ID:

dsi_13020

 Coordinate:

x:6283807-6284085 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-8.7 -8.6 -8.4

Flybase annnotation

intergenic

No Repeatable elements found

Sense Strand Reads

CGTCTGGTGGCAGGGAAACTAACAGCAATCGCCTCTCAAACGAATCGGGTACCCAGAACATCTATCATCGTACTTAAAATCCCGCTTATTATTTTGTATCTCTTGCACGCGCCCAATGAATCCCCTCCCAAGTTTTCGTTAGGCGTATTGTATACATGTTTGTCCTAGATGCTGTAAATAGTTGGCTTTATCCTCCCGCTTCGCCCAGATCCTTTCCACAGATTTTCTCCGGCTTATTATATAATTTCCGCTTGGTTTTGGCTTCCCGTTCCCCACAACGAGATATGCATTTTTGACTATTCCTAACACCACTCTCCTTCCATCGGCAGGTTTCGTGTCGATGCGTGAGTTTCGCACTTGCACACAGACGGCGGACTAC
*********************************************************************************************************************************************************************************************************************..((..(((...)))..))...............(((..(((....((.....((((......)))).((((..((....))..))))..............))..))).)))...************************************************** 		Read size # Mismatch Hit Count Total Norm Total M024
male body		 M025
embryo
 M023
head
 M053
female body
 GSM343915
embryo
 SRR618934
dsim w501 ovaries
 SRR553488
RT_0-2 hours eggs
 SRR902009
testis
 SRR553486
Makindu_3 day-old ovaries
..............................................................................................................................................................................................................................................................................................................................................................TTCGCACTTGCACACAGACGGCGGACT.. 27 0 1 3.00 3 3 0 0 0 0 0 0 0 0
.............................................................................................................................................................................GTACATAGTTGGCTTTGTCCT......................................................................................................................................................................................... 21 2 1 1.00 1 0 0 0 0 1 0 0 0 0
..............GAAACTAACAGCAATCGCCTCTCAAACG................................................................................................................................................................................................................................................................................................................................................. 28 0 1 1.00 1 1 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................................................................................................................................CACTCTCCTTCCATCGGCAG.................................................. 20 0 1 1.00 1 0 1 0 0 0 0 0 0 0
..............................................................................................................................................................................................................................................................................................................................................................TTCGCACTTGCACACAGACGGCGGACTAC 29 0 1 1.00 1 1 0 0 0 0 0 0 0 0
................................................................................................................................................................................................................................................................................................................................................................CGCACTTGCACACAGACGGCGGAC... 24 0 1 1.00 1 1 0 0 0 0 0 0 0 0
................................................................................................................................................................................................................................................................................................................................................................CGCACTTGCACACAGACGACGGAC... 24 1 1 1.00 1 1 0 0 0 0 0 0 0 0
................AACTAACAGCAATCGCCTCG....................................................................................................................................................................................................................................................................................................................................................... 20 1 1 1.00 1 0 0 1 0 0 0 0 0 0
..............................GCCTCTCAAACGAATCGGGT......................................................................................................................................................................................................................................................................................................................................... 20 0 1 1.00 1 1 0 0 0 0 0 0 0 0
...........................ATCGCCTCTCAAACGAATCGGGT......................................................................................................................................................................................................................................................................................................................................... 23 0 1 1.00 1 0 0 0 1 0 0 0 0 0
.....................................................................................................................................................................................................................TTCCACAGATTTTCTCCGGCT................................................................................................................................................. 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0
...............................................................................................................................................................................................................................................TATGATTTCCGCTTGG............................................................................................................................ 16 1 13 0.38 5 0 0 0 0 0 4 1 0 0
...............................................................................................................................................................................................................................................................................................................................CCATCGGAAGGTTGCGTGT......................................... 19 2 8 0.13 1 0 0 0 0 0 1 0 0 0
...............................................................................................................................................................................................................................................................................................................................CCATCGGAAGGTTGCGTG.......................................... 18 2 9 0.11 1 0 0 0 0 0 0 0 1 0
.............................................................................................................................................................................................................................................GGTATAATTTCCGCTTGG............................................................................................................................ 18 2 12 0.08 1 0 0 0 0 0 1 0 0 0
............................................................................................................................................................................TGTAAATCGTTGGCT................................................................................................................................................................................................ 15 1 14 0.07 1 0 0 0 0 0 0 1 0 0
.........................................................................................................................................................................................................................................................................................................................................................TGAGTTTCGAACTTG................... 15 1 14 0.07 1 0 0 0 0 0 1 0 0 0
...CTGGTGGGAGGGAAA......................................................................................................................................................................................................................................................................................................................................................................... 15 1 19 0.05 1 0 0 0 0 0 1 0 0 0
............................................................................................................................................................................................AATCCTCTCGCTTCGACCA............................................................................................................................................................................ 19 3 20 0.05 1 0 0 0 0 0 0 0 0 1
............................................................................................TTTGTATCTCTTGAA................................................................................................................................................................................................................................................................................ 15 1 20 0.05 1 0 0 0 0 0 1 0 0 0

