ID:

dsi_13131

 Coordinate:

2r:3448712-3448861 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

Flybase annnotation

intergenic

No Repeatable elements found

Sense Strand Reads

TAGGCGCAGCCGCTTCTGTAAAAGCTACTTTAGTGACTAACTAATAGAAGGTAGTTGAAGGAACAGATTTCTTGTTTTCTATCTCAACCGTAACTAACCACGTAAACATAGCTACCACTAAACTAGCAATTGGACACTAAGCTAAATGTTAAAACCATTAAGATCAGACAGTTACAAGAAACACATCTCCTTGTTCAGCTACGTTTTAATTTACCAAAAGAAACCAAAAGGAAGAAAAAACCAGAAATAA
*********************************************************************************************************************......(((((.((((........)))).))))).....................****************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total M053
female body
 SRR553486
Makindu_3 day-old ovaries
 M023
head
 M024
male body		 SRR553485
Chicharo_3 day-old ovaries
 M025
embryo
 SRR902008
ovaries
 SRR618934
dsim w501 ovaries
 O002
Head
 SRR553487
NRT_0-2 hours eggs
 GSM343915
embryo
 SRR553488
RT_0-2 hours eggs
 SRR902009
testis
 O001
Testis
..................................................................................................................................................TGTTAAAACCATTAAGATCAGACAGT.............................................................................. 26 0 1 8.00 8 0 3 0 0 4 0 0 0 0 0 0 1 0 0
..........................................AATAGAAGGTAGTTGAAGGAAC.......................................................................................................................................................................................... 22 0 1 5.00 5 0 0 0 1 0 4 0 0 0 0 0 0 0 0
.....................................................................................................................CTAAACTAGCAATTGGACACT................................................................................................................ 21 0 1 2.00 2 0 0 2 0 0 0 0 0 0 0 0 0 0 0
..................................................................................CTCAACCGTAACTAACCACGTAAACAT............................................................................................................................................. 27 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................TTAAGATCAGACAGTTACAAGAAACACA................................................................. 28 0 1 2.00 2 0 0 0 0 1 0 0 0 0 1 0 0 0 0
.............................................................................................................................................................TTAAGATCAGACAGTTACAAG........................................................................ 21 0 1 2.00 2 0 0 0 2 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................AAAACCATTAAGATCAGACAGTTACAAGA....................................................................... 29 0 1 2.00 2 0 1 0 0 0 0 0 0 0 1 0 0 0 0
...............................................AAGGTAGTTGAAGGAACAGA....................................................................................................................................................................................... 20 0 1 2.00 2 0 0 0 0 0 2 0 0 0 0 0 0 0 0
.................................................................................................................................TTGGACACTAAGCTAAATGTT.................................................................................................... 21 0 1 2.00 2 0 0 2 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................AACTAGCAATTGGACACTAAGCTAAAT....................................................................................................... 27 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................TTGTTTTCTATCTCAACCGTA.............................................................................................................................................................. 21 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1
.....................................................................................................................................................................AGACAGTTACAAGAAACACATCTCCTT.......................................................... 27 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................AAGGTAGTTGAAGGAACAGAT...................................................................................................................................................................................... 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................TTCAGCTACGTTTTAATTTACCAAAAGA............................. 28 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................................................AACCAAAAGGAAGAAAAAACC........ 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................TTAAGATCAGACAGTTACAAGA....................................................................... 22 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0
........GCCGCTTCTGTAAAAGCTACTTTA.......................................................................................................................................................................................................................... 24 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
................................................AGGTAGTTGAAGGAACAGATTTCT.................................................................................................................................................................................. 24 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0
.......................................................................................................................................................AAACCATTAAGATCAGACAGT.............................................................................. 21 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................GAAACACATCTCCTTGTTCAGCTACGTT............................................. 28 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................................ATTGGACACTAAGCTAAATGT..................................................................................................... 21 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0
...............................................AAGGTAGTTGAAGGAACA......................................................................................................................................................................................... 18 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................GTTTTAATTTACCAAAAG.............................. 18 0 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0
............................................................................................................................................................ATTAAGATCAGACAGTTAC........................................................................... 19 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................ACCATTAAGATCAGACAGTTACAAGA....................................................................... 26 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0
................................GTGACTAACTAATAGAAGGT...................................................................................................................................................................................................... 20 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................TCTCCTTGTTCAGCTACG............................................... 18 0 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0
.........................................TAATAGAAGGTAGTTGAAGGAACAGAT...................................................................................................................................................................................... 27 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0
..................................................................................................................................................................ATCGGACAGTTACAAGAAACA................................................................... 21 1 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0
................................................AGGTAGTTGAAGGAACAGA....................................................................................................................................................................................... 19 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0
......CAGCCGCTTCTGTAAAAGCT................................................................................................................................................................................................................................ 20 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................AAACCATTAAGATCAGACAGTTACAAGA....................................................................... 28 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................AAAACCATTAAGATCAGAC................................................................................. 19 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0
...................AAAAGCTACTTTAGTGACT.................................................................................................................................................................................................................... 19 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................TAAAACCATTAAGATCAGACAGTTAC........................................................................... 26 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
....................................................AGTTGAAGGAACAGATTTCTTGG............................................................................................................................................................................... 23 1 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................................AATTTACCAAAAGAAACCA........................ 19 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................AGTGACTAACTAATAGAAGGT...................................................................................................................................................................................................... 21 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................AATTGGACACTAAGCTAAAT....................................................................................................... 20 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0
...................................................................................................................................................GTTAAAACCATTAAGATCAGAC................................................................................. 22 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................GGGATCAGACAGTTACAAGAA...................................................................... 21 2 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
.................GTAAAAGCTACTTTAGTGACTAACT................................................................................................................................................................................................................ 25 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................TTACAAGAAACACATCTCCTTGTT....................................................... 24 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0
................................................................................ATCTCAACCGTAACTAACCACGTA.................................................................................................................................................. 24 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0
.............................................AGAAGGTAGTTGAAGGAA........................................................................................................................................................................................... 18 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................TAAAACCATTAAGATCAGACAGTTACAAGA....................................................................... 30 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0
............................................................................................................................................................ATTAAGATCAGACAGTTACAAGAAACAC.................................................................. 28 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0
...........................................................................................AACTAACCACGTAAACATAGCTA........................................................................................................................................ 23 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................TAAACATAGCTACCACTAAACT.............................................................................................................................. 22 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................GTTTTCTATCTCAACCGTAAC............................................................................................................................................................ 21 0 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0
.......................................ACTAATAGAAGGTAGTTGAAGGAACA......................................................................................................................................................................................... 26 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................TTAAAACCATTAAGATCAGACAGTTAC........................................................................... 27 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0
........................................................................................................................AACTAGCAATTGGACACTAAGCTAAA........................................................................................................ 26 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................................AGAAACCAAAAGGAAGAAAAAACC........ 24 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0
...........................................ATAGAAGGTAGTTGAAGGAAC.......................................................................................................................................................................................... 21 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0
...............CTGTAAAAGCTACTTTAGTGACT.................................................................................................................................................................................................................... 23 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................................TACCAAAAGAAACCAAAAGGAAGAAAAAA.......... 29 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0
.............................................................................................................................GCAATTGGACACTAAGCT........................................................................................................... 18 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................................ATCTCCTTGTTCAGCTACGT.............................................. 20 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................AACTAGCAATTGGACACTAAG............................................................................................................. 21 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................................ATCTCCTTGTTCAGCTAC................................................ 18 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................TAAACTAGCAATTGGACACT................................................................................................................ 20 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................TAACCACGTAAACATAGCT......................................................................................................................................... 19 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................TAAGATCAGACAGTTACAAGAAACAC.................................................................. 26 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0
.........................................................................................................................................................ACCATTAAGATCAGACAGTTACAAG........................................................................ 25 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................................................AAAAGAAACCAACAGG................... 16 1 11 0.91 10 0 2 0 0 0 0 0 0 0 3 0 5 0 0
.......................................................................................................................................................................................................................AAAAGAAACCAACAGGGA................. 18 2 20 0.45 9 0 3 0 0 0 0 0 0 0 4 0 2 0 0
........................................................................................................................................................................................................................AAAGAAACCAACAGG................... 15 1 20 0.15 3 0 2 0 0 0 0 0 0 0 1 0 0 0 0
............................................GAGAAGGGTGTTGAAGGAAC.......................................................................................................................................................................................... 20 3 9 0.11 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................CTCGTTGTTCAGCTA................................................. 15 1 11 0.09 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0
.............................................AGAACGGCGTTGAAGGAAC.......................................................................................................................................................................................... 19 3 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0
............................................................GAACAGTTTTCTTGT............................................................................................................................................................................... 15 1 20 0.05 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0

Anti-sense strand reads

ATCCGCGTCGGCGAAGACATTTTCGATGAAATCACTGATTGATTATCTTCCATCAACTTCCTTGTCTAAAGAACAAAAGATAGAGTTGGCATTGATTGGTGCATTTGTATCGATGGTGATTTGATCGTTAACCTGTGATTCGATTTACAATTTTGGTAATTCTAGTCTGTCAATGTTCTTTGTGTAGAGGAACAAGTCGATGCAAAATTAAATGGTTTTCTTTGGTTTTCCTTCTTTTTTGGTCTTTATT
******************************************************************************......(((((.((((........)))).))))).....................********************************************************************************************************************* 		Read size # Mismatch Hit Count Total Norm Total M023
head
 SRR553485
Chicharo_3 day-old ovaries
 O002
Head
 SRR618934
dsim w501 ovaries
 SRR553486
Makindu_3 day-old ovaries
 O001
Testis
 M025
embryo
 SRR553487
NRT_0-2 hours eggs
 M024
male body		 SRR553488
RT_0-2 hours eggs
 SRR902009
testis
.........................................................................................................................................................TGGTAATTCTAGTCTGTCAAT............................................................................ 21 0 1 6.00 6 3 1 0 0 2 0 0 0 0 0 0
.TCCGCGTCGGCGAAGACATTT.................................................................................................................................................................................................................................... 21 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................GTAGAGGAACAAGTCGATGCAA............................................. 22 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0
..CCGCGTCGGCGAAGACGTTTT................................................................................................................................................................................................................................... 21 1 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0
.................................................CCATCAACTTCCTTGTCTAAAG................................................................................................................................................................................... 22 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0
...................................................................................................................................................................................CTGTGTAGAGGAACAAGTCGA.................................................. 21 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
....................................GATTGATTATCTTCCATC.................................................................................................................................................................................................... 18 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0
......................................................................................................................................................................CTGTCAATGTTCTTTGTGTAGA.............................................................. 22 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0
.........................................................................................................................................................................................AGAGGAACAAGTCGATGCAAA............................................ 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
...........................................................................AAAGATAGAGTTGGCATTGA........................................................................................................................................................... 20 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................................GGAACAAGTCGATGCAAAATT......................................... 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
..........................................................................................................................GATCGTTAACCTGTGATTCGA........................................................................................................... 21 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0
................................................TCCATCAACTTCCTTGTCTAA..................................................................................................................................................................................... 21 0 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0
............................................................................AAGATAGAGTTGGCATTGATT......................................................................................................................................................... 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................TTTGGTAATTCTAGTCTGTCA.............................................................................. 21 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0
................................................................................................................ATGGTGATTTGATGGTTAC....................................................................................................................... 19 2 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0
................................CACTGATTGATTATCTTCCATC.................................................................................................................................................................................................... 22 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0
...........................................................CCTTGTCTAAAGAACAAAAGATAGAG..................................................................................................................................................................... 26 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0
....................................................................................................................................................................................TGTGTAGAGGAACAAGTCGAT................................................. 21 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0
...................................TGATTGATTATCTTCCATC.................................................................................................................................................................................................... 19 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0
........................................................................................................................................................TTGGTAATTCTAGTCTGTCAA............................................................................. 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
.........GGCGAAGACATTTTCGATGAA............................................................................................................................................................................................................................ 21 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0
..............................ATCACTGATTGGTTATCTTCC....................................................................................................................................................................................................... 21 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................CTTTGTGTAGAGGAACAAGTC.................................................... 21 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................AGAGTAACAAGTCTATGC............................................... 18 2 6 0.67 4 0 0 0 0 0 0 4 0 0 0 0
..............................................................................................................AGATGGTGATTTGAT............................................................................................................................. 15 1 5 0.40 2 0 1 0 0 1 0 0 0 0 0 0
................................................................................................................ATGGTGATGTGATCG........................................................................................................................... 15 1 6 0.33 2 0 0 0 0 0 0 0 2 0 0 0
.................................................................CTAAAGAAAAAAAGCTAGAGTA................................................................................................................................................................... 22 3 4 0.25 1 0 0 0 0 0 0 0 0 1 0 0
.ACCGCGTCGGCGAAGACT....................................................................................................................................................................................................................................... 18 2 12 0.08 1 0 0 0 1 0 0 0 0 0 0 0
................................................................................................................ATGGTGATTTGTTGGTTA........................................................................................................................ 18 2 15 0.07 1 0 0 0 0 0 0 0 1 0 0 0
................................................................................................................ATGGTGATTTGGTGGTTA........................................................................................................................ 18 2 19 0.05 1 0 0 0 0 0 0 0 0 0 1 0
..................................................................................................................GGTGAATTGATCCTTAA....................................................................................................................... 17 2 20 0.05 1 0 0 0 0 1 0 0 0 0 0 0
...........................................................................AAGGAAAGAGTTGGCATTA............................................................................................................................................................ 19 3 20 0.05 1 0 0 0 0 0 0 0 0 0 0 1
................................................................................................................ATGGTGATTTGATGGTTACG...................................................................................................................... 20 3 20 0.05 1 0 0 0 0 0 0 0 0 0 1 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim2 2r:3448662-3448911 + dsi_13131 TAGGCGCAG--------------CCGCTTCTGTAAAAGCTACTTT--AGTGACTA--ACTAATAGAAGGTAGTTG--AAGGAACAGATTTCTTGTT--------T-TCTATC-TC------------AACCGTA-ACTAACCAC--GTAAACATAGC--------------T--ACCACTAAACTAGCAA------TTGG---ACACTAAGCTAAATGTTAAAACCATTAAGAT--CAGACAGTTACAAGAAA-CACATCTCC-----------TT--GTTCAGCTACGTTTTAATTTACC---------AAAAGAAACCAAAAGGAAGAA----------------------------------------------------AAA-------------------------------------------ACCAG------AAATAA
droSec2 scaffold_1:250593-250835 + TAGGCGCAG--------------CCGCTTCTGTAAAAGCTACTTT--AGTGACTA--ACTAATAGAAGGTGGTTG--AAGGAACAGATTTCTTATT--------T-TCTATC-TA------------AACCGTA-ACTAACCAC--GTAAACATAGC--------------T--ACCACTAAACTAGCAA------TTGG---ACACTAAGCTAAATGTTAAAACCA------T--CAGACAGTTACAAGAAA-CACATCTCC-----------TT--GTTCAGCTACGTTTTAATTTACC---------AAAAGAAACCAAAAGGAAG-A----------------------------------------------------GAA-------------------------------------------ACCAG------AAATAA
dm3 chr2R:2586085-2586334 + TAGGCGCAG--------------CCGCTTCTGTAAAAGCTACTTT--AGTGACTA--ACTAATAGAAGGTAGTTG--AAGGAACAGATTTCTTGTT--------T-TCTATC-TC------------AACCGTA-ACTAACCAC--GTAAACATAGC--------------T--ACCACTAATCTAGCAA------TTGG---ACACTAAGCTAAATGTTAAAACCATTAAGAT--CAGACAGTTACAAGAAA-CACATCTCC-----------TT--GTTCAGCTACGTTTTATTTTACC---------AAAAAAAACCAAAAGGAAGAA----------------------------------------------------GTA-------------------------------------------ACCAG------AAATAA
