ID:

dsi_13074

 Coordinate:

2r:14366676-14366897 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-4.9 -4.5 -4.5

Flybase annnotation

CDS [2r_14366911_14367375_-]; Antisense to CDS [2r_14365064_14366686_+]; Antisense to three_prime_UTR [2r_14366687_14366840_+]; Antisense to exon [2r_14365064_14366840_+]; three_prime_UTR [2r_14366680_14366910_-]; exon [2r_14366680_14367684_-]

No Repeatable elements found

Sense Strand Reads

############################################################################################################################################################################################################################################################################------------------------------------------------------
CACCAAGAAGCACAGCGAAAAACGTCCGGCCGACTAGCGGATAGGCGAAGGTATAGCTGGAGGAGGTGGGCCAGTCCACAACCCATGTGTACCCTTACCCCTTAGTCTTGTGATTTTTCAGTTAGTTATTTAATTTTCATTTTTGATCCCTGAAAAACTATCCTCAGAAAACATTTAAGCATATATTTCCCCGGCAGAGTACCTAGTTTTGTAAAAGTAGCACTGTAATTTGATGCAAGTGAGAAATACATGTTCGTTATGTTAAAATACAGCTGCCGACTCTTGGACCGAGCCGACATCCGTGTTGGATGTTGGAGCCACC
************************************************************************************************************************************************************************************************************.....((((.......(((((((......))).)))).....)))).........*************************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR902009
testis
 O001
Testis
 SRR553487
NRT_0-2 hours eggs
 SRR618934
dsim w501 ovaries
 SRR553486
Makindu_3 day-old ovaries
 SRR553485
Chicharo_3 day-old ovaries
 M053
female body
 M024
male body		 SRR553488
RT_0-2 hours eggs
 M023
head
 O002
Head
 SRR902008
ovaries
............................................................................................................................................................................................................AGTTTTGTAAAAGTAGCACTG................................................................................................. 21 0 1 4.00 4 0 2 1 1 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................TTCCCCGGCAGAGTACCTAGT................................................................................................................... 21 0 1 4.00 4 3 0 0 0 0 0 0 0 0 0 1 0
.........................................................................................................................................................................................................................................TGCAAGTGAGAAATACATGTTCGTTA............................................................... 26 0 1 4.00 4 0 0 1 1 1 1 0 0 0 0 0 0
...............................................................................................................................................................................TAAGCATATATTTCCCCGGCA.............................................................................................................................. 21 0 1 4.00 4 3 0 0 0 1 0 0 0 0 0 0 0
.................................................................................................................................................................................................................TGTAAAAGTAGCACTGTAATTTGATGCA..................................................................................... 28 0 1 4.00 4 0 0 0 0 1 3 0 0 0 0 0 0
..............................................................................................................................................................................................................................CTGTAATTTGATGCAAGTGAG............................................................................... 21 0 1 4.00 4 0 3 0 1 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................................TAAAAGTAGCACTGTAATTTG.......................................................................................... 21 0 1 4.00 4 1 0 1 0 1 1 0 0 0 0 0 0
...............................................................................................................................................................................................................................TGTAATTTGATGCAAGTGAGA.............................................................................. 21 0 1 3.00 3 0 1 2 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................................AAAAGTAGCACTGTAATTTGA......................................................................................... 21 0 1 3.00 3 0 0 2 0 1 0 0 0 0 0 0 0
..................................................................................................................................................................CTCAGAAAACATTTAAGCATA........................................................................................................................................... 21 0 1 3.00 3 2 0 1 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................................TTTTGTAAAAGTAGCACTGTA............................................................................................... 21 0 1 3.00 3 0 0 3 0 0 0 0 0 0 0 0 0
................................................................................................................................................................................AAGCATATATTTCCCCGGCAG............................................................................................................................. 21 0 1 2.00 2 1 1 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................................TTTGTAAAAGTAGCACTGTAATTTGA......................................................................................... 26 0 1 2.00 2 0 0 0 0 2 0 0 0 0 0 0 0
...............................................................................................................................................................................TAAGCATATATTTCCCCGGCAA............................................................................................................................. 22 1 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................................AAAGTAGCACTGTAATTTGATA....................................................................................... 22 1 1 2.00 2 0 0 2 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................CCCGGCAGAGTACCTAGTTTT................................................................................................................ 21 0 1 2.00 2 1 1 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................TTTAAGCATATATTTCCCCGG................................................................................................................................ 21 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................................TAAAAGTAGCACTGTAATTTGATGCA..................................................................................... 26 0 1 2.00 2 0 0 0 0 2 0 0 0 0 0 0 0
...............................................................................................................................................................................................................TTTGTAAAAGTAGCACTGTAA.............................................................................................. 21 0 1 2.00 2 0 2 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................................TAGTTTTGTAAAAGTAGCACT.................................................................................................. 21 0 1 2.00 2 0 0 2 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................................................TGCAAGTGAGAAATACATGTTCG.................................................................. 23 0 1 2.00 2 0 2 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................TAAGCATATATTTCCCCGGCATT............................................................................................................................ 23 2 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................TTTTTGATCCCTGAAAAACT................................................................................................................................................................... 20 0 2 1.50 3 0 0 0 0 0 0 0 1 0 2 0 0
..........................................................................................ACCCTTACCCCTTAGTCTTGT................................................................................................................................................................................................................... 21 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0
.................................................................................................................................................................................................................................TAATTTGATGCAAGTGAGA.............................................................................. 19 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................CATTTAAGCATATATTTCCCC.................................................................................................................................. 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
..................AAAACGTCCGGCCGACTAGCGGATA....................................................................................................................................................................................................................................................................................... 25 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0
.....................................................................................................................................................................................TATATTTCCCCGGCAGAGTG......................................................................................................................... 20 1 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0
................................................................................................................................................................................................................TTGTAAAAGTAGCACTGTAATTTGATGCA..................................................................................... 29 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0
........................................................................................................................................................AAAAACTATCCTCAGAAAACA..................................................................................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................ATTTTTGATCCCTGAAAAACT................................................................................................................................................................... 21 0 2 1.00 2 0 0 0 2 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................................................................................................................................CCGTGTTGGATTTTGGAGCCA.. 21 1 1 1.00 1 0 0 0 0 0 0 0 0 0 1 0 0
........................................................................................................................................................................................................ACCTAGTTTTGTAAAAGT........................................................................................................ 18 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0
...........................................................................................................................................................................................................TAGTTTTGTAAAAGTAGCACTGTAATT............................................................................................ 27 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0
....................................................................................................................................................................................................................AAAAGTAGCACTGTAATTTG.......................................................................................... 20 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................TTTCCCCGGCAGAGTACCTAGT................................................................................................................... 22 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................................................TAATTTGATGCAAGTGAGAAA............................................................................ 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................................TTTGTAAAAGTAGCACTGTAATTTGAT........................................................................................ 27 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0
.................................................................................................................................................................CCTCAGAAAACATTTAAGCA............................................................................................................................................. 20 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 1 0
....................................................................................................................................................................CAGAAAACATTTAAGCATATA......................................................................................................................................... 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................................GTAAAAGTAGCACTGTAATTTGATGCAAG................................................................................... 29 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0
...............................................................................................................................................................................TAAGCATATATTTCCCCGGCAT............................................................................................................................. 22 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................AGCATATATTTCCCCGGCAG............................................................................................................................. 20 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 1
..........................CGGCCGACTAGCGGATAGGCGA.................................................................................................................................................................................................................................................................................. 22 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0
..............................................................................................................................................................................TTAAGCATATATTTCCCCGGC............................................................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................................................TTGATGCAAGTGAGAAATACATGTT.................................................................... 25 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0
.............................................CGAAGGTATAGCTGGAGGA.................................................................................................................................................................................................................................................................. 19 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................TTTCCCCGGCAGAGTACCTAGTAA................................................................................................................. 24 2 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0
.....................................................................................................................................................................................TATATTTCCCCGGCAGAGTT......................................................................................................................... 20 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................ATTTTCATTTTTGATCCCTGA......................................................................................................................................................................... 21 0 2 1.00 2 0 2 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................................................................AGAAATACATGTTCGTTATGTTAAA........................................................ 25 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................CTCAGAAAACATTTAAGCAT............................................................................................................................................ 20 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................................................AGTAGCACTGTAATTTGATG....................................................................................... 20 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0
..................................TAGCGGATAGGCGAAGGTATAGCT........................................................................................................................................................................................................................................................................ 24 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 1
.....................................................................................................................................................................................TATATTTCCCCGGCAGAGTAC........................................................................................................................ 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................................................................................ATGCAAGTGAGAAATACATGTTCGTTA............................................................... 27 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0
.........................................................................................................................................................................................TTTCCCCGGCAGAGTACCTAG.................................................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................CGGCAGAGTACCTAGTTT................................................................................................................. 18 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................................AAAGTAGCACTGTAATTTGATGCAAGTG................................................................................. 28 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0
................................ACTAGCGGATAGGCGAAGGTA............................................................................................................................................................................................................................................................................. 21 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0
..................................................................................................................................................................CTCAGAAAACATTTAAGCA............................................................................................................................................. 19 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................CATATATTTCCCCGGCAGAG........................................................................................................................... 20 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................TTTTTGATCCCTGAAAAACTA.................................................................................................................................................................. 21 0 2 1.00 2 0 2 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................CCCGGCAGAGTACCTAGTTT................................................................................................................. 20 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................................................................................TTGTAAAAGTAGCACTGTAAT............................................................................................. 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................................................................................TTGTAAAAGTAGCACTGT................................................................................................ 18 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0
............................................................................................................................................TTTTGATCCCTGAAAAACTATCCTCA............................................................................................................................................................ 26 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0
....................................................................................................................................................................................................................AAAAGTAGCACTGTAATTTGATGCA..................................................................................... 25 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0
................................ACTAGCGGATGGGCGAAGGT.............................................................................................................................................................................................................................................................................. 20 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................................................AGTAGCACTGTAATTTGATGCAAGTGAG............................................................................... 28 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0
.......................................GATAGGCGAAGGTATAGCGGG...................................................................................................................................................................................................................................................................... 21 1 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0
.............................................................................................................................................................................................................................ACTGTAATTTGATGCAAGTGA................................................................................ 21 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
.................................CTAGCGGATAGGCGAAGGTAT............................................................................................................................................................................................................................................................................ 21 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0
..........................................................................................................................................................AAACTATCCTCAGAAAACATT................................................................................................................................................... 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................CTGAAAAACTATCCTCAGAAA........................................................................................................................................................ 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................................TTTGTAAAAGTAGCACTGTAT.............................................................................................. 21 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................................................TTTGATGCAAGTGAGAAATACATG...................................................................... 24 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................................................................GTGAGAAATACATGTTCGT................................................................. 19 0 2 1.00 2 0 0 0 0 0 0 0 2 0 0 0 0
.......................................................................................................................................................GAAAAACTATCCTCAGAAAAC...................................................................................................................................................... 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................................AAGTAGCACTGTAATTTGATG....................................................................................... 21 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0
..............................................................................................................................................................................................................TTTTGTAAAAGTAGCACTGTAATT............................................................................................ 24 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0
.............................................................................................................................................TTTGATCCCTGAAAAACTA.................................................................................................................................................................. 19 0 3 1.00 3 0 3 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................................................CTGTAATTTGATGCAAGTGA................................................................................ 20 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
..............GCGAAAAACGTCCGGCCGACTAGC............................................................................................................................................................................................................................................................................................ 24 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0
...................................................................................................................................................................................................................................................AAATACATGGTCGTGATGTTA.......................................................... 21 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................AATTTTCATTTTTGATCCC............................................................................................................................................................................ 19 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................................................................................................GACTCTTGGACCGAGCCGACA........................ 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................TAAGCATATATTTCCCCGGTTT............................................................................................................................. 22 3 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................AGCATATATTTCCCCGGCAGA............................................................................................................................ 21 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0
.....................................................................................................................................................................................................................AAAGTAGCACTGTAATTTGA......................................................................................... 20 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0
.........................................................................................................................................................AAAACTATCCTCAGAAAACAT.................................................................................................................................................... 21 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0
.......................................................................................................................................................................................................................AGTAGCACTGTAATTTGATGC...................................................................................... 21 0 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0 0
....................................................................................................................................................................................................................................TTTGATGCAAGTGAGAAATACATGTTC................................................................... 27 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................TATTTCCCCGGCAGAGTACCT...................................................................................................................... 21 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0
................................................................................................................................................................TCCTCAGAAAACATTTAAGCAT............................................................................................................................................ 22 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................................................TAATTTGATGCAAGTGAGAAATACATG...................................................................... 27 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................................................AAGTGAGAAATACATGTTCGT................................................................. 21 0 2 1.00 2 0 2 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................................................................................................TACAGCTGCCGACTCTTGG.................................... 19 0 1 1.00 1 0 0 0 0 0 0 0 0 0 1 0 0
..........................................................................................................................................................................................................................................GCAAGTGAGAAATACATG...................................................................... 18 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................................................TTCAAGTGAGAAATACATGTTCGTTA............................................................... 26 1 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0
.........................................................................................................................................................................................................CCTAGTTTTGTAAAAGT........................................................................................................ 17 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0
...............................................................................................................................................................................................................................................TGAGAAATACATGTTCGTTATGTTAAAA....................................................... 28 0 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0 0
........AGCACAGCGAAAAACGTCCGG..................................................................................................................................................................................................................................................................................................... 21 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0
