACCCAGCAGCAGCA---------A	Size	Hit Count	Total Norm	Total
No Reads

droTak1

CAACCAGAAGAGACTGG--ACTACTTCCACCAGAAGG---AGGAGGAGCTGTCGGGTCTCCAGGGTCAGCAGTTGACCCAACTGCAAAGGGAGCTCTCCAACCAACAGCAGAGTCT---CCTCAGCCAACAGCAGCTGCAGCAATCCAAGTTGTTGCAACTGCAGCAGTGTGTCCA------------------------------------------------GAGCTCGGAGTTGCAGCAACAGATGCAGCAAATAGGGC---AGAAGTCCCGGA---AA----------------------------------GAGCAGC--CTCC-------------------------------------------------T	Size	Hit Count	Total Norm	Total
No Reads

droEle1

CAACCAGAAGAGATTGG--ACTTCTTCCACAAGAAGG---AGGAGGAACTAAATGGCCTCCAGGGCCAGCAGTTGACCCAGCTGCAGAGGGAACTCTCCAATCAGCAGCAGAGCCT---GCTGAGCCAACAGCAACTGCAGCAGTCCAAGTTGCTGCAACTGCAACAGTGTGCCCA------------------------------------------------TAGCCAAGAGTTGCAGCAACAGATACAGCACCTCTCGC---AGAAGTCCCAGCAGCAA----------------------------------GAGCAACAT------------GTCTT------------GACCCAGCAGCAGCAACCTCC---T	Size	Hit Count	Total Norm	Total
No Reads

droRho1

CAATCAGAAGCGATTGG--AGTACTTCCACCAGAAGG---AGGAGGAGCTGTCGGGCCTCCAGGGGCAGCAGCTCACCCAACTGCAGAGGGAACTCTCGAACCAGCAGCAGAACCT---CCTGAGCCAACAGCAACTGCAGCAGTCCAAGATGCTCCAGCTGCAGCAGTGTGCCCA------------------------------------------------GAGTCAGGAGTTGCAGCACCAGATGCAGCAACTCACAC---AGAAGTCGCAACAGCAGC-------------------------------------------------------------------------AGCAGCAGCAGCA---------G	Size	Hit Count	Total Norm	Total
No Reads

droFic1

GAACCAGAAGCGGCTAG--ACTTCTACCACAAGAAGG---AGGAGGAGCTGTCGGGCATCCAGGGACTGCAGCTGACCCAACTGCAGAGGGAGCTGTCCAACCAGCAGCAGAGCCT---CCTGAGCGAACAGCAGTTGCAGCAGGCGAAGTTGCTGCAGTTGCAGCAGTGCGCCCA------------------------------------------------AAGTCGGGAGTTGCAGCAGCAGATGCAGCAGATCGGAC---GCAAGTCGCAGC----------------------------------------------------------------------------------AGCAGCAGCA---------A	Size	Hit Count	Total Norm	Total
No Reads

droKik1

TAACCAGAAGCGTTTGG--AGTACTTCCACATGAAGG---AGGAGGAGCTGTCGGGTCTGCAGGGCCAGCAGCTTACCCAGCTTCAGCGAGAGTTGTCCAACCAGCAGCAAAGTCT---GCTCAGCCAGCAGCAGTTGCAGCAATCCAAGCTGCTACAGCTGCAGCAGTGCGTCCA------------------------------------------------GAGTCAGGAGCTGCAGCAGCAGATGCAGCAGATCAGCC---AGAAGTCGCAGCAGCAA----------------------------------GAGCAGCAT------------CTACTGACCCAG---CAGAATCAGCAGCAGCA---------A	Size	Hit Count	Total Norm	Total
No Reads

droAna3

GCAACAGGCGGCATTGC--ACCACCACCAGCAACAAC---AGCAGCAG---------------------------------------------------------------CAACA---GCAGCAACAACAGCAGCAGCACCAACAGCACTTGCAGCAACAGCAGCAGCACGCACATCACCAGCATGTAGCTGCCGTGTT------GC---------------------AGCAGCAGCAGCAACAGCAG------CAACCGC---ATGCACTCCATCAGCAG-CATGGACAGCAGCAACATCATGGCCATAACCAGCACCAG---------------CACCATTCCCAC---CAGCAGCAGCAGCAGCA---------A	Size	Hit Count	Total Norm	Total	M044 Female-body	M058 Embryo	V039 Embryo	V055 Head	V105 Male-body	V106 Head
................................................................................................................................................................................TCACCAGCATGTAGCTGCCGTGTT------GC---------------------......................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	1
.................................................................................................................................................................................................................................................................................CATCAGCAG-CATGGACAGCAGC...................................................................................	22	1	1.00	1	0	1	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................G---------------CACCATTCCCAC---CAGCAGCA...................	21	1	1.00	1	1	0	0	0	0	0
................................ACAAC---AGCAGCAG---------------------------------------------------------------CAACA---GC..................................................................................................................................................................................................................................................................	20	20	0.25	5	0	5	0	0	0	0
.............................................CAG---------------------------------------------------------------CAACA---GCAGCAACAACAGCAGCAGC................................................................................................................................................................................................................................................	28	10	0.10	1	0	0	0	0	0	1
...............................................................................................................................................................................................................C---------------------AGCAGCAGCAGCAACAGC....................................................................................................................................	19	20	0.10	2	0	2	0	0	0	0
...............................................................................................................CAACA---GCAGCAACAACAGCAGCAGC................................................................................................................................................................................................................................................	25	15	0.07	1	0	1	0	0	0	0
...............................................................................................................CAACA---GCAGCAACAACAGCAGCA..................................................................................................................................................................................................................................................	23	20	0.05	1	0	1	0	0	0	0
........................................................................................................................CAGCAACAACAGCAGCAGC................................................................................................................................................................................................................................................	19	20	0.05	1	1	0	0	0	0	0
...............................................G---------------------------------------------------------------CAACA---GCAGCAACAACA........................................................................................................................................................................................................................................................	18	20	0.05	1	0	0	0	0	0	1

droBip1

TAACCAGAAGCGGCTCG--ACTATTTCCACAAGAAGG---AGGAGGAATTC------------------------------------------------------CAGCAGACCTTTGGCCTGAGCCAGCAGGAGCTGCAGCAGACGCAGTTGTTGCAACTGCAACGGTGTGTCAA------------------------------------------------GGCTGATGAGTTGCAGCAGCAGATTCAGCAAATCACTC---AAAAGTCCCAAC----------------------------------------------------------------------------------AACAGCAGCA---------A	Size	Hit Count	Total Norm	Total
No Reads

