ID:

dsi_13048

 Coordinate:

3r:4249720-4249869 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-4.6 -4.2 -4.2

Flybase annnotation

five_prime_UTR [3r_4249870_4249885_+]; CDS [3r_4249886_4250993_+]; exon [3r_4249870_4250993_+]; intron [3r_4245973_4249869_+]

No Repeatable elements found

mature
star
  1. dsi_13048  3r:4249772-4249786 +
  2. 3r:5653104-5653118 -

Sense Strand Reads

--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
TATAATAGTTTATTGTGCGAGCGCTCCATTAACACGAAGTGTTATAAATATGCATGTATGAATGAATTTAATTGCTGCCGCAAGGCATTAACCTGCATTGCATAATACAAGCTGGGAATGATGATGTAACCTAGAGATTCTCCGACTAAGATCCTAAGCCCAAAGCTGCCTAAATACAACTAACAAAGTATTCCCCACAGTTAAAATATCTTCAAGATGGGTTCGCTGCCACAATTGTCGATCGTCAAGG
******************************************************************************************************.......((.(((((((.................)))).))).))............******************************************************************************************* 		Read size # Mismatch Hit Count Total Norm Total SRR618934
dsim w501 ovaries
 M023
head
 SRR902008
ovaries
 M025
embryo
 SRR553486
Makindu_3 day-old ovaries
...............................................ATATGCATGTATGAATGAATT...................................................................................................................................................................................... 21 0 1 1.00 1 1 0 0 0 0
...........................................................................................................................................CTCCGACTAAGATCCTAAGC........................................................................................... 20 0 1 1.00 1 0 1 0 0 0
......................................................................................................TAATACAAGCTGGGA..................................................................................................................................... 15 0 2 0.50 1 1 0 0 0 0
..............................................................................................................TCTGGTACTGATGATGTAAC........................................................................................................................ 20 3 3 0.33 1 0 0 1 0 0
.....................................................................................................ATACTACCAGCTGGGACTGA................................................................................................................................. 20 3 4 0.25 1 0 0 0 1 0
..................................................................................................................................................TAACATCCTAAACCCAATGCT................................................................................... 21 3 9 0.11 1 1 0 0 0 0
........................................................................................................ATACGAGCTGGGAATG.................................................................................................................................. 16 1 9 0.11 1 0 0 0 0 1

Anti-sense strand reads

ATATTATCAAATAACACGCTCGCGAGGTAATTGTGCTTCACAATATTTATACGTACATACTTACTTAAATTAACGACGGCGTTCCGTAATTGGACGTAACGTATTATGTTCGACCCTTACTACTACATTGGATCTCTAAGAGGCTGATTCTAGGATTCGGGTTTCGACGGATTTATGTTGATTGTTTCATAAGGGGTGTCAATTTTATAGAAGTTCTACCCAAGCGACGGTGTTAACAGCTAGCAGTTCC
*******************************************************************************************.......((.(((((((.................)))).))).))............****************************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total GSM343915
embryo
 M023
head
 M024
male body
...................................................CGTACATACTTACGGAAATTAT................................................................................................................................................................................. 22 3 3 0.33 1 1 0 0
...................TCGCAAGGTGATTGAGCTTC................................................................................................................................................................................................................... 20 3 6 0.17 1 0 0 1
.....................................................................................................................................................................................................................................GTAGTAACAGCTTGCAGTT.. 19 3 20 0.10 2 0 2 0
...............................................................................................................................................................................TGTCGATTGTTGCACAAGG........................................................ 19 3 17 0.06 1 0 1 0
......................CGAGGTCATTGTTCTTGAC................................................................................................................................................................................................................. 19 3 20 0.05 1 0 1 0

Generated: 04/23/2015 at 11:26 PM