ID:

dsi_13086

 Coordinate:

3r:7047657-7047955 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-47.5 -47.4 -47.4

Flybase annnotation

intergenic

No Repeatable elements found

Sense Strand Reads

TTGGGCAACAATTAATTTATTTAGCTGACTTTCAAATCTGACACGTGAAGGTAAATAAATTTGAATATAAATGTAACTCTATGGATCAGCGCTTTCTGTTAATTATTTATAAGGGTTGATTATCATGTATAACCCTTTGAAACGGAAGTATTATACTTTCTCAACACTGTGTATTTGAACAGCTGTTTGGCCCGTAGTTGTAGGTACTATTTTTGAAAACACCATTCGAGGTTCCGAGACAAACAAATCAGGCACCGTTTTATTGGATCCCAATCGAACAGCTGACATACCTTCGGGCCCGTTAGTTTTCCCGATCGCCCTGCATATGATACCATATCTCCCATTACAGCGCTGCAGTCCAATCAAACCGGTTTGTCGCCTTTCGACTTTTCGGTGGTC
***********************************************************.................(((...((((((((.(((................))).))))))..(((.(((((.....((((...(((((((...))))))))))).....))))).))).(((((((((((...(((((.......)))))..(((((.......)))))((.(((((...((((............))))..))))).))...))))))))))).....))...)))..**************************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR902009
testis
 SRR618934
dsim w501 ovaries
 SRR553488
RT_0-2 hours eggs
 M023
head
 O001
Testis
 SRR902008
ovaries
 SRR553487
NRT_0-2 hours eggs
...........................................................TTTGAATATAAATGTAACTCTA.............................................................................................................................................................................................................................................................................................................................. 22 0 1 1.00 1 0 0 0 0 1 0 0
.................................AAATCTGACACGTGAAGGTAA......................................................................................................................................................................................................................................................................................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0
.....................................................................................................................................................................................................................................................................................................................................................................................TGTCGCCTTTCGACTTTTCGGT.... 22 0 1 1.00 1 0 0 1 0 0 0 0
..............................TTCAAATCTGACACGTGAAG............................................................................................................................................................................................................................................................................................................................................................. 20 0 1 1.00 1 1 0 0 0 0 0 0
.........................................................................................................................................................................................................................................................................................CTGACATACCTTCGGGCC.................................................................................................... 18 0 1 1.00 1 0 0 0 1 0 0 0
..........................................................................................................................................................................................TTGGCCCGTAGTTGTAGGTAC................................................................................................................................................................................................ 21 0 1 1.00 1 1 0 0 0 0 0 0
.........................................................................................................................................................................................................................................................................................................................................................ACAGCGCTGCAGTCCAATCAAACCGGTT.......................... 28 0 1 1.00 1 0 0 0 0 0 1 0
................................................................ATATAAATGTAACTCTATGGAT......................................................................................................................................................................................................................................................................................................................... 22 0 1 1.00 1 1 0 0 0 0 0 0
.........................................................................................................................................................................................................AGGTACGATTTTTGAAAAAA.................................................................................................................................................................................. 20 2 2 0.50 1 1 0 0 0 0 0 0
..............................................................................................................................................................................................................................................................................................ATACCTTCGGGACCG.................................................................................................. 15 1 5 0.40 2 0 2 0 0 0 0 0
..............................................................................................................................................................ACTCAACAGTGTGTCTTTGA............................................................................................................................................................................................................................. 20 3 6 0.33 2 0 0 0 0 0 0 2
..............................................................................................................................................................................................................................................................................................ATACCTTCGGACCCG.................................................................................................. 15 1 5 0.20 1 0 1 0 0 0 0 0
..............................................................................................................................................................................................................................................................................................ATACCTTCGGGACCCTCA............................................................................................... 18 3 20 0.15 3 0 3 0 0 0 0 0
.................................................................................................................................................................................................................................TCGAGGTTCCGATAC............................................................................................................................................................... 15 1 7 0.14 1 0 1 0 0 0 0 0
