ID:

dsi_13024

 Coordinate:

3r:1273939-1274197 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-21.4 -21.4 -21.4

Flybase annnotation

exon [3r_1274198_1274334_-]; CDS [3r_1274198_1274334_-]; exon [3r_1273534_1273938_-]; CDS [3r_1273534_1273938_-]; intron [3r_1273939_1274197_-]

No Repeatable elements found

Sense Strand Reads

##################################################-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
ACGCCCCGCAACCCATTGGAGGAGGTGTCACCATCAGTGCTCCTCACATGGTAACTCAACTCCTAGCCAGGGCATTAAATAAAAAATTTGCTGTGGGAGCCAATGCCCACACTCATGGTGCTTTTAGGAGGAAGCATAAAGAAATGTTTTTTTTTAATCCTCTCATAGGCCTACTACTAAAAAATATTAATGGCTGATCATTTGAAGACTAGTTCTTCATTCCCGTAGTCTCTTCAAATCATATTCTTATAATTTCTCAAAGTAAAGTGTCTTGTTGGACTGAAAATTAATACGTTTTTTTTTTCCCAGCATGCCTTCGCCTTGGAGTACCTACGCGACCAATTGAAGCCCGGTGCACG
**************************************************************************************************************************....((((((....((((((((....)))))))).))))))....((((....................))))....((((((((((((..............))))))..))))))...............................***************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR902008
ovaries
 SRR618934
dsim w501 ovaries
 M023
head
 M053
female body
 SRR902009
testis
 GSM343915
embryo
 SRR553487
NRT_0-2 hours eggs
 SRR553486
Makindu_3 day-old ovaries
 SRR553488
RT_0-2 hours eggs
..................................................................................................................................................................................................................................................................................TTGGACTGGAAATTAATACGTTTTT............................................................ 25 1 1 2.00 2 2 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................................................................................................TGGACTGGAAATTAATACGTTTTT............................................................ 24 1 1 2.00 2 1 0 0 0 1 0 0 0 0
...........................................................................................................................................................................................................................................................................................................................................TACGCGACCAATTGAAGCCCGGTGCA.. 26 0 1 2.00 2 2 0 0 0 0 0 0 0 0
..........................................................................................................................TTTAGGAGGAAGCATAAAGAAATG..................................................................................................................................................................................................................... 24 0 1 1.00 1 1 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................................................................................................TTGGACTGGAAATTAATACGTTTTAA........................................................... 26 3 1 1.00 1 1 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................................................................................................................................................................TACCTACGCGACCAATTGAAGCCCGG...... 26 0 1 1.00 1 1 0 0 0 0 0 0 0 0
..............................CCATCAGTGCTCCTCACATG..................................................................................................................................................................................................................................................................................................................... 20 0 1 1.00 1 0 0 1 0 0 0 0 0 0
.......................................................................................................................................................................................................................................................TATAATTTCTCAAAGTAAAGTGT......................................................................................... 23 0 1 1.00 1 0 1 0 0 0 0 0 0 0
................................................................................................................................................................................................................................................................TATAAGTAAAGTGTCTTGTTGGACTG............................................................................. 26 2 1 1.00 1 1 0 0 0 0 0 0 0 0
................................................................................................................................................................................................................................................................................................................................................GACCAATTGAAGCCCGGT..... 18 0 1 1.00 1 0 0 0 1 0 0 0 0 0
..................................................................................................................................................................................................................................................................................TTGGACTGGAAATTAATACGTTTTTC........................................................... 26 2 1 1.00 1 1 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................................................................................................TGGACTGGAAATTAATACGTTTTTC........................................................... 25 2 1 1.00 1 1 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................................................................................................TTGTTGGACTGGAAATTAATACGT................................................................ 24 1 1 1.00 1 1 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................................................................................................TGGACTGGAAATTAATACGTT............................................................... 21 1 1 1.00 1 1 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................................................................................................................................................TGCCTTCGCCTTGGAGTACC............................ 20 0 1 1.00 1 0 0 0 0 0 1 0 0 0