.....................................................................................................................................TTTTCATTTTTGATCCCTGA......................................................................................................................................................................... 20 0 2 1.00 2 0 2 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................TCAGAAAACATTTAAGCATATA......................................................................................................................................... 22 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 1 0
...................................................................................................................................................................................................................................................AAATACATGTTCGTTATGTTA.......................................................... 21 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0
......................................................................................................................................................................................ATATTTCCCCGGCAGAGTACC....................................................................................................................... 21 0 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0 0
...........................................................................................................................................................................................................TAGTTTTGTAAAAGTAGCACTGTA............................................................................................... 24 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................................TAAAAGTAGCACTGTAATTT........................................................................................... 20 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................TGATTTTTCAGTTAGTTATTTA.............................................................................................................................................................................................. 22 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................................TTTGTAAAAGTAGCACTGA................................................................................................ 19 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................CCCTTAGTCTTGTGATTTTTCAGT........................................................................................................................................................................................................ 24 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0
....................................................................................................................................................................................................................................TTTGATGCAAGTGAGAAATAC......................................................................... 21 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................................................................CAAGTGAGAAATACATGTTCGT................................................................. 22 0 2 0.50 1 0 0 0 0 0 0 0 1 0 0 0 0
.........................................................................................................................................CATTTTTGATCCCTGAAAAAAA................................................................................................................................................................... 22 2 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................CATTTTTGATCCCTGAAAAACT................................................................................................................................................................... 22 0 2 0.50 1 0 0 0 0 0 0 0 1 0 0 0 0
...........................................................................................................................................................................................................................................CAAGTGAGAAATACATGTTCGTTATGT............................................................ 27 0 2 0.50 1 0 0 0 0 1 0 0 0 0 0 0 0
............................................................................................................................................TTTTGATCCCTGAAAAACTATCC............................................................................................................................................................... 23 0 2 0.50 1 0 0 0 0 1 0 0 0 0 0 0 0
............................................................................................................................................TTTTGATCCCTGAAAAACTAT................................................................................................................................................................. 21 0 2 0.50 1 0 0 0 1 0 0 0 0 0 0 0 0
.....................................................................................................................................TTTTCATTTTTGATCACTGAAA....................................................................................................................................................................... 22 1 2 0.50 1 0 0 0 0 0 0 1 0 0 0 0 0
.............................................................................................................................................TTTGATCCCTGAAAAACTATC................................................................................................................................................................ 21 0 2 0.50 1 0 0 0 0 1 0 0 0 0 0 0 0
...............................................................................................................................................................................................................................................TGAGAAATACATGTTCGTTATGTT........................................................... 24 0 2 0.50 1 0 0 0 0 1 0 0 0 0 0 0 0
...........................................................................................................................................................................................TCCCCGGCAGAGTACC....................................................................................................................... 16 0 2 0.50 1 0 0 0 1 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................................................AAGTGAGAAATACATGTTCGTTA............................................................... 23 0 2 0.50 1 0 0 0 0 1 0 0 0 0 0 0 0
....................................................................................................................................................................................................................................................AATACATGTTCGTTATGT............................................................ 18 0 2 0.50 1 0 0 0 0 0 0 0 1 0 0 0 0
.........................................................................................................................................................................................TTTCCCCGGCAGAGTACC....................................................................................................................... 18 0 2 0.50 1 0 0 0 1 0 0 0 0 0 0 0 0
....................................................................................................................TTCAGTTAGTTATTTA.............................................................................................................................................................................................. 16 0 3 0.33 1 0 0 0 0 0 1 0 0 0 0 0 0
................................................................................................................................................................................................GGTAGAGTACCTCGTT.................................................................................................................. 16 2 20 0.25 5 0 0 0 0 0 0 0 0 5 0 0 0
....................................................ATAGCTGGAGGAGGTGGGTTT......................................................................................................................................................................................................................................................... 21 3 7 0.14 1 1 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................................................................GATGCAAGGGAGAAATA.......................................................................... 17 1 7 0.14 1 0 0 0 1 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................................................................................................CCGACCCTTCGACCGAG.............................. 17 2 9 0.11 1 0 0 0 0 1 0 0 0 0 0 0 0
...................................AGCGGTAACGCGAAGGTA............................................................................................................................................................................................................................................................................. 18 3 20 0.10 2 0 0 2 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................................................TGATGCGAGTGAGAA............................................................................. 15 1 11 0.09 1 0 0 1 0 0 0 0 0 0 0 0 0
....................................GCCGATAGGCGAAGGCGTAG.......................................................................................................................................................................................................................................................................... 20 3 13 0.08 1 0 0 0 0 0 0 0 0 1 0 0 0
.............................................................................................................................................................................................................................................................................CAGCTGCCAACTGTTGGA................................... 18 2 14 0.07 1 0 0 0 0 0 0 0 0 1 0 0 0
.......................................................................................................................................TTCACTTCTGATCCCTGAT........................................................................................................................................................................ 19 3 20 0.05 1 0 0 1 0 0 0 0 0 0 0 0 0
.....................................................................................................................................TTTTCATTTTAGATCCCA........................................................................................................................................................................... 18 2 20 0.05 1 0 0 0 0 0 0 0 0 1 0 0 0
...................................................................................................................................................................TCTGAAAACATCTAAGC.............................................................................................................................................. 17 2 20 0.05 1 0 0 0 0 0 0 0 0 1 0 0 0

Anti-sense strand reads

-----------------------------------------------------------------------------------------------------------#######################################################################################################################################################################################################################
GTGGTTCTTCGTGTCGCTTTTTGCAGGCCGGCTGATCGCCTATCCGCTTCCATATCGACCTCCTCCACCCGGTCAGGTGTTGGGTACACATGGGAATGGGGAATCAGAACACTAAAAAGTCAATCAATAAATTAAAAGTAAAAACTAGGGACTTTTTGATAGGAGTCTTTTGTAAATTCGTATATAAAGGGGCCGTCTCATGGATCAAAACATTTTCATCGTGACATTAAACTACGTTCACTCTTTATGTACAAGCAATACAATTTTATGTCGACGGCTGAGAACCTGGCTCGGCTGTAGGCACAACCTACAACCTCGGTGG
***************************************************************.....((((.......(((((((......))).)))).....)))).........************************************************************************************************************************************************************************************************************ 		Read size # Mismatch Hit Count Total Norm Total SRR902009
testis
 SRR553487
NRT_0-2 hours eggs
 SRR553486
Makindu_3 day-old ovaries
 SRR553485
Chicharo_3 day-old ovaries
 O001
Testis
 SRR618934
dsim w501 ovaries
 SRR553488
RT_0-2 hours eggs
 M023
head
 M024
male body		 SRR902008
ovaries
.................................................................................................................................................................................................CGTCTCATGGATCAAAACATT............................................................................................................ 21 0 1 14.00 14 0 3 4 6 0 0 1 0 0 0
..........................................................................................................................................................................................AAGGGGCCGTCTCATGGATCA................................................................................................................... 21 0 1 9.00 9 4 1 0 0 0 0 3 0 0 1
..........................................................................................................................................................TTTGATAGGAGTCTTTTGTAA................................................................................................................................................... 21 0 1 9.00 9 9 0 0 0 0 0 0 0 0 0
............................................................................................................................................................TGATAGGAGTCTTTTGTAAAT................................................................................................................................................. 21 0 1 6.00 6 5 0 0 0 0 1 0 0 0 0
...........................................................................................................................................................TTGATAGGAGTCTTTTGTAAA.................................................................................................................................................. 21 0 1 6.00 6 6 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................GATAGGAGTCTTTTGTAAATT................................................................................................................................................ 21 0 1 5.00 5 4 1 0 0 0 0 0 0 0 0
............................................................................................................................................................TGATAGGAGTCTTTTGTAA................................................................................................................................................... 19 0 1 3.00 3 0 0 0 0 0 3 0 0 0 0
.................................................................................................................................................................GGAGTCTTTTGTAAATTCGTA............................................................................................................................................ 21 0 1 3.00 3 0 1 0 0 0 0 2 0 0 0
............................................................................................................................................................................................ATGGCCGTCTCATGGATCAAA................................................................................................................. 21 2 1 2.00 2 2 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................GGCCGTCTCATGGATCAAAAC............................................................................................................... 21 0 1 2.00 2 0 1 1 0 0 0 0 0 0 0
............................................................................................................................................................................................TTGGCCGTCTCATGGATCAAA................................................................................................................. 21 2 1 2.00 2 2 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................TTTGATAGGAGTCTTTTGTAAA.................................................................................................................................................. 22 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................................................................................CAATTTTATGTCGACGGCTGAGAACCT................................... 27 0 1 2.00 2 0 0 0 1 0 0 0 0 0 1
.............................................................................................................................................................GATAGGAGTCTTTTGTAAAT................................................................................................................................................. 20 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0
................................................................................................................................................................................................CCGTCTCATGGATCAAAACAT............................................................................................................. 21 0 1 2.00 2 0 0 0 0 0 0 0 1 1 0
..................................................................................................................................................AGGGACTTTTTGATAGGAGTCTTTTGT..................................................................................................................................................... 27 0 1 2.00 2 0 0 0 1 0 1 0 0 0 0
.................................................................................................................................................................GGAGTCTTTTGTAAATTCGTAT........................................................................................................................................... 22 0 1 2.00 2 0 1 0 1 0 0 0 0 0 0
...................................................................................................................................................................................................................................TAAACTACGTTCACTCTTTAT.......................................................................... 21 0 1 2.00 2 1 0 0 0 0 1 0 0 0 0
...............................................................................................................................................................................................................................ACATTAAACTACGTTCACTCT.............................................................................. 21 0 1 2.00 2 0 2 0 0 0 0 0 0 0 0
.........................................................................................................................................................TTTTGATAGGAGTCTTTTGTA.................................................................................................................................................... 21 0 1 2.00 2 1 0 1 0 0 0 0 0 0 0
.......................................................................................................................................................................................................................................CTACGTTCACTCTTTATGTACA..................................................................... 22 0 1 2.00 2 0 0 0 0 2 0 0 0 0 0
...........................................................................................................................................................................................AGGGGCCGTCTCATGGATCAAA................................................................................................................. 22 0 1 2.00 2 0 0 2 0 0 0 0 0 0 0
...............................................................................................................................................................................................GCCGTCTCATGGATCAAAACATTT........................................................................................................... 24 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0
.................................................................................................................................................TAGGGACTTTTTGATAGGAGT............................................................................................................................................................ 21 0 1 2.00 2 1 0 1 0 0 0 0 0 0 0
............................................................................................................................................AAAACTAGGGACTTTTTGAT.................................................................................................................................................................. 20 0 2 1.50 3 2 1 0 0 0 0 0 0 0 0
.............................................................................................................................................AAACTAGGGACTTTTTGATAG................................................................................................................................................................ 21 0 2 1.50 3 0 1 0 0 2 0 0 0 0 0
..............................................................................................................................................................ATAGGAGTCTTTTGTAAAT................................................................................................................................................. 19 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0
........................................................................................................................................AGTAAAAACTAGGGACTTTTT..................................................................................................................................................................... 21 0 2 1.00 2 0 1 0 1 0 0 0 0 0 0
............................................................................................................................................................................................................................................................................TGTCGACGGCTGAGAACCTGG................................. 21 0 1 1.00 1 0 0 0 0 0 0 0 0 1 0
..................................................................................................GGGAATCAGAACACTAAA.............................................................................................................................................................................................................. 18 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0
.........CGTGTCGCTTTTTGCAGGCCG.................................................................................................................................................................................................................................................................................................... 21 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0
........................................................................................................................................................................................TTAAGGGGCCGTCTCATGGA...................................................................................................................... 20 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0
................................................................................................................................................................AGGAGTCTTTTGTAAATTCGT............................................................................................................................................. 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................................................................................................CGGCTGAGAACCTGGCTCGGC........................... 21 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0
.......................................................................................................................................................................................ATAAAGGGGCCGTCTCATGGA...................................................................................................................... 21 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0
................................................................................................................................................ATTGGGACTTTTTGATAGGAGT............................................................................................................................................................ 22 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................TCAAAACATTTTCATCGTGAC................................................................................................. 21 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0
................................................................................................................................................................................................CCGTCTCATGGATCAAAACATTTTC......................................................................................................... 25 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................TAGGGGCCGTCTCATGGATCAA.................................................................................................................. 22 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0
.......................................................................................................TCAGAACACTAAAAAGTCAAT...................................................................................................................................................................................................... 21 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0
............................................................................................................................................................................................TGGGCCGTCTCATGGATCAAAA................................................................................................................ 22 1 1 1.00 1 0 0 0 0 0 0 0 0 1 0
......................................................................................................................................................ACTTTTTGATAGGAGTCTTTT....................................................................................................................................................... 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................GGGCCGTCTCATGGATCA................................................................................................................... 18 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0
...........................................................................................................................................AAAAACTAGGGACTTTTTGAT.................................................................................................................................................................. 21 0 2 1.00 2 0 1 0 1 0 0 0 0 0 0
..................................................................................................................................................AGGGACTTTTTGATAGGAGTC........................................................................................................................................................... 21 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0
............................CGGCTGATCGCCTATCCGCTT................................................................................................................................................................................................................................................................................. 21 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0
......................................................................GGTCAGGTGTTGGGTACACA........................................................................................................................................................................................................................................ 20 0 1 1.00 1 0 0 0 0 0 0 0 0 0 1
..........................................................................................................................................................................................................................................................ACAAGCAATACAATTTTATGTCGACGGC............................................ 28 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0
..........................................................................................................................................................................................TTGGGGCCGTCTCATGGATCAAA................................................................................................................. 23 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................AATGATAGGAGTCTTTTGTAAA.................................................................................................................................................. 22 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0
................................................................................................................................................................................................CCGTCTCATGGATCAAAACATTTTCAT....................................................................................................... 27 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0
.......................................................................................................................................................................................................................TCATCGTGACATTAAACTACG...................................................................................... 21 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0
..................................................................................................................................................AGGGACTTTTTGATAGGA.............................................................................................................................................................. 18 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0
................................................................................................................................................................................TTCGTATATAAAGGGGCCGTC............................................................................................................................. 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................GATAGGAGTCTTTTGTAAA.................................................................................................................................................. 19 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................................TTCATCGTGACATTAAACTAC....................................................................................... 21 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0
.......................................................................GTCAGGTGTTGGGTACACATG...................................................................................................................................................................................................................................... 21 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0
...........................................................................................................................................................................................AGGGGCCGTCTCATGGATCAAAAC............................................................................................................... 24 0 1 1.00 1 0 0 0 0 0 0 0 0 0 1
..........................................................................................................................................................................................................................................................CCAAGCAATACAATTTTATGTCGACGGC............................................ 28 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0