dp5

CAACCAGAAGCGCCTCG--ACTTCTACCACAAGAAGG---AAGAGGAGCTGCAAAGTCAACAAACTGAGCAGCAGCTCCAAC---------------------------AGATCCA---GCAGAATCAACGGGAACTCCAGCAGAATCAAATAAATCAGCTGCAGCAACA-GCA-----ACGAGAA-TCTCAACA-----ACAATCCCAACAGGAGCTCCAGCAGAGTCAGATGTCGCAACAGCAGATGCAAAAA---ACTC---AACAATCTAAACAGCAAC------------------------------------------TCTATCAAACTC-------------------AACAACAACAACAGATTAG---C	Size	Hit Count	Total Norm	Total	M022 Male-body	M040 Female-body	M059 Embryo	M062 Head	V043 Embryo	V051 Head	V112 Male-body	SRR902010 Ovary	SRR902011 Testis	SRR902012 CNS imaginal disc
..........................................................................................................................GAATCAACGGGAACTCCAGCAGAATC.......................................................................................................................................................................................................................................	26	1	7.00	7	0	0	0	0	0	0	0	0	7	0
.................................................................................................................................................................................................................ACAGGAGCTCCAGCAGAGTCAGATGT................................................................................................................................................	26	1	3.00	3	0	0	0	1	0	0	1	0	1	0
................................................................................................................................ACGGGAACTCCAGCAGAATC.......................................................................................................................................................................................................................................	20	1	3.00	3	0	0	0	0	0	0	0	0	3	0
................................GAAGG---AAGAGGAGCTGCAAA....................................................................................................................................................................................................................................................................................................................................	20	1	3.00	3	0	1	0	0	0	2	0	0	0	0
............................................................................................................................ATCAACGGGAACTCCAGCAGA..........................................................................................................................................................................................................................................	21	1	2.00	2	0	1	0	0	0	0	1	0	0	0
................................................................................................................TCCA---GCAGAATCAACGGGAACTCCA...............................................................................................................................................................................................................................................	25	1	2.00	2	0	2	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................AAAAA---ACTC---AACAATCTAAACAGCA..................................................................................................	25	1	2.00	2	0	0	0	2	0	0	0	0	0	0
...............................................................................................................................AACGGGAACTCCAGCAGAATCA......................................................................................................................................................................................................................................	22	1	2.00	2	0	0	0	0	0	0	0	0	2	0
......................................................................................................................................................ATAAATCAGCTGCAGCAACA-GCA-----ACG.....................................................................................................................................................................................................	26	1	1.00	1	0	0	0	1	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................ACAGCAAC------------------------------------------TCTATCAAACTC-------------------.......................	20	1	1.00	1	0	0	0	1	0	0	0	0	0	0
...............................AGAAGG---AAGAGGAGCTGC.......................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	0	0	0	1	0	0	0
................................GAAGG---AAGAGGAGCTGCAAAG...................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	1	0	0	0
..................................................................GAGCAGCAGCTCCAAC---------------------------AGATC.........................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	1	0	0	0	0	0	0
............................................................................................................................ATCAACGGGAACTCCAGCAGAATCA......................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	0	0	1	0
...............................AGAAGG---AAGAGGAGCTGCAAAGTCAAC..............................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	0	1	0	0	0	0	0	0
..............................................................................................................................CAACGGGAACTCCAGCAGA..........................................................................................................................................................................................................................................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0
....................................G---AAGAGGAGCTGCAAAGTCAACAAACT.........................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...................................................................AGCAGCAGCTCCAAC---------------------------AGATCCA---G...................................................................................................................................................................................................................................................................	23	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................CAGGAGCTCCAGCAGAGTCAGATGTCG..............................................................................................................................................	27	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..............................................................AACTGAGCAGCAGCTCCAAC---------------------------A.............................................................................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................ACAGGAGCTCCAGCAGAGTCAGA...................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	1	0	0	0	0
.AACCAGAAGCGCCTCG--ACTTCTACCACA............................................................................................................................................................................................................................................................................................................................................................	28	1	1.00	1	0	1	0	0	0	0	0	0	0	0
....................................................................................................................................................AAATAAATCAGCTGCAGCA....................................................................................................................................................................................................................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..................................................................GAGCAGCAGCTCCAAC---------------------------AGATCC........................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	1	0	0	0	0	0	0
.............................................................AAACTGAGCAGCAGCTCCAAC---------------------------..............................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	1	0	0	0	0	0	0
............................................................................................................................ATCAACGGGAACTCCAGCAGAATC.......................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	0	0	0	1	0
..........................................................................GCTCCAAC---------------------------AGATCCA---GCAGAATC............................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	1	0	0	0	0	0	0
...............................................................................................................................AACGGGAACTCCAGCAGAA.........................................................................................................................................................................................................................................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0
............................ACAAGAAGG---AAGAGGAGCT.........................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..........................................................................................................................GAATCAACGGGAACTCCAGCAGA..........................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	0	0	0	1	0
..............................AAGAAGG---AAGAGGAGCTGCAAAGTC.................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	1	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................ATCAAACTC-------------------AACAACAACAACAGAT.......	25	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..ACCAGAAGCGCCTCG--ACTTCT..................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.............................................................................CCAAC---------------------------AGATCCA---GCAGAAT.............................................................................................................................................................................................................................................................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................AGTCAGATGTCGCAACAGCAGATGC.................................................................................................................................	25	1	1.00	1	0	0	0	1	0	0	0	0	0	0
.......................................................................................................................................................TAAATCAGCTGCAGCAACA-................................................................................................................................................................................................................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..............................................................AACTGAGCAGCAGCTCCAAC---------------------------AGAT..........................................................................................................................................................................................................................................................................	24	1	1.00	1	0	1	0	0	0	0	0	0	0	0
......GAAGCGCCTCG--ACTTCTACCAC.............................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.........................................AGAGGAGCTGCAAAGTCAACA.............................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	1	0	0	0	0
............................................................................................................................................................CAGCTGCAGCAACA-GCA-----ACGAGAA-TCT.............................................................................................................................................................................................	27	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...............................AGAAGG---AAGAGGAGCTGCAAAGTC.................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	0	1	0	0	0
...............................................................ACTGAGCAGCAGCTCCAAC---------------------------AGATCCA---....................................................................................................................................................................................................................................................................	26	1	1.00	1	0	1	0	0	0	0	0	0	0	0