........................................................................................................................CTTTTAGGAGGAAGCATAAAGAAATGG.................................................................................................................................................................................................................... 27 1 1 1.00 1 1 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................................................................TATATTCTCAAAGTAAACTGTCT....................................................................................... 23 3 2 0.50 1 0 0 0 0 0 0 1 0 0
.......GCAACCCATTGTAGG................................................................................................................................................................................................................................................................................................................................................. 15 1 5 0.20 1 0 0 0 0 0 0 1 0 0
....................................................................................................................................................................................................ATCCTTGGAAGACTAGT.................................................................................................................................................. 17 2 9 0.11 1 0 1 0 0 0 0 0 0 0
.......................................................................................TTGCTGGGGGAGCCA................................................................................................................................................................................................................................................................. 15 1 11 0.09 1 0 0 0 0 0 0 0 0 1
..............ATTCTAGGAGGTGGCACCA...................................................................................................................................................................................................................................................................................................................................... 19 3 14 0.07 1 0 0 0 0 0 0 0 1 0
......................................................................................................................................................................................................................................................................................................................ATGCCTTCGCGATGTAGTA.............................. 19 3 15 0.07 1 0 0 0 0 0 0 1 0 0
...................................................................................................................................................................................................GAACCTTGGAAGACTAGT.................................................................................................................................................. 18 3 20 0.05 1 0 1 0 0 0 0 0 0 0
..................................................................................................................ATGTTGCTTTTAGGA...................................................................................................................................................................................................................................... 15 1 20 0.05 1 0 0 0 0 0 0 0 1 0
.....................GAGGTGTTGCCATCAGT................................................................................................................................................................................................................................................................................................................................. 17 2 20 0.05 1 0 1 0 0 0 0 0 0 0
...................................................................................................................................................................................................GAACCTTGGAAGACTAG................................................................................................................................................... 17 3 20 0.05 1 0 1 0 0 0 0 0 0 0
..................................................................................................................................................................................................................................................................................TCGGACTGAAAATTAAAA................................................................... 18 2 20 0.05 1 0 0 0 0 0 0 1 0 0

Anti-sense strand reads

TGCGGGGCGTTGGGTAACCTCCTCCACAGTGGTAGTCACGAGGAGTGTACCATTGAGTTGAGGATCGGTCCCGTAATTTATTTTTTAAACGACACCCTCGGTTACGGGTGTGAGTACCACGAAAATCCTCCTTCGTATTTCTTTACAAAAAAAAATTAGGAGAGTATCCGGATGATGATTTTTTATAATTACCGACTAGTAAACTTCTGATCAAGAAGTAAGGGCATCAGAGAAGTTTAGTATAAGAATATTAAAGAGTTTCATTTCACAGAACAACCTGACTTTTAATTATGCAAAAAAAAAAGGGTCGTACGGAAGCGGAACCTCATGGATGCGCTGGTTAACTTCGGGCCACGTGC
*****************************************************************************************....((((((....((((((((....)))))))).))))))....((((....................))))....((((((((((((..............))))))..))))))...............................************************************************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR902008
ovaries
 SRR902009
testis
 SRR553487
NRT_0-2 hours eggs
 SRR618934
dsim w501 ovaries
 SRR553485
Chicharo_3 day-old ovaries
 SRR553488
RT_0-2 hours eggs
 SRR553486
Makindu_3 day-old ovaries
 SRR1275487
Male larvae
.............................................................................................................................................................................................................TCTGATCAAGAAGTAAGGGCATCA.................................................................................................................................. 24 0 1 1.00 1 1 0 0 0 0 0 0 0
................................................................................................ATCGGTAACGGGTGTGAGTAC.................................................................................................................................................................................................................................................. 21 2 1 1.00 1 1 0 0 0 0 0 0 0
.......................................................................................................................................................................................................................................................................................................AAAAAAAAAGGGGCATACGGAA.......................................... 22 2 1 1.00 1 0 1 0 0 0 0 0 0