..........................................................................................................................................................................................................................................................ACAAGCAATACAATTTTATGTCGACGG............................................. 27 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0
..................................................................................................................................................................AAGTCTTTTGTAAATTCGTATA.......................................................................................................................................... 22 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................................TCGTGACATTAAACTACGTTC................................................................................... 21 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0
.........................................................................................................................................................TTTTGATAGGAGTCTTTTGTAA................................................................................................................................................... 22 0 1 1.00 1 0 0 0 0 0 0 0 0 1 0
.............................................................................................................................................................................................................................................................................GTCGACGGCTGAGAACCTGGC................................ 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................GGAGTCTTTTGTAAATTCGT............................................................................................................................................. 20 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0
............................................................................................................................................................................................GGGGCCGTCTCATGGATCGAA................................................................................................................. 21 1 1 1.00 1 0 0 0 0 0 0 0 0 1 0
............................................................TCCTCCACCCGGTCAGGTGTT................................................................................................................................................................................................................................................. 21 0 1 1.00 1 0 0 0 0 0 0 0 0 1 0
...................................................................................................................................................................................................CCTCATGGATCAAAACATTTTC......................................................................................................... 22 1 1 1.00 1 0 0 0 0 0 0 0 1 0 0
.......................................................................................................................................................................................................................................CTACGTTCACTCTTTATGTAC...................................................................... 21 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0
..............................................................................................................................................................ATAGGAGTCTTTTGTAAATT................................................................................................................................................ 20 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................TTGATAGGAGTCTTTTGTAA................................................................................................................................................... 20 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
...............................................................................................................................................ACTAGGGACTTTTTGATAGGAG............................................................................................................................................................. 22 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................................TAAAGGGGCCGTCTCATGGAT..................................................................................................................... 21 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0
...................................................................................................................................................................................................TCTCATGGATCAAAACATT............................................................................................................ 19 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0
...............................................................................................................................................................TAGGAGTCTTTTGTAAATTCG.............................................................................................................................................. 21 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0
.........................................................................................................................................................................TTGTAAATTCGTATATAAAGGGGC................................................................................................................................. 24 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0
.............................................................................................................................................................................................................................................................................................CTGGCTCGGCTGTAGGCTCAACCTA............ 25 1 1 1.00 1 0 0 0 0 0 0 0 0 0 1
..................................................................................................................................................................GAGTCTTTTGTAAATTCGTGT........................................................................................................................................... 21 1 1 1.00 1 0 0 0 0 0 1 0 0 0 0
.....................................................................................................................................................................................TTTTTAAGGGGCCGTCTCATGGA...................................................................................................................... 23 3 1 1.00 1 1 0 0 0 0 0 0 0 0 0
.............................................................TTTTCACCCGGTCAGGTGTTGG............................................................................................................................................................................................................................................... 22 3 1 1.00 1 1 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................AAAGGGGCCGTCTCATGGATC.................................................................................................................... 21 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0
.........................................................................................................................................................................................AAAGGGGCCGTCTCATGGATCAAAACAT............................................................................................................. 28 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0
..............................................................................................................................................................................AATTCGTATATAAAGGGGCCGTCTCAT......................................................................................................................... 27 0 1 1.00 1 0 0 0 0 0 0 0 0 0 1
................................................................................................................................................................................................CCGTCTCATGGATCAAAACATT............................................................................................................ 22 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0
..............................................................................................................................................................ATAGGAGTCTTTTGTAAATTC............................................................................................................................................... 21 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0
.......................................................................................................................................................................................ATAAAGGGGCCGTCTCATG........................................................................................................................ 19 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0
................................................................................................................................................................................TTCGTATATAAAGGGGCCGTCT............................................................................................................................ 22 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................................GGGGCCGTCTCATGGATCAAA................................................................................................................. 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................GTTGATAGGAGTCTTTTGTAAA.................................................................................................................................................. 22 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................CTCATGGATCAAAACATTTTC......................................................................................................... 21 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0
.............................................................................................................................................................................................................CAAAACATTTTCATCGTGACAT............................................................................................... 22 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0
............................................................................................................................................................TGATAGGAGTCTTTTGTAAA.................................................................................................................................................. 20 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................ATAAAGGGGCCGTCTCATGGAT..................................................................................................................... 22 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0
.................................................................................................................................................................................................................................................TCTTTATGTACAAGCAATAC............................................................. 20 0 2 0.50 1 0 1 0 0 0 0 0 0 0 0
...................................................................................................................................................GGGACTTTTTGATAG................................................................................................................................................................ 15 0 2 0.50 1 0 1 0 0 0 0 0 0 0 0
..........................................................................AGGTGTTGGGTACACATGGGA................................................................................................................................................................................................................................... 21 0 2 0.50 1 0 0 0 0 0 1 0 0 0 0
............................................................................................................................................................................................................................................TTCACTCTTTATGTACAA.................................................................... 18 0 2 0.50 1 0 1 0 0 0 0 0 0 0 0
....................................................................................................................................TAAAAGTAAAAACTAGGGACT......................................................................................................................................................................... 21 0 2 0.50 1 0 1 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................................................................GTTCACTCTTTATGTACAAGC.................................................................. 21 0 2 0.50 1 0 1 0 0 0 0 0 0 0 0
....TTATTCGTGTCGGTTTATGCA......................................................................................................................................................................................................................................................................................................... 21 3 7 0.14 1 0 0 0 0 0 0 0 1 0 0
............................................................................................................................................................................................................................................................................................CCTAGCTTGGCTGTAGG..................... 17 2 10 0.10 1 0 0 0 0 0 0 1 0 0 0
......................................................................................................................................AAAGAAAAAACTTGGGAC.......................................................................................................................................................................... 18 2 15 0.07 1 0 0 1 0 0 0 0 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim2 2r:14366626-14366947 - dsi_13074 CACCAAGAAGCACAGCGAAAAACGTCCGGCCGACTAGCGGATAGGCGAAG--------------GTATAG-CTGGAGGAG------------------------------------------------------------------------------------------GTGGGCC--AGTCC-ACAAC--CCATGTGTACCCTT----A-C-CCCTTA-----------------GTCTTGTGATTTTTCAGT-TAGTTATTTAAT-TTTCATTTT-TGATCC----CTG-----------------------AAAAACTATCCTCA-GA---------------------------AAACATTTAAGCATAT----ATTT-CCCCGGCAGAGTACCTAGTTTTGTAAAAGTAGCACTGTAATTTGATGCAA-GTGAG---AAATACATGTTCGTTATGTTAAAAT-ACAGCT-----GC-------CGACTCTT-GGACCGAGCCGACA---TCCGT---------------------GTTGGATGTTGGAGCCA---CC
droSec2 scaffold_1:11173123-11173444 - CACCAAGAAGCACAGCGAAAAACGTCCGGCCGACTAGCGGATAGGCGAAG--------------GTATAG-CTGGAGGAG------------------------------------------------------------------------------------------GTGGGCC--AGTCC-ACAAC--CCATGTGTACCCTT----A-C-CCCTTA-----------------GTCTTGTGATTTTTCAGT-TAGTTATTTAAT-TTTCATTTT-TGATCC----CTG-----------------------AAAAACTATCCTCA-GA---------------------------AAACATTTAAGCATAT----ATTT-CCCCGGCAGAGTACCTAGTTTTGTAAAAGTAGCACTGTAATTTGATGCAA-GTGAG---AAATACATGTTCGTTATGTTAAAAT-ACAGCT-----GC-------CGACTCTT-GGACCGAGCCGACA---TCTGA---------------------GTTGGGTGTTGGAGCCA---CC
dm3 chr2R:13675861-13676179 - CACCAAGAAGCACAGCGAAAAACGTCCGGCCGACTAGCGGATAGGCGGAG--------------GTAGAG-CTGGAGGAG------------------------------------------------------------------------------------------GTGGGCC--AGTCC-ACAAC--CCATGTGTACCCTT----A-C-CCCTTA-----------------GTCTTGTGATTTTTCTGT-TAGTTATTTAAT-TTTCATTCT-TGATCC----ATG-----------------------AAAAACTATCCTCA-GA---------------------------AAACATTTAAGCAGAT----ATTT-CCCCGGCAGAGTACCTAGTTTTGTAAAAGTAGCACTGTAATTTGATGCAA-GTGAG---AAATACATGTTCGTTATGTTAAAAT-ACAGCT-----GC-------CGACTCTT-GGATGGAACCGACA---TCTGA---------------------GTTGGATGTCGGAGCT------
droEre2 scaffold_4845:7903569-7903886 - CACCAAGAAGCACAGCGAAAAACGTCCGGCCGACTAGCGGATAGGCGAAG--------------GAAGAG-CAGGAGGAG------------------------------------------------------------------------------------------GTGGACC--AGTTC-ACAAC--CCATGTGTACCCTC----A-C-CCCTTA-----------------GTCTTGTGATGTTTCAGT-TAGTTATTTAAT-TTTCATTTT-TGAGCC----CC------------------------AAAAGCTATCCTCA-GA---------------------------AAACATGTAAGCAGCT------TT-CCCCGGCAGAGTACCTAGTTTTGTAAAAGTAGCACTGTAATTTTATGCAA-ATGAA---AAATACATGTTCGTTATGTTAAAAT-ACAGCT-----GG-------TGACTCTT-GTACCGAAGAGACG---TCCGA---------------------GTTGGATGTCGGAGCCA----C
droYak3 2R:15507442-15507761 + CACAAAGAAGCACAGCGAAAAACGTCCGGCCGACTAGCGGATAGGCGTGG--------------GAAGAG-CAGGAGGAG------------------------------------------------------------------------------------------GTGGACC--AGTTT-ACAAT--CCATGTGTACCCTC----A-T-CCCTTA-----------------GTCTTGTGATTTTTCAGT-TAGTTATTTAAT-TTTCATTTT-TGAACC----CCA-----------------------AAAAATTATCCTCA-GC---------------------------AAACATGTAAGCGGAT------TT-CCCCGGCAGAGTACCTAGTTTTGTAAAAGTAGCACTGTAATTTTATGCAA-TTGAG---AAATACATGTTCGTTATGTTAAAAC-ACAGCT-----GG-------CGACTCTT-GGACCGCAGAGACA---TCCGC---------------------GTTGGATGTCGTAGCCA---TG
droEug1 scf7180000409672:1430814-1431112 + TACCAAGAAGCACAGCGAAAAGCGTCCAGCGGATTAGCGGAATGGCAGAG------------------------AAGAAG------------------------------------------------------------------------------------------GTGGACC--ACCCC-ACAGC--CCATGTATACCCTCG-T-C-C-CCCTTA-----------------GTCTTGTGATTTTTCAGT-TAGTTATTTAAT-TTTCATTTTTCGAACC----CTC------------------------------------AAAA---------------------------AAACATTTAAGCAGAT------TA-CCCCGGCAGAGTACCTAGTTTTGTAAAAGTAGCACTGTAATTTTATGCAA-GTGAG---AAATACATGTTCGTTATGTTAAAAC-ACAGCA-----GC-------CGTCTCTT-GGATCGCAGGGACC---TCCGA---------------------GTTGGGGGCTAGAA------CC
droBia1 scf7180000301754:2899787-2900129 + TACCAAGAAGCACAGCGAAAAGCGTCCGGCGGACTAGCGGGCTGGCGGCGACGA------------------------------------------------------------------------------------------CTACGGCGGCGGAGAAGGAGGAGTAGGTGGACC--AGCCC-AAAAC--CCATGTACACCCTCGAT-CCC-CACTTA-----------------GTCTTGTGAT-TTTCAGT-TAGTTATTTAAT-TTCCATTTT-CGATCCCCCCA-G----------------------AAAAAGCTATCCTCAAGA---------------------------AAACATGTAAGCGGAT------TTCACCCGGCAGAGTACCTAGTTTTGTAAAAGTAGCACTGTAATTTTATGCAA-GTGAG---AAATACATGTTCGTTATGTTAAAAA-ACAGCA-----GC-------CGGCTCTT-GGACGGCTGAGACC---TCCGT---------------------GTTGGATTTCAAGGCTA----C
droTak1 scf7180000415313:14028-14320 + CACCAAGAAGCACAGCGAAAAGCGTCCGGCGGACTAGCGGAGCGGAG--------------------------------------------------------------------------------------------------------------------------------------------TAT--CCATGTTATCCC------C-C-CCATTA-----------------GTCTTGTGATTTTTCAGT-TAGTTATTTAAT-TTCCATTTT-CGAACC----CTC-----------------------AAAATCTATCCTTT-AAAAGAG----------------------AAACATGTAAGCGGTT----TTCC-CCCCGGCAGAGTACCTAGTTTTGTAAAAGTAGCACTGTAATTTTATGCAA-GTGAG---AAATACATGTTCGTTATGTTAAAAC-ACAGCA-----GC-------TGGCTTTT-GGATCGCAGAGACCTCCTCCGA---------------------GTGGGAAGCTGGTT------TC
droEle1 scf7180000491214:570597-570883 + CACCAAGAAGCATAGCGAAAAGCGTCCAGCGGACTAGCGGATGGGCGAAG--------------GT-------GGAGGAG-----------------------------------------------------------------------------------------------------------AAT--CCATGTACACCCTCGTCGA-C-CCCTTA-----------------GTCTTGTGAT-TTTCAGT-TAGTTATTTAAT-TTCCATTTT-CGATCC----C------------------------------------TCA-GA---------------------------AAACATGTAAGCGTAT------TT-CCTCGGCTGAGTACCTAGTTTTGTAAAAGTAGCACTGTAATTTTATGCAA-GTGAG---AAATACATGTTCGTTATGTTAAAAC-ACAGCC-----GC-------TGGGTCTT-GGATTGTGGACACC---TTCGA---------------------GTTGGCTGTAGAAA------CC
droRho1 scf7180000777956:112808-113121 + CACCAAGAAGCACAGCGAAAAGCGTCCGGCGGACTAGCGGATGGGCGACG--------------GA-------GGAGGAG------------------------------------------------------------------------------------------GTGGGGA--GACCC-AGAAT--CCAAGTACACCCTC----G-CCACCTTA-----------------GTCTTGTGAT-TTTCAGT-TAGTTATTTAAT-TTCCATTTT-CGATCC----CCC-----------------------AAAAACTTCCTTCT-GA---------------------------AATCTTGTAAGCGTAT------TT-CCCCGGCAGAGTACCTAGTTTTGTAAAAGTAGCACTGTAATTTTATGCAA-GTGAG---AAATACATGTTCGTTATGTTAAAAC-ACAGCC-----GC-------TGGCTCTT-GGATCGCGGACACC---TCGGG---------------------ATTGGACGCGGGAGCCA---CC
droFic1 scf7180000453948:1772675-1773001 + CACCAAGAAGCACAGCGAAAAGCGTCCGGCGGACTAGCGGATTGGCGGAG--------------AGGAAG-GAGGAGCAG------------------------------------------------------------------------------------------GTGGCCC--CAACC-ACGAC--CCATGTACACCCGC----G-CCCCCTTA-----------------GTCTTGTGAT-TTTCAGT-TAGTTATTTAAT-TTCAATTTT-CGATCC----CCA----------------ACAACAAAAAAACTACCCTCA-GA---------------------------AAACATGTAAGCTGAT------TC-CCCCGGCAGAGTACCTAGTTTTGTAAAAGTAGCACTGTAATTTTATGCAA-GTGAG---AAATACATGTTCGTTATGTTAAAAG-ACAGCA-----GC-------TGGCTCTT-GCATTGCGGAGGCC---TCCGA---------------------GTTCGGTGCTAAAGCCA---GC
droKik1 scf7180000302385:439957-440305 - CACCAAGAAGCATAGCGAAAAACGTCCGGCGGATTAGCGGGACG-C--------------------------AAACGGAGG----TGGCGACA--------------------------------------------GCGACAACTGCGGCAGCGGCACAGAA-----------------------GAATCACCAT-T--G-CCGT----A-G-CCCTTA-----------------GTCTTGTGAT-TTTCAGT-TAGTTATTTAAT-TTTCATTTC--G---------TCAAAACTCGACTCCTCACCCCC---GACCCGATCCTCA-GA--GAGGGTTCT------C------T---TCCTCGTAAGCGGAG----ATTC-CCTTGGCAGAGTACATAGTCTTGTAAAAGTAGCACTGTAATTTTATGCAAAATGAGAAGAAATACATGTTCGTTATGTTAAAAGAACAGC------GC-------TGGGTTTTAGGATGGC---CACC---TCGGG---------------CTCTGTCTTGG---------------CC
droAna3 scaffold_13266:10510696-10510995 + TACCAAGAAGCACAGCGAAAAGCGTCCGGCGGATTAGCGAGCTC------------------------------CAGATG-------------------------------------------------------------------------------------A----GTGGCCCACA-TCCTAC-AT--CCTGATACATCCTAGAT-C-C-CTTTTA-----------------GTCTTGTGAT-TTTCAGTTTAGTTATTAAAT-TATCATTTC--G--CC---CTTA-----------------------AAAAACTACCCTCG------------------------------AAACATGTAAACGGAG------AG-CCGTGGCAGAGTACATAGTTTTGTAAAAGTAGCACTGTAATTTTATGCAA-GTGAG---AAATACATGTTCGTTATGTTAAAAA-ACTGCT-----GG-------CGGTTCCT-TGATCGCGTTGGTT---AC------------------------ATTGGG------GGCTATGGCA
droBip1 scf7180000396428:932233-932536 + CACCAAGAAGCACAGCGAAAAACGCCCGGCGGATTAGCAAGCT------------------------------TGAGACG-------------------------------------------------------------------------------------A----GTGACCCGCA-TCCTAC-AT--CCTGATACATCCTAGAT-C-C-CCATTA-----------------GTCTTGTGAT-TTTCAGTTTAGTTATTAAAT-TATCATTTT-TCCTC-----TTA-----------------------ATAAACTACCCTCA------------------------------AAACATGTAAACGGAT------AT-CCGTGGCAGAGAACATAGTTTTGTAAAAGTAGCACTGTAATTTTATGCAA-GTGAG---AAATACATGTTCGTTATGTTAACTA-ACTGCT-----GG-------CTGTTCCT-TGATCGCGTTGGTT---AC------------------------GTTGGGAGCTATGGCAA---CC
dp5 3:16488087-16488526 - CACCAAGAAGCACAGCGAAAAACGTCCGGCGGATTAGTGCTGTTTTCATGGCGA-GCCGCCAACAAACAAC-AAACGAAGACGGATGACGAAACCAAACTAAACCCCATCCCATTATTTTCACCCCCCTTCGAGTCTACGCCGAGTGCGACGGAGGG-CGA----------------ACA-AATTAT-TT--C-------------------A-CGCTTAGTCTACGAGTTCTCCCCGTTTTGTGAT-TTTCAAT-TAGCTTTTTAATGTTTTAACTT-CGATTT----TTC------------------------------------A-GT-AGAAAGTTTCGCAATTCTCCCAATTCCAATTTGTAAGGA--TCAGG--ATCCGTAGGAAGGG----TAGTTTTTTAATTGTAGCACTGTAATTTTATGCAA-GAGAG---AAATACAAGTTCGTTACATTAAAAC-ACAACGCCATCGATGGGCGGCGCCTCTT-TAATATCGGACACA---ATCGATGGATGCTCGACGGCCTCAGTGTC------------------G
droPer2 scaffold_4:273546-273985 + CACCAAGAAGCACAGCGAAAAACGTCCGGCGGATTAGTGCTGTGGCCATGGCGA-GCCGCCAACAAACAAC-AAACGAAGACGGATGACGAAACCAAACTAAACCCCATCCCATTATTTTCACCCCCCTTCGAGTCTACGCCGAGTGCGACGGAGGG-CGA----------------ACA-AATTAT-TT--C-------------------A-CGCTTAGTCTACGAGTTCTCCCCGTTTTGTGAT-TTTCAAT-TAGCTTTTTAATGTTTTAACTT-CGATTT----TTC------------------------------------A-GT-AGAAAGTTTCGCAATTCTCCCAATTCCAATTTGTAAGGA--TCAGG--ATCCGTAGGAAGGG----TAGTTTTTTAATTGTAGCACTGTAATTTTATGCAA-GAGAG---AAATACAAGTTCGTTACATTAAAAC-ACAACGCCATCGATGGGTGGCGCCTCTT-TAATAGCGGACACA---ATCGATGGCTGCTCGACGGCCCCAGTGTC------------------G
droWil2 scf2_1100000004558:2103403-2103438 - TACCAGGAAACATTGCGAAAAGCGTCCGGCAGATTA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droVir3 scaffold_12875:16943152-16943188 - TACCAGGAAACACAGCGAAAAGCGTCCGGCCGATTAG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droMoj3 scaffold_6496:11059813-11059872 + CACCAGGAAACACAGCGAAAAGCGTCCGGCTGACTAGTGCAATTGAGGCG--------------AT-------AGGTGAG---------------------------------------------------------------------------------------------G-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droGri2 scaffold_15245:16482655-16482728 - TACCAGGAAACACAGCGAAAAGCGTCCGGCTGATTAGTCCAACGATGCGGAGGAT---------GAAGAT-GTGGAGGAG------------------------------------------------------------------------------------------GAGG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
CACCAAGAAGCACAGCGAAAAACGTCCGGCCGACTAGCGGATAGGCGAAG--------------GTATAG-CTGGAGGAG------------------------------------------------------------------------------------------GTGGGCC--AGTCC-ACAAC--CCATGTGTACCCTT----A-C-CCCTTA-----------------GTCTTGTGATTTTTCAGT-TAGTTATTTAAT-TTTCATTTT-TGATCC----CTG-----------------------AAAAACTATCCTCA-GA---------------------------AAACATTTAAGCATAT----ATTT-CCCCGGCAGAGTACCTAGTTTTGTAAAAGTAGCACTGTAATTTGATGCAA-GTGAG---AAATACATGTTCGTTATGTTAAAAT-ACAGCT-----GC-------CGACTCTT-GGACCGAGCCGACA---TCCGT---------------------GTTGGATGTTGGAGCCA---CCSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
................................................................................................................................................................................................................................................................................................................................................................................................................AGTTTTGTAAAAGTAGCACTG..............................................................................................................................................2114.00400002000101000000
.............................................................................................................................................................................................................................................................................................................................................................................................TT-CCCCGGCAGAGTACCTAGT................................................................................................................................................................2114.00400000100000003000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................TGCAA-GTGAG---AAATACATGTTCGTTA........................................................................................................2614.00400000011101000000
..............................................................................................................................................................................................................................................................................................................................................................................TAAGCATAT----ATTT-CCCCGGCA...........................................................................................................................................................................2114.00400000001000003000
.....................................................................................................................................................................................................................................................................................................................................................................................................................TGTAAAAGTAGCACTGTAATTTGATGCA..................................................................................................................................2814.00400000031000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................CTGTAATTTGATGCAA-GTGAG---........................................................................................................................2114.00400003000001000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................TAAAAGTAGCACTGTAATTTG.......................................................................................................................................2114.00400000011100001000
...................................................................................................................................................................................................................................................................................................................................................................................................................................TGTAATTTGATGCAA-GTGAG---A.......................................................................................................................2113.00300001000200000000
........................................................................................................................................................................................................................................................................................................................................................................................................................AAAAGTAGCACTGTAATTTGA......................................................................................................................................2113.00300000001200000000
.....................................................................................................................................................................................................................................................................................................................................CTCA-GA---------------------------AAACATTTAAGCATA.............................................................................................................................................................................................2113.00300000000100002000
..................................................................................................................................................................................................................................................................................................................................................................................................................TTTTGTAAAAGTAGCACTGTA............................................................................................................................................2113.00300000000300000000
...............................................................................................................................................................................................................................................................................................................................................................................AAGCATAT----ATTT-CCCCGGCAG..........................................................................................................................................................................2112.00200001000000001000
...................................................................................................................................................................................................................................................................................................................................................................................................................TTTGTAAAAGTAGCACTGTAATTTGA......................................................................................................................................2612.00200000002000000000
..............................................................................................................................................................................................................................................................................................................................................................................TAAGCATAT----ATTT-CCCCGGCAA..........................................................................................................................................................................2212.00200000000000002000