....................................................................GCAGCAGCTCCAAC---------------------------AGATCCA---....................................................................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0
................................................................................................................................................................................................ACA-----ACAATCCCAACAGGAGCTCC...............................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	1	0	0	0	0
....CAGAAGCGCCTCG--ACTTCTACC...............................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	1	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................TCAAACTC-------------------AACAACAACAACAGA........	23	1	1.00	1	0	1	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................GGAGCTCCAGCAGAGTCAGATGTCG..............................................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	1	0	0	0
...................................................................................................................A---GCAGAATCAACGGGAACT..................................................................................................................................................................................................................................................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.........................ACCACAAGAAGG---AAGAGGAGCTGCA......................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	1	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................AGCAGAGTCAGATGTCGCAAC..........................................................................................................................................	21	1	1.00	1	0	0	0	1	0	0	0	0	0	0
...........................................................................................................................AATCAACGGGAACTCCAGCA............................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	1	0	0	0	0
.........................ACCACAAGAAGG---AAGAGGAGCT.........................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	1	0	0	0	0	0	0
...........................................................................................................................................................TCAGCTGCAGCAACA-GCA-----ACGAGAA-TCTC............................................................................................................................................................................................	29	1	1.00	1	0	0	0	0	0	1	0	0	0	0
..................................................................................................................................................................................................................CAGGAGCTCCAGCAGAGTCAGATG.................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	0	1	0	0	0
..................................................................................................................................................................................................................................................GCAGATGCAAAAA---ACTC---AACAATC...........................................................................................................	24	1	1.00	1	0	0	0	1	0	0	0	0	0	0
.....................................................................................................................................................AATAAATCAGCTGCAGCAACA-................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	1	0	0	0	0
.........................................................................................................................AGAATCAACGGGAACTCCAGCA............................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	1	0
........................................AAGAGGAGCTGCAAAGTCAACAAACT.........................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	0	1	0	0	0
..............................................................................................................................................................................................................................................................A---ACTC---AACAATCTAAACAGCA..................................................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.....................................................................................................................................................AATAAATCAGCTGCAGCAAC..................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	1	0	0	0	0	0	0
.......AAGCGCCTCG--ACTTCTACCAC.............................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	1	0	0	0	0
.........GCGCCTCG--ACTTCTACCA..............................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	1	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................AAC------------------------------------------TCTATCAAACTC-------------------AACAACAACA.............	25	1	1.00	1	0	1	0	0	0	0	0	0	0	0
........AGCGCCTCG--ACTTCTACCACA............................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	1	0	0	0	0
............................ACAAGAAGG---AAGAGGAGCTGCAAAG...................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	1	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................AAC------------------------------------------TCTATCAAACTC-------------------AACAACAACAAC...........	27	1	1.00	1	0	0	0	1	0	0	0	0	0	0
................................................................................AC---------------------------AGATCCA---GCAGAATCAACGGGAACT..................................................................................................................................................................................................................................................	27	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..........................................................................................................................GAATCAACGGGAACTCCAGCA............................................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0
........................................AAGAGGAGCTGCAAAGTCAACAAAC..........................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	1	0	0	0	0
.............................................................................................................................................................................................................................................................................ATCTAAACAGCAAC------------------------------------------TCTATC................................................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................CCAGCAGAGTCAGATGTCGCAAC..........................................................................................................................................	23	1	1.00	1	0	0	0	0	0	0	1	0	0	0
................................GAAGG---AAGAGGAGCTGCAA.....................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................AATCCCAACAGGAGCTCCAGC............................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................AGCAGAGTCAGATGTCGCAACAGCA......................................................................................................................................	25	1	1.00	1	0	0	0	1	0	0	0	0	0	0
......................................................................................................................................................................................................................AGCTCCAGCAGAGTCAGATGTCGCA............................................................................................................................................	25	1	1.00	1	0	1	0	0	0	0	0	0	0	0
............................................................................................................................ATCAACGGGAACTCCAGCAGAATCAAAT...................................................................................................................................................................................................................................	28	1	1.00	1	0	0	0	0	0	0	0	0	1	0
......GAAGCGCCTCG--ACTTCTACCACA............................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	1	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................GGAGCTCCAGCAGAGTCAGATGTCGCAAC..........................................................................................................................................	29	1	1.00	1	0	0	0	1	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................ATCTAAACAGCAAC------------------------------------------TCTATCAAACTC-------------------.......................	26	1	1.00	1	0	0	0	1	0	0	0	0	0	0
......GAAGCGCCTCG--ACTTCTACCACAAGA.........................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	1	0	0	0	0	0	0
...........................................AGGAGCTGCAAAGTCAACAAACT.........................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...................................................................................................................................................CAAATAAATCAGCTGCAGCAAC..................................................................................................................................................................................................................	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................AATCTAAACAGCAAC------------------------------------------TCTATCA...............................................	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..........................................GAGGAGCTGCAAAGTCAAC..............................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.....................................................AAGTCAACAAACTGAGCAGCAGC...............................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	1	0	0	0	0	0	0
.................................AAGG---AAGAGGAGCTGCAAAG...................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.....................................................................................................................................................AATAAATCAGCTGCAGCAACA-GCA-----AC......................................................................................................................................................................................................	26	1	1.00	1	0	0	0	1	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................A---ACTC---AACAATCTAAACAGCAAC------------------------------------------T.....................................................	24	1	1.00	1	0	1	0	0	0	0	0	0	0	0
........................................................................CAGCTCCAAC---------------------------AGATCCA---GCAGA...............................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	1	0	0	0	0
................................GAAGG---AAGAGGAGCTGCAAAGTCAACA.............................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...............................AGAAGG---AAGAGGAGCTGCA......................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................TCCAGCAGAGTCAGATGTCG..............................................................................................................................................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................CA-----ACAATCCCAACAGGAGCTCCAGCA...........................................................................................................................................................	26	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.............................................................................................................................TCAACGGGAACTCCAGCAGAATC.......................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	1	0	0	0	0	0	0
.........................ACCACAAGAAGG---AAGAGGAGCTGCAAA....................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	0	1	0	0	0	0	0	0
...............................................................ACTGAGCAGCAGCTCCAAC---------------------------AGATCC........................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	1	0	0	0	0	0	0
..................................AGG---AAGAGGAGCTGCAAAGTCA................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0
............................ACAAGAAGG---AAGAGGAGCTGC.......................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0