..................................................................................................................................................................................................................................TCAGAGAAGTTTAGTATAAGT................................................................................................................ 21 1 1 1.00 1 1 0 0 0 0 0 0 0
..............................................GTATCATTGAGTTGAGGAAC..................................................................................................................................................................................................................................................................................................... 20 2 1 1.00 1 1 0 0 0 0 0 0 0
...........................................................................................................................................................................................................CTTCTGATCAAGAAGTAAGGGCAT.................................................................................................................................... 24 0 1 1.00 1 0 0 1 0 0 0 0 0
...................................................................................................................................................................................................................CAAGAAGTAAGGGCATCAGAGAAGTTT......................................................................................................................... 27 0 1 1.00 1 0 0 0 1 0 0 0 0
........................................................................................................................................................................................................................................................................................................................CGGAAGCGGAACCTCATGGA........................... 20 0 1 1.00 1 0 1 0 0 0 0 0 0
.........................................................................................................................................................................................................................................................................................................AAAAAAAGGGGCATACGGAA.......................................... 20 2 2 0.50 1 0 1 0 0 0 0 0 0
.....................................................................................................................................................................................................................................................................................................................................TCATGGATGCGAGGGTT................. 17 2 4 0.50 2 0 0 0 0 2 0 0 0
..........................................................................................................................................................................................................................................................................................................AAAAAAGGGGCATACGGAA.......................................... 19 2 4 0.50 2 0 2 0 0 0 0 0 0
........................................................................................................................................................................................................................................................................................................AAAAAAAAGGGGCATACGGAAT......................................... 22 3 3 0.33 1 0 1 0 0 0 0 0 0
......................................................................................................................................................................................................................................................................................................AAAAAAAAAAGGGTCGGATGGAT.......................................... 23 3 3 0.33 1 1 0 0 0 0 0 0 0
.......................................................................................................................................................................................................................................................................................................AATAAAAAAGGGGCATACGGAA.......................................... 22 3 4 0.25 1 0 1 0 0 0 0 0 0
.........................................................................................................................................................................................................................................................................................................GAAAAAAGGGGCGTACGGAAT......................................... 21 3 6 0.17 1 0 1 0 0 0 0 0 0
...............................................................................................................................................................................................................................................................................................................TTTGTCGTACGGAAGCGGAA.................................... 20 3 7 0.14 1 0 1 0 0 0 0 0 0
.......................................................................................................................................................................................................................................................................................................AAAAAAAAAGGGTCCTATGAA........................................... 21 3 14 0.07 1 0 0 0 0 0 1 0 0
.......................................................................................................................................................................................................................................................................................................................ACGGAAGCGGTACCT................................. 15 1 15 0.07 1 0 0 1 0 0 0 0 0
.................................................................................................................................................................................................................................................................................................................GGTCGTGCGGAAGAGGA..................................... 17 2 17 0.06 1 0 0 0 0 0 0 0 1
..........................................................................................................................................................................................................................................................................................................AAAAAAGGGGCATACGGAAT......................................... 20 3 18 0.06 1 0 1 0 0 0 0 0 0