.........................................................................................................................................................................................................................................................................................................................................................................................................................AAAGTAGCACTGTAATTTGATA....................................................................................................................................2212.00200000000200000000
.................................................................................................................................................................................................................................................................................................................................................................................................CCCGGCAGAGTACCTAGTTTT.............................................................................................................................................................2112.00200001000000001000
............................................................................................................................................................................................................................................................................................................................................................................TTTAAGCATAT----ATTT-CCCCGG.............................................................................................................................................................................2112.00200000000000002000
.......................................................................................................................................................................................................................................................................................................................................................................................................................TAAAAGTAGCACTGTAATTTGATGCA..................................................................................................................................2612.00200000002000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................TTTGTAAAAGTAGCACTGTAA...........................................................................................................................................2112.00200002000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................TAGTTTTGTAAAAGTAGCACT...............................................................................................................................................2112.00200000000200000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................TGCAA-GTGAG---AAATACATGTTCG...........................................................................................................2312.00200002000000000000
..............................................................................................................................................................................................................................................................................................................................................................................TAAGCATAT----ATTT-CCCCGGCATT.........................................................................................................................................................................2312.00200000000000002000
..................................................................................................................................................................................................................................................................................TTTT-TGATCC----CTG-----------------------AAAAACT.................................................................................................................................................................................................................................................2021.50321000000000000000
........................................................................................................................................................................................................ACCCTT----A-C-CCCTTA-----------------GTCTTGT...............................................................................................................................................................................................................................................................................................................................2111.00100010000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................TAATTTGATGCAA-GTGAG---A.......................................................................................................................1911.00100000000100000000
..........................................................................................................................................................................................................................................................................................................................................................................CATTTAAGCATAT----ATTT-CCCC...............................................................................................................................................................................2111.00100001000000000000
..................AAAACGTCCGGCCGACTAGCGGATA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.00100000001000000000
....................................................................................................................................................................................................................................................................................................................................................................................TAT----ATTT-CCCCGGCAGAGTG......................................................................................................................................................................2011.00100000000001000000
....................................................................................................................................................................................................................................................................................................................................................................................................................TTGTAAAAGTAGCACTGTAATTTGATGCA..................................................................................................................................2911.00100010000000000000
...........................................................................................................................................................................................................................................................................................................................AAAAACTATCCTCA-GA---------------------------AAACA.......................................................................................................................................................................................................2111.00100000000000001000
.................................................................................................................................................................................................................................................................................ATTTT-TGATCC----CTG-----------------------AAAAACT.................................................................................................................................................................................................................................................2121.00200000000002000000
............................................................................................................................................................................................................................................................................................................................................................................................................ACCTAGTTTTGTAAAAGT.....................................................................................................................................................1811.00100000010000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................TAGTTTTGTAAAAGTAGCACTGTAATT.........................................................................................................................................2711.00100000001000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................AAAAGTAGCACTGTAATTTG.......................................................................................................................................2011.00100000000000001000
............................................................................................................................................................................................................................................................................................................................................................................................TTT-CCCCGGCAGAGTACCTAGT................................................................................................................................................................2211.00100000000000001000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................TAATTTGATGCAA-GTGAG---AAA.....................................................................................................................2111.00100001000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................TTTGTAAAAGTAGCACTGTAATTTGAT.....................................................................................................................................2711.00101000000000000000
....................................................................................................................................................................................................................................................................................................................................CCTCA-GA---------------------------AAACATTTAAGCA...............................................................................................................................................................................................2011.00100000100000000000
.......................................................................................................................................................................................................................................................................................................................................CA-GA---------------------------AAACATTTAAGCATAT----A.......................................................................................................................................................................................2111.00100001000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................GTAAAAGTAGCACTGTAATTTGATGCAA-G...............................................................................................................................2911.00100000001000000000
..............................................................................................................................................................................................................................................................................................................................................................................TAAGCATAT----ATTT-CCCCGGCAT..........................................................................................................................................................................2211.00100000000000001000
................................................................................................................................................................................................................................................................................................................................................................................AGCATAT----ATTT-CCCCGGCAG..........................................................................................................................................................................2011.00100000000000010000
..........................CGGCCGACTAGCGGATAGGCGA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.00100000000001000000
.............................................................................................................................................................................................................................................................................................................................................................................TTAAGCATAT----ATTT-CCCCGGC............................................................................................................................................................................2111.00100000000000001000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................TTGATGCAA-GTGAG---AAATACATGTT.............................................................................................................2511.00100000000001000000
.............................................CGAAG--------------GTATAG-CTGGAGGA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00100001000000000000
............................................................................................................................................................................................................................................................................................................................................................................................TTT-CCCCGGCAGAGTACCTAGTAA..............................................................................................................................................................2411.00100000010000000000
....................................................................................................................................................................................................................................................................................................................................................................................TAT----ATTT-CCCCGGCAGAGTT......................................................................................................................................................................2011.00100000000000001000
..........................................................................................................................................................................................................................................................................AT-TTTCATTTT-TGATCC----CTG-----------------------A.......................................................................................................................................................................................................................................................2121.00200002000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................AG---AAATACATGTTCGTTATGTTAAA.................................................................................................2511.00100000000100000000
.....................................................................................................................................................................................................................................................................................................................................CTCA-GA---------------------------AAACATTTAAGCAT..............................................................................................................................................................................................2011.00100001000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................AGTAGCACTGTAATTTGATG....................................................................................................................................2011.00100000010000000000
..................................TAGCGGATAGGCGAAG--------------GTATAG-CT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.00100000000000010000
....................................................................................................................................................................................................................................................................................................................................................................................TAT----ATTT-CCCCGGCAGAGTAC.....................................................................................................................................................................2111.00100000000000001000
............................................................................................................................................................................................................................................................................................................................................................................................................................................ATGCAA-GTGAG---AAATACATGTTCGTTA........................................................................................................2711.00100000001000000000
............................................................................................................................................................................................................................................................................................................................................................................................TTT-CCCCGGCAGAGTACCTAG.................................................................................................................................................................2111.00100000000000001000
...................................................................................................................................................................................................................................................................................................................................................................................................CGGCAGAGTACCTAGTTT..............................................................................................................................................................1811.00100001000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................AAAGTAGCACTGTAATTTGATGCAA-GTG.............................................................................................................................2811.00100000000001000000
................................ACTAGCGGATAGGCGAAG--------------GTA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100000000001000000
.....................................................................................................................................................................................................................................................................................................................................CTCA-GA---------------------------AAACATTTAAGCA...............................................................................................................................................................................................1911.00100001000000000000
..................................................................................................................................................................................................................................................................................................................................................................................CATAT----ATTT-CCCCGGCAGAG........................................................................................................................................................................2011.00100001000000000000
..................................................................................................................................................................................................................................................................................TTTT-TGATCC----CTG-----------------------AAAAACTA................................................................................................................................................................................................................................................2121.00200002000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................CCCGGCAGAGTACCTAGTTT..............................................................................................................................................................2011.00100000000000001000
....................................................................................................................................................................................................................................................................................................................................................................................................................TTGTAAAAGTAGCACTGTAAT..........................................................................................................................................2111.00100000000000001000
....................................................................................................................................................................................................................................................................................................................................................................................................................TTGTAAAAGTAGCACTGT.............................................................................................................................................1811.00101000000000000000
...................................................................................................................................................................................................................................................................................TTT-TGATCC----CTG-----------------------AAAAACTATCCTCA-.........................................................................................................................................................................................................................................2611.00100010000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................AAAAGTAGCACTGTAATTTGATGCA..................................................................................................................................2511.00100000000001000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................AGTAGCACTGTAATTTGATGCAA-GTGAG---........................................................................................................................2811.00100000010000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................ACTGTAATTTGATGCAA-GTGA............................................................................................................................2111.00100000000100000000
.................................CTAGCGGATAGGCGAAG--------------GTAT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00101000000000000000
.............................................................................................................................................................................................................................................................................................................................AAACTATCCTCA-GA---------------------------AAACATT.....................................................................................................................................................................................................2111.00100001000000000000
.................................................................................................................................................................................................................................................................................................CTG-----------------------AAAAACTATCCTCA-GA---------------------------AA..........................................................................................................................................................................................................2111.00100001000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................TTTGTAAAAGTAGCACTGTAT...........................................................................................................................................2111.00100000000000001000
........................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGATGCAA-GTGAG---AAATACATG...............................................................................................................2411.00100000000001000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAG---AAATACATGTTCGT..........................................................................................................1921.00202000000000000000
...................................................................................................................................................................................................................................................................................................G-----------------------AAAAACTATCCTCA-GA---------------------------AAAC........................................................................................................................................................................................................2111.00100001000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................AAGTAGCACTGTAATTTGATG....................................................................................................................................2111.00100000010000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................TTTTGTAAAAGTAGCACTGTAATT.........................................................................................................................................2411.00100000010000000000
....................................................................................................................................................................................................................................................................................TT-TGATCC----CTG-----------------------AAAAACTA................................................................................................................................................................................................................................................1931.00300003000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................CTGTAATTTGATGCAA-GTGA............................................................................................................................2011.00100001000000000000
..............GCGAAAAACGTCCGGCCGACTAGC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.00100010000000000000
.........................................................................................................................................................................................................................................................................AAT-TTTCATTTT-TGATCC----C.................................................................................................................................................................................................................................................................................1911.00100001000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACTCTT-GGACCGAGCCGACA---................................................2111.00100000000000001000
..............................................................................................................................................................................................................................................................................................................................................................................TAAGCATAT----ATTT-CCCCGGTTT..........................................................................................................................................................................2211.00100000000000001000
................................................................................................................................................................................................................................................................................................................................................................................AGCATAT----ATTT-CCCCGGCAGA.........................................................................................................................................................................2111.00100000001000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................AAAGTAGCACTGTAATTTGA......................................................................................................................................2011.00100000001000000000
............................................................................................................................................................................................................................................................................................................................AAAACTATCCTCA-GA---------------------------AAACAT......................................................................................................................................................................................................2111.00100010000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................AGTAGCACTGTAATTTGATGC...................................................................................................................................2111.00100000000010000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGATGCAA-GTGAG---AAATACATGTTC............................................................................................................2711.00100000000001000000
......................................................................................................................................................................................................................................................................................................................................................................................T----ATTT-CCCCGGCAGAGTACCT...................................................................................................................................................................2111.00100000000001000000