..............................................................................................................................................................................................................................................................................................ATACCTTCGGGACCGTC................................................................................................ 17 2 8 0.13 1 0 1 0 0 0 0 0
..............................................................................................................................................................................................................................................................................................ATACCTTCGGACCCGTA................................................................................................ 17 2 9 0.11 1 0 1 0 0 0 0 0
..........................................................................................................................................AAATCGGAACTATTATACTTT................................................................................................................................................................................................................................................ 21 3 9 0.11 1 0 0 0 0 0 0 1
...............................................................................................................................................................................................................................................................................................TACCTTCGGGCCCGGA................................................................................................ 16 2 13 0.08 1 0 1 0 0 0 0 0
..............................................................................................................................................................................................................................................................................................ATACCTTCGTACCCGT................................................................................................. 16 2 17 0.06 1 0 1 0 0 0 0 0
.............AATGTATTTAGCTGACC................................................................................................................................................................................................................................................................................................................................................................................. 17 2 20 0.05 1 0 0 0 0 0 0 1
...............................................................................................................................................................................................................................ATTCGAGGTTACGCGA................................................................................................................................................................ 16 2 20 0.05 1 0 0 1 0 0 0 0
.................................................GCAAAATAAATTTGAATAT........................................................................................................................................................................................................................................................................................................................................... 19 2 20 0.05 1 0 1 0 0 0 0 0
.................................................................................................................................................................................................................................................................................................CCTTCGGGGCCGTTTTTTTT.......................................................................................... 20 3 20 0.05 1 0 0 1 0 0 0 0

Anti-sense strand reads

AACCCGTTGTTAATTAAATAAATCGACTGAAAGTTTAGACTGTGCACTTCCATTTATTTAAACTTATATTTACATTGAGATACCTAGTCGCGAAAGACAATTAATAAATATTCCCAACTAATAGTACATATTGGGAAACTTTGCCTTCATAATATGAAAGAGTTGTGACACATAAACTTGTCGACAAACCGGGCATCAACATCCATGATAAAAACTTTTGTGGTAAGCTCCAAGGCTCTGTTTGTTTAGTCCGTGGCAAAATAACCTAGGGTTAGCTTGTCGACTGTATGGAAGCCCGGGCAATCAAAAGGGCTAGCGGGACGTATACTATGGTATAGAGGGTAATGTCGCGACGTCAGGTTAGTTTGGCCAAACAGCGGAAAGCTGAAAAGCCACCAG
****************************************************************************************************.................(((...((((((((.(((................))).))))))..(((.(((((.....((((...(((((((...))))))))))).....))))).))).(((((((((((...(((((.......)))))..(((((.......)))))((.(((((...((((............))))..))))).))...))))))))))).....))...)))..*********************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR902009
testis
 SRR553487
NRT_0-2 hours eggs
 SRR618934
dsim w501 ovaries
 SRR553486
Makindu_3 day-old ovaries
 M024
male body		 O001
Testis
 SRR553488
RT_0-2 hours eggs
 SRR553485
Chicharo_3 day-old ovaries
 GSM343915
embryo
................................................................................TTCCTAGTCGCGAAAGACAA........................................................................................................................................................................................................................................................................................................... 20 1 1 2.00 2 2 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................................................................................AAATTACCTAGGGTTAGC........................................................................................................................... 18 1 1 2.00 2 0 2 0 0 0 0 0 0 0
.........................................................................................................................................................................................................................................................................................................................TAGGGGGACGTATACTAGTGT................................................................. 21 3 2 1.00 2 0 0 0 2 0 0 0 0 0
.........................................................................................................AAATATTCCCAACTAATA.................................................................................................................................................................................................................................................................................... 18 0 1 1.00 1 0 0 0 0 0 1 0 0 0
...........................................................................................................................................................................................................................................................................TGGGTTAGCTTGTCGACTGTAT.............................................................................................................. 22 1 1 1.00 1 1 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................................................................................................................GCCCGGGCTATAAAAAGG........................................................................................ 18 2 2 1.00 2 0 0 0 0 2 0 0 0 0