.......................................................................................................................................................................................................................................................................................................AAAAAAAAAGGGTCCT................................................ 16 1 19 0.05 1 0 0 0 0 0 1 0 0
....................................................................................................................................................AAAAAAATTAGGTGCGT.................................................................................................................................................................................................. 17 2 20 0.05 1 0 0 0 0 0 0 1 0
.........................................................................................................................................................................................................................CTAGGGGCATCAGAG............................................................................................................................... 15 2 20 0.05 1 0 0 0 1 0 0 0 0
..................................................................................................................................................................................................................................................................................................................GTCGTGCGGAAGAGGA..................................... 16 2 20 0.05 1 0 0 0 0 0 0 0 1
.........................................................................................................GGGTGAGAGTACCACA.............................................................................................................................................................................................................................................. 16 2 20 0.05 1 0 0 0 0 0 1 0 0
.....................................................................................................................................................AAAAAATTAGGAAAGT.................................................................................................................................................................................................. 16 1 20 0.05 1 0 0 0 0 0 0 1 0
......................................................................................................................................................................................................................................................................................................AAAAAAAAAAGGGTCC................................................. 16 1 20 0.05 1 0 0 0 0 0 0 1 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim2 3r:1273889-1274247 - dsi_13024 ACGCCCCGCAACCCATTGGAGGAGGTGTCACCATCAGTGCTCCTCACATGGTAACTCAACTCCTAGCCAGGGCATTAAA-------------------------------------------------------------------------------TAAA-----------------------------------------------------------------------------------AAA-------------------------------TTTGC-----------------------TG-------------------TGGGAGCCAAT-GCCCACACTCATGGTGCTTTTAGGAGGA-----------------------------------------------------------------------------------AGCATAAAGAAATGTTTTTTTTTAATCCTCTCA-------------TAGGCCTACTACTAAAAA-ATATTAATGGCTGATCATT--------------------------------------------------------------------------------------------------------------------------------TGAAGACTAGTTCTTCATTCCCGTAGTCTCTTCAAATCATATTCTTATAATTTCTCAAAGTAAA-----GTGTCTTGTTGG-------ACTGAAAATTAATACGTTTT-----TT----TTTTCCCAGCATGCCTTCGCCTTGGAGTACCTACGCGACCAATTGAAGCCCGGTGCACG
droSec2 scaffold_6:1493444-1493801 - ACGCCCCGCAACCCATTGGAGGAGGTGTCACCATCAGTGCTCCTCACATGGTAACTCAACTCCTAGCCAGGGCATTAAA--------------------------------------------------------------------------------AAA-----------------------------------------------------------------------------------AAA-------------------------------TTTGC-----------------------TG-------------------TGGGAGCCAAT-GCCCACACTCATGGTGCTTTTAGGAGGA-----------------------------------------------------------------------------------AGCATAAAGAAATGGCTTTTTTTAATCCTCTCA-------------TAGGTCTTATACTAAAAACATATTAATGGCTCATCATT--------------------------------------------------------------------------------------------------------------------------------TGAAGACTAGTTCTTCATTCCCGCAGTCTCTTCAAATCATATTCTTATAATTTCTCAAAGTAAA-----GTGTCTTGTTGG-------ACTGGAAATTAATACGTTTT------T----CTTTCCCAGCATGCCTTCGCCTTGGAGTACCTACGCGACCAATTGAAGCCCGGTGCACG
dm3 chr3R:1379348-1379702 - ACGCCCCGCAACCCATTGGAGGAGGTGTCACCATCAGTGCTCCTCACATGGTAACTCCTA-----GCCAGGACATTGAA-------------------------------------------------------------------------------AAA-----------------------------------------------------------------------------------CAAATAGTTTGCT----------CGCCAT-----GTTTGC-----------------------TG-------------------TGGGAGTCAAT-GCCCACACTCAAGATGCTTTTAGGAGGC-----------------------------------------------------------------------------------AGCATAAAAAAGTAGCTTTCTTTAATCC----------------------------ACTAAAAACATATCAATGGCTCATCATT--------------------------------------------------------------------------------------------------------------------------------TGAAGACTAGTTCTTCACTCCCGTAGCTTCTTCCCATCATATTCTTATAATTTCTGAAAGTAAA-----GTGTCTTTTTAA-------ACTGGAGATTAATACATTTT------T----CTTTCCCAGCATGCCTTCGCCTTGGAGTATCTACGCGACCACTTGAAGCCCGGTGCACG
droEre2 scaffold_4770:1648311-1648509 - ACGCCCCGCAACCCATAGGAGGAGGTGTCACCATCAGTGCTCCTCACATGGTAACTTAAAAA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAAA--GCTTGCT----------GACCAT-----CTTTGC-----------------------TA-------------------TGTGAGCCAAT-GCCCACACTCACGATTCTTTTAGAAGGA-----------------------------------------------------------------------------------AGCACACAGAAGTTGGTAATTTCAATCCTCTCA-------------TGGCTCTTACACTAA-AGCATTTCTGTGGCTCA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCATCTGA-------------
droYak3 3R:17343453-17343722 - ACGCCCCGCAACCCATAGGTGGAGGTGTCACCATCAGTGCTCCTCACATGGTAACTTAAAAC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAA-----------------------------------------------------------------------------------------AAA-GCCCACACTCACGATTCTTTTAGAAGGA-----------------------------------------------------------------------------------TACCAACGTATGTTGGTAATTTCAC------CA----------------TTCTTATACTAAAAACATTTCTGTGGCTCATCTTCTT-TGTTAGGCT------------------GC--------AAGGCTACGAGATT---------------------------------------------------AATAG----TTGGACTTATTATTT------------------------------------------------------------------------------------------------------GTTTC------A----CTTTCTTAGCATGCCTTCGCCTTGGAGTATCTACGTGATCACTTGAAGCCCGGTGCACA