...................................................................................................................................................................................................................................................................................................................................TCCTCA-GA---------------------------AAACATTTAAGCAT..............................................................................................................................................................................................2211.00100000000000001000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................TAATTTGATGCAA-GTGAG---AAATACATG...............................................................................................................2711.00100000000001000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................AA-GTGAG---AAATACATGTTCGT..........................................................................................................2121.00200002000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T-ACAGCT-----GC-------CGACTCTT-GG...............................................................1911.00110000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................GCAA-GTGAG---AAATACATG...............................................................................................................1811.00100001000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................CCTAGTTTTGTAAAAGT.....................................................................................................................................................1711.00100000010000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAG---AAATACATGTTCGTTATGTTAAAA................................................................................................2811.00100000000010000000
........AGCACAGCGAAAAACGTCCGG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100000010000000000
...........................................................................................................................................................................................................................................................................T-TTTCATTTT-TGATCC----CTG-----------------------A.......................................................................................................................................................................................................................................................2021.00200002000000000000
......................................................................................................................................................................................................................................................................................................................................TCA-GA---------------------------AAACATTTAAGCATAT----A.......................................................................................................................................................................................2211.00100000100000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATACATGTTCGTTATGTTA...................................................................................................2111.00100000000001000000
.....................................................................................................................................................................................................................................................................................................................................................................................AT----ATTT-CCCCGGCAGAGTACC....................................................................................................................................................................2111.00100000000010000000
...............................................................................................................................................................................................................................................................................................................................................................................................................TAGTTTTGTAAAAGTAGCACTGTA............................................................................................................................................2411.00100000000001000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................TAAAAGTAGCACTGTAATTT........................................................................................................................................2011.00100000000000001000
...................................................................................................................................................................................................................................................TGATTTTTCAGT-TAGTTATTTA.........................................................................................................................................................................................................................................................................................................2211.00100000000100000000
...................................................................................................................................................................................................................................................................................................................................................................................................................TTTGTAAAAGTAGCACTGA.............................................................................................................................................1911.00100000000000001000
......................................................................................................................................................................................................................CCCTTA-----------------GTCTTGTGATTTTTCAGT-...................................................................................................................................................................................................................................................................................................................2411.00100000010000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGATGCAA-GTGAG---AAATAC..................................................................................................................2111.00100000000001000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................CAA-GTGAG---AAATACATGTTCGT..........................................................................................................2220.50101000000000000000
................................................................................................................................................................................................................................................................................CATTTT-TGATCC----CTG-----------------------AAAAAAA.................................................................................................................................................................................................................................................2220.50100000000000001000
................................................................................................................................................................................................................................................................................CATTTT-TGATCC----CTG-----------------------AAAAACT.................................................................................................................................................................................................................................................2220.50101000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................CAA-GTGAG---AAATACATGTTCGTTATGT.....................................................................................................2720.50100000001000000000
...................................................................................................................................................................................................................................................................................TTT-TGATCC----CTG-----------------------AAAAACTATCC.............................................................................................................................................................................................................................................2320.50100000001000000000
...................................................................................................................................................................................................................................................................................TTT-TGATCC----CTG-----------------------AAAAACTAT...............................................................................................................................................................................................................................................2120.50100000000001000000
....................................................................................................................................................................................................................................................................................TT-TGATCC----CTG-----------------------AAAAACTATC..............................................................................................................................................................................................................................................2120.50100000001000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAG---AAATACATGTTCGTTATGTT....................................................................................................2420.50100000001000000000
..............................................................................................................................................................................................................................................................................................................................................................................................T-CCCCGGCAGAGTACC....................................................................................................................................................................1620.50100000000001000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................AA-GTGAG---AAATACATGTTCGTTA........................................................................................................2320.50100000001000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................AATACATGTTCGTTATGT.....................................................................................................1820.50101000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................TTT-CCCCGGCAGAGTACC....................................................................................................................................................................1820.50100000000001000000
.........................................................................................................................................................................................................................................................TTCAGT-TAGTTATTTA.........................................................................................................................................................................................................................................................................................................1630.33100000010000000000
..................................................................ATAG-CTGGAGGAG------------------------------------------------------------------------------------------GTGGGTT--T...............................................................................................................................................................................................................................................................................................................................................................................................2170.14100000000000001000
droSec2
CACCAAGAAGCACAGCGAAAAACGTCCGGCCGACTAGCGGATAGGCGAAG--------------GTATAG-CTGGAGGAG------------------------------------------------------------------------------------------GTGGGCC--AGTCC-ACAAC--CCATGTGTACCCTT----A-C-CCCTTA-----------------GTCTTGTGATTTTTCAGT-TAGTTATTTAAT-TTTCATTTT-TGATCC----CTG-----------------------AAAAACTATCCTCA-GA---------------------------AAACATTTAAGCATAT----ATTT-CCCCGGCAGAGTACCTAGTTTTGTAAAAGTAGCACTGTAATTTGATGCAA-GTGAG---AAATACATGTTCGTTATGTTAAAAT-ACAGCT-----GC-------CGACTCTT-GGACCGAGCCGACA---TCTGA---------------------GTTGGGTGTTGGAGCCA---CCSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
...............................................................................................................................................................................................................................................CTTGTGATTTTTCAGT-TA.................................................................................................................................................................................................................................................................................................................1812.0020020
...........................GGCCGACTAGCGGATAGGCGAAG--------------GT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2512.0020110
..................................................................ATAG-CTGGAGGAG------------------------------------------------------------------------------------------GTGGGC...................................................................................................................................................................................................................................................................................................................................................................................................1911.0010100
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTGA---------------------GTTGGGTGTTGGAGCC......2111.0010100
..........................................................................................................................................................................................................................................................................................................................................................................................................................AAGTAGCACTGTAATTTGATGCAA-GTG.............................................................................................................................2711.0010100
..............................................................................................................................................................................................................................................................................................................................................................................TAAGCATAT----ATTT-CCCCGGC............................................................................................................................................................................2011.0011000
...........................................................................................................................................................................................................................................................................................................................................................................................................................AGTAGCACTGTAATTTGATGCAA-................................................................................................................................2311.0010010
.......................................................................................................................................................................................................................................................................................................................................................................................................................TAAAAGTAGCACTGTAATTTG.......................................................................................................................................2111.0010100
........AGCACAGCGAAAAACGTCCGGC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010100
......................................................................................................................................................................................................................................................................................................................................................................................................CAGAGTACCTAGTTTTGTAAA........................................................................................................................................................2111.0010100
.................................................................................................................................................................................................CATGTGTACCCTT----A-C-CCCTTA-----------------GT....................................................................................................................................................................................................................................................................................................................................2311.0010001
..CCAAGAAGCACAGCGAAAAACGT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010001
.ACCAAGAAGCACAGCGAAAAAC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0011000
............................................................................................................................................................................................................................................................................................................................................................................................TTT-CCCCGGCAGAGTACCTAGT................................................................................................................................................................2211.0010100
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGTTATGTTAAAAT-ACAGCT-----...................................................................................2111.0011000
................................................................................................................................................................................................................................................................................................................................................................................................................AGTTTTGTAAAAGTAGCACTGT.............................................................................................................................................2211.0011000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACTCTT-GGACCGAGCCGACA---T...............................................2211.0010100
................................................................................................................................................................................................................................................................................................................................................................................................................AGTTTTGTAAAAGTAGCACTG..............................................................................................................................................2111.0010100
......................................................................................................................................................................................................................................................................................................................................................................................T----ATTT-CCCCGGCAGAGTACCT...................................................................................................................................................................2111.0010100
................................................................................................................................................................................................................................................................................................................................................................................................................................................AA-GTGAG---AAATACATGTTCGTTATGTT....................................................................................................2711.0011000
...................AAACGTCCGGCCGACTAGCGG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010001
...........ACAGCGAAAAACGTCCGGCCGT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010100
............................................................................................................................................................................................................................................................................................................................................................................................TTT-CCCCGGCAGAGTACCTAG.................................................................................................................................................................2111.0010010
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAGCT-----GC-------CGACTCTT-GGACC............................................................2111.0011000
...............................GACTAGCGGATAGGCGAAG--------------GT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010100
................................................AG--------------GTATAG-CTGGAGGAG------------------------------------------------------------------------------------------GT.......................................................................................................................................................................................................................................................................................................................................................................................................1911.0010010
.....................................................................................................................................................................................................................................................................................................................................................................................................GCAGAGTACCTAGTTTTGTA..........................................................................................................................................................2011.0010010
.................................................................................................................................................................................................................................................................................................................................TATCCTCA-GA---------------------------AAACATTTAAGC................................................................................................................................................................................................2211.0011000
.................................................................TATAG-CTGGAGGAG------------------------------------------------------------------------------------------GTGGGCC--AGTC............................................................................................................................................................................................................................................................................................................................................................................................2511.0010100
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGACA---TCTGA---------------------GTTGGGTGTTG...........2111.0010100
...................................................................................................................................................................................................................................................................................TTT-TGATCC----CTG-----------------------AAAAACT.................................................................................................................................................................................................................................................1920.5010010
....................................................................................................................................................................................................................................................................................TT-TGATCC----CTG-----------------------AAAAACTATC..............................................................................................................................................................................................................................................2120.5011000
dm3
CACCAAGAAGCACAGCGAAAAACGTCCGGCCGACTAGCGGATAGGCGGAG--------------GTAGAG-CTGGAGGAG------------------------------------------------------------------------------------------GTGGGCC--AGTCC-ACAAC--CCATGTGTACCCTT----A-C-CCCTTA-----------------GTCTTGTGATTTTTCTGT-TAGTTATTTAAT-TTTCATTCT-TGATCC----ATG-----------------------AAAAACTATCCTCA-GA---------------------------AAACATTTAAGCAGAT----ATTT-CCCCGGCAGAGTACCTAGTTTTGTAAAAGTAGCACTGTAATTTGATGCAA-GTGAG---AAATACATGTTCGTTATGTTAAAAT-ACAGCT-----GC-------CGACTCTT-GGATGGAACCGACA---TCTGA---------------------GTTGGATGTCGGAGCT------SizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
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CME-W2		V086
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Ovary		V0882
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Ovary		V0892
Ovary		V090
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fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
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droEre2
CACCAAGAAGCACAGCGAAAAACGTCCGGCCGACTAGCGGATAGGCGAAG--------------GAAGAG-CAGGAGGAG------------------------------------------------------------------------------------------GTGGACC--AGTTC-ACAAC--CCATGTGTACCCTC----A-C-CCCTTA-----------------GTCTTGTGATGTTTCAGT-TAGTTATTTAAT-TTTCATTTT-TGAGCC----CC------------------------AAAAGCTATCCTCA-GA---------------------------AAACATGTAAGCAGCT------TT-CCCCGGCAGAGTACCTAGTTTTGTAAAAGTAGCACTGTAATTTTATGCAA-ATGAA---AAATACATGTTCGTTATGTTAAAAT-ACAGCT-----GG-------TGACTCTT-GTACCGAAGAGACG---TCCGA---------------------GTTGGATGTCGGAGCCA----CSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
...........................................................................................................................................................................................................................................................................................................................AAAAGCTATCCTCA-GA---------------------------AAACAT......................................................................................................................................................................................................2211.0011000000
......................................................................................................................................................................................................GTACCCTC----A-C-CCCTTA-----------------GTCTTGTGAT............................................................................................................................................................................................................................................................................................................................2611.0011000000
......................................GGATAGGCGAAG--------------GAAGAG-C...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000100
..........................CGGCCGACTAGCGGATAGG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0011000000
................................................................GAAGAG-CAGGAGGAG------------------------------------------------------------------------------------------GTG......................................................................................................................................................................................................................................................................................................................................................................................................1811.0011000000
.......................................................................................................................................................................................................................................................................................................................................................................................................AGAGTACCTAGTTTTGTA..........................................................................................................................................................1811.0010000010
......GAAGCACAGCGAAAAACGTC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010100000
.................................................................AAGAG-CAGGAGGAG------------------------------------------------------------------------------------------GTGGACC--AGT.............................................................................................................................................................................................................................................................................................................................................................................................2411.0010000100
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.........................CCGGCCGACTAGCGGATA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0011000000
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.................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGTTCGTTATGTTAAAAT-ACA...........................................................................................2211.0011000000
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.................................................................................................................................................................................................................................................TGTGATGTTTCAGT-TAGTTATTT..........................................................................................................................................................................................................................................................................................................2311.0010000100
........AGCACAGCGAAAAACGTCC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000100
...........................................................................................................................................................................................AAC--CCATGTGTACCCTC----A-C-CCCTT........................................................................................................................................................................................................................................................................................................................................................2411.0011000000