droPer2

GCAGCAGCAGCAGCAGT--ACCAGCAGCA---GCAGG---AGCAGGAGCAGCAGCAGTACCAGAAGCAGCAGCAGCAGCAGCAGTACCAGAAGCAGCAGCATCAGCAGCAGCAGCA---GCAGTACCAACAGCAGCAGGAGCAGGAGCAGCA------------GCAGTGGGAACA------------------------------------------------GCAGCAGCAACGGCAGCGGCAGCAGTACCAGCAGCAGC---GGCAGTGCCAGCAGCAG----------------------------------GAGCAGCAG---------------------------CCGCTGCAGCAGCAGCA---------G	Size	Hit Count	Total Norm	Total	M021 Embryo	M042 Female-body	V042 Embryo	V050 Head	V057 Head	V111 Male-body
...GCAGCAGCAGCAGT--ACCAGC..................................................................................................................................................................................................................................................................................................................................................................	20	4	0.25	1	0	0	1	0	0	0
....................................................................................................ATCAGCAGCAGCAGCA---GCA.................................................................................................................................................................................................................................................................	19	20	0.05	1	0	0	1	0	0	0

droWil2

ACAGCAGCAACAATTGC--AGCAACAACAGC---AAC---AGCAGCAACA---ATGGCAGCAACAACAACAGCAACAACAACTGCAGCAGCAACAACAACAGCAGCAACAACAACA---GCAGCAGCAACAACAGCATCAGC---------AACAGCAACAGCAGCAACGAATGCA------------------------------------------------ACAGCAACAGCAACA------GCAGCAACAA-------------------------------TTGCAGCAACAACAGCAACAGCAGCAACAACAACAGC------------------------AA---CAACAACAACAGCAGCA---------A	Size	Hit Count	Total Norm	Total	M020 Head	M045 Female-body	V117 Male-body	V118 Embryo	V119 Head
......................AACAACAGC---AAC---AGCAGCAACA---ATGG..................................................................................................................................................................................................................................................................................................................................	26	20	0.35	7	0	7	0	0	0
...................AGCAACAACAGC---AAC---AGCAGCAA...........................................................................................................................................................................................................................................................................................................................................	23	20	0.15	3	0	3	0	0	0
..................................................................................................................................................................................................................................................................................................AGCAACAACAGCAACAGCAGCAA..................................................................	23	20	0.15	3	0	3	0	0	0
.....................................................................................................................................................................................................................................AACAGCAACA------GCAGCAACA.............................................................................................................................	19	20	0.15	3	0	0	0	3	0
.....................................................................................................GCAGCAACAACAACA---GCA.................................................................................................................................................................................................................................................................	18	20	0.15	3	0	0	0	3	0
........AACAATTGC--AGCAACAACAG.............................................................................................................................................................................................................................................................................................................................................................	20	20	0.15	3	0	3	0	0	0
........AACAATTGC--AGCAACAACAGC---A........................................................................................................................................................................................................................................................................................................................................................	22	20	0.15	3	0	1	0	2	0
..........................................................................................................................................................................................................................................................AACAA-------------------------------TTGCAGCAACAACAG..............................................................................	20	20	0.15	3	0	3	0	0	0
.....................................................................................................................................................................CAACGAATGCA------------------------------------------------ACAGCAACAGCAAC.............................................................................................................................................	25	8	0.13	1	0	1	0	0	0
.........................................................................................................................................TCAGC---------AACAGCAACAGCAGCAACGAA...............................................................................................................................................................................................................	26	9	0.11	1	0	0	0	1	0
...............................................................................................................................................................................................................................................................................................TGCAGCAACAACAGCAACAGCAG.....................................................................	23	20	0.10	2	0	2	0	0	0
.........................................................................................GCAACAACAACAGCAGCAACA.............................................................................................................................................................................................................................................................................	21	20	0.10	2	0	0	0	2	0
..................................................................................................................................................................................................................................................................................................AGCAACAACAGCAACAGCAG.....................................................................	20	20	0.10	2	0	2	0	0	0
...................AGCAACAACAGC---AAC---AGCAG..............................................................................................................................................................................................................................................................................................................................................	20	20	0.10	2	0	2	0	0	0
..............TGC--AGCAACAACAGC---AAC---AGCAG..............................................................................................................................................................................................................................................................................................................................................	23	20	0.10	2	0	2	0	0	0
..................................................................................................................CA---GCAGCAGCAACAACAGCA..................................................................................................................................................................................................................................................	20	20	0.10	2	0	2	0	0	0
..............................................................................................................ACAACA---GCAGCAGCAACAAC......................................................................................................................................................................................................................................................	20	20	0.10	2	0	0	0	0	2
.........................AACAGC---AAC---AGCAGCAACA---ATGG..................................................................................................................................................................................................................................................................................................................................	23	20	0.10	2	0	2	0	0	0
.........................AACAGC---AAC---AGCAGCAACA---ATGGC.................................................................................................................................................................................................................................................................................................................................	24	20	0.10	2	0	2	0	0	0
.............................................CAACA---ATGGCAGCAACAACAACAG...................................................................................................................................................................................................................................................................................................................	24	20	0.10	2	0	1	0	1	0
...........................................................................................................................................AGC---------AACAGCAACAGCAGCAACG.................................................................................................................................................................................................................	22	11	0.09	1	0	0	0	1	0
..............................................................................................................................CAACAACAGCATCAGC---------AACAGCAACAG.........................................................................................................................................................................................................................	27	12	0.08	1	0	1	0	0	0
.................................................................................................................................CAACAGCATCAGC---------AACAGCAACAGCAG......................................................................................................................................................................................................................	27	12	0.08	1	0	0	0	1	0
...............................................................................................................CAACA---GCAGCAGCAACAACAGCATCAG..............................................................................................................................................................................................................................................	27	12	0.08	1	0	0	0	1	0
..............................................................................................................................CAACAACAGCATCAGC---------AACAGC..............................................................................................................................................................................................................................	22	14	0.07	1	0	0	0	1	0
..................................................................................TGCAGCAGCAACAACAACAGCAGCAACA.............................................................................................................................................................................................................................................................................	28	14	0.07	1	0	0	0	1	0
............................................................................AACAACTGCAGCAGCAACAACAACA......................................................................................................................................................................................................................................................................................	25	15	0.07	1	0	1	0	0	0
..................................................................................................................................................................................................................................AGCAACAGCAACA------GCAGCAACAA-------------------------------TT...........................................................................................	25	16	0.06	1	0	0	0	1	0
.................................................................................................................................CAACAGCATCAGC---------AACAGC..............................................................................................................................................................................................................................	19	17	0.06	1	0	0	0	1	0
.....................................................................................................................................AGCATCAGC---------AACAGCAACAGCAG......................................................................................................................................................................................................................	23	17	0.06	1	0	1	0	0	0
............................................................................................................................................................................TGCA------------------------------------------------ACAGCAACAGCAACA------GCAGC.................................................................................................................................	24	17	0.06	1	0	1	0	0	0
........................................................................................................................................ATCAGC---------AACAGCAACAGCAGCAAC..................................................................................................................................................................................................................	24	19	0.05	1	0	1	0	0	0
..........................................................................................................................................................................................................................................................AACAA-------------------------------TTGCAGCAACAACAGCA............................................................................	22	20	0.05	1	0	1	0	0	0
....................................................................................................AGCAGCAACAACAACA---GCAG................................................................................................................................................................................................................................................................	20	20	0.05	1	0	0	0	1	0
......................AACAACAGC---AAC---AGCAGCAACA---ATGGC.................................................................................................................................................................................................................................................................................................................................	27	20	0.05	1	0	1	0	0	0
..................................................................................................ACAGCAGCAACAACAACA---GCA.................................................................................................................................................................................................................................................................	21	20	0.05	1	0	0	0	0	1
.................................................A---ATGGCAGCAACAACAACAGCA.................................................................................................................................................................................................................................................................................................................	22	20	0.05	1	0	1	0	0	0
.........................................................................AACAACAACTGCAGCAGCAAC.............................................................................................................................................................................................................................................................................................	21	20	0.05	1	0	1	0	0	0
......................................................TGGCAGCAACAACAACAGCAACAACAAC.........................................................................................................................................................................................................................................................................................................	28	20	0.05	1	0	1	0	0	0
..............TGC--AGCAACAACAGC---AAC---AGCAGC.............................................................................................................................................................................................................................................................................................................................................	24	20	0.05	1	0	1	0	0	0
..............TGC--AGCAACAACAGC---AAC---AGCA...............................................................................................................................................................................................................................................................................................................................................	22	20	0.05	1	0	1	0	0	0
..........................................................AGCAACAACAACAGCAACAACAACTGCAG....................................................................................................................................................................................................................................................................................................	29	20	0.05	1	0	1	0	0	0
............................................................................................................................................................................................................................................................................................................................................................A---CAACAACAACAGCAGCA---------A	19	20	0.05	1	0	0	0	1	0