droEug1 scf7180000409766:323212-323267 - ACGCCCCCCAACCCATCGGAGGTGGTGTCACCATCAGTGCTCCACATATGGTAACT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droBia1 scf7180000296948:3139-3491 + ACGCCCCGCAACCCATCGGAGGTGGTGTAACCATCAGTGCTCCTCATATGGTAACTAAAAGC----CCTCGAC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T----------GACCA----------GC-----------------------TGCCTACTTTAAGGGGTTACATGGGGACTAAG-ATCCAAAATCGGGAA----------AGAATTACATTACTGTTCATTATAAGAGCCTTTTTCGAACTTAAAAGTAGTACAAT----T-TATTTTG-----ATGCACATGAGAAGCATAGGGGGGCTGCG---------------------------TAC--CCCTATTCTAAAG---GTTTCTAAAATGGGTTGTTACGTATGATTT---------------------TT-----T-----GAC---------------------------------------------------------AT-GCTTAATAGCTT----T-ATC-------------------------------------------------------------------------------------------------------------CT--TTTTAACGACGCAGCATGCCTTTGCCTTGGAGTATCTACGCGACCACCTGAAGCCTGGAGCACA
droTak1 scf7180000415754:426705-426782 + ATTAGC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TT------CTT-------------------------------T-----------------------------------------------------------------------------TT--ATTTGACCTCTCAGCATGCCTTCGCCTTGGAGTATCTGCGCGACCACCTGAAGCCTGGAGCTCG
droEle1 scf7180000491021:69264-69319 + ACGCCCCACAACCCATCGGAGGAGGTGTCACCATCAGTGCACCTCATATGGTAACT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droRho1 scf7180000776798:25506-25896 + ACGCCCCGCAACCAATCGGAGGAGGTGTCACCATCAGTGCACCTCATATGGTAACTTAAGAG---GCCTGGGCTAAAAATCACTAGTTTGTGTCATAAATTATATTTCAAAATCAATGAATCGAATAGACCTTTTAGCATAATTGTTACTCTTGCGCACAGAATGTTTTATTCTATTGTTTTTACTTAAATTCGATTGGAGATTTAAGGTAAATTGGTTAGGGAAATTCTAATTCTATTCCATGCAGATAGTTTGAT----------CGAATTTCACA----AGAACATAATTTAACAGGGTTGTTTAGAAAACCTTAAAGGATT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AT--------------------------------------------------------------------------------------------------------------T-GTTCAATAGCTT------CTCTG----------------------------------------------------------------------------------------------------------T--CTC----AATCTCCAGCATGCCTTTGCCTTGGAGTATCTGCGGGACCAACTGAAGCCCGGTGCCCA
droFic1 scf7180000453850:777866-777923 - ATGCCCCGCAACCCATCGGAGGAGGGGTCACCATCAGTGCACCTCACATGGTAACTTA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droKik1 scf7180000302461:802614-802897 - ATGCTCCGCAGCCCATCGGAGGAGGTGTCACCATCAGCGCACCCCATATGGTAACCTGAAAG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CACG--GCTTACATGTATATGTAGAACA----------GC-----------------------AG-------------------GCAGTACCAAA-GCCTAAATGG-------------GA--------------------------------------------------------------------------------------CGCA----------GA-TTTTTTATTTCAATTT-------------------------------------------------------------------------------------------AGAGTTTTAAATTCATAGCTTTCTGTTTAAAGGAATGC-ATTCGCATCGCCCCAAACGTATATCTAA-ACCTAACAGTTT------CTC---------------------------------------------------------------------------------------------------------------CTTTTTGCATATCCAGCATGCTTTTGCATTGGAATATCTGCGCGACCACCTGAAGCCAGGCGCTCA
droAna3 scaffold_13340:23516846-23517196 - ATGCTCCCCAGCCTATTGGCGGAGGTGTCACCATCAGTGCTCCCCACATGGTAACCAGGCTT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CGGGGGCTAAGGGGCCATTTTCAA---------------------------------------------------ATTTTTTTTTCAAACGATCCTTTTGTTTTTTAAACAATTTACATAA-TTGTTTATAA--------------AA------ATTGTT-GTTTATCTT--TACTTATCC------------CCAAACAGCATTTTCT-TACCTAATGGGGAATATTTTATAATTA--GTTATAG--------------------TTTCTGTTAAAAAAG---TAAC-------------------------------------------------------------------------------------------------------AAGTCCAGAACACATGTTTCATTTATTTTTGTATC-CACACTAAAATATCCACA--C-T----TTTGTTCAGCATGCTTTTGCGTTGGAATATCTACGCGATCACCTTAAGCCCGGTGCCCA
droBip1 scf7180000396570:690746-691114 - ATGCTCCCCAGCCCATTGGCGGAGGTGTCACCATCAGTGCTCCTCACATGGTAACCAGGCGT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CGGGGGCTAGG-GCCTAAACAGACACATCTATTGCCAAGAATT---------------------------TTCAACGTT-TAGCTAAAATAAT----CTGATCTTT-----ATTTACATAAGCCGTTTG-----------------AC------CATGTTAGTTTCTCAT--CACTCATCCAAAAACAATTTCTAAAACAGCTTTTCCC-TATTAATTAAGGAGTATTTTATAATTT--CCCACAG--------------------TTTCTGTTCAGAGAGATGT-AC-------------------------------------------------------------------------------------------------------AAATCCAG-----ATGTTTCATTAATTTATGCACC-CACACTAACATATTTA------T----TTCATTCAGCACGCTTTTGCGTTGGAATACCTGCGCGATCACCTCAAGCCGGGTGCCCA
dp5 2:21220955-21221061 + AAGTGTCT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GC--------TGGGTTTTGGATTT---------------------------------------------------AATAC----TAAGGG--GTTTCTTGC----------------------------------------------------------------------------------------------------------A--CTC----TTCGCATAGCACGCCTTTGCATTGGAATATTTGCGCGATCATTTGAAGCCAGGTGCTCA
droPer2 scaffold_3:3998638-3998744 + AAGTGTCT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GC--------TGGGTTTTGGATTT---------------------------------------------------GATAC----TAAGGG--GTTTCTTGC----------------------------------------------------------------------------------------------------------A--CTC----TTCGCATAGCACGCCTTTGCATTGGAATATTTGCGCGATCATTTGAAGCCAGGTGCTCA
droWil2 scf2_1100000004943:3512363-3512416 + ATGCTCCCCAACCTATAGGAGGCGGTGTAACCATCAGTGCTCCACATATGGTAA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droVir3 scaffold_13047:16636367-16636429 + TTTTTC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GACTTAGCACGCCTTTGCTTTGGAATATTTACGCGATCAACTAAAGCCTGGCGCTCA
droMoj3 scaffold_6540:12944461-12944514 + ATGCACCTCAACCTATTGGCGGCGGTGTGACTATCAGCGCCCCCCACATGGTAA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droGri2 scaffold_15116:1600784-1600914 + ---------------------------------------CTCCTCATATGGTAATTATGCAT-------------TCCA-------------------------------------------------------------------------------CAAA-----------------------------------------------------------------------------------ATA-------------------------------TT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAAGTTTT-TATTT---------------------------------------------------AATAT----TAACTC--ATCTCTTGTGGA-----------------------------------------------------------------------------------------------------------------CTTTCACAGCACGCCTTCGCCTTGGAATATCTACGCGATCAGCTAAAGCCCGGCGCCCA

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