.........................................................................................................................................................................................................................................................................................................................................................................TAGTTTGGCCAAACAGCGGAA................. 21 0 1 1.00 1 0 0 1 0 0 0 0 0 0
......................................................................................................................................................................................................................................................TAGTCCGTGGCAAAATAACCT.................................................................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................................................................................TAGGGTTAGCTTGTCGACTGT................................................................................................................ 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0
................................................................................................................................................................................................................................................................AAAAATTACCTAGGGTTAGC........................................................................................................................... 20 2 2 0.50 1 0 1 0 0 0 0 0 0 0
.......................................................................................................................................................................................................................................................................................................................................................AATGTTGCGACGTCAGGGT..................................... 19 2 2 0.50 1 0 0 1 0 0 0 0 0 0
.....................................................................................................................................GGAAACTTTGCCTTGA.......................................................................................................................................................................................................................................................... 16 1 6 0.50 3 0 0 0 2 0 0 1 0 0
..........................................................................................................................................................................................................................................................................................................................AGGGGGACGTATACTAGTGTA................................................................ 21 3 3 0.33 1 0 0 0 1 0 0 0 0 0
................................................................................................................................................................................................................................................................................TAGCTTGTCGACTGGA............................................................................................................... 16 1 3 0.33 1 0 0 0 0 0 0 1 0 0
.............................................................................................................................................................................................................................................................................................................................................................GCGACGTCAGGTTCGT.................................. 16 1 4 0.25 1 0 0 1 0 0 0 0 0 0
...............AGATAAATCGACTTAAAGT............................................................................................................................................................................................................................................................................................................................................................................. 19 2 8 0.25 2 0 0 0 0 0 0 0 2 0
...................................................................................................................................................................................................................................................................................................................................................................TGAGGTTAGTTTGTCCAA.......................... 18 2 10 0.20 2 0 0 2 0 0 0 0 0 0
......................................................................................................................................GAAACTTTGCCTTGA.......................................................................................................................................................................................................................................................... 15 1 17 0.18 3 0 1 0 2 0 0 0 0 0
....................................................................................TAGTGGCGAAAGACA............................................................................................................................................................................................................................................................................................................ 15 1 18 0.17 3 0 0 3 0 0 0 0 0 0
...........................................................................................................................................................................................................................................................................................................................................................TCGCGCCGTCAGGTTCGT.................................. 18 2 6 0.17 1 0 0 1 0 0 0 0 0 0
...............................................................................................................................................................................................................................................................................................................TCAAGAGGGCTAGCGGAA.............................................................................. 18 2 6 0.17 1 0 1 0 0 0 0 0 0 0
............................................................................................................................................................................................................................................................................................................................................TTGTAGAGGGTAATGTCGCGC.............................................. 21 3 18 0.11 2 2 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................................................................................................................................................................CGCGACATCAGGTTCGT.................................. 17 2 11 0.09 1 0 0 1 0 0 0 0 0 0