Anti-sense strand reads

GCAGACCACCGTCCCTTTGATTGTCGTTAGCGGAGAGTTTGCTTAGCCCATGGGTCTTGTAGATAGTAGCATGAATTTTAGGGCGAATAATAAAACATAGAGAACGTGCGCGGGTTACTTAGGGGAGGGTTCAAAAGCAATCCGCATAACATATGTACAAACAGGATCTACGACATTTATCAACCGAAATAGGAGGGCGAAGCGGGTCTAGGAAAGGTGTCTAAAAGAGGCCGAATAATATATTAAAGGCGAACCAAAACCGAAGGGCAAGGGGTGTTGCTCTATACGTAAAAACTGATAAGGATTGTGGTGAGAGGAAGGTAGCCGTCCAAAGCACAGCTACGCACTCAAAGCGTGAACGTGTGTCTGCCGCCTGATG
**************************************************..((..(((...)))..))...............(((..(((....((.....((((......)))).((((..((....))..))))..............))..))).)))...********************************************************************************************************************************************************************************************************************* 		Read size # Mismatch Hit Count Total Norm Total SRR553488
RT_0-2 hours eggs
 GSM343915
embryo
 SRR553485
Chicharo_3 day-old ovaries
 SRR553487
NRT_0-2 hours eggs
 SRR553486
Makindu_3 day-old ovaries
 SRR618934
dsim w501 ovaries
 SRR902009
testis
....................................GTTTGCTTAGCCCATGGGTC................................................................................................................................................................................................................................................................................................................................... 20 0 1 1.00 1 0 1 0 0 0 0 0
........................................................................................................................AGGGGAGGTTTCAAAA................................................................................................................................................................................................................................................... 16 1 1 1.00 1 0 0 1 0 0 0 0
.................................................................................................................................................................................................................................................................................................AAAAACTGATAGGGACTGT....................................................................... 19 2 1 1.00 1 1 0 0 0 0 0 0
....................................................................................................................................................................................................GCGAAGCGAATCTAGGAAAG................................................................................................................................................................... 20 2 2 0.50 1 0 0 0 1 0 0 0
..............................................................................................................................................................................................AGGAGAGCGAAGCGGG............................................................................................................................................................................. 16 1 3 0.33 1 0 0 0 0 1 0 0
..................................................................TAACATGAATTTAAAGGCGAAT................................................................................................................................................................................................................................................................................................... 22 3 3 0.33 1 1 0 0 0 0 0 0
..........................................................................................................................................................................................................................................................................................................................AGAAAGCTAGCCGTCCAACG............................................. 20 3 5 0.20 1 0 0 0 0 1 0 0
......................................................................................................................TAAGGGGAGGGTTCA...................................................................................................................................................................................................................................................... 15 1 7 0.14 1 1 0 0 0 0 0 0
........................................................................................................................................................................................................................................................................................................GATAAGGATTGTGGG.................................................................... 15 1 9 0.11 1 0 0 0 0 0 1 0
....................................................................................................................................................................................................................................................................................................................GGTGATAGGATGGTAGC...................................................... 17 2 10 0.10 1 0 0 0 1 0 0 0