droEre2 scaffold_4929:19959153-19959402 - TAGGCGCAG--------------CCGCTTCTGTAAAAGCTATTTT--AGTGACTA--ACTAATAGAAGGTAGTTA--AAGGAACCGATTTCTTGTT--------T-TCTATC-TC------------AACCGTA-ACTAACCAC--GTAAACATAGC--------------T--ACCACTAAACTAGCAA------TTGA---ACACTAAGCTAAATGTTATAACCATTAAGAT--CAGACAGTTGCAAGAAA-CACATCTCC-----------TT--GTTCAGCTACATTTTAATTACCC---------AAAGGAAACCAAAACGAAGAA----------------------------------------------------GAA-------------------------------------------ACCAG------AAATAA
droYak3 2L:15329444-15329692 + T-GGCGTAG--------------CCGCTTCTGTAAAAGCTACTTT--AGTGACTA--ACTA-TAGAAGATAGTGA--AAGGAACAGATTTATTGTT--------TTTTTATC-TC------------AACCGTA-ACTAATCCC--GTAAACATAGC--------------T--ACCACTAAACTAGCAA------TTGA---ACACTAAGCTAAATGTTATAACCATTAAGAA--GAGACAGTTGCAAGAAA-CACATCTCC-----------TT--GTTCAGCTACGTTTTAATTACCG---------AAAAGAATCCAAAAGGAAGAA----------------------------------------------------GAA-------------------------------------------AACAG------AAATAA
droEug1 scf7180000409462:3457078-3457325 + TAGACGTAG--------------CCGCTTCTGTAAAAGCTACTTT--AGTGACTA--ACTAATAGAAGGTAGTTG--AAGGGACATATTTCTTGTT--------T-TCTATC-TC------------AACCGTA-ACTAACCAC--GTAAACATAGC--------------T--ACCACTTAACTAGCAT------TCAA---ACACTAAGCGTAATGTTAAA-CCATAAAGAT--CAGGCAACTACAAGAAATCACATCTCC-----------TT--GTTCAGCTACGTTTTAATTTACC---------AAAAGAAACCAAAAGGAA--A----------------------------------------------------GAA-------------------------------------------ATCCG------AAATAA
droBia1 scf7180000302292:3565809-3566055 - TAGACGTAG--------------CCGCTTCTGTAAAAGCTACTTT--AGTGACTA--ACTAATAGAAGGTAGTTG--GAGGGACATATTTCTTGTT--------T-TCTATC-TC------------AACCGTA-ACTAACCAC--GTAATAATAGC--------------T--ACCACTAAACTAGCAT------TCGA---ACACTAAGCGTAATGTTAAAACCATAAAGAT--CAGACAACTACGAGAAAAGCCCTCTTC-----------TT--GTTCAGCTACGTTTTAATTTACC---------AAA--AAACCGAAAGGAA--A----------------------------------------------------GAA-------------------------------------------ACCAG------AAATAA
droTak1 scf7180000413887:15859-16106 - TAGACGTAG--------------CCGCTTCTGTAAAAGCTACTTT--AGTGACTA--ACTAATAGAAGGTAGTTG--GAGGGACATAT-TCTTGTT--------T-TCTATC-TC------------AACCGTA-ACTAACCAC--GTAATAATAGC--------------T--ACCACTAAACTAGCAA------TCGA---ACACTAAGCATAATGTTAAAACCATAAAGAT--CAGACAATTACAAGAAAACACATCTCC-----------TT--GTTCAGCTACGTTTTAATTTGCC---------AAAAGAAACCAAAAGGAA--A----------------------------------------------------GAA-------------------------------------------ACCAG------AAATAA
droEle1 scf7180000491217:427130-427376 - TAGACGTAG--------------CCGCTTCTGTAAAAGCTACTTT--AGTGACTA--ACTAATAGAAGGTAGTTG--GAGGGACATATTTCTTGTT--------T-TCTATC-TC------------AACCGTA-ACTAACCAC--GTAAACATAGC--------------T--ACCACTAAACTAGCAA------TTGA---ACACTAAGCGTAATGTTAAAATCGTAAAGAT--CAGACAGCTACAAGACA-CACCTCTCC-----------TT--GTTCAGCTACGTTTTAATTAACC---------AAAAGAAACCAAAAGAAA-------------------------------------------------------AAA-------------------------------------------AACAG------AAATAA
droRho1 scf7180000766409:473515-473763 + TAGACGTAG--------------CCGCTTCTGTAAAAGCTACTTT--AGTGACTAAAACTAATAGAAGGTAGTTG--GAGGGACATATTTCTTGTT--------T-TCTATC-TC------------AACAGTA-ACTAACCAC--GTAAACATAGC--------------T--ACCACTAAACTAGCAA------TCGA---ACACTAAGCGTAATGTTAAAATCATAAAGAT--CAGACAGCTACAAGAAAACACAACTCC-----------TT--GTTCAGCTACGTTTTAATTTACC---------AAAAGAAACCAAAAGAA--------------------------------------------------------AAA-------------------------------------------ACCAG------AAATAA
droFic1 scf7180000453955:715242-715488 - GAGACGTAG--------------CCGCTTCTGTAAAAGCTACTTT--AGTGACTA--ACTAGTAGAAGGTAGTTT--GAGGGACATATTTCTTGTT--------T-TCAATC-TC------------AACCGTA-ACTAACCAC--GTAATCATAGC--------------T--ACCACTAAACTAGCAA------TCAA---ACACTAAGCGTAATGTTAAA-CCATAAAGAT--CAGACAACTACAAGAGAACAAAACTCC-----------TT--GTTCAGCTACGTTTTAATTTACC---------AAAAGAAACCAAACGGAA-------------------------------------------------------GAA-------------------------------------------ATCAG------AAATAA
droKik1 scf7180000302470:148762-148991 + TAGACGTAG--------------CCGCTTCTGTAAAAGCTCCTTTATAGTGACTA--ACTAATAGAAGGT-------GACCGACCGATTTCTCGTTTTTG-AT-T-TCGATT-TC------------AACAATA-ACTAATCAC--GTAAACATAGCAACT----------T--ACCAGTAAACTAGCAA------GCGA---ACACTAAGCGTAATGTTAAATCCATAAAGAA--CCGGCGGC-------------AACTGCAACA-----AACT--GT------------------ATT-----------CAGAAACTGAAGCGAT--C----------------------------------------------------GAA----------------C--------------------------CCGAG------AAATAA
droAna3 scaffold_13266:18423152-18423403 - TTAACGTAG--------------CCGCTTCTGTAAAAGCTACTTT--AGTGACTA--ACTAGTAGACGGTAGTGG--GAGAGACGGATTTCTTGTT--------T-TCTATT-TC------------AACAGTA-ACTAACCAC--GTAAACATAGC--------------A--ACCACTAAACTAGCAA------ACGA---ACACTAAGCGTAATGTTAAACTCATTAAGAT--CAGACAACTATAG-------CATCTCCAACACTC-AAATT--GTTCAGCTACGTTTTTATTAATC---------GAAAGAAACCGAAAGGAA--T----------------------------------------------------GAG-------------------------------------------AACAG------AAATAA
droBip1 scf7180000396735:1695288-1695540 - TTAACGTAG--------------CCGCTTCTGTAAAAGCTACTTT--AGTGACTA--ACTACTAGACGGTAGTGG--GAGAGACGGATTTCTTGAT--------T-TCTATT-TC------------AACAGTA-ACTAACCAC--GTAAACATAGC--------------A--ACCACTAAACTAGCAA------ACGA---ACACTAAGCGTAATGTTAAACTCATTAAGAT--CAGACAACTACAG-------CATCTCCAACACAAAAAATT--GTTCAGCTACGTTTTTATTAACT---------AAAAGAACCCGAGAGGAT--T----------------------------------------------------GAG-------------------------------------------AACAG------AAATAA
dp5 3:850254-850497 + TAGACGTAGC-------------CCGCTTCTGTAAAAGCTACTCT--AGTGACTA--ACTAATAGAAGGTACTAGCTGAGACACAGATATCTTGTT--------T-TCTAACTTC------------AAAAGCAAACTAACCACAGGCAA----------------------------ATCAAATAGCAA------ACAAAACACACTAAGCGTAATGTTAAAATCACTCA-ATCCCACACAACTAC---------------------------TACACTTGAGCTACGTTTTAATTAAAGAACAAACAG----------------------AT---------------------GCAAAATACCA-------A---ACGAGAGAA-------------------------------------------TCGAA------AAATAA
droPer2 scaffold_2:1026192-1026435 + TAGACGTAGC-------------CCGCTTCTGTAAAAGCTACTCT--AGTGACTA--ACTAATAGAAGGTACTAGCTGAGACACAGATATCTTGTT--------T-TCTAACTTC------------AAAAGCAAACTAACCACAGGCAA----------------------------ATCAAATAGCAA------ACAAAACACACTAAGCGTAATGTTAAAATCACTCA-ATCCCACACAACTAC---------------------------TACACTTGAGCTACGTTTTAATTAAAGAACAAACAG----------------------AT---------------------GCAAAATACCA-------A---ACGAGAGAA-------------------------------------------TCGAA------AAATAA
droVir3 scaffold_12875:15472821-15473108 + TAGCCGTAGCCCGTAGCCGATAGTCGCTTCTGTAAAAGCTAC--T--AGTGACTA--ACTCCTAGAAGGTAGTGG--AAG---CAGATTAATTGTTTTCATTTTT-TTTATT-TCAAGCAAAATATTAACCGTA-ATAAA-----------TTTAGCTGCAA--AAATAGTA--AACCGCAAATTAGTGAACCATTTTCA---ACACTAAGCGTAATGTTTTAA-----AAG--------------------------------------------------------------------------------AAGAAACCCAAAATAA------------ACTAACCGCTAAAAAGAAAAATAATAATAATAAAACAATAGCAAAAATAAGAAGGCATTAAATTCA-----------------------ATTTT------AAATAA
droMoj3 scaffold_6496:8325066-8325320 - CCGACA---------GCTGATAGCCGCTTCTGTAAAAGCTAC--T--AGTGACTA--ACTCTTAGAAGGTAGTGG--ATG---CAGACCTATTGTTTTCATTTTT-TTTTAT-TCAAGTAAAGGAATAACCGTA-A------AA--ATAAACTTAGCTGCAAAGAAATAGTTAAACCGCAAAACTAGTGAAACGATATCG---ACACTAAGCGTAATGTTAAAA-----------------------------------------------------------------------------------------AAAAACCAGAACGAAC-AGAAAACTAAAATAATCGCTGAA--------AATGA-------A---ATAGTAAAA-------------------------------------------ACATA------AAATAA
droGri2 scaffold_15245:12274882-12275162 + TAGCCGTAGCCGATAGCCGATAGCCGCTTCTGTAAAAGCTAC--T--AGTGACTA--ACTCTTAGAAGGTAGTGG--TAG---CAGATTTATTGTTTCCATAT-T-TTTATT-TCCAGCAGAATAATAACCGTA-A-----------TAAACTTAGCGGCGA--TACTAGTA-AACCAC--AATTACTGAACACATTTCA---GCACTAAGCATAATGTTAACA--------AA--CAAACAAG--CATGAAAACA-AACTTT-----------AT--GTTC-GCTGAG----------------------------------AAAGT--C----------------------------------------------------AAA----------------TCCAATAGAAAAATTAAAAAAAAAAAAAATAAAAAAAACTTTAA

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
TAGGCGCAG--------------CCGCTTCTGTAAAAGCTACTTT--AGTGACTA--ACTAATAGAAGGTAGTTG--AAGGAACAGATTTCTTGTT--------T-TCTATC-TC------------AACCGTA-ACTAACCAC--GTAAACATAGC--------------T--ACCACTAAACTAGCAA------TTGG---ACACTAAGCTAAATGTTAAAACCATTAAGAT--CAGACAGTTACAAGAAA-CACATCTCC-----------TT--GTTCAGCTACGTTTTAATTTACC---------AAAAGAAACCAAAAGGAAGAA----------------------------------------------------AAA-------------------------------------------ACCAG------AAATAASizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
........................................................................................................................................................................................................................TGTTAAAACCATTAAGAT--CAGACAGT..........................................................................................................................................................................................................2618.00800000043010000000
............................................................AATAGAAGGTAGTTG--AAGGAAC..........................................................................................................................................................................................................................................................................................................................................................................2215.00501400000000000000
..................................................................................................................................................................................CTAAACTAGCAA------TTGG---ACACT..............................................................................................................................................................................................................................................2112.00220000000000000000
...............................................................................................................C-TC------------AACCGTA-ACTAACCAC--GTAAACAT....................................................................................................................................................................................................................................................................................................2712.00200020000000000000
...................................................................................................................................................................................................................................TTAAGAT--CAGACAGTTACAAGAAA-CACA............................................................................................................................................................................................2812.00200000010100000000
...................................................................................................................................................................................................................................TTAAGAT--CAGACAGTTACAAG....................................................................................................................................................................................................2112.00202000000000000000
............................................................................................................................................................................................................................AAAACCATTAAGAT--CAGACAGTTACAAGA...................................................................................................................................................................................................2912.00200000001100000000
.................................................................AAGGTAGTTG--AAGGAACAGA.......................................................................................................................................................................................................................................................................................................................................................................2012.00200200000000000000
....................................................................................................................................................................................................TTGG---ACACTAAGCTAAATGTT..................................................................................................................................................................................................................................2112.00220000000000000000
.....................................................................................................................................................................................AACTAGCAA------TTGG---ACACTAAGCTAAAT.....................................................................................................................................................................................................................................2711.00100010000000000000
...........................................................................................TTGTT--------T-TCTATC-TC------------AACCGTA-.......................................................................................................................................................................................................................................................................................................................2111.00100001000000000000
.............................................................................................................................................................................................................................................AGACAGTTACAAGAAA-CACATCTCC-----------TT--........................................................................................................................................................................2711.00100010000000000000
.................................................................AAGGTAGTTG--AAGGAACAGAT......................................................................................................................................................................................................................................................................................................................................................................2111.00100000001000000000
.......................................................................................................................................................................................................................................................................................TTCAGCTACGTTTTAATTTACC---------AAAAGA..................................................................................................................................2811.00100000001000000000
............................................................................................................................................................................................................................................................................................................................AACCAAAAGGAAGAA----------------------------------------------------AAA-------------------------------------------ACC..............2111.00100010000000000000
...................................................................................................................................................................................................................................TTAAGAT--CAGACAGTTACAAGA...................................................................................................................................................................................................2211.00101000000000000000
........G--------------CCGCTTCTGTAAAAGCTACTTT--A..............................................................................................................................................................................................................................................................................................................................................................................................................2411.00100000001000000000
..................................................................AGGTAGTTG--AAGGAACAGATTTCT..................................................................................................................................................................................................................................................................................................................................................................2411.00100000000000001000
.............................................................................................................................................................................................................................AAACCATTAAGAT--CAGACAGT..........................................................................................................................................................................................................2111.00101000000000000000
.........................................................................................................................................................................................................................................................GAAA-CACATCTCC-----------TT--GTTCAGCTACGTT...........................................................................................................................................................2811.00100010000000000000
.............................................................................................................................................................................................A------TTGG---ACACTAAGCTAAATGT...................................................................................................................................................................................................................................2111.00100000000001000000
.................................................................AAGGTAGTTG--AAGGAACA.........................................................................................................................................................................................................................................................................................................................................................................1811.00110000000000000000
................................................................................................................................................................................................................................................................................................GTTTTAATTTACC---------AAAAG...................................................................................................................................1811.00100000100000000000
..................................................................................................................................................................................................................................ATTAAGAT--CAGACAGTTAC.......................................................................................................................................................................................................1911.00100010000000000000
...............................................................................................................................................................................................................................ACCATTAAGAT--CAGACAGTTACAAGA...................................................................................................................................................................................................2611.00100000000001000000
................................................GTGACTA--ACTAATAGAAGGT........................................................................................................................................................................................................................................................................................................................................................................................2011.00100010000000000000
..................................................................................................................................................................................................................................................................TCTCC-----------TT--GTTCAGCTACG.............................................................................................................................................................1811.00100000100000000000
...........................................................TAATAGAAGGTAGTTG--AAGGAACAGAT......................................................................................................................................................................................................................................................................................................................................................................2711.00100000000000010000
..................................................................AGGTAGTTG--AAGGAACAGA.......................................................................................................................................................................................................................................................................................................................................................................1911.00110000000000000000
......CAG--------------CCGCTTCTGTAAAAGCT......................................................................................................................................................................................................................................................................................................................................................................................................................2011.00101000000000000000
.............................................................................................................................................................................................................................AAACCATTAAGAT--CAGACAGTTACAAGA...................................................................................................................................................................................................2811.00100000001000000000
............................................................................................................................................................................................................................AAAACCATTAAGAT--CAGAC.............................................................................................................................................................................................................1911.00110000000000000000
.................................AAAAGCTACTTT--AGTGACT........................................................................................................................................................................................................................................................................................................................................................................................................1911.00100010000000000000
...........................................................................................................................................................................................................................TAAAACCATTAAGAT--CAGACAGTTAC.......................................................................................................................................................................................................2611.00100000001000000000
......................................................................AGTTG--AAGGAACAGATTTCTTGG...............................................................................................................................................................................................................................................................................................................................................................2311.00101000000000000000
.....................................................................................................................................................................................................................................................................................................AATTTACC---------AAAAGAAACCA.............................................................................................................................1911.00100010000000000000
...............................................AGTGACTA--ACTAATAGAAGGT........................................................................................................................................................................................................................................................................................................................................................................................2111.00101000000000000000
............................................................................................................................................................................................AA------TTGG---ACACTAAGCTAAAT.....................................................................................................................................................................................................................................2011.00100000000000100000
.........................................................................................................................................................................................................................GTTAAAACCATTAAGAT--CAGAC.............................................................................................................................................................................................................2211.00101000000000000000
...............................GTAAAAGCTACTTT--AGTGACTA--ACT..................................................................................................................................................................................................................................................................................................................................................................................................2511.00100010000000000000
...................................................................................................................................................................................................................................................TTACAAGAAA-CACATCTCC-----------TT--GTT.....................................................................................................................................................................2411.00100000000000010000
.............................................................................................................ATC-TC------------AACCGTA-ACTAACCAC--GTA.........................................................................................................................................................................................................................................................................................................2411.00100000000000100000
...............................................................AGAAGGTAGTTG--AAGGAA...........................................................................................................................................................................................................................................................................................................................................................................1811.00100000010000000000
...........................................................................................................................................................................................................................TAAAACCATTAAGAT--CAGACAGTTACAAGA...................................................................................................................................................................................................3011.00100000010000000000
..................................................................................................................................................................................................................................ATTAAGAT--CAGACAGTTACAAGAAA-CAC.............................................................................................................................................................................................2811.00100000000000010000
.....................................................................................................................................A-ACTAACCAC--GTAAACATAGC--------------T--A...............................................................................................................................................................................................................................................................................2311.00100010000000000000
