ID:

dsi_13100

Coordinate:

3l:16392801-16392964 +

Confidence:

Candidate

Type:

Unknown

[View on UCSC Genome Browser {Cornell Mirror}]

Legend:

mature

star

mismatch in read

Predicted structure

Flybase annnotation

intergenic

No Repeatable elements found

Sense Strand Reads

GATATCACCGACGAAGAGGCAGCGGCCATTATCAAGGAGGAGGAGAACAAGTATGTGCGAGCGTTAAGAGATCATTTACTAAAATACCCTGGTGACTCAGCGAAAGCTGTGAAATTCCTGCAAAAAGCCAAATTAGCATTCTTTTTCAATTCTTATCCTAAATATGTTGTATCATTAGCATTCGCACATCTTATAAAGTCTAAATCCTCTACAGAAAACGCCAGCAGCTGCTGGATAGCGCTGGTGGAGAGCCATCTGCCTCGA ************************************************..(((((((((.(((((..(((((.((((((........))))))..((((....))))(((((....(((..............))).....)))))...................)).))).))))).))))))))).........................************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	SRR618934 dsim w501 ovaries	O001 Testis	SRR553486 Makindu_3 day-old ovaries	SRR902009 testis	SRR553485 Chicharo_3 day-old ovaries	SRR553488 RT_0-2 hours eggs	M024 male body	SRR553487 NRT_0-2 hours eggs
..............AGAGGCAGCGGCCATTATCAAGGAGGA...............................................................................................................................................................................................................................	27	0	1	2.00	2	0	0	1	0	1	0	0	0
.......................................................................................................AAGCTGTGAAATTGCTGCAA.............................................................................................................................................	20	1	1	1.00	1	0	0	0	1	0	0	0	0
..........................................................................................................................................................................................................................................ATAGCGCTGGTGGAGAGC............	18	0	1	1.00	1	0	1	0	0	0	0	0	0
................................................................................................................................................................................................................................................CTGGTGGAGAGCCATCTGCCT...	21	0	1	1.00	1	1	0	0	0	0	0	0	0
..........ACGAAGAGGCAGCGGCCAT...........................................................................................................................................................................................................................................	19	0	1	1.00	1	1	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................ACGCTACCATCTGCTGGATA...........................	20	3	6	0.50	3	0	0	2	0	0	0	0	1
.............................CATCAAGGAGGAGGAGAAC........................................................................................................................................................................................................................	19	1	3	0.33	1	0	0	0	0	0	1	0	0
.....................................................................GGTCATCTACTACAATACCC...............................................................................................................................................................................	20	3	3	0.33	1	0	1	0	0	0	0	0	0
.................................................................................................................................................................................................TAAAGTCTTAATCCTCTG.....................................................	18	2	7	0.29	2	0	0	0	0	0	0	2	0
.............................TAACACGGAGGAGGAGAAAAA......................................................................................................................................................................................................................	21	3	7	0.29	2	0	0	0	2	0	0	0	0
.............AAGAGGTAGCGGCCA............................................................................................................................................................................................................................................	15	1	8	0.25	2	2	0	0	0	0	0	0	0

Anti-sense strand reads

CTATAGTGGCTGCTTCTCCGTCGCCGGTAATAGTTCCTCCTCCTCTTGTTCATACACGCTCGCAATTCTCTAGTAAATGATTTTATGGGACCACTGAGTCGCTTTCGACACTTTAAGGACGTTTTTCGGTTTAATCGTAAGAAAAAGTTAAGAATAGGATTTATACAACATAGTAATCGTAAGCGTGTAGAATATTTCAGATTTAGGAGATGTCTTTTGCGGTCGTCGACGACCTATCGCGACCACCTCTCGGTAGACGGAGCT ************************************************..(((((((((.(((((..(((((.((((((........))))))..((((....))))(((((....(((..............))).....)))))...................)).))).))))).))))))))).........................************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	SRR618934 dsim w501 ovaries	M024 male body	M023 head	M053 female body	GSM343915 embryo
................................................................................................................................................................................TCGTAAGCGTGAAGA.........................................................................	15	1	11	2.82	31	31	0	0	0	0
...............................................................................................................................................................................................TAATTTCAGAATTAGGAGA......................................................	19	3	20	0.40	8	0	5	3	0	0
..............................................................CAATTCTGTAGTAGGTGATT......................................................................................................................................................................................	20	3	8	0.13	1	1	0	0	0	0
...............................................CTTCATACAGGCTCGTAAT......................................................................................................................................................................................................	19	3	9	0.11	1	1	0	0	0	0
................................................................................................................................................................................................AATTTCAGAATTAGGAGA......................................................	18	2	10	0.10	1	0	1	0	0	0
.......................................................................................................................................CGTAAGAAAAGGTTTAGA...............................................................................................................	18	2	17	0.06	1	0	0	0	1	0
...................................CCTACTCCTCTTTTTCAGA..................................................................................................................................................................................................................	19	3	20	0.05	1	0	0	0	0	1

Generated: 04/24/2015 at 04:39 AM