..........................................................................................................................................................................................................................................................................................................TAAGGTTTGTGGGGAGAAGA............................................................. 20 3 11 0.09 1 0 0 0 0 0 0 1
.........................................................................................................................................................................................................................................................................................................................................GAAAGCACAGCTACGCC................................. 17 2 11 0.09 1 1 0 0 0 0 0 0
..............................................................................................................................................................AAAAAGGACCTACGACAT........................................................................................................................................................................................................... 18 2 12 0.08 1 0 0 0 0 0 1 0
........................................................................................................................................................AGGAACAAACAGGATCTATG............................................................................................................................................................................................................... 20 3 15 0.07 1 0 1 0 0 0 0 0
.......................................................................................................................................................TTTGTACAATCAGGATCTA................................................................................................................................................................................................................. 19 2 16 0.06 1 0 1 0 0 0 0 0
................................................................................................ATAGGGTACGTGCGCG........................................................................................................................................................................................................................................................................... 16 2 19 0.05 1 0 0 0 0 0 1 0
.....................................................................................................................................................................................................................................................................................................................GTGATAGGATGGTAGC...................................................... 16 2 20 0.05 1 0 0 0 1 0 0 0
.............................................................................................................................................................................................................................................................................................................GGGTTTTGGCGAGAGGAAGGT......................................................... 21 3 20 0.05 1 0 1 0 0 0 0 0
.........................................................................................................................................................................................................................................AACATTATATTAAAGGCG................................................................................................................................ 18 2 20 0.05 1 0 0 0 0 1 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim2 x:6283757-6284135 - dsi_13020 CGTCTGG---TGGCAGGGAAA--------------------------------CT-AACAGCAATCGCCTCTCAAACGAATCGGGTACCCAGAACA----------TCTATCA-----------T-C-------GTACTTAAAATCCCGCTT-----ATTAT-TTTGTATCTCTTGCACG---------CGCCCAATGA-ATCCCCTCCC-----------------------------------------A-A----------------------------------------------------------------------------------------------------------------------------GTTTTCGTTAGGCGTA---TTGTATACATGTTTGTCC-------------TAGATGCT---GTAAATAGTT-GGCTTTATCCTC--CCGC--------TTCGCCCA---------GA-----TCCTTTCCA---CAGATTTTCT-CCG------------GCTTA---------------------------------------------------------------------------------------------------------------------------------------------------------------------TTATATAATTTCCGCTTGGTTTT------GGCTTCCCGTTCCCCAC--------------------------------------------------------------------------------------------------AACGAGA------TATGCATTTT-TGA---CTATTCCTAACAC-CACTCT------CCTTCC-ATCGGCAGGTTTCGTGTCGATGCGTGAGTTTCGCACTTGCACACAGAC---------------GGCGGACTAC
droSec2 scaffold_4:114150-114528 + CGTCTGG---TGGCAGGGAAA--------------------------------CT-AACAGCAATCGCCTCTCAAACGAATCGGGTACCCAGAACA----------TCTATCA-----------T-C-------GTACTTAAAATCCCGCTT-----ATTAT-TTTGTATCTGTTGCACG---------CGCCCAATGA-ATCCCCTCCC-----------------------------------------A-A----------------------------------------------------------------------------------------------------------------------------TTTTTCGTTAGGCGTG---TTGTACACATGTTTGTCC-------------TAGATGCT---GTAAATAGTT-GGCTTTATCCTC--CCGC--------TTCGCCCT---------GA-----TCCTTTCCA---CAGATTTTCT-CCG------------GCTTA---------------------------------------------------------------------------------------------------------------------------------------------------------------------TTGTATAATTTCCGCTTGGTTTT------GGCTTCCCGTTCCCCAC--------------------------------------------------------------------------------------------------AACGAGA------TATGCATTTT-TGA---CTATTGCTAACAC-CACTCT------CCTTCC-ATCGGCAGGTTTCGTGTCGATGCGTGAGTTTCGCACTTGCACACAGTC---------------GGCGGACTAC