...................................................................................................................................................TAAACATAGC--------------T--ACCACTAAACT.....................................................................................................................................................................................................................................................................2211.00100010000000000000
.............................................................................................GTT--------T-TCTATC-TC------------AACCGTA-AC.....................................................................................................................................................................................................................................................................................................................2111.00100000100000000000
.........................................................ACTAATAGAAGGTAGTTG--AAGGAACA.........................................................................................................................................................................................................................................................................................................................................................................2611.00100010000000000000
..........................................................................................................................................................................................................................TTAAAACCATTAAGAT--CAGACAGTTAC.......................................................................................................................................................................................................2711.00100000010000000000
.....................................................................................................................................................................................AACTAGCAA------TTGG---ACACTAAGCTAAA......................................................................................................................................................................................................................................2611.00100000001000000000
.........................................................................................................................................................................................................................................................................................................................AGAAACCAAAAGGAAGAA----------------------------------------------------AAA-------------------------------------------ACC..............2411.00100000000001000000
.............................................................ATAGAAGGTAGTTG--AAGGAAC..........................................................................................................................................................................................................................................................................................................................................................................2111.00110000000000000000
.............................CTGTAAAAGCTACTTT--AGTGACT........................................................................................................................................................................................................................................................................................................................................................................................................2311.00100010000000000000
.........................................................................................................................................................................................................................................................................................................TACC---------AAAAGAAACCAAAAGGAAGAA----------------------------------------------------AAA-------------------------------------------A................2911.00100000010000000000
..........................................................................................................................................................................................GCAA------TTGG---ACACTAAGCT.........................................................................................................................................................................................................................................1811.00101000000000000000
.................................................................................................................................................................................................................................................................ATCTCC-----------TT--GTTCAGCTACGT............................................................................................................................................................2011.00100010000000000000
.....................................................................................................................................................................................AACTAGCAA------TTGG---ACACTAAG...........................................................................................................................................................................................................................................2111.00110000000000000000
.................................................................................................................................................................................................................................................................ATCTCC-----------TT--GTTCAGCTAC..............................................................................................................................................................1811.00100010000000000000
...................................................................................................................................................................................TAAACTAGCAA------TTGG---ACACT..............................................................................................................................................................................................................................................2011.00110000000000000000
.........................................................................................................................................TAACCAC--GTAAACATAGC--------------T--................................................................................................................................................................................................................................................................................1911.00100010000000000000
....................................................................................................................................................................................................................................TAAGAT--CAGACAGTTACAAGAAA-CAC.............................................................................................................................................................................................2611.00100000000000010000
...............................................................................................................................................................................................................................ACCATTAAGAT--CAGACAGTTACAAG....................................................................................................................................................................................................2511.00100100000000000000
droSec2
TAGGCGCAG--------------CCGCTTCTGTAAAAGCTACTTT--AGTGACTA--ACTAATAGAAGGTGGTTG--AAGGAACAGATTTCTTATT--------T-TCTATC-TA------------AACCGTA-ACTAACCAC--GTAAACATAGC--------------T--ACCACTAAACTAGCAA------TTGG---ACACTAAGCTAAATGTTAAAACCA------T--CAGACAGTTACAAGAAA-CACATCTCC-----------TT--GTTCAGCTACGTTTTAATTTACC---------AAAAGAAACCAAAAGGAAG-A----------------------------------------------------GAA-------------------------------------------ACCAG------AAATAASizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
............................................................AATAGAAGGTGGTTG--AAGGAACA.........................................................................................................................................................................................................................................................................................................................................................................2314.0040310
............................................................AATAGAAGGTGGTTG--AAGGAACAGA.......................................................................................................................................................................................................................................................................................................................................................................2514.0040310
.............................................................ATAGAAGGTGGTTG--AAGGAACA.........................................................................................................................................................................................................................................................................................................................................................................2213.0030210
............................................................AATAGAAGGTGGTTG--AAG..............................................................................................................................................................................................................................................................................................................................................................................1812.0020020
............................................................................................................................................................................................................................................................................................................................AACCAAAAGGAAG-A----------------------------------------------------GAA-------------------------------------------ACCAG------A.....2312.0020200
..................................................GACTA--ACTAATAGAAGGT........................................................................................................................................................................................................................................................................................................................................................................................1812.0021001
.............................................................ATAGAAGGTGGTTG--AAGGAACAGA.......................................................................................................................................................................................................................................................................................................................................................................2412.0020200
.................................................................AAGGTGGTTG--AAGGAACAGA.......................................................................................................................................................................................................................................................................................................................................................................2011.0010100
...............................................AGTGACTA--ACTAATAGAAGGTGGT.....................................................................................................................................................................................................................................................................................................................................................................................2411.0010100
...............................................................AGAAGGTGGTTG--AAGGAACA.........................................................................................................................................................................................................................................................................................................................................................................2011.0010100
...................................................................GGTGGTTG--AAGGAACAGATT.....................................................................................................................................................................................................................................................................................................................................................................2011.0010010
........................................................................................................................................................................................................................................................................................................TTACC---------AAAAGAAACCAAAAGGAAG-A----------------------------------------------------...............................................................2511.0010010
..........................................................................................................................................................................................GCAA------TTGG---ACACTAAGCTAAATG....................................................................................................................................................................................................................................2311.0010100
..................................................GACTA--ACTAATAGAAGGTGGT.....................................................................................................................................................................................................................................................................................................................................................................................2111.0010100
......................................................A--ACTAATAGAAGGTGGTTG--AAGGAA...........................................................................................................................................................................................................................................................................................................................................................................2511.0010100
............................................................AATAGAAGGTGGTTG--AAGGAAC..........................................................................................................................................................................................................................................................................................................................................................................2211.0010010
.......................................................................GTTG--AAGGAACAGATTTCT..................................................................................................................................................................................................................................................................................................................................................................1911.0010010
...........................................................TAATAGAAGGTGGTTG--AAG..............................................................................................................................................................................................................................................................................................................................................................................1911.0010100
............................................................................................................................................................................................................................................................................................................................AACCAAAAGGAAG-A----------------------------------------------------GAA-------------------------------------------ACCAG------G.....2311.0010100
...................................................................................................................................................................................................................................................................CTCC-----------TT--GTTCAGCTACGTT...........................................................................................................................................................1911.0010010
.................................................................AAGGTGGTTG--AAGGAACAG........................................................................................................................................................................................................................................................................................................................................................................1911.0011000
..............................................................................................................................................................................................................................................................CACATCTCC-----------TT--GTTCAGCTACGTTTTAAT......................................................................................................................................................2911.0011000
........................................................................TTG--AAGGAACAGATTTCTT.................................................................................................................................................................................................................................................................................................................................................................1911.0010010
................................................................................................................................................................................................................................................................CATCTCC-----------TT--GTTCAGCTACGT............................................................................................................................................................2111.0010100
........................................................................................................................................................................................TAGCAA------TTGG---ACACTAAGCT.........................................................................................................................................................................................................................................2011.0010100
.............................................................................................................................................................................................................................................................................................................................ACCAAAAGGAAG-A----------------------------------------------------GAA-------------------------------------------ACCAG------AA....2311.0011000
...........................................................................................................................................................................................................ACACTAAGCTAAATGTTAAA...............................................................................................................................................................................................................................2011.0010100
................................................GTGACTA--ACTAATAGAAGGTG.......................................................................................................................................................................................................................................................................................................................................................................................2111.0011000
......................................................A--ACTAATAGAAGGTGGTTG--AAGGAAC..........................................................................................................................................................................................................................................................................................................................................................................2611.0010100
.............................................................................AAGGAACAGATTTCTTATT--------T-TCTATC-T............................................................................................................................................................................................................................................................................................................................................2711.0011000
...............................................AGTGACTA--ACTAATAGAAGGTG.......................................................................................................................................................................................................................................................................................................................................................................................2211.0011000
..........................................................CTAATAGAAGGTGGTTG--AAG..............................................................................................................................................................................................................................................................................................................................................................................2011.0010100
...........................................................................................................................................................................................CAA------TTGG---ACACTAAGCTAAAT.....................................................................................................................................................................................................................................2111.0010010
....................................................................GTGGTTG--AAGGAACAGATTTCT..................................................................................................................................................................................................................................................................................................................................................................2211.0010001
...................................................................................................................................................................................................................................................TTACAAGAAA-CACATCTCC-----------TT--GTTCAGC.................................................................................................................................................................2811.0011000
................................................................GAAGGTGGTTG--AAGGAACA.........................................................................................................................................................................................................................................................................................................................................................................1911.0010010
..........................................................................................................................................................................................................................TTAAAACCA------T--CAGACAGTTACAAGA...................................................................................................................................................................................................2511.0010010
............................................................................................................................................................................................................................................................................................................C---------AAAAGAAACCAAAAGGAAG-A----------------------------------------------------GAA-------------------------------------------ACC..............2711.0010100
................................................GTGACTA--ACTAATAGAAGGTGGT.....................................................................................................................................................................................................................................................................................................................................................................................2311.0010010
.........................................................................................................................................TAACCAC--GTAAACATAGC--------------T--ACCA............................................................................................................................................................................................................................................................................2311.0010010
dm3
TAGGCGCAG--------------CCGCTTCTGTAAAAGCTACTTT--AGTGACTA--ACTAATAGAAGGTAGTTG--AAGGAACAGATTTCTTGTT--------T-TCTATC-TC------------AACCGTA-ACTAACCAC--GTAAACATAGC--------------T--ACCACTAATCTAGCAA------TTGG---ACACTAAGCTAAATGTTAAAACCATTAAGAT--CAGACAGTTACAAGAAA-CACATCTCC-----------TT--GTTCAGCTACGTTTTATTTTACC---------AAAAAAAACCAAAAGGAAGAA----------------------------------------------------GTA-------------------------------------------ACCAG------AAATAASizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
....................................................................GTAGTTG--AAGGAACAGATTTCT..................................................................................................................................................................................................................................................................................................................................................................22113.00130000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000060000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000011200000000000000000000100000000020000000000000000000000000
....................................................................GTAGTTG--AAGGAACAGATTTC...................................................................................................................................................................................................................................................................................................................................................................2118.0080000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001100000000000020000000003000000000000000000000010000000000
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..........................................................................................................................................................AGC--------------T--ACCACTAATCTAGCAA------TTGG---...................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
.............................................................................................GTT--------T-TCTATC-TC------------AACCGTA-AC.....................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................T--GTTCAGCTACGTTTTATTTTACC---------A.......................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................AGCTACTTT--AGTGACTA--ACTAATA..............................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................T-TCTATC-TC------------AACCGTA-ACTAA..................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................CATTAAGAT--CAGACAGTTAC.......................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000
..............................................................TAGAAGGTAGTTG--AAGGAACAGAT......................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................ATCTAGCAA------TTGG---ACACTAAGCTAA.......................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................GTT--------T-TCTATC-TC------------AACCGTA-ACTAACC................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................T--AGTGACTA--ACTAATAGAAGGTAG......................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................CAAGAAA-CACATCTCC-----------TT--GTTCAGC.................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