.............TTGC--AGCAACAACAGC---AAC---AGCAG..............................................................................................................................................................................................................................................................................................................................................	24	20	0.05	1	0	0	0	1	0
..........................................................................................................................................................................................................................................................AACAA-------------------------------TTGCAGCAACAACAGCAAC..........................................................................	24	20	0.05	1	0	1	0	0	0
...............................................................CAACAACAGCAACAACAACTGCAGC...................................................................................................................................................................................................................................................................................................	25	20	0.05	1	0	1	0	0	0
........AACAATTGC--AGCAACAACAGC---.........................................................................................................................................................................................................................................................................................................................................................	21	20	0.05	1	0	1	0	0	0
......................................................TGGCAGCAACAACAACAGCAACAA.............................................................................................................................................................................................................................................................................................................	24	20	0.05	1	0	0	0	1	0
.......................................................GGCAGCAACAACAACAGCAAC...............................................................................................................................................................................................................................................................................................................	21	20	0.05	1	0	1	0	0	0
...........AATTGC--AGCAACAACAGC---AAC---AGC................................................................................................................................................................................................................................................................................................................................................	24	20	0.05	1	0	1	0	0	0
.................................................A---ATGGCAGCAACAACAACAGCAACA..............................................................................................................................................................................................................................................................................................................	25	20	0.05	1	0	1	0	0	0
.........................................................................................................................................................................................................................................................CAACAA-------------------------------TTGCAGCAACAACAGCAA...........................................................................	24	20	0.05	1	0	0	0	1	0
.............................................................................................................AACAACA---GCAGCAGCAACAA.......................................................................................................................................................................................................................................................	20	20	0.05	1	0	0	0	1	0
.............................................CAACA---ATGGCAGCAACAACAACAGC..................................................................................................................................................................................................................................................................................................................	25	20	0.05	1	0	1	0	0	0
................................................................AACAACAGCAACAACAACTGCAG....................................................................................................................................................................................................................................................................................................	23	20	0.05	1	0	1	0	0	0
........................................................................................................................................................................................................................................AGCAACA------GCAGCAACAA-------------------------------TTG..........................................................................................	20	20	0.05	1	0	1	0	0	0
...............................................................................................................................................................................A------------------------------------------------ACAGCAACAGCAACA------GCAGC.................................................................................................................................	21	20	0.05	1	0	0	0	0	1
...............................................................................................................................................................................................................................................................................................TGCAGCAACAACAGCAACAGCAGC....................................................................	24	20	0.05	1	0	1	0	0	0
..........................................................................................................................................................................................................................................................AACAA-------------------------------TTGCAGCAACAACAGCAA...........................................................................	23	20	0.05	1	0	1	0	0	0
...........................................AGCAACA---ATGGCAGCAACAACAACA....................................................................................................................................................................................................................................................................................................................	25	20	0.05	1	0	0	0	1	0
..............................................AACA---ATGGCAGCAACAACAACAGC..................................................................................................................................................................................................................................................................................................................	24	20	0.05	1	0	0	0	1	0
....................................C---AGCAGCAACA---ATGGCAGCAA............................................................................................................................................................................................................................................................................................................................	21	20	0.05	1	0	0	0	1	0
....................................................................................................................................................................................................................................................................................................................AGCAACAACAACAGC------------------------AA---CAA........................	20	20	0.05	1	0	1	0	0	0
................................................................................................................................................................................................................................................................................................GCAGCAACAACAGCAACAG........................................................................	19	20	0.05	1	0	1	0	0	0
.............................................................................................................................................................................................................................................................................................................CAACAGCAGCAACAACAACAGC------------------------................................	22	20	0.05	1	0	0	0	1	0
.......................ACAACAGC---AAC---AGCAGCAACA---ATGG..................................................................................................................................................................................................................................................................................................................................	25	20	0.05	1	0	1	0	0	0
..............................................AACA---ATGGCAGCAACAACAACAGCA.................................................................................................................................................................................................................................................................................................................	25	20	0.05	1	0	0	0	1	0
.............................................................AACAACAACAGCAACAACAACTGC......................................................................................................................................................................................................................................................................................................	24	20	0.05	1	0	1	0	0	0
.................................................A---ATGGCAGCAACAACAACAGC..................................................................................................................................................................................................................................................................................................................	21	20	0.05	1	0	1	0	0	0
........................CAACAGC---AAC---AGCAGCAACA---ATGG..................................................................................................................................................................................................................................................................................................................................	24	20	0.05	1	0	0	0	1	0
................................................................AACAACAGCAACAACAACTGCAGCA..................................................................................................................................................................................................................................................................................................	25	20	0.05	1	0	0	0	1	0
...............GC--AGCAACAACAGC---AAC---AG.................................................................................................................................................................................................................................................................................................................................................	19	20	0.05	1	0	1	0	0	0
..............................................................................................................................................................................................................................................................................................TTGCAGCAACAACAGCAACAGCAGC....................................................................	25	20	0.05	1	0	1	0	0	0
.........................................................................................................................................................................................................................................................................................................................CAACAACAGC------------------------AA---CAACAACA...................	20	20	0.05	1	0	1	0	0	0
................................................................................................CAACAGCAGCAACAACAACA---GCAGC...............................................................................................................................................................................................................................................................	25	20	0.05	1	0	0	0	1	0
......................................................TGGCAGCAACAACAACAGCAACAACAA..........................................................................................................................................................................................................................................................................................................	27	20	0.05	1	0	0	0	1	0
...............................................................................................................................................................................................................................................................................................TGCAGCAACAACAGCAACAGCA......................................................................	22	20	0.05	1	0	1	0	0	0
..............................................................................................................................................................................................................................................................................................TTGCAGCAACAACAGCAACAGCAG.....................................................................	24	20	0.05	1	0	0	0	1	0
.......CAACAATTGC--AGCAACAACAGC---AA.......................................................................................................................................................................................................................................................................................................................................................	24	20	0.05	1	0	0	0	1	0
............................AGC---AAC---AGCAGCAACA---ATGGCAG...............................................................................................................................................................................................................................................................................................................................	23	20	0.05	1	0	1	0	0	0
...........................................................................................................................................AGC---------AACAGCAACAGCAGCA....................................................................................................................................................................................................................	19	20	0.05	1	0	1	0	0	0
.................................................A---ATGGCAGCAACAACAACAGCAACAAC............................................................................................................................................................................................................................................................................................................	27	20	0.05	1	0	1	0	0	0
.............................................................................................................................................................................................................................................................AA-------------------------------TTGCAGCAACAACAGCAACAGC.......................................................................	24	20	0.05	1	0	1	0	0	0
.............................................................AACAACAACAGCAACAACAACTGCAGC...................................................................................................................................................................................................................................................................................................	27	20	0.05	1	0	1	0	0	0
..............................................................................................................................................................................CA------------------------------------------------ACAGCAACAGCAACA------GCAG..................................................................................................................................	21	20	0.05	1	0	1	0	0	0
..........................................................................................................................................................................................................................................................AACAA-------------------------------TTGCAGCAACAACAGC.............................................................................	21	20	0.05	1	0	1	0	0	0
.............................................................AACAACAACAGCAACAACAACT........................................................................................................................................................................................................................................................................................................	22	20	0.05	1	0	1	0	0	0
........................CAACAGC---AAC---AGCAGCAACA---ATGGC.................................................................................................................................................................................................................................................................................................................................	25	20	0.05	1	0	1	0	0	0
........AACAATTGC--AGCAACAACAGC---AA.......................................................................................................................................................................................................................................................................................................................................................	23	20	0.05	1	0	1	0	0	0
........AACAATTGC--AGCAACAACAGC---AAC---...................................................................................................................................................................................................................................................................................................................................................	24	20	0.05	1	0	1	0	0	0