......................................................................................................................................................................................................................................................................................................CCTGGACATTCAAAAGGGC...................................................................................... 19 3 13 0.08 1 0 0 0 0 0 0 0 0 1
...........................................................................................................................................................................................................................................................................................................................................................TCACGACGTCAGGTTCGT.................................. 18 2 14 0.07 1 0 0 1 0 0 0 0 0 0
.....................ATCCACTGAAAGTTTACA........................................................................................................................................................................................................................................................................................................................................................................ 18 2 14 0.07 1 0 0 1 0 0 0 0 0 0
.....................................................................................................................................................................................................................................................................................AGTAGATTGTATGGAAGCC....................................................................................................... 19 3 15 0.07 1 0 0 0 0 0 0 1 0 0
.............................................................................AGAGACCTAGTTGCGAA................................................................................................................................................................................................................................................................................................................. 17 2 15 0.07 1 0 0 0 0 0 0 0 1 0
............................................................................................................................................................................................................................................TCTGGTTGTTTAGTCCACG................................................................................................................................................ 19 3 20 0.05 1 0 0 0 0 1 0 0 0 0
...................................TAGCCTGAGCACTGCCAT.......................................................................................................................................................................................................................................................................................................................................................... 18 3 20 0.05 1 0 0 0 0 0 0 1 0 0
.....................................................................................................................................................................................................................................................TTAGTCCTTGGCTAAAT......................................................................................................................................... 17 2 20 0.05 1 0 0 1 0 0 0 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim2 3r:7047607-7048005 - dsi_13086 TTGGGCAACAATTAATTT--ATTTAGCT---GACTTTCAAATCTGACACGTGAA---------G----------------------GTA-AATAAATTTGAAT--ATA--AATGTAAC-TCTATG---GATCAGCGCTTTCTGTTAATTATT-TATAAGGGTTGATTATCATG--TATAACCCTTTGAAACGG-----------------------A--------------------------------AGTATTATACTTTCTCAACACTGTGTATTTG-AACAGCTGTT-----TGGCCCGT-AGTTGTAGG-TACTATTTTTGAAAACACCA---------------------T------------TCGAGGTTC---CGAGACAAACAAA-TCAGGCACCGTTTTA-TTGGA-TCCCAATCGAACAGCTGA---CATACCTTCGG---GCCCGTTAGT--------TTTCC-CGATCGCCCTGCATATGATA------------------------------CCATATCTCCCATTACAGCGC------TGCAG-TCCAATCAAACCGGTTT------GTCGCCTTTCGACTTTTCGGTG----------GTC
droSec2 scaffold_5:5665949-5666347 - TTGAGCAACGATTAATTT--ATTTAGCT---GACTTTCAAATCTGACACGTGAA---------G----------------------GTA-AATAAATTTGAAT--ATA--AATGTAAA-TCTATG---GATCAACGATTTCTGGTAATTATT-TATAAGGGTTGATTATCATG--TATAACCCTTTGAAACGG-----------------------A--------------------------------AGTATTATACTTTATCAACACTGTGTATTTG-AACAGCTGTT-----TGGCCCGT-AGTTGTAGG-TACTATTTTTGAAAACACCA---------------------T------------TGGAGGTTC---CGAGACAAACAAA-TCAGGCACCGTTTTA-TTGGA-TCCCAATCGAACAGCTGA---CTTACCTTTCG---GCCCGTTAGT--------TTTCC-CGATCGCCCTGCATATGATA------------------------------CCATATCTCCCATTACAGCGC------TGCAG-TCCAATCAAACCGGTTT------GTCGCCTTTCGACTTTTCGGTG----------GTC
dm3 chr3R:14228739-14229139 + TTGAGAAACAATTAGTTA--ATTTTGCT---GACTTTCAAATCTGACACGTGAA---------G----------------------GTA-AATAAATTCAAAT--AGA--AATGTAA---CTATG---GATCAGCGCTTTCCTGTAATTATT-TATTAGGGTTGATTATCTTG--TATAACCCTTTGAAACGG-----------------------A--------------------------------AGCATTATCCTTAATCAACACTGTGTACTTG-AACAGCTGTT-----TGGCCCGT-AGTTGTAGG-TACTATTTTTGAAAACACCA---------------------T------------TGGGAGTTCCCACAAGACAAACAAATCCGTGCACCGTTGTA-TTGGA-TTCCAATCGAACAGCTGA---CATACCTTCGG---GCCCGTTAGT--------TTTCC-CGATCGCCCTGCATATGATA------------------------------CCATATCTCCCATTACAGCGC------TGCAG-CCCAATCAAACCGGTTT------GTCGCCTTTCGACTTTTCGGTG----------GTC
droEre2 scaffold_4770:7415087-7415492 - TTGAGCAACAATTGATTTTTTTTTTGCA---GACTTTCAAATTTGACACGTGAA---------G----------------------GTA-AATAAGTTTAAAC--ATA--GATTTAAA-TTTATGGAGGATCAGCGTTTATTGGTTATAATAATATAAGGGTTGATTATCTTG-TTATAACCCTTTAGAACCG-----------------------A--------------------------------AGTATTATCCCTTATCAACACTGTGTATTTG-AACAGCTGTT------GAAATGT-GGTTGTAGG-TACTATTTTTGAAAAGACAA---------------------T------------T-GGGGTTT---CGAGACAAACAAT-TCGGGCACCCTTTTAGTTGGA-TCCCATTCGAACAGCTGA---CAGACCTTCGG---GCCCGTTAGA--------TTTCCTCGATCGCCCTGCATATGATA------------------------------TCTTATCTCCCATTACAGCGC------TGCAG-TCCAATCAAACCGGTTT------GTCGCCTCTCGACTTTTCGGTG----------GTC
droYak3 3R:2858309-2858700 + CTGAGCAACGATTACTTT--ATTT-------------CGAATCTGACACGTGAA---------G----------------------GTA-AATAAGTTTAAAT--ATA--GATTTAAA-TTTATG---GATCGGCGCTTATTCACAATAATG-TATACGGGTTGATTATCCGG-TTATAACCCTTTAAAACCA-----------------------A--------------------------------AGTAATATCCCTTATCAACACTGTGTATTTG-AACAGCTGTT-----TGGCCTGTTAATTCTATG-TACTATTTTTGAAACGACAA---------------------T------------T-GGGGTTT---CGAGACCAACAAC-TTGGACACCCTTTTAGTTTGA-TCCCCATCGAACAGCTGA---CAGACCTTCGG---ACCCGTTAGA--------TTTCCCCGATCGCCCTGCATATGATA------------------------------TCATATCTCCCATTACAGCGC------TGCAG-TTCAATCAAACCGGTTT------GTCGCCTTTCGACTTTTCGGTG----------GTC
droEug1 scf7180000409802:1815727-1816118 - TTGTTTAACTATTAATAA--AGTTCAGTGGCGGCTTTTT------ATTGGCATA---------G----------------------GGA-AATCAATTAAAATTT--ATTATATTGCCATT-TTT---TATCAGTAAATAATGCCAACCTTT-TATAAAG------------------AAAGCC-----------------------------------------------------TATAGAAAGCAGTATATTGACCCTTATCAACACTGTCTATGCT-AACAGCTGTT-----TGACCTGTTAGTTGTAGG-TACTATTTTTGAAAAAACATT---GGAGTGGGA--------CT-----------T-GGGGTTT---CGAGTCAAACAAACTTGGCAACCATTTTAATTGGA-TCCCAATCGAACAGCTGA---CGCAGGGCCAA---CTCCGTTAGT--------TTTCC-CGATCGCGTTGCAT-----------------------------------ATCATAACTCCCATTACAACGC------TGCAG-TTGAATCAAACCGGTTT------GTCGCCTCTCGATTTTTCGGTG----------GTT