.......AG--------------CCGCTTCTGTAAAAGCTACTTT--AGTGAC.........................................................................................................................................................................................................................................................................................................................................................................................................3011.0010000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................GTTAAAACCATTAAGAT--CAGA..............................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................TGTTAAAACCATTAAGAT--C.................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................TTGG---ACACTAAGCTAAATGTTAAAA..............................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................TACC---------AAAAAAAACCAAAAGGAAGAA----------------------------------------------------GT.............................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................TAAACATAGC--------------T--ACCACTAATC......................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000
.........................................................................................................................................................................................................................................T--CAGACAGTTACAAGAAA-C...............................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................A------TTGG---ACACTAAGCTAAATGTTAA................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................ACC---------AAAAAAAACCAAAAGGAAGAA----------------------------------------------------GT.............................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................TT--AGTGACTA--ACTAATAGAAGGTAGT.....................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000
.....................................................................................................................................................................................................................AAATGTTAAAACCATTAAGAT--C.................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................TTCAGCTACGTTTTATTTTACC---------AAAAAA..................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................TAGAAGGTAGTTG--AAGGAAC..........................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000
................................................................................................................................................................................................................................................CAGTTACAAGAAA-CACATCTCC-----------TT--GT......................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................AGAAGGTAGTTG--AAGGAACAGATTTCT..................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................ACCAAAAGGAAGAA----------------------------------------------------GTA-------------------------------------------ACCAG------AA....2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
................................................................................................................................................................................................................................................................................................................................AAAAGGAAGAA----------------------------------------------------GTA-------------------------------------------ACCAG------A.....2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................GATTTCTTGTT--------T-TCTATC-TC------------AACCGT.........................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000
.........................................................................................................................................................................................................................................................................................CAGCTACGTTTTATTTTACC---------AAAAAA..................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................ACCAAAAGGAAGAA----------------------------------------------------GTA-------------------------------------------A................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................TTGG---ACACTAAGCTAAATGTTAAAACC............................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................ATAGAAGGTAGTTG--AAGGAACA.........................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000
...................................................................................................................................................................................................................................TTAAGAT--CAGACAGTTACAAGAAA-A...............................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000
......................................................................................................................................................................................................................................................................................GTTCAGCTACGTTTTATTTTA...................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000
..........................................TTT--AGTGACTA--ACTAATAG.............................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................ACCAAAAGGAAGAA----------------------------------------------------GTA-------------------------------------------ACCAG------AAAT..2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000
..............................................................TAGAAGGTAGTTG--AAGGAACAG........................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................CTAGCAA------TTGG---ACACTAAGCT.........................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................TTGG---ACACTAAGCTAAATGTTAAAAC.............................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................AAACCAAAAGGAAGAA----------------------------------------------------GTA-------------------------------------------ACC..............2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................AGGAAGAA----------------------------------------------------GTA-------------------------------------------ACCAG------AAATA.2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
.............................................................................................................................................................................................................ACTAAGCTAAATGTTAAAA..............................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................C-TC------------AACCGTA-ACTAACCAC--GTAAAC......................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................T--AGTGACTA--ACTAATAGAAGG.........................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................CC-----------TT--GTTCAGCTACGTTTTATT......................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................ATAGAAGGTAGTTG--AAGG.............................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000
...............................................................................................................................................C--GTAAACATAGC--------------T--ACCACTAATCTA....................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................GTGACTA--ACTAATAGAAGGTAGTT....................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................TG--AAGGAACAGATTTCTTGTT--------T-TCTATC-.............................................................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droEre2
TAGGCGCAG--------------CCGCTTCTGTAAAAGCTATTTT--AGTGACTA--ACTAATAGAAGGTAGTTA--AAGGAACCGATTTCTTGTT--------T-TCTATC-TC------------AACCGTA-ACTAACCAC--GTAAACATAGC--------------T--ACCACTAAACTAGCAA------TTGA---ACACTAAGCTAAATGTTATAACCATTAAGAT--CAGACAGTTGCAAGAAA-CACATCTCC-----------TT--GTTCAGCTACATTTTAATTACCC---------AAAGGAAACCAAAACGAAGAA----------------------------------------------------GAA-------------------------------------------ACCAG------AAATAASizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
............................................................AATAGAAGGTAGTTA--AAGGA............................................................................................................................................................................................................................................................................................................................................................................2012.0020001010
............................................................AATAGAAGGTAGTTA--AAG..............................................................................................................................................................................................................................................................................................................................................................................1812.0020100010
..................................................GACTA--ACTAATAGAAGGTAGT.....................................................................................................................................................................................................................................................................................................................................................................................2112.0020000020
...............................................................................................T--------T-TCTATC-TC------------AACCGTA-ACT....................................................................................................................................................................................................................................................................................................................2012.0021001000
..................................................................................................................................................................................................................................ATTAAGAT--CAGACAGTTGCAA.....................................................................................................................................................................................................2112.0020001100
.........................................................................................................................................................................................................................GTTATAACCATTAAGAT--CAGACAGT..........................................................................................................................................................................................................2512.0021000100
.................................AAAAGCTATTTT--AGTGACTA--ACT..................................................................................................................................................................................................................................................................................................................................................................................................2311.0010100000
............................................................................................................................................................................................AA------TTGA---ACACTAAGCTAAAT.....................................................................................................................................................................................................................................2011.0010000100
................................................................................................................................................................................................................................................................................................ATTTTAATTACCC---------AAAGGA..................................................................................................................................1911.0011000000
...............................................................................................T--------T-TCTATC-TC------------AACCGTA-AC.....................................................................................................................................................................................................................................................................................................................1911.0010000100
............................................................AATAGAAGGTAGTTA--AAGGAACCG........................................................................................................................................................................................................................................................................................................................................................................2411.0010000100
.........................................................................................................................................................................................................................GTTATAACCATTAAGAT--CAGACAGTTGC.......................................................................................................................................................................................................2811.0010000100
....................................................................................................................................................AAACATAGC--------------T--ACCACTAAACT.....................................................................................................................................................................................................................................................................2111.0011000000
.....................................................................................................................................................................................................................................AAGAT--CAGACAGTTGCAAGAAA-CAC.............................................................................................................................................................................................2511.0010100000
......................................................................................................................................................................................................................AATGTTATAACCATTAAGAT--CAGACA............................................................................................................................................................................................................2611.0010000100
...........................................................................................................................................................................................................................TATAACCATTAAGAT--CAGACAGT..........................................................................................................................................................................................................2311.0010000010
.....................................................................................................................................A-ACTAACCAC--GTAAACATAGC--------------T--ACCACT..........................................................................................................................................................................................................................................................................2811.0010000010
........................................................................................................................................................................................................................TGTTATAACCATTAAGAT--CAGACAGT..........................................................................................................................................................................................................2611.0011000000
.................................AAAAGCTATTTT--AGTGACTA--ACTAAT...............................................................................................................................................................................................................................................................................................................................................................................................2611.0010000010
...................................................................................................................................................................................................................................TTAAGAT--CAGACAGTTGCAAGA...................................................................................................................................................................................................2211.0010000010
......................................................................................ATTTCTTGTT--------T-TCTATC-TC------------AA.............................................................................................................................................................................................................................................................................................................................2111.0011000000
.........................................................................................................................................................................................................................GTTATAACCATTAAGAT--CAGA..............................................................................................................................................................................................................2111.0010000100
...................................................................................................................................................................................................................................TTAAGAT--CAGACAGTTGCAAGAAA-CAC.............................................................................................................................................................................................2711.0010000100
................................................GTGACTA--ACTAATAGAAGGT........................................................................................................................................................................................................................................................................................................................................................................................2011.0010000010
.................................AAAAGCTATTTT--AGTGACTA--.....................................................................................................................................................................................................................................................................................................................................................................................................2011.0011000000
............................................................................................................................................................................................................................................................................................................................AACCAAAACGAAGAA----------------------------------------------------GAA-------------------------------------------ACCAG------A.....2411.0010000100
..................................................................................................................................................................................................................................ATTAAGAT--CAGACAGTTGCAAGAAA-CAC.............................................................................................................................................................................................2811.0010000100
.........................................................................................................................................................................................AGCAA------TTGA---ACACTAAGCT.........................................................................................................................................................................................................................................1911.0010000010
.............................................................ATAGAAGGTAGTTA--AAGG.............................................................................................................................................................................................................................................................................................................................................................................1811.0010000010
...........................................................................................................................................................................................................................TATAACCATTAAGAT--CAGACAGTTGC.......................................................................................................................................................................................................2611.0010000100
...............................................................AGAAGGTAGTTA--AAGGAACC.........................................................................................................................................................................................................................................................................................................................................................................2011.0010000010
..............................................................................................TT--------T-TCTATC-TC------------AACCGTA-ACT....................................................................................................................................................................................................................................................................................................................2111.0010000010
............................................................AATAGAAGGTAGTTA--AAGG.............................................................................................................................................................................................................................................................................................................................................................................1911.0010001000
............................................T--AGTGACTA--ACTAATAGAAGGTA.......................................................................................................................................................................................................................................................................................................................................................................................2311.0010000010
..........................................................................................CTTGTT--------T-TCTATC-TC------------AACCGTA-ACT....................................................................................................................................................................................................................................................................................................................2511.0011000000
...........................................................................................................................................................................................................................................................AA-CACATCTCC-----------TT--GTTCAGCT................................................................................................................................................................2111.0010000010
.................................................................................................................................................................................................................................CATTAAGAT--CAGACAGTTGC.......................................................................................................................................................................................................2011.0010000100
...................................................................................................................................................................................................................................................................................T--GTTCAGCTACATTTTAAT......................................................................................................................................................1911.0010000010
.........................................................................................................................................................................................................................................................................................................................GGAAACCAAAACGAAGAA----------------------------------------------------GAA-------------------------------------------ACCAG------AA....2811.0011000000
..............................................................................................................................................................................ACCACTAAACTAGCAA------TT........................................................................................................................................................................................................................................................1811.0010000010
.........................................................................................................................................TAACCAC--GTAAACATAGC--------------T--AC..............................................................................................................................................................................................................................................................................2111.0011000000
...............................................................AGAAGGTAGTTA--AAGGAACCGATT.....................................................................................................................................................................................................................................................................................................................................................................2411.0011000000
....................................................................GTAGTTA--AAGGAACCGATT.....................................................................................................................................................................................................................................................................................................................................................................1911.0011000000
........................................................................................................T-TCTATC-TC------------AACCGTA-ACTA...................................................................................................................................................................................................................................................................................................................2011.0011000000
........................................................................TTA--AAGGAACCGATTTCTTGTT--------T-TCT.................................................................................................................................................................................................................................................................................................................................................2611.0010010000
..........................................................CTAATAGAAGGTAGTTA--AAGG.............................................................................................................................................................................................................................................................................................................................................................................2111.0010000010
droYak3
T-GGCGTAG--------------CCGCTTCTGTAAAAGCTACTTT--AGTGACTA--ACTA-TAGAAGATAGTGA--AAGGAACAGATTTATTGTT--------TTTTTATC-TC------------AACCGTA-ACTAATCCC--GTAAACATAGC--------------T--ACCACTAAACTAGCAA------TTGA---ACACTAAGCTAAATGTTATAACCATTAAGAA--GAGACAGTTGCAAGAAA-CACATCTCC-----------TT--GTTCAGCTACGTTTTAATTACCG---------AAAAGAATCCAAAAGGAAGAA----------------------------------------------------GAA-------------------------------------------AACAG------AAATAASizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