........AGCACAGCGAAAAACGTCCGGCC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0011000000
...................................................................................................................................................................................................................................................................................................................................................................................................................TTTGTAAAAGTAGCACTGTAAT..........................................................................................................................................2211.0010000100
........................................................................................................................................................................................................................................................................................................................................................................AACATGTAAGCAGCT------TT-CCCC...............................................................................................................................................................................2111.0011000000
........................................................................................................................................................................................................................................................................................................................................................................AACATGTAAGCAGCT------TT-CCCCGGCAGA.........................................................................................................................................................................2711.0011000000
.............AGCGAAAAACGTCCGGCCGACTAGC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000100
.......................................................................................................................................................................................................................................................................................................................................................................................................AGAGTACCTAGTTTTGTAA.........................................................................................................................................................1911.0010000010
droYak3
CACAAAGAAGCACAGCGAAAAACGTCCGGCCGACTAGCGGATAGGCGTGG--------------GAAGAG-CAGGAGGAG------------------------------------------------------------------------------------------GTGGACC--AGTTT-ACAAT--CCATGTGTACCCTC----A-T-CCCTTA-----------------GTCTTGTGATTTTTCAGT-TAGTTATTTAAT-TTTCATTTT-TGAACC----CCA-----------------------AAAAATTATCCTCA-GC---------------------------AAACATGTAAGCGGAT------TT-CCCCGGCAGAGTACCTAGTTTTGTAAAAGTAGCACTGTAATTTTATGCAA-TTGAG---AAATACATGTTCGTTATGTTAAAAC-ACAGCT-----GG-------CGACTCTT-GGACCGCAGAGACA---TCCGC---------------------GTTGGATGTCGTAGCCA---TGSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
.............................................................................................................................................................................................................................................................................................................................................................................GTAAGCGGAT------TT-CCCCGGCAGA.........................................................................................................................................................................2212.00201000010000
..............................CGACTAGCGGATAGGCGTGG--------------GAAGA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.00100000010000
..........................................................................................................................................................................................................................................................................................................................................................................CATGTAAGCGGAT------TT-CCCCGG.............................................................................................................................................................................2111.00100000010000
.............................................CGTGG--------------GAAGAG-CAGGAGGAG------------------------------------------------------------------------------------------.........................................................................................................................................................................................................................................................................................................................................................................................................2011.00101000000000
......GAAGCACAGCGAAAAACGTCCGGCCGACA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2911.00100000000001
.................................................................................................................................................................................................................................................................................................................................TATCCTCA-GC---------------------------AAACATGTAAGCGG..............................................................................................................................................................................................2411.00100000010000
....................................................................................................................................................................................................................................................................................................................................................................................................................................GTAATTTTATGCAA-TTGAG---A.......................................................................................................................2011.00101000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................AGAGTACCTAGTTTTGTAAA........................................................................................................................................................2011.00100000010000
.........................................................................................................................................................................................................................................................................AAT-TTTCATTTT-TGAACC----CCA-----------------------........................................................................................................................................................................................................................................................2111.00101000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................GCAGAGTACCTAGTTTTGT...........................................................................................................................................................1911.00100000010000
....................................................................................................................................................................................GTTT-ACAAT--CCATGTGTACCCTC----A-T-CCC..........................................................................................................................................................................................................................................................................................................................................................2811.00101000000000
...AAAGAAGCACAGCGAAAAAC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00100000010000
......GAAGCACAGCGAAAAACGTCC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100000010000
...............................GACTAGCGGATAGGCGTGG--------------GAAGAG-C...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.00100000010000
........................................................................................................................................................................................................................................................................................................................................................................................................................AAAAGTAGCACTGTAATTTTATGCAA-TT..............................................................................................................................2811.00101000000000
................................................................GAAGAG-CAGGAGGAG------------------------------------------------------------------------------------------GTG......................................................................................................................................................................................................................................................................................................................................................................................................1811.00100100000000
....................................................................AG-CAGGAGGAG------------------------------------------------------------------------------------------GTGGACC--................................................................................................................................................................................................................................................................................................................................................................................................1811.00100000010000
....................................................................................................................................................................................................................................................................................................................................................................................................................TTGTAAAAGTAGCACTGTAAT..........................................................................................................................................2111.00101000000000
...............................................................................................................................................................................................................................................CTTGTGATTTTTCAGT-TAGTT..............................................................................................................................................................................................................................................................................................................2111.00101000000000
...................................................................................................................................................................................................................................................................................................................................TCCTCA-GC---------------------------AAACATGTAAGCGGAT------T.....................................................................................................................................................................................2511.00101000000000
.............................................................................................................................................................................GACC--AGTTT-ACAAT--CCATGTGTACCCT......................................................................................................................................................................................................................................................................................................................................................................2711.00100100000000
......................................................................................................................................................................................................................................................................................................................................................................................................................GTAAAAGTAGCACTGTAATT.........................................................................................................................................2011.00101000000000
.............................................................................................................................................................................................................................................................................................................................................................................GTAAGCGGAT------TT-CCCCGGC............................................................................................................................................................................1911.00101000000000
.........................................................................................................................................................................................................................................................................................................................................................................ACATGTAAGCGGAT------TT-CCCCG..............................................................................................................................................................................2111.00101000000000
...............................GACTAGCGGATAGGCGTGG--------------G..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00100000010000
....................AACGTCCGGCCGACTAGCG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00100000010000
............................................GCGTGG--------------GAAGAG-CAGGAGGA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00100000010000
............................................GCGTGG--------------GAAGAG-CAGGAGGAG------------------------------------------------------------------------------------------GTG......................................................................................................................................................................................................................................................................................................................................................................................................2411.00100000010000
...........................GGCCGACTAGCGGATAGGCGTGG--------------...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.00100000010000
................................................................................................................................................................................................................................................................................................................................................................................AGCGGAT------TT-CCCCGGCAGAGT.......................................................................................................................................................................2111.00101000000000
..CAAAGAAGCACAGCGAAAA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00100000010000
............................................................................................................................................................................................................................................................................................................................................................................................................................GTAGCACTGTAATTTTATGC...................................................................................................................................2011.00101000000000
...............................................................................................................................................................................................................................................................................................................................................................................AAGCGGAT------TT-CCCCGGCAGAGTACCTA..................................................................................................................................................................2711.00101000000000
.....AGAAGCACAGCGAAAAACGT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00100000010000
droEug1
TACCAAGAAGCACAGCGAAAAGCGTCCAGCGGATTAGCGGAATGGCAGAG------------------------AAGAAG------------------------------------------------------------------------------------------GTGGACC--ACCCC-ACAGC--CCATGTATACCCTCG-T-C-C-CCCTTA-----------------GTCTTGTGATTTTTCAGT-TAGTTATTTAAT-TTTCATTTTTCGAACC----CTC------------------------------------AAAA---------------------------AAACATTTAAGCAGAT------TA-CCCCGGCAGAGTACCTAGTTTTGTAAAAGTAGCACTGTAATTTTATGCAA-GTGAG---AAATACATGTTCGTTATGTTAAAAC-ACAGCA-----GC-------CGTCTCTT-GGATCGCAGGGACC---TCCGA---------------------GTTGGGGGCTAGAA------CCSizeHit CountTotal NormTotal
No Reads
droBia1
TACCAAGAAGCACAGCGAAAAGCGTCCGGCGGACTAGCGGGCTGGCGGCGACGA------------------------------------------------------------------------------------------CTACGGCGGCGGAGAAGGAGGAGTAGGTGGACC--AGCCC-AAAAC--CCATGTACACCCTCGAT-CCC-CACTTA-----------------GTCTTGTGAT-TTTCAGT-TAGTTATTTAAT-TTCCATTTT-CGATCCCCCCA-G----------------------AAAAAGCTATCCTCAAGA---------------------------AAACATGTAAGCGGAT------TTCACCCGGCAGAGTACCTAGTTTTGTAAAAGTAGCACTGTAATTTTATGCAA-GTGAG---AAATACATGTTCGTTATGTTAAAAA-ACAGCA-----GC-------CGGCTCTT-GGACGGCTGAGACC---TCCGT---------------------GTTGGATTTCAAGGCTA----CSizeHit CountTotal NormTotal
No Reads
droTak1
CACCAAGAAGCACAGCGAAAAGCGTCCGGCGGACTAGCGGAGCGGAG--------------------------------------------------------------------------------------------------------------------------------------------TAT--CCATGTTATCCC------C-C-CCATTA-----------------GTCTTGTGATTTTTCAGT-TAGTTATTTAAT-TTCCATTTT-CGAACC----CTC-----------------------AAAATCTATCCTTT-AAAAGAG----------------------AAACATGTAAGCGGTT----TTCC-CCCCGGCAGAGTACCTAGTTTTGTAAAAGTAGCACTGTAATTTTATGCAA-GTGAG---AAATACATGTTCGTTATGTTAAAAC-ACAGCA-----GC-------TGGCTTTT-GGATCGCAGAGACCTCCTCCGA---------------------GTGGGAAGCTGGTT------TCSizeHit CountTotal NormTotal
No Reads
droEle1
CACCAAGAAGCATAGCGAAAAGCGTCCAGCGGACTAGCGGATGGGCGAAG--------------GT-------GGAGGAG-----------------------------------------------------------------------------------------------------------AAT--CCATGTACACCCTCGTCGA-C-CCCTTA-----------------GTCTTGTGAT-TTTCAGT-TAGTTATTTAAT-TTCCATTTT-CGATCC----C------------------------------------TCA-GA---------------------------AAACATGTAAGCGTAT------TT-CCTCGGCTGAGTACCTAGTTTTGTAAAAGTAGCACTGTAATTTTATGCAA-GTGAG---AAATACATGTTCGTTATGTTAAAAC-ACAGCC-----GC-------TGGGTCTT-GGATTGTGGACACC---TTCGA---------------------GTTGGCTGTAGAAA------CCSizeHit CountTotal NormTotal
No Reads
droRho1
CACCAAGAAGCACAGCGAAAAGCGTCCGGCGGACTAGCGGATGGGCGACG--------------GA-------GGAGGAG------------------------------------------------------------------------------------------GTGGGGA--GACCC-AGAAT--CCAAGTACACCCTC----G-CCACCTTA-----------------GTCTTGTGAT-TTTCAGT-TAGTTATTTAAT-TTCCATTTT-CGATCC----CCC-----------------------AAAAACTTCCTTCT-GA---------------------------AATCTTGTAAGCGTAT------TT-CCCCGGCAGAGTACCTAGTTTTGTAAAAGTAGCACTGTAATTTTATGCAA-GTGAG---AAATACATGTTCGTTATGTTAAAAC-ACAGCC-----GC-------TGGCTCTT-GGATCGCGGACACC---TCGGG---------------------ATTGGACGCGGGAGCCA---CCSizeHit CountTotal NormTotal
No Reads
droFic1
CACCAAGAAGCACAGCGAAAAGCGTCCGGCGGACTAGCGGATTGGCGGAG--------------AGGAAG-GAGGAGCAG------------------------------------------------------------------------------------------GTGGCCC--CAACC-ACGAC--CCATGTACACCCGC----G-CCCCCTTA-----------------GTCTTGTGAT-TTTCAGT-TAGTTATTTAAT-TTCAATTTT-CGATCC----CCA----------------ACAACAAAAAAACTACCCTCA-GA---------------------------AAACATGTAAGCTGAT------TC-CCCCGGCAGAGTACCTAGTTTTGTAAAAGTAGCACTGTAATTTTATGCAA-GTGAG---AAATACATGTTCGTTATGTTAAAAG-ACAGCA-----GC-------TGGCTCTT-GCATTGCGGAGGCC---TCCGA---------------------GTTCGGTGCTAAAGCCA---GCSizeHit CountTotal NormTotal
No Reads
droKik1
CACCAAGAAGCATAGCGAAAAACGTCCGGCGGATTAGCGGGACG-C--------------------------AAACGGAGG----TGGCGACA--------------------------------------------GCGACAACTGCGGCAGCGGCACAGAA-----------------------GAATCACCAT-T--G-CCGT----A-G-CCCTTA-----------------GTCTTGTGAT-TTTCAGT-TAGTTATTTAAT-TTTCATTTC--G---------TCAAAACTCGACTCCTCACCCCC---GACCCGATCCTCA-GA--GAGGGTTCT------C------T---TCCTCGTAAGCGGAG----ATTC-CCTTGGCAGAGTACATAGTCTTGTAAAAGTAGCACTGTAATTTTATGCAAAATGAGAAGAAATACATGTTCGTTATGTTAAAAGAACAGC------GC-------TGGGTTTTAGGATGGC---CACC---TCGGG---------------CTCTGTCTTGG---------------CCSizeHit CountTotal NormTotal
No Reads
droAna3
TACCAAGAAGCACAGCGAAAAGCGTCCGGCGGATTAGCGAGCTC------------------------------CAGATG-------------------------------------------------------------------------------------A----GTGGCCCACA-TCCTAC-AT--CCTGATACATCCTAGAT-C-C-CTTTTA-----------------GTCTTGTGAT-TTTCAGTTTAGTTATTAAAT-TATCATTTC--G--CC---CTTA-----------------------AAAAACTACCCTCG------------------------------AAACATGTAAACGGAG------AG-CCGTGGCAGAGTACATAGTTTTGTAAAAGTAGCACTGTAATTTTATGCAA-GTGAG---AAATACATGTTCGTTATGTTAAAAA-ACTGCT-----GG-------CGGTTCCT-TGATCGCGTTGGTT---AC------------------------ATTGGG------GGCTATGGCASizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
TACCAAGAAGCACAGCGAAAAGCGT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.001010000
...................................................................................................................................................................................................GATACATCCTAGAT-C-C-CTTT.........................................................................................................................................................................................................................................................................................................................................................2011.001010000
.....AGAAGCACAGCGAAAAGCGT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001000001
...........................................................................................................................................................................................................................................................................................................................................................................................................................................TATGCAA-GTGAG---AAATACATG...............................................................................................................2111.001100000
....................................................................................................................................................................................................ATACATCCTAGAT-C-C-CTTTTA-----------------GTC...................................................................................................................................................................................................................................................................................................................................2411.001010000
.....................................................................................................................................................................................................................................................................................................................................................................................................................TGTAAAAGTAGCACTGTAATTT........................................................................................................................................2211.001010000
...............................................................................................................................................................................................................................................................................................................................................................................AAACGGAG------AG-CCGTGGCAGA.........................................................................................................................................................................2011.001010000
..............................GGATTAGCGAGCTC------------------------------CAGATG-------------------------------------------------------------------------------------A----GT.......................................................................................................................................................................................................................................................................................................................................................................................................2311.001100000
................................ATTAGCGAGCTC------------------------------CAGATG-------------------------------------------------------------------------------------A----GT.......................................................................................................................................................................................................................................................................................................................................................................................................2111.001001000
...............................................................................................................................................................................................................................................................................................................................................................................AAACGGAG------AG-CCGTGGCAGAGTA......................................................................................................................................................................2311.001001000
...............................................................................................................................................................................................................................................................................................................................................................................AAACGGAG------AG-CCGTGGCAGAGTACA....................................................................................................................................................................2511.001010000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................G---AAATACATGTTCGTTATGT.....................................................................................................2011.001100000
..............................................................................................................................................................................................................................................................................................................................................................................TAAACGGAG------AG-CCGTGGCA...........................................................................................................................................................................1911.001100000
...................................................................................................................................................................................................................................................................................................................................................................................................TGGCAGAGTACATAGTTTTGTA..........................................................................................................................................................2211.001000001
......................................................................................................................................................................................................................CTTTTA-----------------GTCTTGTGAT-TTTCAGT....................................................................................................................................................................................................................................................................................................................2311.001000010
.......................................................................................................................................................................................CTAC-AT--CCTGATACATCCTA.....................................................................................................................................................................................................................................................................................................................................................................2011.001100000
........................................................................................................................................................................................TAC-AT--CCTGATACATCCTAGAT-C-C-C............................................................................................................................................................................................................................................................................................................................................................2511.001100000
...................................................................................................................................................................................................................................................................................................................................................................................................................TTTGTAAAAGTAGCACTGTAATT.........................................................................................................................................2311.001100000
..............GCGAAAAGCGTCCGGCGGATT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001100000
..........................................................................................................................................................................................................................................................................AT-TATCATTTC--G--CC---CTTA-----------------------AAA.....................................................................................................................................................................................................................................................2111.001010000
.......................................................................................................................................................................................................................................................................................................................................CG------------------------------AAACATGTAAACGGAG------AG-CCGT...............................................................................................................................................................................2411.001000010