droBia1 scf7180000299102:1729501-1729933 - TTGAGCAACGACTTGTGC--ATTTCGTA---GACGGATAAATTTGACACGTTAA---------G----------------------GTA-AATAAGTTCAAATTC--AGCAGGTTAACATTTTTA---GTTCAACACACGTTGGCAATCATT-TTTAGGCCTGCATT-TATTGCACAAAAAGCT-----------------------------------------------------CATCGCGGGTAGCGAACTGCAGCTTATCAACACTGTCTGGGCT-AACAGCTGTTTC--TTGGCCTGTTATTTGTAGG-TACTATTTTTGAAAAGAGCC-TGTGGAGTGGGAGTCCGAGAT------------T-GGGGCTG---CGCGACCAACAAC-CTGGCCACCATTTTAATTGAA-CCCCAATCGAACAGCTGA---CGTACCGCAGG---CCCCGTTAGTTAGTTAGTTTTCCCCGATCGCGTTGCAC-----------------------------------ATCACATCTCCCATTACAGCGC------TGCAG-TCCAAGCAAACCGGTTT------GTCGCCTCTCGATTTTTCGGCG----------GTC
droTak1 scf7180000415878:603581-603994 - TTGGACAACAACTAATTT--AGTTTGTA---GACTAGAAAATTTGACACGCTCA---------G----------------------GTA-AATAAATTTAAATCT--ATTTA--------TTTTA---GATCAAAACACGTTGGCAATAATT-TATAGGGGTGGATTTTAATGTTTATAAAGCT-----------------------------------------------------TACCGTGAGTGGGGAATCGCACCTTATCAACACTGCCTAGTCT-GACAGCTGTTTCGTTTGGCCTGCTACTTGTAGG-TACTATT-TTGAAAAGACATT---GGAGTGGGA--------T------------T-GGGGTTC---CGAGACCCACAAACCTGGCCACCATTTTAATTGAA-TCCCAATCGAACAGCTGA---CGTACCGCAGG---CCCCGTTAGT--------TTTCC-CGATCGCGTTGCAT-----------------------------------ATCATATCTCCCATTACAGCGC------TGCAG-TCGCAACAAACCGGTTTGTC-TTGTCACCTCTCGATTTTTCGGTG----------GTC
droEle1 scf7180000491008:2019601-2020003 - TTGAGCAACGATTTCTTT--AATGTGTA---GAATGCTATATTTGACACGCTCA---------G----------------------GTA-TAAATATTTAAAATT--ATTTAATTATCTTTTCTA---GACCAGTGCAAGTTGGCAACAATT-AAAAAGGTTAGATTG-ATTGTTTATAAAGCT-----------------------------------------------------AGTCGTGAG-------CAGCTGCTTATCAACACTGTCTAGGTC-AACAGCTGAT-----TCGCCTATTATTCGAAGGGCTCTAT-TTTGAAAAGACAATTGGGGAGTGGGT--------C------------T-GGCACTT---TAAAACAAACAAAGCTGGCCACCATTTTAATTGGA-TCCCAATCGAACAGCTGA---CGTACGGCCAT---CCCCGTTAGT--------TTTCC-CAATCTCGTTGCAT-----------------------------------A-----TCTGTCATTACAACGC------TGCAG-TTGAATCAAACCGGTTT------GTCGCCTCTCGATTTTTCGGTG----------GTT
droRho1 scf7180000780017:29570-29961 + TTAGGCAGCGACTATTTT--TGTGTGGA---GA-------GTTTGACACACTTG---------G----------------------TT--TAAAAATTTTAATGTATA--AAGTTAAT-TTTTTA---GATTAACGACAGTTAGAAACATTT-AAAGAAAGTGG-CTA-ATTGATTGTAACGAT-----------------------------------------------------TACCGTGAG-------CAACAGTTAATCAACACTGTCTAGGTC-AACAGCTGTT-----CCA-CTGTTAATAGTAGG-TACAATTTTTGAAAAGCCAGTTGAGGAGGGGGT--------T------------C-GGGGTCT---TAAAACAATCAAACCTGGCCACCATTTTATTTGGA-TCCCAGTCCAACAGCTGA---CGTACCGCCGA---CCCCGTTAGT--------TTTCC-CAATCGCATTGCAT-----------------------------------A-----TCTTTCATTACAACGC------TGCAG-TCGAATCAAACCGGTTT------GTCGCCTCTCGATTTTTCGGTG----------GTT
droFic1 scf7180000453800:705924-706338 + CTGTGCAACGAATATTTT--C---TGCA---GA-------GATTGTAAAGCTTTGCTTACTCAGTTACGTAAATACTCAGTTAAATGTA-AATAAATCTAA--------------------------------------------------------------------------TAAAACCCTTAATAAAGAGTACTTAAATTAGTCAAAGGCGGAAAAATGTATTATTACATGTCTTCTGGTAACA-GTTGTTGCACCTTATCAACACTGTATAGGCC-AACAGCTGTT-----TTGTCTGTTGTTTGCAGG-TACTATTTTTGAATTGACACTTGAGGAGTGAGA--------C------------T-GGGGTCT---TTTAACAAACAAA-CCGTCCACCATTTTAATTGGA-TCCCAATCGAACAGCTGA---CGTGCCGCCGG---CCCCGTTAGT--------TTTCC-TGATCGCGTTGCAT-----------------------------------A-----TTTTTCCTTACGCTGC------TGCAG-TCGAATTAAACCGGTTT------GTCGCCTCTCGATATTTCGGTA----------GTT
droKik1 scf7180000302392:185054-185282 + TACA-------T-----------------------------------------------------------------------------------------------------------------------------TT-----------------------------TCTT--------------------------------------------------------------------------------------GTTGTCCAACACTGCCTAAGCAAAACAGCTGTT-----GAGCCGGTT---TGT--C-AACTATTTTTGAA----------------------------CTGGGGAAAATGGAT-A-ATTT---TG-----AAC------AACCACCATTTTAAGTGAAATCG-----AAACAGCTGTAGTCGCCTCGCCGGTCGCCCCGTTAGT--------TTTCC-CGTTCCGATTGCAC-----------------------------------CTC---------------GTCT------TGCAG-TC----CGAACCGGTTT-----------CTCTCGATTTTTCGGTGAGTCTCCTCCGTC
droAna3 scaffold_13340:9875313-9875509 - A-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T------------T-GGAGTTTT--C----CAAACAAAGTTGGCCACCATTTTTGT-GAAATCC-----TATCAGCTGA---CGTTTAGCCGGTCACTCCGTTAGT--------TTTCC-TGAGCGCATCAGGT--AACAATCTCACTCTCAATATCGTTGCACTGCATA-----GTGT-C--TGCACCGCTCGTTTTTCAA-CTTCGTCGAACCGGTTTA-----GTGGAGTCTCGACTTTTCTGTG----------G--
droBip1 scf7180000396691:2575868-2576205 - TTGTTTTA-------------TTT--------------------TACATTTTTA---------A----------------TTAAATTTACCATAAGTTTAA--------TTAATGACCTTATAT-----ACTGACG---------------AATATAATGGTTTTTTAT-------------------------------------------------------------------------------------TTATGTTAGCCAACACTGCATAGAC----CAGATGAT-----T--------------------------TCAAAGGGAAATATGGGTCGCCGAA--------T------------T-GGAGTTTT--C----CAAACAAAGTTGGCCACCATTTTTGT-GAAATCT-----TATCAGTTGA---GGTTTAGCCGGTTACTCCGTTAGT--------TTTCC-TGAGCGCA--GCAAGTAACAATCTGACTCCCAAAAGCGTATTATTGCATA-----TTGT-C--TGCACCGCTCGTTTTTCAA-CTTCGTCGAACCGGTTTA-----GAGGAGTCTCGACTTTTCGGTG----------G--
dp5 2:11975809-11975991 - CGTA-------C-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTGTGTG-T-TTGTTGTTTAAAATAT-G---------------------T------------ACGAGGTTT---T------AACGATCTCGACCACCATTTTACTTGACAC----AT-CAACAGCTGT------GCAATAGT--ACGCCGTTAGC--------TTTCC-TGGGCCCCTTTCGA--------------------------------------------------GCAGCAT------TGCGCATACCATTGAACCGGTTTTCCACTGCCGCTTCTTGATTTTTCGGCGT---------GCT
droPer2 scaffold_0:8529515-8529697 + CGTA-------C-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTGTGTG-T-TTGTTGTTTAAAATAT-G---------------------T------------ACGAGGTTT---T------AACGATCTCGACCACCATTTTACTTGACAC----AT-CAACAGCTGT------GCAATAGT--ACGCCGTTAGC--------TTTCC-TGGGCCCCTTTCGA--------------------------------------------------GCAGCAT------TGCGCATACCATTGAACCGGTTTTCCACTGCCGCTTCTCGATTTTTCGGCGT---------GTT

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
TTGGGCAACAATTAATTT--ATTTAGCT---GACTTTCAAATCTGACACGTGAA---------G----------------------GTA-AATAAATTTGAAT--ATA--AATGTAAC-TCTATG---GATCAGCGCTTTCTGTTAATTATT-TATAAGGGTTGATTATCATG--TATAACCCTTTGAAACGG-----------------------A--------------------------------AGTATTATACTTTCTCAACACTGTGTATTTG-AACAGCTGTT-----TGGCCCGT-AGTTGTAGG-TACTATTTTTGAAAACACCA---------------------T------------TCGAGGTTC---CGAGACAAACAAA-TCAGGCACCGTTTTA-TTGGA-TCCCAATCGAACAGCTGA---CATACCTTCGG---GCCCGTTAGT--------TTTCC-CGATCGCCCTGCATATGATA------------------------------CCATATCTCCCATTACAGCGC------TGCAG-TCCAATCAAACCGGTTT------GTCGCCTTTCGACTTTTCGGTG----------GTCSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
................................................................................................TTTGAAT--ATA--AATGTAAC-TCTA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.00100001000000000000