............................................................A-TAGAAGATAGTGA--AAGGAACA.........................................................................................................................................................................................................................................................................................................................................................................2215.00503000020000
............................................................A-TAGAAGATAGTGA--AAGGA............................................................................................................................................................................................................................................................................................................................................................................1914.00400100030000
......................................................................AGTGA--AAGGAACAGATTTATTGT...............................................................................................................................................................................................................................................................................................................................................................2314.00400000040000
...............................GTAAAAGCTACTTT--AGTGACT........................................................................................................................................................................................................................................................................................................................................................................................................2113.00302000010000
............................................................A-TAGAAGATAGTGA--AAGGAAC..........................................................................................................................................................................................................................................................................................................................................................................2113.00330000000000
............................................................A-TAGAAGATAGTGA--AAGGAACAGA.......................................................................................................................................................................................................................................................................................................................................................................2412.00201000010000
........................................................................................................................................................................................................................TGTTATAACCATTAAGAA--GA................................................................................................................................................................................................................2012.00201000010000
...............................................................................................T--------TTTTTATC-TC------------AACCGTA-ACT....................................................................................................................................................................................................................................................................................................................2112.00210000010000
..............................................................................................................................................................................................................................................................................................................................CCAAAAGGAAGAA----------------------------------------------------GAA-------------------------------------------AACAG------A.....2212.00200000020000
...........................................................................................................................................................................................................................................................................................................................AATCCAAAAGGAAGAA----------------------------------------------------GAA-------------------------------------------AACAG------AA....2612.00201000010000
...........................................................TA-TAGAAGATAGTGA--AAGGA............................................................................................................................................................................................................................................................................................................................................................................2012.00200000020000
............................................................A-TAGAAGATAGTGA--AAGGAACAG........................................................................................................................................................................................................................................................................................................................................................................2312.00201100000000
..................................................GACTA--ACTA-TAGAAGATAGT.....................................................................................................................................................................................................................................................................................................................................................................................2012.00200000020000
...................................................................GATAGTGA--AAGGAACAGATTTATTGT...............................................................................................................................................................................................................................................................................................................................................................2612.00200000020000
.................................................................................................................................................................................................................................................................................................................................AAAGGAAGAA----------------------------------------------------GAA-------------------------------------------AACAG------A.....1912.00200000020000
............................................................................................................................................................................................................................................................................................................................ATCCAAAAGGAAGAA----------------------------------------------------GAA-------------------------------------------AACAG------A.....2412.00200000020000
....................................................................................................................................................................................................................................TAAGAA--GAGACAGTTGCAAG....................................................................................................................................................................................................2012.00201100000000
............................................................A-TAGAAGATAGTGA--AAGG.............................................................................................................................................................................................................................................................................................................................................................................1812.00201100000000
.....................................GCTACTTT--AGTGACTA--ACT..................................................................................................................................................................................................................................................................................................................................................................................................1911.00100100000000
............................TCTGTAAAAGCTACTTT--AGTGACTA--A....................................................................................................................................................................................................................................................................................................................................................................................................2611.00100000010000
..............................................................................................................................................................................ACCACTAAACTAGCAA------TTGA---ACACG..............................................................................................................................................................................................................................................2511.00110000000000
.......................................................................................................................................................................................................................................GAA--GAGACAGTTGCAAGAAA-CACATCTC........................................................................................................................................................................................2811.00100000010000
...........................TTCTGTAAAAGCTACTTT--AGTGACTA--AC...................................................................................................................................................................................................................................................................................................................................................................................................2811.00100100000000
................................................................GAAGATAGTGA--AAGGAACAG........................................................................................................................................................................................................................................................................................................................................................................2011.00100100000000
.................................AAAAGCTACTTT--AGTGACTA--A....................................................................................................................................................................................................................................................................................................................................................................................................2111.00100000010000
...................................AAGCTACTTT--AGTGACTA--ACT..................................................................................................................................................................................................................................................................................................................................................................................................2111.00100100000000
..........................................................................................................................................AATCCC--GTAAACATAGC--------------T--ACCACTAAA.......................................................................................................................................................................................................................................................................2711.00100000010000
.........................................................ACTA-TAGAAGATAGTGA--AAGGAACA.........................................................................................................................................................................................................................................................................................................................................................................2511.00100000010000
........................................................................................TTATTGTT--------TTTTTATC-TC------------AACCGT.........................................................................................................................................................................................................................................................................................................................2411.00100000010000
...........................................................................................................................................................................................................................................................................................................................AATCCAAAAGGAAGAA----------------------------------------------------GAA-------------------------------------------AAC..............2211.00100001000000
....................................................................ATAGTGA--AAGGAACAGATTTATTGT...............................................................................................................................................................................................................................................................................................................................................................2511.00100000010000
..................................................................................................................................................GTAAACATAGC--------------T--ACCACTAAACTAGC..................................................................................................................................................................................................................................................................2611.00101000000000
............................................................................................................................................................................................................................................................................................................................ATCCAAAAGGAAGAA----------------------------------------------------GAA-------------------------------------------AAC..............2111.00100000010000
.......................................................................................TTTATTGTT--------TTTTTATC-TC------------AACCGT.........................................................................................................................................................................................................................................................................................................................2511.00100000010000
.....................................................................................................................................................................................................................................AAGAA--GAGACAGTTGCAAGA...................................................................................................................................................................................................2011.00100000010000
...............................................................AGAAGATAGTGA--AAGGAACAGA.......................................................................................................................................................................................................................................................................................................................................................................2211.00101000000000
......................................................................................................................................................................................................................................................................................................................AAAAGAATCCAAAAGGAAGAA----------------------------------------------------GAA-------------------------------------------.................2411.00101000000000
...............................................................................................T--------TTTTTATC-TC------------AACCGTA-ACTAATCCC--GT..........................................................................................................................................................................................................................................................................................................2911.00100000010000
........................................................................................................................................................................................................................................................................................TCAGCTACGTTTTAATTAC...................................................................................................................................................1911.00101000000000
.........................................................................................................................................................................................................................GTTATAACCATTAAGAA--GAGACA............................................................................................................................................................................................................2311.00100000010000
................................................................................................................................................................................................................................................................................................GTTTTAATTACCG---------AAAAGA..................................................................................................................................1911.00101000000000
......................................................................................ATTTATTGTT--------TTTTTATC-TC------------AACCGT.........................................................................................................................................................................................................................................................................................................................2611.00100000010000
......................................................................................................................................................................................................................................AGAA--GAGACAGTTGCAAG....................................................................................................................................................................................................1811.00100000010000
.....................................................................................................................................................................................................................................................GCAAGAAA-CACATCTCC-----------TT--........................................................................................................................................................................1911.00101000000000
...............................................................AGAAGATAGTGA--AAGGAAC..........................................................................................................................................................................................................................................................................................................................................................................1911.00101000000000
....................................................CTA--ACTA-TAGAAGATAGTGA--AAGGAACA.........................................................................................................................................................................................................................................................................................................................................................................2811.00100100000000
.......................................................................................................................................................................................................................ATGTTATAACCATTAAGAA--GAGA..............................................................................................................................................................................................................2311.00100100000000
...............................................................................................................................................................................................................................................................................................................................CAAAAGGAAGAA----------------------------------------------------GAA-------------------------------------------AACA.............1911.00100000010000
...................................................................................................................................................................................................................................TTAAGAA--GAGACAGTTGCAAGAAA-CA..............................................................................................................................................................................................2611.00100000010000
.............................................................................................................................................................................................................................................................................................................................TCCAAAAGGAAGAA----------------------------------------------------GAA-------------------------------------------AACAG------AA....2411.00101000000000
.....................................................................................................................................A-ACTAATCCC--GTAAACATAGC--------------T--ACCAC...........................................................................................................................................................................................................................................................................2711.00101000000000
.........................................................................................TATTGTT--------TTTTTATC-TC------------AACCGT.........................................................................................................................................................................................................................................................................................................................2311.00101000000000
................................................................................................................................................................................................................................................................................................................................AAAAGGAAGAA----------------------------------------------------GAA-------------------------------------------AACAG------AA....2111.00100000010000
..........................................................................................................................................................................................................................................................................................................................GAATCCAAAAGGAAGAA----------------------------------------------------GAA-------------------------------------------AACAG------A.....2611.00101000000000
............................................................................................................................................................................................................................ATAACCATTAAGAA--GAGACAGTTGCAAG....................................................................................................................................................................................................2811.00100000010000
........................................................................................................................................................................................................................................................AGAAA-CACATCTCC-----------TT--GTTCAGCTACGT............................................................................................................................................................2811.00101000000000
...........................................................TA-TAGAAGATAGTGA--AAGGAACAGAT......................................................................................................................................................................................................................................................................................................................................................................2611.00100000010000
.................................................................AAGATAGTGA--AAGGAACAGATTTATTGT...............................................................................................................................................................................................................................................................................................................................................................2811.00100000010000
...............................................................AGAAGATAGTGA--AAGGAACA.........................................................................................................................................................................................................................................................................................................................................................................2011.00100000010000
..............................................................................................................................................................................................................................AACCATTAAGAA--GAGACAGTT.........................................................................................................................................................................................................2111.00100000010000
......................................................................................ATTTATTGTT--------TTTTTATC-TC------------AACC...........................................................................................................................................................................................................................................................................................................................2411.00101000000000
.......................................................................................................................................................................................................................................................................................................TTACCG---------AAAAGAATCCAAAAGGAAGAA----------------------------------------------------...............................................................2711.00101000000000
............................................................................................TGTT--------TTTTTATC-TC------------AACCGT.........................................................................................................................................................................................................................................................................................................................2011.00100000010000
......................................................................................................................................................................................................................................AGAA--GAGACAGTTGCAAGA...................................................................................................................................................................................................1911.00100000010000