.............................................................................................................................................................................................................................................................................................................................................................................GTAAACGGAG------AG-CCGTGGCAGA.........................................................................................................................................................................2211.001100000
.............................................................................................................................................................................................................................................................................................................................................................................GTAAACGGAG------AG-CCGTGGC............................................................................................................................................................................1911.001010000
...................................................................................................................................................................................................................................................................................................................................................................................................................TTTGTAAAAGTAGCACTGT.............................................................................................................................................1911.001010000
........................................................................................................................................................................................................................................................................................................................................G------------------------------AAACATGTAAACGGAG------AG-CCGTGGCA...........................................................................................................................................................................2711.001000001
droBip1
CACCAAGAAGCACAGCGAAAAACGCCCGGCGGATTAGCAAGCT------------------------------TGAGACG-------------------------------------------------------------------------------------A----GTGACCCGCA-TCCTAC-AT--CCTGATACATCCTAGAT-C-C-CCATTA-----------------GTCTTGTGAT-TTTCAGTTTAGTTATTAAAT-TATCATTTT-TCCTC-----TTA-----------------------ATAAACTACCCTCA------------------------------AAACATGTAAACGGAT------AT-CCGTGGCAGAGAACATAGTTTTGTAAAAGTAGCACTGTAATTTTATGCAA-GTGAG---AAATACATGTTCGTTATGTTAACTA-ACTGCT-----GG-------CTGTTCCT-TGATCGCGTTGGTT---AC------------------------GTTGGGAGCTATGGCAA---CCSizeHit CountTotal NormTotal
No Reads
dp5
CACCAAGAAGCACAGCGAAAAACGTCCGGCGGATTAGTGCTGTTTTCATGGCGA-GCCGCCAACAAACAAC-AAACGAAGACGGATGACGAAACCAAACTAAACCCCATCCCATTATTTTCACCCCCCTTCGAGTCTACGCCGAGTGCGACGGAGGG-CGA----------------ACA-AATTAT-TT--C-------------------A-CGCTTAGTCTACGAGTTCTCCCCGTTTTGTGAT-TTTCAAT-TAGCTTTTTAATGTTTTAACTT-CGATTT----TTC------------------------------------A-GT-AGAAAGTTTCGCAATTCTCCCAATTCCAATTTGTAAGGA--TCAGG--ATCCGTAGGAAGGG----TAGTTTTTTAATTGTAGCACTGTAATTTTATGCAA-GAGAG---AAATACAAGTTCGTTACATTAAAAC-ACAACGCCATCGATGGGCGGCGCCTCTT-TAATATCGGACACA---ATCGATGGATGCTCGACGGCCTCAGTGTC------------------GSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
...................................................................................................................................................................................................................................................................................................................................................................................A--TCAGG--ATCCGTAGGAAGGG----....................................................................................................................................................................20110.00100100001080
.............................................................................................................................................................................................................................................................................................................................................................................................................................TAGCACTGTAATTTTATGCAA-................................................................................................................................2114.0040000000400
.......................................................................................................................................................................................................................................................................................................................................................................................CAGG--ATCCGTAGGAAGGG----TA..................................................................................................................................................................2014.0040100001020
...................................................................................................................................................................................................................................................................................................................................................................................A--TCAGG--ATCCGTAGGAAGGG----T...................................................................................................................................................................2114.0040000003010
.....................................................................................................................................................................................................................................................................................................................................................................TCCAATTTGTAAGGA--TCAGG--ATCCGTAG..............................................................................................................................................................................2813.0030000000030
..........................................................................................................................................................................................................................................................................................................................................................................................................G----TAGTTTTTTAATTGTAGCAC................................................................................................................................................2113.0030000000030
...............................................................................................................................................................................................................................................................................TTAACTT-CGATTT----TTC------------------------------------A-GT-AG....................................................................................................................................................................................................................................2113.0030000000030
....................................................................................................................................................................................................................................................................................................................................................................................................................TTTTAATTGTAGCACTGTAAT..........................................................................................................................................2113.0030000000030
.........................................................................................................................................ACGCCGAGTGCGACGGAGG.......................................................................................................................................................................................................................................................................................................................................................................................................................1913.0030300000000
.................................................................................................................................................................................................................................................................................................................................................................................................................GTTTTTTAATTGTAGCACTGT.............................................................................................................................................2113.0030000000030
...............................................................................................................................................................................................................................................................................................................................................................................AAGGA--TCAGG--ATCCGTAGGAA...........................................................................................................................................................................2112.0020100000010
...............................................................................................................................................................................................................................................................................................................................................................................AAGGA--TCAGG--ATCCGTAGGAAG..........................................................................................................................................................................2212.0020100000010
...................................................................................................................................GAGTCTACGCCGAGTGCGACGGAGG.......................................................................................................................................................................................................................................................................................................................................................................................................................2512.0020200000000
.............................................................................................................................................................................................................................................................................................................................................................................GTAAGGA--TCAGG--ATCCGTAGG.............................................................................................................................................................................2112.0020100001000
......................................................................................................................................................................................................................................................................................................................................................................................................................TTAATTGTAGCACTGTAATTT........................................................................................................................................2112.0020000000020
..........................................................................................................................................................................................................................................................................................................................................................................................................G----TAGTTTTTTAATTGTAGCACT...............................................................................................................................................2212.0020200000000
................................................................................................................................................................................................................................................................................................................................................................................................................AGTTTTTTAATTGTAGCACTG..............................................................................................................................................2112.0020010000010
.....................................................................................................................................GTCTACGCCGAGTGCGACGGA.........................................................................................................................................................................................................................................................................................................................................................................................................................2112.0020200000000
..................................................................................................................................................................................................................................................................................................................................................................................................................TTTTTTAATTGTAGCACTGTA............................................................................................................................................2112.0020000000020
..............GCGAAAAACGTCCGGCGGATTAGT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2412.0020000000002
...........................................................................................................................................................................................................................................................................................................................................................................................................................TGTAGCACTGTAATTTTATGCAA-GAGAG---........................................................................................................................2812.0020000000020
.................................................................................................................................................................................................................................................................................AACTT-CGATTT----TTC------------------------------------A-GT-AGAAAGT...............................................................................................................................................................................................................................2412.0020200000000
.........................................................................AACGAAGACGGATGACGAAACCAAACT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................2712.0021100000000
.....................................................................................................................................................................................................................................................................................................................................................TCGCAATTCTCCCAATTCC...........................................................................................................................................................................................................1911.0010100000000
...................................................................................................................................................................................................................................................................................................C------------------------------------A-GT-AGAAAGTTTCGCAATTC.....................................................................................................................................................................................................................2111.0010010000000
.........................................................................................................................................................................................................................................................TTCAAT-TAGCTTTTTAATGTT....................................................................................................................................................................................................................................................................................................2111.0010100000000
..................................................................ACAAC-AAACGAAGACGGATGACGAAACC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.0010010000000
...............................................ATGGCGA-GCCGCCAACAAACAAC-...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010100000000
................................................................................................................................................................................................................................................................................................................................................................................AGGA--TCAGG--ATCCGTAGGAAG..........................................................................................................................................................................2111.0010000001000
....................................................................................................................................................................................................................................................................................................................................................................TTCCAATTTGTAAGGA--TCAGG--......................................................................................................................................................................................2111.0010000001000
...................................................................................................................................GAGTCTACGCCGAGTGCGACGGAGGG-C....................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010010000000
........................................................................................................................................................................................................................................................................................................................................................................AATTTGTAAGGA--TCAGG--ATCC..................................................................................................................................................................................2111.0010000001000
.................................................................................................................................................................................................................................................................................................................................................................................GGA--TCAGG--ATCCGTAGGAAGG.........................................................................................................................................................................2111.0010100000000
................................................................................ACGGATGACGAAACCAAACTAAACCC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010100000000
.....................................................................................................................................................................................................................................................................................T-CGATTT----TTC------------------------------------A-GT-AGAAAGT...............................................................................................................................................................................................................................2011.0010100000000
..................................................................................................................................CGAGTCTACGCCGAGTGCGACGG..........................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010100000000
......................................................................................................................................................................................................................................................................................................................................................................................TCAGG--ATCCGTAGGAAGG.........................................................................................................................................................................1811.0010100000000
.........................................................................AACGAAGACGGATGACGAAACCA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010010000000
.......................................................................................................................................CTACGCCGAGTGCGACGGAGG.......................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000001000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................TAATTTTATGCAA-GAGAG---AAA.....................................................................................................................2111.0010000001000
......................................................................C-AAACGAAGACGGATGACGAA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010100000000
.....................................................................................................................................................................................................................................................................TTTTAATGTTTTAACTT-CGAT........................................................................................................................................................................................................................................................................................2111.0010100000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................TAATTTTATGCAA-GAGAG---AAAT....................................................................................................................2211.0010000001000
....................AACGTCCGGCGGATTAGTG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000001000
.........................................................................AACGAAGACGGATGACGAAACCAAACTA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.0010010000000
....................................GTGCTGTTTTCATGGCGA-GCCGCCAACA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.0010100000000
.......................................................................................................................................CTACGCCGAGTGCGACGGAGGG-CGA----------------..................................................................................................................................................................................................................................................................................................................................................................................................2511.0010100000000
..................................................................................................................................................................................................................................................................................................................................................................AATTCCAATTTGTAAGGA--TCAGG--ATCC..................................................................................................................................................................................2711.0010100000000
.................AAAAACGTCCGGCGGATTAGT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010100000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................TTATGCAA-GAGAG---AAATACA.................................................................................................................2011.0010000001000
.......................................................................................................................................................................................................................................................................................................................................................................................................................TAATTGTAGCACTGTAATTTTATGC...................................................................................................................................2511.0010000000100
..........................................................................................................................................................................................................................................................................................................................................................................................................................................TTATGCAA-GAGAG---AAATACAAGTTCGTT.........................................................................................................2811.0010100000000
............................................................................................................................................................................................................................................................................................................................................................................................................................GTAGCACTGTAATTTTATGC...................................................................................................................................2011.0010100000000
......................................................................................................................................................................................................................................................................................................................................................................................TCAGG--ATCCGTAGGAAGGG----TAG.................................................................................................................................................................2211.0010100000000
......................................................................................................................................................................................................................................................................................................................................................................CCAATTTGTAAGGA--TCAGG--ATCCGTA...............................................................................................................................................................................2611.0010100000000
................................................................................................................................................GTGCGACGGAGGG-CGA----------------ACA-AATT..........................................................................................................................................................................................................................................................................................................................................................................................2311.0010100000000
....................................................................................................................................AGTCTACGCCGAGTGCGACGGAGG.......................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010100000000
........................................................................AAACGAAGACGGATGACGAAACCA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010100000000
.....................ACGTCCGGCGGATTAGTGCTGTTTTCA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010100000000
...........................................................................................................................................GCCGAGTGCGACGGAGGG-CGA----------------ACA-AATT..........................................................................................................................................................................................................................................................................................................................................................................................2811.0010001000000
.......................................................................................................................................................................................................................................................................................................................................................................................................AGGG----TAGTTTTTTAATTGTAGC..................................................................................................................................................2211.0010100000000
...................................................................................................................................................................................................................................................................................................................................................................................................AGGAAGGG----TAGTTTTTTAATTGT.....................................................................................................................................................2311.0010100000000
............................................................................................................................................................................................................................................................................................................................................................................................................................GTAGCACTGTAATTTTATGA...................................................................................................................................2011.0010000000010