......................................AAATCTGACACGTGAA---------G----------------------GTA-A..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100000000000001000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T------GTCGCCTTTCGACTTTTCGGT..............2211.00100000000010000000
...................................TTCAAATCTGACACGTGAA---------G----------------------...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00100000000000001000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................CTGA---CATACCTTCGG---GCC..................................................................................................................................................................1811.00110000000000000000
..................................................................................................................................................................................................................................................................................................T-----TGGCCCGT-AGTTGTAGG-TAC...........................................................................................................................................................................................................................................................................................................2111.00100000000000001000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAGCGC------TGCAG-TCCAATCAAACCGGTT..........................................2811.00100000000000010000
.....................................................................................................AT--ATA--AATGTAAC-TCTATG---GAT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.00100000000000001000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................TACCTTCGG---GCCCGGA..............................................................................................................................................................16130.08100000000001000000
droSec2
TTGAGCAACGATTAATTT--ATTTAGCT---GACTTTCAAATCTGACACGTGAA---------G----------------------GTA-AATAAATTTGAAT--ATA--AATGTAAA-TCTATG---GATCAACGATTTCTGGTAATTATT-TATAAGGGTTGATTATCATG--TATAACCCTTTGAAACGG-----------------------A--------------------------------AGTATTATACTTTATCAACACTGTGTATTTG-AACAGCTGTT-----TGGCCCGT-AGTTGTAGG-TACTATTTTTGAAAACACCA---------------------T------------TGGAGGTTC---CGAGACAAACAAA-TCAGGCACCGTTTTA-TTGGA-TCCCAATCGAACAGCTGA---CTTACCTTTCG---GCCCGTTAGT--------TTTCC-CGATCGCCCTGCATATGATA------------------------------CCATATCTCCCATTACAGCGC------TGCAG-TCCAATCAAACCGGTTT------GTCGCCTTTCGACTTTTCGGTG----------GTCSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCAATCAAACCGGTTT------GTCG...............................2111.0011000
dm3
TTGAGAAACAATTAGTTA--ATTTTGCT---GACTTTCAAATCTGACACGTGAA---------G----------------------GTA-AATAAATTCAAAT--AGA--AATGTAA---CTATG---GATCAGCGCTTTCCTGTAATTATT-TATTAGGGTTGATTATCTTG--TATAACCCTTTGAAACGG-----------------------A--------------------------------AGCATTATCCTTAATCAACACTGTGTACTTG-AACAGCTGTT-----TGGCCCGT-AGTTGTAGG-TACTATTTTTGAAAACACCA---------------------T------------TGGGAGTTCCCACAAGACAAACAAATCCGTGCACCGTTGTA-TTGGA-TTCCAATCGAACAGCTGA---CATACCTTCGG---GCCCGTTAGT--------TTTCC-CGATCGCCCTGCATATGATA------------------------------CCATATCTCCCATTACAGCGC------TGCAG-CCCAATCAAACCGGTTT------GTCGCCTTTCGACTTTTCGGTG----------GTCSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
.............................................................................................................................................................................................................................................................................................................................................................................................................................GGA-TTCCAATCGAACAGCTGA---C..................................................................................................................................................................................2219.0090000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000090000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCCAATCAAACCGGTTT------GTCGCCTT...........................2513.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000300000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TT------GTCGCCTTTCGACTTTTCGGTG----------GT.2613.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000
.................A--ATTTTGCT---GACTTTCAAATCTG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2312.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATCAAACCGGTTT------GTCGCC.............................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................GA---CATACCTTCGG---GCCCGT...............................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGCCTTTCGACTTTTCGGT..............2011.0010000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................TTCCAATCGAACAGCTGA---CAT................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATCTCCCATTACAGCGC------TGCAG-C.........................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................GTA-TTGGA-TTCCAATCGAACAGCTG.......................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCAAACCGGTTT------GTCGC..............................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................ACAAGACAAACAAATCCG...........................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AG-CCCAATCAAACCGGTTT------GTC................................2211.0010000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACAGCGC------TGCAG-CCCAAT....................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................TTTTTGAAAACACCA---------------------T------------TGGGA...................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................CGTGCACCGTTGTA-TTGGA-T.......................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010
..............................................................................................................................................................................................................................................................................................................................................................................................................TGCACCGTTGTA-TTGGA-TTCCAAT.................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGCATATGATA------------------------------CCATATCTCCC................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................AGCTGTT-----TGGCCCGT-AGTTGTAGG-TAC...........................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATGATA------------------------------CCATATCTCCCATTACAGC........................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCCAATCAAACCGGTTT------G..................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGT--------TTTCC-CGATCGCCCTGCAT...............................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCAAACCGGTTT------GTCGCCTTTCGAC......................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGT--------TTTCC-CGATCGCCCTGCA................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................GTTGTA-TTGGA-TTCCAATCGAA.............................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATGATA------------------------------CCATATCTCCCATTACAGCGC------................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCCAATCAAACCGGTTT------GTCGCC.............................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................A-TTGGA-TTCCAATCGAACAGCTGA---C..................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAGT--------TTTCC-CGATCGCCCTGCATA..............................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCCAATCAAACCGGTTT------GTCGCCT............................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................TCCAATCGAACAGCTGA---CA.................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000