...............................................................................................................................................................................................................................................................................................................................CAAAAGGAAGAA----------------------------------------------------GAA-------------------------------------------AACAG------A.....2111.00100000010000
.......................................................................................................................................................................................CTAGCAA------TTGA---ACACTAAGCT.........................................................................................................................................................................................................................................2111.00101000000000
......................................................A--ACTA-TAGAAGATAGTGA--AAGGAACAGA.......................................................................................................................................................................................................................................................................................................................................................................2811.00100000010000
.............................................................................................................................................................................................................................TAACCATTAAGAA--GAGACAGTTGCAAGA...................................................................................................................................................................................................2811.00100000010000
....................................................................................................................................................................................................TTGA---ACACTAAGCTAAATGTT..................................................................................................................................................................................................................................2111.00101000000000
...................................................................GATAGTGA--AAGGAACAGATTTAT..................................................................................................................................................................................................................................................................................................................................................................2311.00100000010000
.......................................................................................................................................................................................................................................GAA--GAGACAGTTGCAAGAAA-CACA............................................................................................................................................................................................2411.00100000010000
.....................................................................TAGTGA--AAGGAACAGATTTATTGT...............................................................................................................................................................................................................................................................................................................................................................2411.00100000010000
...................................................................................................................................................................................................................................TTAAGAA--GAGACAGTTGCAAGA...................................................................................................................................................................................................2211.00100000010000
............................................................................................................................................................................................................................................................................................................................ATCCAAAAGGAAGAA----------------------------------------------------GAA-------------------------------------------AACAG------AA....2511.00100000010000
droEug1
TAGACGTAG--------------CCGCTTCTGTAAAAGCTACTTT--AGTGACTA--ACTAATAGAAGGTAGTTG--AAGGGACATATTTCTTGTT--------T-TCTATC-TC------------AACCGTA-ACTAACCAC--GTAAACATAGC--------------T--ACCACTTAACTAGCAT------TCAA---ACACTAAGCGTAATGTTAAA-CCATAAAGAT--CAGGCAACTACAAGAAATCACATCTCC-----------TT--GTTCAGCTACGTTTTAATTTACC---------AAAAGAAACCAAAAGGAA--A----------------------------------------------------GAA-------------------------------------------ATCCG------AAATAASizeHit CountTotal NormTotal
No Reads
droBia1
TAGACGTAG--------------CCGCTTCTGTAAAAGCTACTTT--AGTGACTA--ACTAATAGAAGGTAGTTG--GAGGGACATATTTCTTGTT--------T-TCTATC-TC------------AACCGTA-ACTAACCAC--GTAATAATAGC--------------T--ACCACTAAACTAGCAT------TCGA---ACACTAAGCGTAATGTTAAAACCATAAAGAT--CAGACAACTACGAGAAAAGCCCTCTTC-----------TT--GTTCAGCTACGTTTTAATTTACC---------AAA--AAACCGAAAGGAA--A----------------------------------------------------GAA-------------------------------------------ACCAG------AAATAASizeHit CountTotal NormTotal
No Reads
droTak1
TAGACGTAG--------------CCGCTTCTGTAAAAGCTACTTT--AGTGACTA--ACTAATAGAAGGTAGTTG--GAGGGACATAT-TCTTGTT--------T-TCTATC-TC------------AACCGTA-ACTAACCAC--GTAATAATAGC--------------T--ACCACTAAACTAGCAA------TCGA---ACACTAAGCATAATGTTAAAACCATAAAGAT--CAGACAATTACAAGAAAACACATCTCC-----------TT--GTTCAGCTACGTTTTAATTTGCC---------AAAAGAAACCAAAAGGAA--A----------------------------------------------------GAA-------------------------------------------ACCAG------AAATAASizeHit CountTotal NormTotal
No Reads
droEle1
TAGACGTAG--------------CCGCTTCTGTAAAAGCTACTTT--AGTGACTA--ACTAATAGAAGGTAGTTG--GAGGGACATATTTCTTGTT--------T-TCTATC-TC------------AACCGTA-ACTAACCAC--GTAAACATAGC--------------T--ACCACTAAACTAGCAA------TTGA---ACACTAAGCGTAATGTTAAAATCGTAAAGAT--CAGACAGCTACAAGACA-CACCTCTCC-----------TT--GTTCAGCTACGTTTTAATTAACC---------AAAAGAAACCAAAAGAAA-------------------------------------------------------AAA-------------------------------------------AACAG------AAATAASizeHit CountTotal NormTotal
No Reads
droRho1
TAGACGTAG--------------CCGCTTCTGTAAAAGCTACTTT--AGTGACTAAAACTAATAGAAGGTAGTTG--GAGGGACATATTTCTTGTT--------T-TCTATC-TC------------AACAGTA-ACTAACCAC--GTAAACATAGC--------------T--ACCACTAAACTAGCAA------TCGA---ACACTAAGCGTAATGTTAAAATCATAAAGAT--CAGACAGCTACAAGAAAACACAACTCC-----------TT--GTTCAGCTACGTTTTAATTTACC---------AAAAGAAACCAAAAGAA--------------------------------------------------------AAA-------------------------------------------ACCAG------AAATAASizeHit CountTotal NormTotal
No Reads
droFic1
GAGACGTAG--------------CCGCTTCTGTAAAAGCTACTTT--AGTGACTA--ACTAGTAGAAGGTAGTTT--GAGGGACATATTTCTTGTT--------T-TCAATC-TC------------AACCGTA-ACTAACCAC--GTAATCATAGC--------------T--ACCACTAAACTAGCAA------TCAA---ACACTAAGCGTAATGTTAAA-CCATAAAGAT--CAGACAACTACAAGAGAACAAAACTCC-----------TT--GTTCAGCTACGTTTTAATTTACC---------AAAAGAAACCAAACGGAA-------------------------------------------------------GAA-------------------------------------------ATCAG------AAATAASizeHit CountTotal NormTotal
No Reads
droKik1
TAGACGTAG--------------CCGCTTCTGTAAAAGCTCCTTTATAGTGACTA--ACTAATAGAAGGT-------GACCGACCGATTTCTCGTTTTTG-AT-T-TCGATT-TC------------AACAATA-ACTAATCAC--GTAAACATAGCAACT----------T--ACCAGTAAACTAGCAA------GCGA---ACACTAAGCGTAATGTTAAATCCATAAAGAA--CCGGCGGC-------------AACTGCAACA-----AACT--GT------------------ATT-----------CAGAAACTGAAGCGAT--C----------------------------------------------------GAA----------------C--------------------------CCGAG------AAATAASizeHit CountTotal NormTotal
No Reads
droAna3
TTAACGTAG--------------CCGCTTCTGTAAAAGCTACTTT--AGTGACTA--ACTAGTAGACGGTAGTGG--GAGAGACGGATTTCTTGTT--------T-TCTATT-TC------------AACAGTA-ACTAACCAC--GTAAACATAGC--------------A--ACCACTAAACTAGCAA------ACGA---ACACTAAGCGTAATGTTAAACTCATTAAGAT--CAGACAACTATAG-------CATCTCCAACACTC-AAATT--GTTCAGCTACGTTTTTATTAATC---------GAAAGAAACCGAAAGGAA--T----------------------------------------------------GAG-------------------------------------------AACAG------AAATAASizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
........................................................................................................................................................................................................................................................................ACACTC-AAATT--GTTCAGCTACGT............................................................................................................................................................2313.003200010
....................................................................................................................................................AAACATAGC--------------A--ACCACTAAACTAGC..................................................................................................................................................................................................................................................................2412.002110000
............................................................AGTAGACGGTAGTGG--GAGA.............................................................................................................................................................................................................................................................................................................................................................................1912.002200000
............................................................AGTAGACGGTAGTGG--GAGAGA...........................................................................................................................................................................................................................................................................................................................................................................2112.002110000
..........................................................CTAGTAGACGGTAGTGG--GAGA.............................................................................................................................................................................................................................................................................................................................................................................2112.002101000
..................................................GACTA--ACTAGTAGACGGTAGTGG--GAGA.............................................................................................................................................................................................................................................................................................................................................................................2712.002010010
...............................GTAAAAGCTACTTT--AGTGACTA--ACT..................................................................................................................................................................................................................................................................................................................................................................................................2511.001010000
................................................................................................................................................................................................................................................................................................................................GAAAGGAA--T----------------------------------------------------GAG-------------------------------------------AACAG------AAATA.2211.001000100
......................................................................................................................................................................................................................................................................................GTTCAGCTACGTTTTTATTAA...................................................................................................................................................2111.001100000
.......................................................................................................................................................................................................................................................................................................................AAAGAAACCGAAAGGAA--T----------------------------------------------------GAG-------------------------------------------AACA.............2511.001100000
............................................................................................................................................................................................................................................................................................................................AACCGAAAGGAA--T----------------------------------------------------GAG-------------------------------------------AACAG------A.....2211.001010000
............................................................................................................................................................................................................................................................................................................C---------GAAAGAAACCGAAAGGAA--T----------------------------------------------------GAG-------------------------------------------AACA.............2711.001100000
...................................................................GGTAGTGG--GAGAGACGGATTTCTTGT...............................................................................................................................................................................................................................................................................................................................................................2611.001100000
......................................................A--ACTAGTAGACGGTAGTGG--GAGA.............................................................................................................................................................................................................................................................................................................................................................................2311.001010000
.........................................................ACTAGTAGACGGTAGTGG--GAGAGACG.........................................................................................................................................................................................................................................................................................................................................................................2611.001100000
......................................................................................................................................................................................................................................................................................................................GAAAGAAACCGAAAGGAA--T----------------------------------------------------GAG-------------------------------------------AACA.............2611.001100000
......................................................................................................................................................................................................................................................................................GTTCAGCTACGTTTTTATTA....................................................................................................................................................2011.001100000
..........................................................................................................................................AACCAC--GTAAACATAGC--------------A--AC..............................................................................................................................................................................................................................................................................2011.001010000
.................................................................................GACGGATTTCTTGTT--------T-TCTATT-TC------------AACA...........................................................................................................................................................................................................................................................................................................................2811.001010000
................................................GTGACTA--ACTAGTAGACGGT........................................................................................................................................................................................................................................................................................................................................................................................2011.001010000
......................................................................AGTGG--GAGAGACGGATTTCT..................................................................................................................................................................................................................................................................................................................................................................2011.001000010
...............................................................................................................................................................................CCACTAAACTAGCAA------ACG.......................................................................................................................................................................................................................................................1811.001000100
.............................................................................................................ATT-TC------------AACAGTA-ACTAACCAC--GTA.........................................................................................................................................................................................................................................................................................................2411.001100000
..................................................................................................................................................GTAAACATAGC--------------A--ACCACTAAACTAGC..................................................................................................................................................................................................................................................................2611.001010000
...........................................................................................................CTATT-TC------------AACAGTA-ACTAACCAC--GT..........................................................................................................................................................................................................................................................................................................2511.001001000
.......................................................................................................................................................................................................................................GAT--CAGACAACTATAG-------CAT...........................................................................................................................................................................................1911.001010000
...............................................................AGACGGTAGTGG--GAGAGACG.........................................................................................................................................................................................................................................................................................................................................................................2011.001010000
........................................................................................................................................................ATAGC--------------A--ACCACTAAACTAGCAA------ACGA---...................................................................................................................................................................................................................................................2611.001010000
.....................................................................................................................................................................................................................................AAGAT--CAGACAACTATAG-------CATCTCC.......................................................................................................................................................................................2511.001010000
............................................................................................................................................................................................AA------ACGA---ACACTAAGCGTAAT.....................................................................................................................................................................................................................................2011.001000100
.......................................................................................................................................................................................................................................................................................................................AAAGAAACCGAAAGGAA--T----------------------------------------------------GAG-------------------------------------------AACAG------......2611.001000010
....................................................................................................................................................................................................................................................TATAG-------CATCTCCAACACTC-AAAT...........................................................................................................................................................................2311.001100000
................................................................GACGGTAGTGG--GAGAGACGG........................................................................................................................................................................................................................................................................................................................................................................2011.001100000
.......................................................................GTGG--GAGAGACGGATTTCTTGTT--------......................................................................................................................................................................................................................................................................................................................................................2311.001000010
.........................................................................................................................................................................................AGCAA------ACGA---ACACTAAGCGTAATG....................................................................................................................................................................................................................................2411.001010000
...................................................................................................................................................................................................................................................................................T--GTTCAGCTACGTTTTTATTAATC---------G.......................................................................................................................................2511.001000001
.........................................................................................................................................................................................................................................................................CACTC-AAATT--GTTCAGCTACGT............................................................................................................................................................2211.001010000
............................................................................................................................................................................................................................AAACTCATTAAGAT--CAGACAACC.........................................................................................................................................................................................................2311.001010000
...............................................................................................................................................................................................................................CTCATTAAGAT--CAGACAACT.........................................................................................................................................................................................................2011.001000010
..AACGTAG--------------CCGCTTCTGTAAA..........................................................................................................................................................................................................................................................................................................................................................................................................................2011.001100000
......................................................................AGTGG--GAGAGACGGATTTCTTGTT--------T-T...................................................................................................................................................................................................................................................................................................................................................2611.001000010
...........................................................................................................CTATT-TC------------AACAGTA-ACTAAC.................................................................................................................................................................................................................................................................................................................2011.001010000
.............................................................GTAGACGGTAGTGG--GAGA.............................................................................................................................................................................................................................................................................................................................................................................1811.001001000
...............................................................................................T--------T-TCTATT-TC------------AACAGTA-ACT....................................................................................................................................................................................................................................................................................................................2011.001010000
.....................................................................................................................................A-ACTAACCAC--GTAAACATAGC--------------...................................................................................................................................................................................................................................................................................2111.001010000
..................................................................................................................C------------AACAGTA-ACTAACCAC--GT..........................................................................................................................................................................................................................................................................................................1911.001010000
...ACGTAG--------------CCGCTTCTGTAAAAG........................................................................................................................................................................................................................................................................................................................................................................................................................2111.001100000
