ID:

dsi_13029

 Coordinate:

3r:10063660-10063752 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-7.7 -7.5 -7.4

Flybase annnotation

exon [3r_10063449_10063659_+]; CDS [3r_10063449_10063659_+]; CDS [3r_10063753_10063978_+]; exon [3r_10063753_10063978_+]; intron [3r_10063660_10063752_+]

No Repeatable elements found

Sense Strand Reads

##################################################---------------------------------------------------------------------------------------------##################################################
AGGAGACGCCCCTCACAAGTCTGGGATTAAGCCTCAGCGGCTGCGAGCAGGTCAGTGTCAGTGGTTACAACTCATTAACTACTTTCAAGAATCAAATATTTTAAATAAGTCTTAAACACATATAACTATATCTATCCTAACAGGAGGCCACCAATCGCGAGCTGGAGCAGGAGCTGCGCACCACGTTTCCGGA
**************************************************.....((..((((((((........))))))))..))........................................................************************************************** 		Read size # Mismatch Hit Count Total Norm Total M025
embryo
 SRR618934
dsim w501 ovaries
 M023
head
 O002
Head
 SRR553487
NRT_0-2 hours eggs
 SRR553488
RT_0-2 hours eggs
...........................................................................................................................................................CGCGAGCTGGAGCAGGAGCTG................. 21 0 1 1.00 1 0 0 1 0 0 0
...............................CCTCAGCGGCTGCGAGCAG............................................................................................................................................... 19 0 1 1.00 1 0 1 0 0 0 0
.................................................................................................................................................GGCCACCAATCGCGAGCCGGAGC......................... 23 1 1 1.00 1 1 0 0 0 0 0
.................................................................................................................................................GGCCACCAATCGCGAGCTGGAGC......................... 23 0 1 1.00 1 1 0 0 0 0 0
........................................................GTCAGTGGTTACAACTCATTA.................................................................................................................... 21 0 1 1.00 1 0 0 0 1 0 0
...................TCTGGAATTAAGCCT............................................................................................................................................................... 15 1 4 0.50 2 0 0 0 0 1 1
...............CGATTCTGGAATTAAGCCT............................................................................................................................................................... 19 3 12 0.33 4 0 0 0 0 4 0
.................................................................................................................................................GGCCACCAATCCCGAGC............................... 17 1 5 0.20 1 0 1 0 0 0 0
.................ATTCTGGAATTAAGCCT............................................................................................................................................................... 17 2 14 0.07 1 0 0 0 0 1 0

Anti-sense strand reads

TCCTCTGCGGGGAGTGTTCAGACCCTAATTCGGAGTCGCCGACGCTCGTCCAGTCACAGTCACCAATGTTGAGTAATTGATGAAAGTTCTTAGTTTATAAAATTTATTCAGAATTTGTGTATATTGATATAGATAGGATTGTCCTCCGGTGGTTAGCGCTCGACCTCGTCCTCGACGCGTGGTGCAAAGGCCT
**************************************************.....((..((((((((........))))))))..))........................................................************************************************** 		Read size # Mismatch Hit Count Total Norm Total M023
head
 O002
Head
 M024
male body		 SRR553487
NRT_0-2 hours eggs
 SRR553488
RT_0-2 hours eggs
 SRR618934
dsim w501 ovaries
 M053
female body
.....................................................................................GTTCTTAGTTTATAAAAT.......................................................................................... 18 0 1 1.00 1 0 1 0 0 0 0 0
...........................................................................ATTGATGAAAGTTCTTAGT................................................................................................... 19 0 1 1.00 1 0 1 0 0 0 0 0
...........................................GCTCGTCCAGTCACAGTCAC.................................................................................................................................. 20 0 1 1.00 1 1 0 0 0 0 0 0
...........................................................................................................TCAGAATTTGTGTATATTGAT................................................................. 21 0 1 1.00 1 0 0 1 0 0 0 0
................................................GCCAGTCACAGTCACCAATGT............................................................................................................................ 21 1 1 1.00 1 1 0 0 0 0 0 0
..................................................................TGTTGAGTAATAGATG............................................................................................................... 16 1 2 0.50 1 0 0 0 1 0 0 0
.......CGGGGAGAGTTCAGA........................................................................................................................................................................... 15 1 3 0.33 1 0 0 0 1 0 0 0
...........................................................TCAACAATGTTGAGGAAT.................................................................................................................... 18 2 6 0.33 2 1 0 1 0 0 0 0
.....................................................TCGCAGTCACCAATTGTG.......................................................................................................................... 18 3 20 0.10 2 0 0 1 0 0 0 1
..................................................................................................................................AGATAGGACTGTCCTCG.............................................. 17 2 14 0.07 1 0 0 0 0 1 0 0
..............................CGGAGTGGCCCACGCT................................................................................................................................................... 16 2 16 0.06 1 0 0 0 0 0 1 0
.....................................................TCACAGTCAGCAATGAAG.......................................................................................................................... 18 3 20 0.05 1 0 0 1 0 0 0 0

Generated: 04/24/2015 at 10:24 AM