droVir3

GCAGCAGCAACAACATT--------TTCAACAGCAGCAGCAGCAGCAGCA---GCAACAGCAACAT------------------------------TTGCAGCAACATCAAAAGCA---GT------------------------------------TACAACAGCAACAGCAACAGCATCAACAG-AAGCAGCTTC--A------ACAGCAGCAGCAGCAGCATCAGCAACAGCAACAGCAGCAGCAGCAGCAG-------------------------------TTACAACAACAACAGCAACAACAGCAACAACAACAA---------------CAACAGGCTCAACATCATCATCAGCAGCAGCA---------A	Size	Hit Count	Total Norm	Total	M027 Male-body	M028 Head	M047 Female-body	M061 Embryo	SRR060654 Ovary	SRR060655 Testis	SRR060656 Ovary	SRR060657 Testis	SRR060658 Ovary	SRR060659 Testis	SRR060660 Ovary	SRR060661 Embryo	SRR060662 Embryo	SRR060663 Embryo	SRR060664 Male-body	SRR060665 Female-body	SRR060666 Male-body	SRR060667 Female-body	SRR060668 Male-body	SRR060669 Female-body	SRR060670 Testis	SRR060671 Male-body	SRR060672 Female-body	SRR060673 Ovary	SRR060674 Ovary	SRR060675 Ovary	SRR060676 Ovary	SRR060677 Ovary	SRR060678 Testis	SRR060679 Testis	SRR060680 Testis	SRR060681 Testis	SRR060682 Embryo	SRR060683 Testis	SRR060684 Embryo	SRR060685 Embryo	SRR060686 Embryo	SRR060687 Embryo	SRR060688 Ovary	SRR060689 Testis	SRR1106712 embryo_0-2h	SRR1106713 embryo_0-2h	SRR1106714 embryo_2-4h	SRR1106715 embryo_4-6h	SRR1106716 embryo_4-6h	SRR1106717 embryo_6-8h	SRR1106718 embryo_6-8h	SRR1106719 embryo_8-10h	SRR1106720 embryo_8-10h	SRR1106721 embryo_10-12h	SRR1106722 embryo_10-12h	SRR1106723 embryo_12-14h	SRR1106724 embryo_12-14h	SRR1106725 embryo_14-16h	SRR1106726 embryo_14-16h	SRR1106727 larvae	SRR1106728 larvae	SRR1106729 mixed whole adult body	SRR1106730 embryo_16-30h	V047 Embryo	V053 Head	V116 Male-body	GSM1528803 follicle cells
.........................................................................................................................................................................................................................................................................................................................CAACAACAA---------------CAACAGGCTCAA..............................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................AG-AAGCAGCTTC--A------ACAGCAGCA....................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................ACAGCAACAT------------------------------TTGCAGCAACATCAAA...........................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................AACAG-AAGCAGCTTC--A------ACA..........................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................AGCTTC--A------ACAGCAGCAGCA.................................................................................................................................................................	19	2	1.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................AACAGCATCAACAG-AAGCAG..........................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................AACAGCATCAACAG-AAGCAGCTT.......................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.CAGCAGCAACAACATT--------TTCAACA...........................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........ACAACATT--------TTCAACAGCAGCAGCA..................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................CAGCAGCAGCAG-------------------------------TTACAACAACAACAT..............................................................................	27	2	0.50	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................CTTC--A------ACAGCAGCAGCAGCA..............................................................................................................................................................	20	5	0.20	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................CAACAGCAACAGCAACAGCATC......................................................................................................................................................................................................	22	10	0.20	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................AGCAACAGCAGCAGCAGCA................................................................................................................................	19	20	0.20	4	0	0	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............TT--------TTCAACAGCAGCAGCAGCAAA.............................................................................................................................................................................................................................................................................................................................................	23	9	0.11	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................AGCAACAACAACAA---------------CAACAGGC..................................	22	10	0.10	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................AGCAGCAGCAGCAGCATCA........................................................................................................................................................	19	20	0.10	2	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................AGCAGCAGCA---GCAACAGCAA............................................................................................................................................................................................................................................................................................................................	20	20	0.10	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................GCAGCATCAGCAACAGCAACA............................................................................................................................................	21	20	0.10	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................AGCAGCAGCAGCAGCATCAG.......................................................................................................................................................	20	20	0.10	2	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................CAACATCATCATCAGCAGC..............	19	11	0.09	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................CAACAGCAACAGCAACAGCAT.......................................................................................................................................................................................................	21	12	0.08	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................ATCAGCAACAGCAACAGCAGC.......................................................................................................................................	21	15	0.07	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................AGCATCAGCAACAGCAACAGCA.........................................................................................................................................	22	16	0.06	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................CAGCATCAGCAACAGCAACAG...........................................................................................................................................	21	18	0.06	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................CAGCAGCATCAGCAACAGCAACA............................................................................................................................................	23	19	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................CAACAGCAACAGCAACAGC.........................................................................................................................................................................................................	19	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................AGCAGCAGCAGCA---GCAACAGCAA............................................................................................................................................................................................................................................................................................................................	23	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................GCAGCAGCAGCAGCATCAGCA.....................................................................................................................................................	21	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................GCAACAACAGCAACAACAACAA---------------CA........................................	24	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................ACAACAACAACAGCAACAACAGCAACAAC..............................................................	29	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................ACAACAGCAACAGCAACAGC.........................................................................................................................................................................................................	20	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................CAGCAGCATCAGCAACAGCAAT.............................................................................................................................................	22	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................ACAGCAACAGCAGCAGCAGCA................................................................................................................................	21	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................AGCAGCAGCAGCAG-------------------------------TTAC.........................................................................................	18	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................CAGCAGCAGCAGCAGCATCAGCA.....................................................................................................................................................	23	20	0.05	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................AGCAGCATCAGCAACAGCA...............................................................................................................................................	19	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................AGCATCAGCAACAGCAACA............................................................................................................................................	19	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................CAACAGCAACAGCAGCAGC....................................................................................................................................	19	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................CAACAACAACAA---------------CAACAGGC..................................	20	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................C--A------ACAGCAGCAGCAGCAGCATCA........................................................................................................................................................	23	20	0.05	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................ACAACAGCAACAACAGCAACA................................................................	21	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droMoj3