.....................................................................................................................................................................................................................................................................................................................................GAAAACACCA---------------------T------------TGGGAGTT................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................TCCAATCGAACAGCTGA---CATACCTTC..........................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................G-CCCAATCAAACCGGTTT------G..................................1911.0010000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................GACTTTCAAATCTGACACGTGAA---------G----------------------T..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTT------GTCGCCTTTCGACTTTTCGGTG----------G..2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTT------GTCGCCTTTCGACTTTTCGGT..............2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCC-CGATCGCCCTGCATATGATA------------------------------...........................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TT------GTCGCCTTTCGACTTTTCGGTG----------GTC2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..GAGAAACAATTAGTTA--ATT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000
......................................................................................................................................CGCTTTCCTGTAATTATG-................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1820.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droEre2
TTGAGCAACAATTGATTTTTTTTTTGCA---GACTTTCAAATTTGACACGTGAA---------G----------------------GTA-AATAAGTTTAAAC--ATA--GATTTAAA-TTTATGGAGGATCAGCGTTTATTGGTTATAATAATATAAGGGTTGATTATCTTG-TTATAACCCTTTAGAACCG-----------------------A--------------------------------AGTATTATCCCTTATCAACACTGTGTATTTG-AACAGCTGTT------GAAATGT-GGTTGTAGG-TACTATTTTTGAAAAGACAA---------------------T------------T-GGGGTTT---CGAGACAAACAAT-TCGGGCACCCTTTTAGTTGGA-TCCCATTCGAACAGCTGA---CAGACCTTCGG---GCCCGTTAGA--------TTTCCTCGATCGCCCTGCATATGATA------------------------------TCTTATCTCCCATTACAGCGC------TGCAG-TCCAATCAAACCGGTTT------GTCGCCTCTCGACTTTTCGGTG----------GTCSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A------------------------------TCTTATCTCCCATTACAGCGC------................................................................2211.0011000000
droYak3
CTGAGCAACGATTACTTT--ATTT-------------CGAATCTGACACGTGAA---------G----------------------GTA-AATAAGTTTAAAT--ATA--GATTTAAA-TTTATG---GATCGGCGCTTATTCACAATAATG-TATACGGGTTGATTATCCGG-TTATAACCCTTTAAAACCA-----------------------A--------------------------------AGTAATATCCCTTATCAACACTGTGTATTTG-AACAGCTGTT-----TGGCCTGTTAATTCTATG-TACTATTTTTGAAACGACAA---------------------T------------T-GGGGTTT---CGAGACCAACAAC-TTGGACACCCTTTTAGTTTGA-TCCCCATCGAACAGCTGA---CAGACCTTCGG---ACCCGTTAGA--------TTTCCCCGATCGCCCTGCATATGATA------------------------------TCATATCTCCCATTACAGCGC------TGCAG-TTCAATCAAACCGGTTT------GTCGCCTTTCGACTTTTCGGTG----------GTCSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCAATCAAACCGGTTT------GTCGCCTT...........................2511.00101000000000
........................................................................................................................................................................................................................................................................................................................................................................................TT---CGAGACCAACAAC-TTGGACACCC....................................................................................................................................................................................................................2511.00110000000000
droEug1
TTGTTTAACTATTAATAA--AGTTCAGTGGCGGCTTTTT------ATTGGCATA---------G----------------------GGA-AATCAATTAAAATTT--ATTATATTGCCATT-TTT---TATCAGTAAATAATGCCAACCTTT-TATAAAG------------------AAAGCC-----------------------------------------------------TATAGAAAGCAGTATATTGACCCTTATCAACACTGTCTATGCT-AACAGCTGTT-----TGACCTGTTAGTTGTAGG-TACTATTTTTGAAAAAACATT---GGAGTGGGA--------CT-----------T-GGGGTTT---CGAGTCAAACAAACTTGGCAACCATTTTAATTGGA-TCCCAATCGAACAGCTGA---CGCAGGGCCAA---CTCCGTTAGT--------TTTCC-CGATCGCGTTGCAT-----------------------------------ATCATAACTCCCATTACAACGC------TGCAG-TTGAATCAAACCGGTTT------GTCGCCTCTCGATTTTTCGGTG----------GTTSizeHit CountTotal NormTotal
No Reads
droBia1
TTGAGCAACGACTTGTGC--ATTTCGTA---GACGGATAAATTTGACACGTTAA---------G----------------------GTA-AATAAGTTCAAATTC--AGCAGGTTAACATTTTTA---GTTCAACACACGTTGGCAATCATT-TTTAGGCCTGCATT-TATTGCACAAAAAGCT-----------------------------------------------------CATCGCGGGTAGCGAACTGCAGCTTATCAACACTGTCTGGGCT-AACAGCTGTTTC--TTGGCCTGTTATTTGTAGG-TACTATTTTTGAAAAGAGCC-TGTGGAGTGGGAGTCCGAGAT------------T-GGGGCTG---CGCGACCAACAAC-CTGGCCACCATTTTAATTGAA-CCCCAATCGAACAGCTGA---CGTACCGCAGG---CCCCGTTAGTTAGTTAGTTTTCCCCGATCGCGTTGCAC-----------------------------------ATCACATCTCCCATTACAGCGC------TGCAG-TCCAAGCAAACCGGTTT------GTCGCCTCTCGATTTTTCGGCG----------GTCSizeHit CountTotal NormTotal
No Reads
droTak1
TTGGACAACAACTAATTT--AGTTTGTA---GACTAGAAAATTTGACACGCTCA---------G----------------------GTA-AATAAATTTAAATCT--ATTTA--------TTTTA---GATCAAAACACGTTGGCAATAATT-TATAGGGGTGGATTTTAATGTTTATAAAGCT-----------------------------------------------------TACCGTGAGTGGGGAATCGCACCTTATCAACACTGCCTAGTCT-GACAGCTGTTTCGTTTGGCCTGCTACTTGTAGG-TACTATT-TTGAAAAGACATT---GGAGTGGGA--------T------------T-GGGGTTC---CGAGACCCACAAACCTGGCCACCATTTTAATTGAA-TCCCAATCGAACAGCTGA---CGTACCGCAGG---CCCCGTTAGT--------TTTCC-CGATCGCGTTGCAT-----------------------------------ATCATATCTCCCATTACAGCGC------TGCAG-TCGCAACAAACCGGTTTGTC-TTGTCACCTCTCGATTTTTCGGTG----------GTCSizeHit CountTotal NormTotal
No Reads
droEle1
TTGAGCAACGATTTCTTT--AATGTGTA---GAATGCTATATTTGACACGCTCA---------G----------------------GTA-TAAATATTTAAAATT--ATTTAATTATCTTTTCTA---GACCAGTGCAAGTTGGCAACAATT-AAAAAGGTTAGATTG-ATTGTTTATAAAGCT-----------------------------------------------------AGTCGTGAG-------CAGCTGCTTATCAACACTGTCTAGGTC-AACAGCTGAT-----TCGCCTATTATTCGAAGGGCTCTAT-TTTGAAAAGACAATTGGGGAGTGGGT--------C------------T-GGCACTT---TAAAACAAACAAAGCTGGCCACCATTTTAATTGGA-TCCCAATCGAACAGCTGA---CGTACGGCCAT---CCCCGTTAGT--------TTTCC-CAATCTCGTTGCAT-----------------------------------A-----TCTGTCATTACAACGC------TGCAG-TTGAATCAAACCGGTTT------GTCGCCTCTCGATTTTTCGGTG----------GTTSizeHit CountTotal NormTotal