ACGCCCCGCAACCCATTGGAGGAGGTGTCACCATCAGTGCTCCTCACATGGTAACTCAACTCCTAGCCAGGGCATTAAA-------------------------------------------------------------------------------TAAA-----------------------------------------------------------------------------------AAA-------------------------------TTTGC-----------------------TG-------------------TGGGAGCCAAT-GCCCACACTCATGGTGCTTTTAGGAGGA-----------------------------------------------------------------------------------AGCATAAAGAAATGTTTTTTTTTAATCCTCTCA-------------TAGGCCTACTACTAAAAA-ATATTAATGGCTGATCATT--------------------------------------------------------------------------------------------------------------------------------TGAAGACTAGTTCTTCATTCCCGTAGTCTCTTCAAATCATATTCTTATAATTTCTCAAAGTAAA-----GTGTCTTGTTGG-------ACTGAAAATTAATACGTTTT-----TT----TTTTCCCAGCATGCCTTCGCCTTGGAGTACCTACGCGACCAATTGAAGCCCGGTGCACGSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACGCGACCAATTGAAGCCCGGTGCA..2612.00200000000000020000
......................................................................................................................................................................................................................................................................................................................................................................TTTAGGAGGA-----------------------------------------------------------------------------------AGCATAAAGAAATG........................................................................................................................................................................................................................................................................................................................................................................................2411.00100000000000010000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACCTACGCGACCAATTGAAGCCCGG......2611.00100000000000010000
..............................CCATCAGTGCTCCTCACATG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00110000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATAATTTCTCAAAGTAAA-----GTGT.........................................................................................................2311.00100000000001000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACCAATTGAAGCCCGGT.....1811.00100010000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCCTTCGCCTTGGAGTACC............................2011.00100000000000100000
....................................................................................................................................................................................................................................................................................................................................................................CTTTTAGGAGGA-----------------------------------------------------------------------------------AGCATAAAGAAATGG.......................................................................................................................................................................................................................................................................................................................................................................................2711.00100000000000010000
droSec2
ACGCCCCGCAACCCATTGGAGGAGGTGTCACCATCAGTGCTCCTCACATGGTAACTCAACTCCTAGCCAGGGCATTAAA--------------------------------------------------------------------------------AAA-----------------------------------------------------------------------------------AAA-------------------------------TTTGC-----------------------TG-------------------TGGGAGCCAAT-GCCCACACTCATGGTGCTTTTAGGAGGA-----------------------------------------------------------------------------------AGCATAAAGAAATGGCTTTTTTTAATCCTCTCA-------------TAGGTCTTATACTAAAAACATATTAATGGCTCATCATT--------------------------------------------------------------------------------------------------------------------------------TGAAGACTAGTTCTTCATTCCCGCAGTCTCTTCAAATCATATTCTTATAATTTCTCAAAGTAAA-----GTGTCTTGTTGG-------ACTGGAAATTAATACGTTTT------T----CTTTCCCAGCATGCCTTCGCCTTGGAGTACCTACGCGACCAATTGAAGCCCGGTGCACGSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
..............ATTGGAGGAGGTGTCACCATCAGTGCT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010100
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTCGCCTTGGAGTACCTA..........................1911.0010010
..............ATTGGAGGAGGTGTCACCA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010001
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGTTGG-------ACTGGAAATTAATACGTTT.......................................................................2611.0010010
dm3
ACGCCCCGCAACCCATTGGAGGAGGTGTCACCATCAGTGCTCCTCACATGGTAACTCCTA-----GCCAGGACATTGAA-------------------------------------------------------------------------------AAA-----------------------------------------------------------------------------------CAAATAGTTTGCT----------CGCCAT-----GTTTGC-----------------------TG-------------------TGGGAGTCAAT-GCCCACACTCAAGATGCTTTTAGGAGGC-----------------------------------------------------------------------------------AGCATAAAAAAGTAGCTTTCTTTAATCC----------------------------ACTAAAAACATATCAATGGCTCATCATT--------------------------------------------------------------------------------------------------------------------------------TGAAGACTAGTTCTTCACTCCCGTAGCTTCTTCCCATCATATTCTTATAATTTCTGAAAGTAAA-----GTGTCTTTTTAA-------ACTGGAGATTAATACATTTT------T----CTTTCCCAGCATGCCTTCGCCTTGGAGTATCTACGCGACCACTTGAAGCCCGGTGCACGSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
......CGCAACCCATTGGAGGAGGTGTCA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2419.0090000000000000000000000000000000000000000000000000000000000000000000000000000000000900000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............TTGGAGGAGGTGTCACCA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1815.0050000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000500000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......GCAACCCATTGGAGGAGGTGTCACCATC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2814.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000030000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000
..............ATTGGAGGAGGTGTCACCATC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000