CAACAGAAAAAGCATCAGCTGCAACAGCAACAGCAGC---AACAGCAGCAACAGCAGCAGCAGCAACAGCAGCAGCAACAGCAGCAGCAGCAACAGCAGAAGCAGCAAC------------AGCAGCAACAGCAACAGCAGCAACAGCAGCAGCAACAACAGCAGCAGCAACAGCA------------------------------------------------ACAGCAGCAGCAGCAGCAGCAACAGCAGCAGCAGCAAC---AGCAGCAGCAGCAGCAA----------------------------------TAGCGGC------------------------AA---CAGCCACAGCATCAGCA---------A	Size	Hit Count	Total Norm	Total	M046 Female-body	V041 Embryo	V049 Head	V056 Head	M060 Embryo	V110 Male-body
..................................................................................AGCAGCAGCAACAGCAGAAGCAGCA................................................................................................................................................................................................................................................................................	25	4	0.25	1	0	0	0	0	0	1
...........................................................................................AACAGCAGAAGCAGCAAC------------AGCA..............................................................................................................................................................................................................................................................	22	6	0.17	1	0	0	0	0	1	0
.............................................................................................................................................................AACAGCAGCAGCAACAGCA------------------------------------------------A..........................................................................................................................................................	20	20	0.15	3	3	0	0	0	0	0
............................................................................................ACAGCAGAAGCAGCAAC------------AGC...............................................................................................................................................................................................................................................................	20	7	0.14	1	0	0	0	0	0	1
...........................................................................................................................................................................................................................................................GCAGCAGCAAC---AGCAGCAGCAGC......................................................................................................	23	20	0.10	2	2	0	0	0	0	0
........................................................................................................................................................................CAACAGCA------------------------------------------------ACAGCAGCAGCAGC.............................................................................................................................................	22	20	0.10	2	2	0	0	0	0	0
....................................................................................................................................................................GCAGCAACAGCA------------------------------------------------ACAGCAGCA..................................................................................................................................................	21	20	0.10	2	2	0	0	0	0	0
..............................................................................................................................CAACAGCAACAGCAGCAACA.........................................................................................................................................................................................................................................	20	20	0.10	2	2	0	0	0	0	0
.........................................................................................................................................................................AACAGCA------------------------------------------------ACAGCAGCAGCAGCA............................................................................................................................................	22	20	0.10	2	2	0	0	0	0	0
................................................................................................................................................................AGCAGCAGCAACAGCA------------------------------------------------ACA........................................................................................................................................................	19	20	0.10	2	0	0	0	2	0	0
...............................................................................................................................................ACAGCAGCAGCAACAACAGC........................................................................................................................................................................................................................	20	20	0.10	2	0	0	0	0	2	0
....................................................................................................................................................AGCAGCAACAACAGCAGCAGC..................................................................................................................................................................................................................	21	20	0.10	2	2	0	0	0	0	0
....................................................................................................................................................................GCAGCAACAGCA------------------------------------------------ACAGCAGCAGC................................................................................................................................................	23	20	0.10	2	2	0	0	0	0	0
.......................................................................................CAGCAACAGCAGAAGCAGCA................................................................................................................................................................................................................................................................................	20	18	0.06	1	0	0	0	0	1	0
..............................................................................................................................CAACAGCAACAGCAGCAACAG........................................................................................................................................................................................................................................	21	20	0.05	1	0	0	0	0	1	0
...........................................................................................................................................AGCAACAGCAGCAGCAACAACAGCAGC.....................................................................................................................................................................................................................	27	20	0.05	1	0	0	0	0	1	0
.....................................................GCAGCAGCAGCAACAGCAGC..................................................................................................................................................................................................................................................................................................................	20	20	0.05	1	1	0	0	0	0	0
...................................................................................................................................................................AGCAGCAACAGCA------------------------------------------------ACAGCA.....................................................................................................................................................	19	20	0.05	1	1	0	0	0	0	0
....................................................AGCAGCAGCAGCAACAGCAGCA.................................................................................................................................................................................................................................................................................................................	22	20	0.05	1	0	0	0	0	1	0
.....................................................GCAGCAGCAGCAACAGCAGCA.................................................................................................................................................................................................................................................................................................................	21	20	0.05	1	1	0	0	0	0	0
.......................................................................................................................................CAGCAGCAACAGCAGCAGCAAC..............................................................................................................................................................................................................................	22	20	0.05	1	0	0	0	0	0	1
........................................AACAGCAGCAACAGCAGCAGC..............................................................................................................................................................................................................................................................................................................................	21	20	0.05	1	0	0	0	0	0	1
.................................CAGC---AACAGCAGCAACAGCAGCAGCAG............................................................................................................................................................................................................................................................................................................................	27	20	0.05	1	1	0	0	0	0	0
...................TGCAACAGCAACAGCAGC---...................................................................................................................................................................................................................................................................................................................................................	18	20	0.05	1	1	0	0	0	0	0
.....................................................GCAGCAGCAGCAACAGCAGCAGCAAC............................................................................................................................................................................................................................................................................................................	26	20	0.05	1	0	0	0	0	1	0
................................................................................................................................ACAGCAACAGCAGCAACAGCAGC....................................................................................................................................................................................................................................	23	20	0.05	1	1	0	0	0	0	0
.....................................................................................................................................................................................................................................AGCAGCAGCAGCAGCAACAGCAGCAGCA..........................................................................................................................	28	20	0.05	1	0	0	0	0	1	0