No Reads
droRho1
TTAGGCAGCGACTATTTT--TGTGTGGA---GA-------GTTTGACACACTTG---------G----------------------TT--TAAAAATTTTAATGTATA--AAGTTAAT-TTTTTA---GATTAACGACAGTTAGAAACATTT-AAAGAAAGTGG-CTA-ATTGATTGTAACGAT-----------------------------------------------------TACCGTGAG-------CAACAGTTAATCAACACTGTCTAGGTC-AACAGCTGTT-----CCA-CTGTTAATAGTAGG-TACAATTTTTGAAAAGCCAGTTGAGGAGGGGGT--------T------------C-GGGGTCT---TAAAACAATCAAACCTGGCCACCATTTTATTTGGA-TCCCAGTCCAACAGCTGA---CGTACCGCCGA---CCCCGTTAGT--------TTTCC-CAATCGCATTGCAT-----------------------------------A-----TCTTTCATTACAACGC------TGCAG-TCGAATCAAACCGGTTT------GTCGCCTCTCGATTTTTCGGTG----------GTTSizeHit CountTotal NormTotal
No Reads
droFic1
CTGTGCAACGAATATTTT--C---TGCA---GA-------GATTGTAAAGCTTTGCTTACTCAGTTACGTAAATACTCAGTTAAATGTA-AATAAATCTAA--------------------------------------------------------------------------TAAAACCCTTAATAAAGAGTACTTAAATTAGTCAAAGGCGGAAAAATGTATTATTACATGTCTTCTGGTAACA-GTTGTTGCACCTTATCAACACTGTATAGGCC-AACAGCTGTT-----TTGTCTGTTGTTTGCAGG-TACTATTTTTGAATTGACACTTGAGGAGTGAGA--------C------------T-GGGGTCT---TTTAACAAACAAA-CCGTCCACCATTTTAATTGGA-TCCCAATCGAACAGCTGA---CGTGCCGCCGG---CCCCGTTAGT--------TTTCC-TGATCGCGTTGCAT-----------------------------------A-----TTTTTCCTTACGCTGC------TGCAG-TCGAATTAAACCGGTTT------GTCGCCTCTCGATATTTCGGTA----------GTTSizeHit CountTotal NormTotal
No Reads
droKik1
TACA-------T-----------------------------------------------------------------------------------------------------------------------------TT-----------------------------TCTT--------------------------------------------------------------------------------------GTTGTCCAACACTGCCTAAGCAAAACAGCTGTT-----GAGCCGGTT---TGT--C-AACTATTTTTGAA----------------------------CTGGGGAAAATGGAT-A-ATTT---TG-----AAC------AACCACCATTTTAAGTGAAATCG-----AAACAGCTGTAGTCGCCTCGCCGGTCGCCCCGTTAGT--------TTTCC-CGTTCCGATTGCAC-----------------------------------CTC---------------GTCT------TGCAG-TC----CGAACCGGTTT-----------CTCTCGATTTTTCGGTGAGTCTCCTCCGTCSizeHit CountTotal NormTotal
No Reads
droAna3
A-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T------------T-GGAGTTTT--C----CAAACAAAGTTGGCCACCATTTTTGT-GAAATCC-----TATCAGCTGA---CGTTTAGCCGGTCACTCCGTTAGT--------TTTCC-TGAGCGCATCAGGT--AACAATCTCACTCTCAATATCGTTGCACTGCATA-----GTGT-C--TGCACCGCTCGTTTTTCAA-CTTCGTCGAACCGGTTTA-----GTGGAGTCTCGACTTTTCTGTG----------G--SizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
No Reads
droBip1
TTGTTTTA-------------TTT--------------------TACATTTTTA---------A----------------TTAAATTTACCATAAGTTTAA--------TTAATGACCTTATAT-----ACTGACG---------------AATATAATGGTTTTTTAT-------------------------------------------------------------------------------------TTATGTTAGCCAACACTGCATAGAC----CAGATGAT-----T--------------------------TCAAAGGGAAATATGGGTCGCCGAA--------T------------T-GGAGTTTT--C----CAAACAAAGTTGGCCACCATTTTTGT-GAAATCT-----TATCAGTTGA---GGTTTAGCCGGTTACTCCGTTAGT--------TTTCC-TGAGCGCA--GCAAGTAACAATCTGACTCCCAAAAGCGTATTATTGCATA-----TTGT-C--TGCACCGCTCGTTTTTCAA-CTTCGTCGAACCGGTTTA-----GAGGAGTCTCGACTTTTCGGTG----------G--SizeHit CountTotal NormTotal
No Reads
dp5
CGTA-------C-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTGTGTG-T-TTGTTGTTTAAAATAT-G---------------------T------------ACGAGGTTT---T------AACGATCTCGACCACCATTTTACTTGACAC----AT-CAACAGCTGT------GCAATAGT--ACGCCGTTAGC--------TTTCC-TGGGCCCCTTTCGA--------------------------------------------------GCAGCAT------TGCGCATACCATTGAACCGGTTTTCCACTGCCGCTTCTTGATTTTTCGGCGT---------GCTSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
........................................................................................................................................................................................................................................................................................................................................................................................................................TACTTGACAC----AT-CAACAGCTGT------GCAA............................................................................................................................................................................2612.0020200000000
........................................................................................................................................................................................................................................................................................................................................................................................................................TACTTGACAC----AT-CAACAGCTGT------GCA.............................................................................................................................................................................2511.0010100000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................AACAGCTGT------GCAATAGT--ACGCC.................................................................................................................................................................2211.0010010000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGC--------TTTCC-TGGGCCCCTTTCGA--------------------------------------------------G............................................................................2311.0010100000000
droPer2
CGTA-------C-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTGTGTG-T-TTGTTGTTTAAAATAT-G---------------------T------------ACGAGGTTT---T------AACGATCTCGACCACCATTTTACTTGACAC----AT-CAACAGCTGT------GCAATAGT--ACGCCGTTAGC--------TTTCC-TGGGCCCCTTTCGA--------------------------------------------------GCAGCAT------TGCGCATACCATTGAACCGGTTTTCCACTGCCGCTTCTCGATTTTTCGGCGT---------GTTSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTCCACTGCCGCTTCTC.........................1811.001100000
........................................................................................................................................................................................................................................................................................................................................................................................TT---T------AACGATCTCGACCACC.....................................................................................................................................................................................................................1911.001000001
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTAGC--------TTTCC-TGGGCCCCC....................................................................................................................................2011.001100000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTAGC--------TTTCC-TGGGCCCCT....................................................................................................................................2011.001100000

Generated: 05/19/2015 at 02:53 PM