.........AACCCATTGGAGGAGGTGTCACCATC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2612.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATGCCTTCGCCTTGGAGTATC............................2312.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........ACCCATTGGAGGAGGTGTCACCATCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2712.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........ACCCATTGGAGGAGGTGTCAC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACCACTTGAAGCCCGGTGCA..2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAATACATTTT------T----CTTTCCCAGCATGC.............................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................TGTCACCATCAGTGCTCCTCACATG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........ACCCATTGGAGGAGGTGTCACC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTACGCGACCACTTGAAGCCCGGT.....2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAATACATTTT------T----CTTTCCCAG..................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......GCAACCCATTGGAGGAGGTGTCACCAT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........ACCCATTGGAGGAGGTGTCACCATCA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................AGGTGTCACCATCAGTGCT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCATT--------------------------------------------------------------------------------------------------------------------------------TGAAGACTAGTTCT....................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000
..............ATTGGAGGAGGTGTCACCATCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000
...............TTGGAGGAGGTGTCACCATCAGTGC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000
......CGCAACCCATTGGAGGAGGTGTCACCA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACGCGACCACTTGAAGCCCGGTGCAC.2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........ACCCATTGGAGGAGGTGTCACCATCAGT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCTTGGAGTATCTACGCGACCACT................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATGCCTTCGCCTTGGAGTATCTAC.........................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............ATTGGAGGAGGTGTCACCA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............CCATTGGAGGAGGTGTCACCATCA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGACCACTTGAAGCCCGGTGCAC.2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................GAGGTGTCACCATCAGTGCT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCCAGCATGCCTTCGCCTTGGAG................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......CGCAACCCATTGGAGGAGG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTCTGAAAGTAAA-----GTGTCT.......................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000
..........ACCCATTGGAGGAGGTGTCA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........CAACCCATTGGAGGAGGTGTGC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGGAGTATCTACGCGACCAC.................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATCTACGCGACCACTTGAAGCCCGG......2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTCGCCTTGGAGTATCTACGCGAC....................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000
........CAACCCATTGGAGGAGGTGTC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGTATCTACGCGACCACTTGAAGC..........2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................GGAGGAGGTGTCACCATC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1820.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAA-------ACTGGAGATTAATAAG..........................................................................1930.3310000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000
droEre2
ACGCCCCGCAACCCATAGGAGGAGGTGTCACCATCAGTGCTCCTCACATGGTAACTTAAAAA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAAA--GCTTGCT----------GACCAT-----CTTTGC-----------------------TA-------------------TGTGAGCCAAT-GCCCACACTCACGATTCTTTTAGAAGGA-----------------------------------------------------------------------------------AGCACACAGAAGTTGGTAATTTCAATCCTCTCA-------------TGGCTCTTACACTAA-AGCATTTCTGTGGCTCA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCATCTGA-------------SizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
......CGCAACCCATAGGAGGAGGTGT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010001000
droYak3
ACGCCCCGCAACCCATAGGTGGAGGTGTCACCATCAGTGCTCCTCACATGGTAACTTAAAAC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAA-----------------------------------------------------------------------------------------AAA-GCCCACACTCACGATTCTTTTAGAAGGA-----------------------------------------------------------------------------------TACCAACGTATGTTGGTAATTTCAC------CA----------------TTCTTATACTAAAAACATTTCTGTGGCTCATCTTCTT-TGTTAGGCT------------------GC--------AAGGCTACGAGATT---------------------------------------------------AATAG----TTGGACTTATTATTT------------------------------------------------------------------------------------------------------GTTTC------A----CTTTCTTAGCATGCCTTCGCCTTGGAGTATCTACGTGATCACTTGAAGCCCGGTGCACASizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTACGTGATCACTTGAAGCCCGGTGC...2611.00101000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGATCACTTGAAGCCCGGT.....2011.00100000010000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATCTACGTGATCACTTGAAGCCC........2511.00101000000000
..........ACCCATAGGTGGAGGTGTCAC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100000010000
droEug1
ACGCCCCCCAACCCATCGGAGGTGGTGTCACCATCAGTGCTCCACATATGGTAACT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droBia1
ACGCCCCGCAACCCATCGGAGGTGGTGTAACCATCAGTGCTCCTCATATGGTAACTAAAAGC----CCTCGAC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T----------GACCA----------GC-----------------------TGCCTACTTTAAGGGGTTACATGGGGACTAAG-ATCCAAAATCGGGAA----------AGAATTACATTACTGTTCATTATAAGAGCCTTTTTCGAACTTAAAAGTAGTACAAT----T-TATTTTG-----ATGCACATGAGAAGCATAGGGGGGCTGCG---------------------------TAC--CCCTATTCTAAAG---GTTTCTAAAATGGGTTGTTACGTATGATTT---------------------TT-----T-----GAC---------------------------------------------------------AT-GCTTAATAGCTT----T-ATC-------------------------------------------------------------------------------------------------------------CT--TTTTAACGACGCAGCATGCCTTTGCCTTGGAGTATCTACGCGACCACCTGAAGCCTGGAGCACASizeHit CountTotal NormTotal
No Reads
droTak1
ATTAGC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TT------CTT-------------------------------T-----------------------------------------------------------------------------TT--ATTTGACCTCTCAGCATGCCTTCGCCTTGGAGTATCTGCGCGACCACCTGAAGCCTGGAGCTCGSizeHit CountTotal NormTotal
No Reads
droEle1
ACGCCCCACAACCCATCGGAGGAGGTGTCACCATCAGTGCACCTCATATGGTAACT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droRho1