...........................CAACAGCAGC---AACAGCAGCAACAGC....................................................................................................................................................................................................................................................................................................................................	25	20	0.05	1	0	0	0	0	1	0
...........................................................................................................................................................................CAGCA------------------------------------------------ACAGCAGCAGCAGCAGCAGCAAC....................................................................................................................................	28	20	0.05	1	0	0	0	0	1	0
.............................................................................................................................GCAACAGCAACAGCAGCAACAGCAG.....................................................................................................................................................................................................................................	25	20	0.05	1	1	0	0	0	0	0
.......................................................................GCAGCAACAGCAGCAGCAG.................................................................................................................................................................................................................................................................................................	19	20	0.05	1	1	0	0	0	0	0
....................GCAACAGCAACAGCAGC---AACAGCAG...........................................................................................................................................................................................................................................................................................................................................	25	20	0.05	1	1	0	0	0	0	0
....................................................................................................................................................AGCAGCAACAACAGCAGCAGCAACAGC............................................................................................................................................................................................................	27	20	0.05	1	0	1	0	0	0	0
.......................................................................................................................................................AGCAACAACAGCAGCAGCAACAGC............................................................................................................................................................................................................	24	20	0.05	1	1	0	0	0	0	0
.................................................................................................................................................AGCAGCAGCAACAACAGCAGCAGCAA................................................................................................................................................................................................................	26	20	0.05	1	0	0	0	0	1	0
..........................................................................................................AAC------------AGCAGCAACAGCAACAGCA...............................................................................................................................................................................................................................................	22	20	0.05	1	1	0	0	0	0	0
.............................................................................................................................................................................................................................................................AGCAGCAAC---AGCAGCAGCAGCA.....................................................................................................	22	20	0.05	1	1	0	0	0	0	0
.....................................................................................................................................................................................................................................AGCAGCAGCAGCAGCAACAGC.................................................................................................................................	21	20	0.05	1	1	0	0	0	0	0
...............................................................................................................................................ACAGCAGCAGCAACAACA..........................................................................................................................................................................................................................	18	20	0.05	1	0	1	0	0	0	0
............................................................................................................................AGCAACAGCAACAGCAGCAACAGCAG.....................................................................................................................................................................................................................................	26	20	0.05	1	1	0	0	0	0	0
...................TGCAACAGCAACAGCAGC---AAC................................................................................................................................................................................................................................................................................................................................................	21	20	0.05	1	0	0	0	0	1	0
........................................................................................................................................................................CAACAGCA------------------------------------------------ACAGCAGCAGCAGCAGCAGC.......................................................................................................................................	28	20	0.05	1	1	0	0	0	0	0
............................................................................................................................................................CAACAGCAGCAGCAACAGCA------------------------------------------------...........................................................................................................................................................	20	20	0.05	1	0	0	0	0	1	0
.....................................................................................................GCAGCAAC------------AGCAGCAACAGCAACAGCA...............................................................................................................................................................................................................................................	27	20	0.05	1	0	0	0	0	1	0
.....................................................................................................................................AACAGCAGCAACAGCAGCAGCAAC..............................................................................................................................................................................................................................	24	20	0.05	1	0	0	0	0	1	0
.............................................................AGCAACAGCAGCAGCAACA...........................................................................................................................................................................................................................................................................................................	19	20	0.05	1	1	0	0	0	0	0
................................................CAACAGCAGCAGCAGCAACAGCAGCA.................................................................................................................................................................................................................................................................................................................	26	20	0.05	1	0	0	0	0	1	0
......................................................................................................................................ACAGCAGCAACAGCAGCAGCAAC..............................................................................................................................................................................................................................	23	20	0.05	1	1	0	0	0	0	0
...........................................................................................................................................................ACAACAGCAGCAGCAACAGCA------------------------------------------------ACA........................................................................................................................................................	24	20	0.05	1	1	0	0	0	0	0
.....................................................................CAGCAGCAACAGCAGCAGCAGC................................................................................................................................................................................................................................................................................................	22	20	0.05	1	0	1	0	0	0	0
....................................................................................................................................................................................................................................CAGCAGCAGCAGCAGCAACAGCAGC..............................................................................................................................	25	20	0.05	1	1	0	0	0	0	0
.....................CAACAGCAACAGCAGC---AACAGCAGC..........................................................................................................................................................................................................................................................................................................................................	25	20	0.05	1	1	0	0	0	0	0

droGri2

CAATCAGGTAATAATGG--TTCACTACTACTAGCTAA---TAGTCAAATGCCCG-CACAGCAGCAGCAGCAGGCAAGTCAGAGTCAAA------------------------GTCA---AA-------ACAGCAACAGCAG---------CAGCAGCAACAACAGTAATGTTGTCA------------------------A--TGCACAGCAGCAGCAACAGCAGCAGCAACTTGCACAACAGCAGCAGCATAGC---GCACAGCAGCAACTT-------------GCACAGCAACAACAACAGCAGC---------AGC---------------------------AA---CAACAACAGCAGCAGCA---------A	Size	Hit Count	Total Norm	Total	M041 Female-body	V109 Male-body
.................................................................................................................................................................................................................GCAGCAGCAACAGCAGCAGCAAC...................................................................................................................................................	23	20	0.05	1	1	0

dsi_13144

2r:12321196-12321345 -

Candidate

Unknown

Predicted structure

Flybase annnotation

Repeatable elements

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads

-16.0	-16.0	-15.8