..........................................................................................................................................................................................................................................................................................................................................................................................G--ATCCGTAGGAAGGG----TAGTTTC.............................................................................................................................................................2211.0010000000010
.........................................................................................................................................................................................................................................................................................................................................................................................GG--ATCCGTAGGAAGGG----TAG.................................................................................................................................................................1911.0010000000010
..............................................................................................................................................................................................................................................................................................................................................................................TAAGGA--TCAGG--ATCCGTAGGAAGGG----TAG.................................................................................................................................................................2811.0010000000010
....................................................................................................................................................................................................................................................................................................................................................TTCGCAATTCTCCCAATTCCA..........................................................................................................................................................................................................2111.0010100000000
..................................TAGTGCTGTTTTCATGGCGA-G...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010100000000
............................................................................................................................................................................................................................................................................................................................................................................................................................GTAGCACTGTAATTTTATAA...................................................................................................................................2011.0010000000010
.................................................................AACAAC-AAACGAAGACGGA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010100000000
.............................................................................AAGACGGATGACGAAACCA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010100000000
..................................TAGTGCTGTTTTCATGGCGA-GCCGC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010100000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................GAG---AAATACAAGTTCGTTACATT....................................................................................................2311.0010100000000
..........................................................................................................................................................................................................................................................................................TTT----TTC------------------------------------A-GT-AGAAAGTTTCG...........................................................................................................................................................................................................................2011.0010000001000
.............................................................................................................................................................................................................................................................................................................................................................CTCCCAATTCCAATTTGTAAGT................................................................................................................................................................................................2211.0010000001000
.....................................................................................................................................GTCTACGCCGAGTGCGACGGAGGG-C....................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000001000
....................................................................................................................................................................................................................................................................................................................................................................................................................TTTTAATTGTAGCACTGTA............................................................................................................................................1911.0011000000000
.............................................................................................................................................................................................................................................................................................................................................................................................ATCCGTAGGAAGGG----TAGTTTT.............................................................................................................................................................2111.0010100000000
..................................................................................................................................CGAGTCTACGCCGAGTGCGACGGAGGG-C....................................................................................................................................................................................................................................................................................................................................................................................................................2811.0010000100000
..........................................................................ACGAAGACGGATGACGAAACC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010100000000
..............................................................................................CAAACTAAACCCCATCCCATTATT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010100000000
............................................................CAACAAACAAC-AAACGAAGACGGA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010100000000
............................................................................................................................................................................................................................................................................................................................................................................................................................GTAGCACTGTAATTTTATGCAA-GAGA............................................................................................................................2611.0010100000000
..............................................................................................................................................................................................................................................................................................................................................GAAAGTTTCGCAATTCTCCC.................................................................................................................................................................................................................2011.0010001000000
...................................................................................................................................................................................................................................................................................................................................................................................A--TCAGG--ATCCGTAGGAAGGA----....................................................................................................................................................................2011.0010000000010
.......................................................................................................................................CTACGCCGAGTGCGACGGAGGG-C....................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010100000000
...................................................................................................................................GAGTCTACGCCGAGTGCGACGGA.........................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000100000
...................................................................................................................................................................................................................................................................................................................................................................................................................TTTTTAATTGTAGCACTGTA............................................................................................................................................2011.0010000000010
..................................................................................................................................CGAGTCTACGCCGAGTGCGACGGAGG.......................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000100000
..................................................................ACAAC-AAACGAAGACGGATGA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000001000
.................................................................................................................................................................................................................................CGAGTTCTCCCCGTTTTGT...............................................................................................................................................................................................................................................................................................................................1911.0010100000000
.......................................................................................................................................................................................................................................................................................................................................................................................CAGG--ATCCGTAGGAAGGG----....................................................................................................................................................................1811.0010000000001
............................................................................................................................................CCGAGTGCGACGGAGGG-CGA----------------ACA-..............................................................................................................................................................................................................................................................................................................................................................................................2311.0010000100000
.................................................................................................................................................................................................................................................................................................................................................................................................................GTTTTTTAATTGTAGCACTG..............................................................................................................................................2011.0010000000010
........................................................................................................................................TACGCCGAGTGCGACGGAGGG-.....................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010100000000
......................................................................................................................................TCTACGCCGAGTGCGACGGA.........................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010100000000
..............................GGATTAGTGCTGTTTTCATG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010100000000
.............................................................................................................................................................................................................................................................................................................................................................................GTAAGGA--TCAGG--ATCCGTAGGAAGGG----....................................................................................................................................................................2611.0010000000100
................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAGTTCGTTACATTAAAA................................................................................................1911.0010100000000
..CCAAGAAGCACAGCGAAAAACGTCCGGC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.0010100000000
...................................................................................................................................................................................................................................................................................................................................................................................A--TCAGG--ATCCGTAGGAAG..........................................................................................................................................................................1811.0010100000000
..............................................................................................................................................................................................................................................................................................................................................................................TAAGGA--TCAGG--ATCCGTAGGAAGGG----....................................................................................................................................................................2511.0010000000010
............................................................................................................................................................................................................................................................................................................................................................................TGTAAGGA--TCAGG--ATCCGTAG..............................................................................................................................................................................2111.0010000000010
.........................................................................................................................................................................................................................................................................................................................................................AATTCTCCCAATTCCAATTTG.....................................................................................................................................................................................................2111.0010100000000
....................................................................................................................................................................................................................................................................TTTTTAATGTTTTAACTT-CGA.........................................................................................................................................................................................................................................................................................2111.0010000000010
........................................................................................................................................................................................TAT-TT--C-------------------A-CGCTTAGTCTACGA...............................................................................................................................................................................................................................................................................................................................................2111.0010100000000
...................................................................................................................................GAGTCTACGCCGAGTGCGACGGAG........................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010100000000
..................................................................................................................................................................................CA-AATTAT-TT--C-------------------A-CGCTTAGTCTACGA...............................................................................................................................................................................................................................................................................................................................................2611.0010100000000
droPer2
CACCAAGAAGCACAGCGAAAAACGTCCGGCGGATTAGTGCTGTGGCCATGGCGA-GCCGCCAACAAACAAC-AAACGAAGACGGATGACGAAACCAAACTAAACCCCATCCCATTATTTTCACCCCCCTTCGAGTCTACGCCGAGTGCGACGGAGGG-CGA----------------ACA-AATTAT-TT--C-------------------A-CGCTTAGTCTACGAGTTCTCCCCGTTTTGTGAT-TTTCAAT-TAGCTTTTTAATGTTTTAACTT-CGATTT----TTC------------------------------------A-GT-AGAAAGTTTCGCAATTCTCCCAATTCCAATTTGTAAGGA--TCAGG--ATCCGTAGGAAGGG----TAGTTTTTTAATTGTAGCACTGTAATTTTATGCAA-GAGAG---AAATACAAGTTCGTTACATTAAAAC-ACAACGCCATCGATGGGTGGCGCCTCTT-TAATAGCGGACACA---ATCGATGGCTGCTCGACGGCCCCAGTGTC------------------GSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
.................................TTAGTGCTGTGGCCATGGCGA-GAA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2413.003300000
.........................................................................AACGAAGACGGATGACGAAACC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2213.003300000
..............................................................................AGACGGATGACGAAACCAAACT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001100000
..CCAAGAAGCACAGCGAAAAACGTCCGGC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.001010000
.....................................................................................................................................GTCTACGCCGAGTGCGACGGAGGG-C....................................................................................................................................................................................................................................................................................................................................................................................................................2511.001001000
..................................................................................................................................................................................................................................................................................................................................................................AATTCCAATTTGTAAGGA--TCA..........................................................................................................................................................................................2111.001010000
..............................GGATTAGTGCTGTGGCCAT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001010000
......................................................................................................................................................................................................................................................................................................................................................................................TCAGG--ATCCGTAGGAAGGG----TAGT................................................................................................................................................................2311.001010000
.............................................................................................................................................................................................................................................................................................................................................................................GTAAGGA--TCAGG--ATCCGTAGGAAGGG----....................................................................................................................................................................2611.001010000
.................................................................................................................................................................................................................................................................................................................................................................................................................GTTTTTTAATTGTAGCACT...............................................................................................................................................1911.001100000
................................................................................................................................................................................................................................................................................TAACTT-CGATTT----TTC------------------------------------A-GT-AG....................................................................................................................................................................................................................................2011.001010000
..................................................................................................................................................................................................................................................................................................................................................................................GA--TCAGG--ATCCGTAGGAAGGG----T...................................................................................................................................................................2211.001000001
.................................................................................................................................................................................................................................................................................................................................................................................................................................ACTGTAATTTTATGCAA-GAGAG---AAAT....................................................................................................................2611.001010000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................TGCAA-GAGAG---AAATACAAGTTT............................................................................................................2211.001000001
..CCAAGAAGCACAGCGAAAAACGTCCG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.001010000
...............................................................................................................................................................GA----------------ACA-AATTAT-TT--C-------------------A-CGCT.........................................................................................................................................................................................................................................................................................................................................................1911.001010000
..........................................................................................................................................................................................................................................................................................TTT----TTC------------------------------------A-GT-AGAAAGTTTCGC..........................................................................................................................................................................................................................2111.001000100
..........................................................................................................................................................................................................................TAGTCTACGAGTTCTCCCC......................................................................................................................................................................................................................................................................................................................................1911.001010000
...................................................................................................................................................................................................................................................................................................................................................................................A--TCAGG--ATCCGTAGGAAGG.........................................................................................................................................................................1911.001000001
.....................................................................................................................................................................................................................................................................................................................................................................TCCAATTTGTAAGGA--TCAGG--A.....................................................................................................................................................................................2111.001010000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................ATACAAGTTCGTTACATTAA..................................................................................................2011.001000001
......................................................................................................................................................................................................................................................................................................................................................................................TCAGG--ATCCGTAGGAAGGG----T...................................................................................................................................................................2011.001000001
...................................................................CAAC-AAACGAAGACGGAT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.001010000
...................................................................................................................................................................................................................................................................................................................................................TTTCGCAATTCTCCCAATTCCAATTT......................................................................................................................................................................................................2611.001010000
....................................................................AAC-AAACGAAGACGGATGAC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001000001
.....................................................................................................................................GTCTACGCCGAGTGCGACGGA.........................................................................................................................................................................................................................................................................................................................................................................................................................2111.001001000
droWil2
TACCAGGAAACATTGCGAAAAGCGTCCGGCAGATTA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
.....GGAAACATTGCGAAAAGCGT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2012.00200200
........AACATTGCGAAAAGCGTCCGGC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.00100100
............TTGCGAAAAGCGTCCGGCA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00101000
...........ATTGCGAAAAGCGTCCGGC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00101000
droVir3
TACCAGGAAACACAGCGAAAAGCGTCCGGCCGATTAG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
.......AAACACAGCGAAAAGCGTCCGGC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2312.002000000000000000000000000000000001010000000000000000000000000000
.......AAACACAGCGAAAAGCGTCCGGCC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.001100000000000000000000000000000000000000000000000000000000000000
.........ACACAGCGAAAAGCGTCCGGCC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001001000000000000000000000000000000000000000000000000000000000000
..........CACAGCGAAAAGCGTCCG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.001000000010000000000000000000000000000000000000000000000000000000
........AACACAGCGAAAAGCGTCCGGC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001001000000000000000000000000000000000000000000000000000000000000
droMoj3
CACCAGGAAACACAGCGAAAAGCGTCCGGCTGACTAGTGCAATTGAGGCG--------------AT-------AGGTGAG---------------------------------------------------------------------------------------------G-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
..............GCGAAAAGCGTCCGGCTGACTAGTGC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.001000001
.ACCAGGAAACACAGCGAAAA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001000001
...............................GACTAGTGCAATTGAGGCG--------------...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001100000
...............................GACTAGTGCAATTGAGGC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.001100000
..........CACAGCGAAAAGCGTCCGGCTGACTAGT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.001000001
droGri2
TACCAGGAAACACAGCGAAAAGCGTCCGGCTGATTAGTCCAACGATGCGGAGGAT---------GAAGAT-GTGGAGGAG------------------------------------------------------------------------------------------GAGG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
................................ATTAGTCCAACGATGCGGAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00101
..............GCGAAAAGCGTCCGGCTG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.00110

Generated: 05/19/2015 at 01:47 AM