...........................................................................................................................................................................................CAA------ACGA---ACACTAAGCGTAAT.....................................................................................................................................................................................................................................2111.001000010
...............................................................AGACGGTAGTGG--GAGAGACGG........................................................................................................................................................................................................................................................................................................................................................................2111.001100000
.......AG--------------CCGCTTCTGTAAAAGCT......................................................................................................................................................................................................................................................................................................................................................................................................................1911.001100000
.........................................................................................................................................................................................AGCAA------ACGA---ACACTAAGC..........................................................................................................................................................................................................................................1811.001100000
..................................................................................................................................................................................................................................ATTAAGAT--CAGACAACTATAG-------CATC..........................................................................................................................................................................................2511.001000010
.............................................................GTAGACGGTAGTGG--GAGTA............................................................................................................................................................................................................................................................................................................................................................................1930.331000010
droBip1
TTAACGTAG--------------CCGCTTCTGTAAAAGCTACTTT--AGTGACTA--ACTACTAGACGGTAGTGG--GAGAGACGGATTTCTTGAT--------T-TCTATT-TC------------AACAGTA-ACTAACCAC--GTAAACATAGC--------------A--ACCACTAAACTAGCAA------ACGA---ACACTAAGCGTAATGTTAAACTCATTAAGAT--CAGACAACTACAG-------CATCTCCAACACAAAAAATT--GTTCAGCTACGTTTTTATTAACT---------AAAAGAACCCGAGAGGAT--T----------------------------------------------------GAG-------------------------------------------AACAG------AAATAASizeHit CountTotal NormTotal
No Reads
dp5
TAGACGTAGC-------------CCGCTTCTGTAAAAGCTACTCT--AGTGACTA--ACTAATAGAAGGTACTAGCTGAGACACAGATATCTTGTT--------T-TCTAACTTC------------AAAAGCAAACTAACCACAGGCAA----------------------------ATCAAATAGCAA------ACAAAACACACTAAGCGTAATGTTAAAATCACTCA-ATCCCACACAACTAC---------------------------TACACTTGAGCTACGTTTTAATTAAAGAACAAACAG----------------------AT---------------------GCAAAATACCA-------A---ACGAGAGAA-------------------------------------------TCGAA------AAATAASizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
....................................................................GTACTAGCTGAGACACAGAT......................................................................................................................................................................................................................................................................................................................................................................2013.0030300000000
...............................................................................................T--------T-TCTAACTTC------------AAAAGCAAACTA...................................................................................................................................................................................................................................................................................................................2312.0020200000000
...............................GTAAAAGCTACTCT--AGTGACT........................................................................................................................................................................................................................................................................................................................................................................................................2112.0020200000000
............................................................................................................................................CCACAGGCAA----------------------------ATCAAATAGCAA------ACA.......................................................................................................................................................................................................................................................2511.0010001000000
.....GTAGC-------------CCGCTTCTGTAAAAG........................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010100000000
..............................................................TAGAAGGTACTAGCTGAGACACAGAT......................................................................................................................................................................................................................................................................................................................................................................2611.0010100000000
......................................................................................................................................................................................................................................A-ATCCCACACAACTAC---------------------------TACACTTGAGCT................................................................................................................................................................2811.0010000001000
...................................................................GGTACTAGCTGAGACACAG........................................................................................................................................................................................................................................................................................................................................................................1911.0010100000000
........................................................................................................................................................................................................................................ATCCCACACAACTAC---------------------------TACACT......................................................................................................................................................................2111.0010100000000
......................................................................ACTAGCTGAGACACAGATATCTT.................................................................................................................................................................................................................................................................................................................................................................2311.0010000100000
...............................................................AGAAGGTACTAGCTGAGACAC..........................................................................................................................................................................................................................................................................................................................................................................2111.0010100000000
...........................................................................................................................................................................................CAA------ACAAAACACACTAAGCGT........................................................................................................................................................................................................................................2111.0010000001000
......................................................................ACTAGCTGAGACACAGATATCTTGT...............................................................................................................................................................................................................................................................................................................................................................2511.0010100000000
.............................................................ATAGAAGGTACTAGCTGAGAC............................................................................................................................................................................................................................................................................................................................................................................2111.0010100000000
...................................................................................................................................................................................................................................................................................................................CAG----------------------AT---------------------GCAAAATACCA-------A---ACGAGAG..............................................................2411.0010000001000
..............................................................................................................................................................................................................................................................................................................ACAAACAG----------------------AT---------------------GCAAAATACCA-------A---AC...................................................................2411.0010010000000
...............................................................................................................................AAAAGCAAACTAACCACAGGCAA----------------------------............................................................................................................................................................................................................................................................................2311.0010100000000
..................................................................................................................................................................................................................................................ACTAC---------------------------TACACTTGAGCTACGTT...........................................................................................................................................................2211.0010000001000
...........................................................TAATAGAAGGTACTAGCTG................................................................................................................................................................................................................................................................................................................................................................................1911.0010100000000
.............................................................................................................................................................................................................................................ACACAACTAC---------------------------TACACTTGAGCTAC..............................................................................................................................................................2411.0010010000000
.............................CTGTAAAAGCTACTCT--AGTGA..........................................................................................................................................................................................................................................................................................................................................................................................................2111.0010100000000
............................................................................................................................................................................................................................................................................................................................................AT---------------------GCAAAATACCA-------A---ACGAGAGAA-------------------------------------------T................2411.0010100000000
.......................................................................................................................................................................................................................................................................................TTGAGCTACGTTTTAATTAAA..................................................................................................................................................2111.0010100000000
..................................AAAGCTACTCT--AGTGACTA--AC...................................................................................................................................................................................................................................................................................................................................................................................................2111.0010001000000
............................................................AATAGAAGGTACTAGCTGAGAC............................................................................................................................................................................................................................................................................................................................................................................2211.0010100000000
............................................................................................................................................................................................................................AAAATCACTCA-ATCCCACAC.............................................................................................................................................................................................................2011.0010001000000
......................................................A--ACTAATAGAAGGTACTAGC..................................................................................................................................................................................................................................................................................................................................................................................2011.0010100000000
........................................................................................................................................................................................................................................ATCCCACACAACTAC---------------------------TACAC.......................................................................................................................................................................2011.0010100000000
...............................................................AGAAGGTACTAGCTGAGA.............................................................................................................................................................................................................................................................................................................................................................................1811.0010100000000
..............................................................................................................................................................................................................................................CACAACTAC---------------------------TACACTTGAGCTACG.............................................................................................................................................................2411.0010100000000
..........................................................................................................................................................................................................................................................................................................AAGAACAAACAG----------------------AT---------------------GCAAA......................................................................................1911.0010000000010
droPer2
TAGACGTAGC-------------CCGCTTCTGTAAAAGCTACTCT--AGTGACTA--ACTAATAGAAGGTACTAGCTGAGACACAGATATCTTGTT--------T-TCTAACTTC------------AAAAGCAAACTAACCACAGGCAA----------------------------ATCAAATAGCAA------ACAAAACACACTAAGCGTAATGTTAAAATCACTCA-ATCCCACACAACTAC---------------------------TACACTTGAGCTACGTTTTAATTAAAGAACAAACAG----------------------AT---------------------GCAAAATACCA-------A---ACGAGAGAA-------------------------------------------TCGAA------AAATAASizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
...............................GTAAAAGCTACTCT--AGTGACT........................................................................................................................................................................................................................................................................................................................................................................................................2112.002200000
.........................................CTCT--AGTGACTA--ACTAATAGAAGGTACT.....................................................................................................................................................................................................................................................................................................................................................................................2812.002200000
............................TCTGTAAAAGCTACTCT--AGTGACT........................................................................................................................................................................................................................................................................................................................................................................................................2411.001000001
.............................................................ATAGAAGGTACTAGCTGAGACACA.........................................................................................................................................................................................................................................................................................................................................................................2411.001100000
................................................GTGACTA--ACTAATAGAAG..........................................................................................................................................................................................................................................................................................................................................................................................1811.001100000
................................................................................................................................................................................................................................................CAACTAC---------------------------TACACTTGAGCT................................................................................................................................................................1911.001001000
.....................................................................................................................................................................................................................................................................................ACTTGAGCTACGTTTTAATTA....................................................................................................................................................2111.001000010
...........................................CT--AGTGACTA--ACTAATAGAAGC.........................................................................................................................................................................................................................................................................................................................................................................................2211.001001000
......................................................................................................................................................................................................AAAACACACTAAGCGTAAT.....................................................................................................................................................................................................................................1911.001010000
..................................AAAGCTACTCT--AGTGACTA--.....................................................................................................................................................................................................................................................................................................................................................................................................1911.001010000
droVir3
TAGCCGTAGCCCGTAGCCGATAGTCGCTTCTGTAAAAGCTAC--T--AGTGACTA--ACTCCTAGAAGGTAGTGG--AAG---CAGATTAATTGTTTTCATTTTT-TTTATT-TCAAGCAAAATATTAACCGTA-ATAAA-----------TTTAGCTGCAA--AAATAGTA--AACCGCAAATTAGTGAACCATTTTCA---ACACTAAGCGTAATGTTTTAA-----AAG--------------------------------------------------------------------------------AAGAAACCCAAAATAA------------ACTAACCGCTAAAAAGAAAAATAATAATAATAAAACAATAGCAAAAATAAGAAGGCATTAAATTCA-----------------------ATTTT------AAATAASizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
............................................................................................................................................................................................GAACCATTTTCA---ACACTAAGCGTAATGT...................................................................................................................................................................................................................................2812.002000000000000000101000000000000000000000000000000000000000000000
.............................................................................................................................................................................................AACCATTTTCA---ACACTAAGCG.........................................................................................................................................................................................................................................2112.002000000000000000100000000000000000000000100000000000000000000000
...........CGTAGCCGATAGTCGCTTCTGTAAAAGC.......................................................................................................................................................................................................................................................................................................................................................................................................................2812.002020000000000000000000000000000000000000000000000000000000000000
.......................................................................GTGG--AAG---CAGATTAATTGTT..............................................................................................................................................................................................................................................................................................................................................................2012.002000000000000020000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................TCA---ACACTAAGCGTAATGTTT.................................................................................................................................................................................................................................2112.002000002000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................TTAGCTGCAA--AAATAGTA--AACCGCAAA.......................................................................................................................................................................................................................................................................2711.001000000000000000000000000000010000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................ATAGCAAAAATAAGAAGGC..................................................1911.001000000000000000000000000000000000000000000000000000000000001000
......................................................................AGTGG--AAG---CAGATTAATTGTT..............................................................................................................................................................................................................................................................................................................................................................2111.001000000000000000001000000000000000000000000000000000000000000000
............................................................CCTAGAAGGTAGTGG--AAG---CAGA.......................................................................................................................................................................................................................................................................................................................................................................2211.001000000000000000000000000000000000000000000000000000000000000010
..............................................................................................................................................................................AACCGCAAATTAGTGAAC..............................................................................................................................................................................................................................................................1811.001000000000000000000000001000000000000000000000000000000000000000
............................................................CCTAGAAGGTAGTGG--AAG---CAGATTAA...................................................................................................................................................................................................................................................................................................................................................................2611.001000000000000000000000000000000000000000000000000000000000000100
..................GATAGTCGCTTCTGTAAAA.........................................................................................................................................................................................................................................................................................................................................................................................................................1911.001000000000000000000000000000000000000010000000000000000000000000
......................................................A--ACTCCTAGAAGGTAGTGG--AAG---CA.........................................................................................................................................................................................................................................................................................................................................................................2411.001000000000100000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................CAAAATAA------------ACTAACCGCTAAAAAGA.........................................................................................2511.001000000000000000000000100000000000000000000000000000000000000000
...............................................................................................................T-TCAAGCAAAATATTAACCGTA-.......................................................................................................................................................................................................................................................................................................................2211.001000000000000000000000000000100000000000000000000000000000000000