ACGCCCCGCAACCAATCGGAGGAGGTGTCACCATCAGTGCACCTCATATGGTAACTTAAGAG---GCCTGGGCTAAAAATCACTAGTTTGTGTCATAAATTATATTTCAAAATCAATGAATCGAATAGACCTTTTAGCATAATTGTTACTCTTGCGCACAGAATGTTTTATTCTATTGTTTTTACTTAAATTCGATTGGAGATTTAAGGTAAATTGGTTAGGGAAATTCTAATTCTATTCCATGCAGATAGTTTGAT----------CGAATTTCACA----AGAACATAATTTAACAGGGTTGTTTAGAAAACCTTAAAGGATT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AT--------------------------------------------------------------------------------------------------------------T-GTTCAATAGCTT------CTCTG----------------------------------------------------------------------------------------------------------T--CTC----AATCTCCAGCATGCCTTTGCCTTGGAGTATCTGCGGGACCAACTGAAGCCCGGTGCCCASizeHit CountTotal NormTotal
No Reads
droFic1
ATGCCCCGCAACCCATCGGAGGAGGGGTCACCATCAGTGCACCTCACATGGTAACTTA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droKik1
ATGCTCCGCAGCCCATCGGAGGAGGTGTCACCATCAGCGCACCCCATATGGTAACCTGAAAG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CACG--GCTTACATGTATATGTAGAACA----------GC-----------------------AG-------------------GCAGTACCAAA-GCCTAAATGG-------------GA--------------------------------------------------------------------------------------CGCA----------GA-TTTTTTATTTCAATTT-------------------------------------------------------------------------------------------AGAGTTTTAAATTCATAGCTTTCTGTTTAAAGGAATGC-ATTCGCATCGCCCCAAACGTATATCTAA-ACCTAACAGTTT------CTC---------------------------------------------------------------------------------------------------------------CTTTTTGCATATCCAGCATGCTTTTGCATTGGAATATCTGCGCGACCACCTGAAGCCAGGCGCTCASizeHit CountTotal NormTotal
No Reads
droAna3
ATGCTCCCCAGCCTATTGGCGGAGGTGTCACCATCAGTGCTCCCCACATGGTAACCAGGCTT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CGGGGGCTAAGGGGCCATTTTCAA---------------------------------------------------ATTTTTTTTTCAAACGATCCTTTTGTTTTTTAAACAATTTACATAA-TTGTTTATAA--------------AA------ATTGTT-GTTTATCTT--TACTTATCC------------CCAAACAGCATTTTCT-TACCTAATGGGGAATATTTTATAATTA--GTTATAG--------------------TTTCTGTTAAAAAAG---TAAC-------------------------------------------------------------------------------------------------------AAGTCCAGAACACATGTTTCATTTATTTTTGTATC-CACACTAAAATATCCACA--C-T----TTTGTTCAGCATGCTTTTGCGTTGGAATATCTACGCGATCACCTTAAGCCCGGTGCCCASizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
................TGGCGGAGGTGTCACCATCAGTG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001100000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTACGCGATCACCTTAAGCCCGGTGCCCA2911.001000010
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCACCTTAAGCCCGGTGCCC.2011.001100000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTACGCGATCACCTTAAGCCCGGTGCCC.2811.001010000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGGAATATCTACGCGATC...................2011.001000010
droBip1
ATGCTCCCCAGCCCATTGGCGGAGGTGTCACCATCAGTGCTCCTCACATGGTAACCAGGCGT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CGGGGGCTAGG-GCCTAAACAGACACATCTATTGCCAAGAATT---------------------------TTCAACGTT-TAGCTAAAATAAT----CTGATCTTT-----ATTTACATAAGCCGTTTG-----------------AC------CATGTTAGTTTCTCAT--CACTCATCCAAAAACAATTTCTAAAACAGCTTTTCCC-TATTAATTAAGGAGTATTTTATAATTT--CCCACAG--------------------TTTCTGTTCAGAGAGATGT-AC-------------------------------------------------------------------------------------------------------AAATCCAG-----ATGTTTCATTAATTTATGCACC-CACACTAACATATTTA------T----TTCATTCAGCACGCTTTTGCGTTGGAATACCTGCGCGATCACCTCAAGCCGGGTGCCCASizeHit CountTotal NormTotal
No Reads
dp5
AAGTGTCT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GC--------TGGGTTTTGGATTT---------------------------------------------------AATAC----TAAGGG--GTTTCTTGC----------------------------------------------------------------------------------------------------------A--CTC----TTCGCATAGCACGCCTTTGCATTGGAATATTTGCGCGATCATTTGAAGCCAGGTGCTCASizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATTTGCGCGATCATTTGA.............2011.0010100000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTGCGCGATCATTTGAAG...........2011.0010000001000
droPer2
AAGTGTCT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GC--------TGGGTTTTGGATTT---------------------------------------------------GATAC----TAAGGG--GTTTCTTGC----------------------------------------------------------------------------------------------------------A--CTC----TTCGCATAGCACGCCTTTGCATTGGAATATTTGCGCGATCATTTGAAGCCAGGTGCTCASizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGGAATATTTGCGCGATCA..................2011.001010000
droWil2
ATGCTCCCCAACCTATAGGAGGCGGTGTAACCATCAGTGCTCCACATATGGTAA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
..............ATAGGAGGCGGTGTAACC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1815.00550000
..............ATAGGAGGCGGTGTAACCATCA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2212.00200110
.........AACCTATAGGAGGCGGTGT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00100010
........................GTGTAACCATCAGTGCTCC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00100010
ATGCTCCCCAACCTATAGGAGGC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.00100010
.............TATAGGAGGCGGTGTAAC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.00100010
droVir3
TTTTTC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GACTTAGCACGCCTTTGCTTTGGAATATTTACGCGATCAACTAAAGCCTGGCGCTCASizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGCTTTGGAATATTTACG........................1911.001000000000000000001000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTACGCGATCAACTAAAGCCT........2211.001001000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCTTTGCTTTGGAATATTTAC.........................2211.001001000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGCCTTTGCTTTGGAATAT.............................1911.001000000000000000000100000000000000000000000000000000000000000000
droMoj3
ATGCACCTCAACCTATTGGCGGCGGTGTGACTATCAGCGCCCCCCACATGGTAA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
.TGCACCTCAACCTATTGGCGGC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001000001
droGri2
---------------------------------------CTCCTCATATGGTAATTATGCAT-------------TCCA-------------------------------------------------------------------------------CAAA-----------------------------------------------------------------------------------ATA-------------------------------TT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAAGTTTT-TATTT---------------------------------------------------AATAT----TAACTC--ATCTCTTGTGGA-----------------------------------------------------------------------------------------------------------------CTTTCACAGCACGCCTTCGCCTTGGAATATCTACGCGATCAGCTAAAGCCCGGCGCCCASizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACGCGATCAGCTAAAGCCCGGCGC...2411.00110

Generated: 05/18/2015 at 10:55 AM