..........................................................................................ATTGTTTTCATTTTT-TTTATT-TCAAGCA......................................................................................................................................................................................................................................................................................................................................2811.001001000000000000000000000000000000000000000000000000000000000000
........................CGCTTCTGTAAAAGCTAC--T--AGTGACT........................................................................................................................................................................................................................................................................................................................................................................................................2611.001001000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................TAGTA--AACCGCAAATTAGT..................................................................................................................................................................................................................................................................1911.001001000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................AGTA--AACCGCAAATTAGTGAACCA............................................................................................................................................................................................................................................................2411.001000000000000000001000000000000000000000000000000000000000000000
.......................................................................................................................................ATAAA-----------TTTAGCTGCAA--AAATAGTA--AACC............................................................................................................................................................................................................................................................................2811.001001000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................TAAA-----------TTTAGCTGCAA--AAATAG....................................................................................................................................................................................................................................................................................2111.001000000000000000000000000000000000000000100000000000000000000000
...........................TTCTGTAAAAGCTAC--T--AGTGAC.........................................................................................................................................................................................................................................................................................................................................................................................................2211.001001000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................AATAGCAAAAATAAGAAGGC..................................................2011.001001000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................AAAAATAAGAAGGCATTAAATTCA-----------------------A................2511.001000000000000000000000000000000000000000000000000000000000000010
.........................................................................................................................................................................GTA--AACCGCAAATTAGTGAA...............................................................................................................................................................................................................................................................2011.001000000000000000000000000000100000000000000000000000000000000000
...............................................AGTGACTA--ACTCCTAGAAG..........................................................................................................................................................................................................................................................................................................................................................................................1911.001001000000000000000000000000000000000000000000000000000000000000
...................................................................................................ATTTTT-TTTATT-TCAAGCAAAA...................................................................................................................................................................................................................................................................................................................................2211.001000000000000000000100000000000000000000000000000000000000000000
...................ATAGTCGCTTCTGTAAAAGCTAC--T--...............................................................................................................................................................................................................................................................................................................................................................................................................2411.001000000000000000000010000000000000000000000000000000000000000000
...........................................................................................................................................................................A--AACCGCAAATTAGTGAACC.............................................................................................................................................................................................................................................................2011.001000000000000000000000000000001000000000000000000000000000000000
...............................GTAAAAGCTAC--T--AGTGACTA--A....................................................................................................................................................................................................................................................................................................................................................................................................2111.001000000000000000000000000000000000000000000000000000000000000010
..............................................................................................................................TAACCGTA-ATAAA-----------TTTAGCTGCAA--AA........................................................................................................................................................................................................................................................................................2611.001000000000000000000000000000001000000000000000000000000000000000
......................................................A--ACTCCTAGAAGGTAGTGG--AAG---CAGATT.....................................................................................................................................................................................................................................................................................................................................................................2811.001000100000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................AAAATAA------------ACTAACCGCTAAAAAG..........................................................................................2311.001000100000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................TTTCA---ACACTAAGCGTAATGT...................................................................................................................................................................................................................................2111.001000000000000000000000000000001000000000000000000000000000000000
.............................................................................................................................................................................................................................TAA-----AAG--------------------------------------------------------------------------------AAGAAACCCAAAAT........................................................................................................................2011.001000000000000000000010000000000000000000000000000000000000000000
..................GATAGTCGCTTCTGTAAA..........................................................................................................................................................................................................................................................................................................................................................................................................................1811.001000000000000000000000000000000001000000000000000000000000000000
..........................................................CTCCTAGAAGGTAGTGG--AAG---C..........................................................................................................................................................................................................................................................................................................................................................................2111.001000000000000000100000000000000000000000000000000000000000000000
..........................................................................................................TTTATT-TCAAGCAAAATATTAACCGTA-.......................................................................................................................................................................................................................................................................................................................2711.001001000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................A--AACCGCAAATTAGTGAACCA............................................................................................................................................................................................................................................................2111.001000000000000000000000000000000100000000000000000000000000000000
..............................TGTAAAAGCTAC--T--AGTGACTA--.....................................................................................................................................................................................................................................................................................................................................................................................................2111.001000000000000000000000010000000000000000000000000000000000000000
..................................................................................................................................................................................................TTTTCA---ACACTAAGCGTAATG....................................................................................................................................................................................................................................2111.001000000000000000000000000000000000000000100000000000000000000000
...........................................................................................................TTATT-TCAAGCAAAATATTA..............................................................................................................................................................................................................................................................................................................................2011.001001000000000000000000000000000000000000000000000000000000000000
................................................................GAAGGTAGTGG--AAG---CAGATTAATTGT...............................................................................................................................................................................................................................................................................................................................................................2611.001000000000000000000000000000000000000000000000000000000000000010
...............................................................................G---CAGATTAATTGTTTTCATTTTT-TTT.................................................................................................................................................................................................................................................................................................................................................2611.001001000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................CAATAGCAAAAATAAGAAGGC..................................................2111.001000000000000000000000000000000000000001000000000000000000000000
.......................................................................................................................................................................TAGTA--AACCGCAAATTAGTG.................................................................................................................................................................................................................................................................2011.001000000000000000001000000000000000000000000000000000000000000000
droMoj3
CCGACA---------GCTGATAGCCGCTTCTGTAAAAGCTAC--T--AGTGACTA--ACTCTTAGAAGGTAGTGG--ATG---CAGACCTATTGTTTTCATTTTT-TTTTAT-TCAAGTAAAGGAATAACCGTA-A------AA--ATAAACTTAGCTGCAAAGAAATAGTTAAACCGCAAAACTAGTGAAACGATATCG---ACACTAAGCGTAATGTTAAAA-----------------------------------------------------------------------------------------AAAAACCAGAACGAAC-AGAAAACTAAAATAATCGCTGAA--------AATGA-------A---ATAGTAAAA-------------------------------------------ACATA------AAATAASizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
......................................................A--ACTCTTAGAAGGTAGTGG--ATG---C..........................................................................................................................................................................................................................................................................................................................................................................2312.002100001
......................................................................AGTGG--ATG---CAGACCTATTGT...............................................................................................................................................................................................................................................................................................................................................................2012.002100001
............................................................................................................................................................................................................................................................................................................................AACCAGAACGAAC-AGAAAA..............................................................................................................1921.002200000
.............................................................................................................................................................................................................ACTAAGCGTAATGTTAAAA-----------------------------------------------------------------------------------------AAAAA................................................................................................................................2411.001000001
.........................................................................................................................................................................GTTAAACCGCAAAACTAGTGAAAC.............................................................................................................................................................................................................................................................2411.001100000
.CGACA---------GCTGATAGCCGCTTCTGT.............................................................................................................................................................................................................................................................................................................................................................................................................................2311.001100000
................................................................................................................................................................................................................................................................................................................................................CTAAAATAATCGCTGAA--------AATGA-------A---ATAG.................................................................2711.001000001
..........................................................CTCTTAGAAGGTAGTGG--AT...............................................................................................................................................................................................................................................................................................................................................................................1911.001000001
..................................................................................................................CAAGTAAAGGAATAACCGTA-A------................................................................................................................................................................................................................................................................................................................2111.001000001
....................................................................GTAGTGG--ATG---CAGACCTATTGTTTTCATT........................................................................................................................................................................................................................................................................................................................................................2911.001000001
..............................................................................................................................................................................................AACGATATCG---ACACTAAGC..........................................................................................................................................................................................................................................1911.001100000
.............................................................................................................................................................................AACCGCAAAACTAGTGAAACGATATCG---A..................................................................................................................................................................................................................................................2811.001100000
................................................................................................................................................................AAAGAAATAGTTAAACCGCAA.........................................................................................................................................................................................................................................................................2111.001100000
...................................................................................................................AAGTAAAGGAATAACCGTA-A------A...............................................................................................................................................................................................................................................................................................................2111.001100000
........................................................................................................T-TTTTAT-TCAAGTAAAGGA.................................................................................................................................................................................................................................................................................................................................1911.001000001
................................................................................................................................ACCGTA-A------AA--ATAAACTTAGCTGC..............................................................................................................................................................................................................................................................................................2311.001100000
...................................................................................................................................................................................................TATCG---ACACTAAGCGTAATGT...................................................................................................................................................................................................................................2111.001000001
.............................................................................................................................................................................................AAACGATATCG---ACACTAAGCG.........................................................................................................................................................................................................................................2111.001000001
......................................................................AGTGG--ATG---CAGACCTATTGTTTT............................................................................................................................................................................................................................................................................................................................................................2311.001100000
.................................................................................................................................................................................GCAAAACTAGTGAAACGATATCG---...................................................................................................................................................................................................................................................2311.001000001
...............................................................................................................................AACCGTA-A------AA--ATAAACTTAGCTGCAAA...........................................................................................................................................................................................................................................................................................2711.001100000
..........................................................................................................................................................AGCTGCAAAGAAATAGTTAAACCGC...........................................................................................................................................................................................................................................................................2511.001100000
.................................................................................................................................................................................................GATATCG---ACACTAAGCGTAAT.....................................................................................................................................................................................................................................2111.001100000
.................................................................................................................................................................................GCAAAACTAGTGAAACGATATCG---ACA................................................................................................................................................................................................................................................2611.001100000
............................................................................................................................AATAACCGTA-A------AA--ATAAAC......................................................................................................................................................................................................................................................................................................1911.001100000
......................................................A--ACTCTTAGAAGGTAGTGG--ATG---CAGACCT....................................................................................................................................................................................................................................................................................................................................................................2911.001000001
.........................................................................................................................................................................GTTAAACCGCAAAACTAGTGAAACGAT..........................................................................................................................................................................................................................................................2711.001100000
.................................................................................................................................................................................................................................................................................................................................GAACGAAC-AGAAAACTAAAAT.......................................................................................................2111.001100000
droGri2
TAGCCGTAGCCGATAGCCGATAGCCGCTTCTGTAAAAGCTAC--T--AGTGACTA--ACTCTTAGAAGGTAGTGG--TAG---CAGATTTATTGTTTCCATAT-T-TTTATT-TCCAGCAGAATAATAACCGTA-A-----------TAAACTTAGCGGCGA--TACTAGTA-AACCAC--AATTACTGAACACATTTCA---GCACTAAGCATAATGTTAACA--------AA--CAAACAAG--CATGAAAACA-AACTTT-----------AT--GTTC-GCTGAG----------------------------------AAAGT--C----------------------------------------------------AAA----------------TCCAATAGAAAAATTAAAAAAAAAAAAAATAAAAAAAACTTTAASizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
............ATAGCCGATAGCCGCTTCTG..............................................................................................................................................................................................................................................................................................................................................................................................................................2011.00110
...........GATAGCCGATAGCCGCTTCTG..............................................................................................................................................................................................................................................................................................................................................................................................................................2111.00110
..............................................................TAGAAGGTAGTGG--TAG---CAGATTTAT..................................................................................................................................................................................................................................................................................................................................................................2511.00101
...........................................................................................................................................................................................................GCACTAAGCATAATGTTAACA--------AA--CA................................................................................................................................................................................................................2511.00110
.....................................................................................................................................................AACTTAGCGGCGA--TACTAGT...................................................................................................................................................................................................................................................................................2011.00110

Generated: 05/18/2015 at 10:56 AM