dm3 chrX:6680796-6681176 - CGTCTGG---TGACGGGGAAA--------------------------------CT-AACAGCAATCGCCACTCAAACGAATCGGGTACCCAGAACA----------TCTATCA-----------T-C-------GTACTTAAAATCCCGCTT-----ATTAT-TTTGTATCTGTTGCACG---------CGCCCAATGA-ATTCCCTTCC-----------------------------------------AAA----------------------------------------------------------------------------------------------------------------------------TTTTTCGTTAGGCGTA---TTGTATACATGTTTGTCC-------------TAGATGCT---GTAAATAGTT-GGCTTTATTCTC--CCGCC-------TCCGTAAT---------GA-----TCCTTTCCA---CAGATTTCCT-CCG------------GCTTA---------------------------------------------------------------------------------------------------------------------------------------------------------------------TTATATAATTTCCGCTTGGTTTT------GGCTACCCGTTCCCCAC--------------------------------------------------------------------------------------------------AACGAGA------ACTGCATTTT-TGA---CCATTTCTAACAC-CACTCT------CCTTCC-ATCGCCAGGTTTCGTGTCGATGCGTGAGTTTCGCACTTCCACACAGAC---------------GACGGACTAC
droEre2 scaffold_4690:15608714-15609089 - CGACTGG---TGGCGGGGAAA--------------------------------CT-AACAGCAATCGCCTCTCAAACGAATCGGGTACCCAGAACA----------TCAGTCA-----------T-C-------CTACTTAAAATCCCGCTT-----CTGAT-TTTGTAACTGTTGCACG---------TGCCCAATGA-ATCCCCTCCC-----------------------------------------A-A----------------------------------------------------------------------------------------------------------------------------TTTATCGTTAGGCTTA--ATTGTACATATGTTTTGCC-------------T--TTGTA---GTAAATAGTT-GGCTTTATCCCT--CCGCC-------CGCCTCCT---------GA-----TCCGTTCCC---CAGTTTGTCT-CCG------------GCATA---------------------------------------------------------------------------------------------------------------------------------------------------------------------TTATTTAATTTGCGCTTGGTTTT------GGCTACCTGTTTCCCAC--------------------------------------------------------------------------------------------------AGCGAGT------TCCTTATTTT-TGA---CTATTTGTAACAA----TCT------CCTTCC-ACCGGCAGGTTTCGTGTCGATGCGCGAGTTTCGCACTTCCACACAGAC---------------GACGGACTAC
droYak3 X:2646712-2647109 - CGACTGG---TGGCGGGGAAA--------------------------------CT-AACAGCAATCGCCACTCAAACGAATCGGGTACCCAGAACA----------TCTATCA-----------T-C-------GTACTTAAAATCCCGCTT-----ATTAT-TTTGTATCTGTTGCACGGCCAATGCACGGCCAATGA-ATCCCCTCCC-----------------------------------------A-A----------------------------------------------------------------------------------------------------------------------------TTCATCGTTAGGCATT---TTGTATCTATGTTTGTCCAGA--CTCATCAATAGATGCT---GTAAAAAGTT-GGCTTTATCCTC--CCGCC-------TTCCACCT---------GA-----TCCTTTCCA---CGGCTTTCCT-TCG------------GCTTA---------------------------------------------------------------------------------------------------------------------------------------------------------------------TTATTTAATTATCGCTTGGTTTT------GGCTTCCAATTACCCAC--------------------------------------------------------------------------------------------------AACGAGG------TCTGCACTTTCGGA---CTATTTCTAACGC----TCT------CCTTCC-ATCGGCAGGTTTCGTGTCGATGCGCGAGTTTCGCACTTCCACACAGAC---------------GACGGACTAC
droEug1 scf7180000409095:7353-7810 - CGTCTAG---TGGCGGGGAAA--------------------------------CT-AACAGCAATCGCCACTCAAACGAATCGGGTACCCAGAACA----------TCTATAA-----------T-C-------GTAGTTACAGTCCCGCTT-----AATAGATTTATAT--------------------------------------------ATATATATATAAATCGTATATTCCCTTGCCCTTCCC-G-ACTTTCGTTACTCCTTTTTTGATCTCATGGCTTAATTTTAGTTTTTA--------AAGTATACGCATTATAT------------------TAAAGCTTTTCCAT----------------------TTCCCATTAGGCTTTTC-CTGTATATATTTTT----AAGCACATATCGTTTAAGGCT---GTAAATAGTTTGGCTTGATTCCC--CCAC--------CTTTCCTT---------TT-----TCCTTTCCA---CTGCTTTTCT-CCT------------GTATA---------------------------------------------------------------------------------------------------------------------------------------------------------------------TTGTTTAATTTCCGCTTGGTTTT------GGCATTCTGTTCCCCAT---------------------------------------------------------------------------------------------------------------------TTAT-GGA---CTATTTTTAACCA----TCT------CCTTCC-ATCGGCAGGTTTCGTTTCGATGCGCGAGTTCCGCACCTCCACGCAGAC---------------GACGGACTAC
droBia1 scf7180000301760:1925877-1926342 + CGGCTGG---TGGCGGGGAGA--------------------------------CT-AACAGCAATCGCCACTCAAACGAATCGGGTACCCAGAACA----------TCTATCA-----------T-C-------GTACTTACAATCCCGCTTTACGTATAAT-TTTGTATCCGTTGCACC---------TGGCGAAATA-CACCCCTCCGATCCA-------CTTAATG-------------------------------------CGC-TTTG---TAAAGACGCCATTTTATTTTGTAAGGCTTT-----ATAC-CATTAGA--AAATAAGTTTGAGCACTCAGAGCTTTGGCCT----------------------------TTGGGCCTT---CTGTATATACTTC-C--CACA--CACATCGATAGCTGCT---GTAAATAGTTTGACCT------C--CAAC--------CTTTTCTTTATACCGCCTATCCTGCCCTTCCCA---C---TTTCCC-TGT------------GTATA---------------------------------------------------------------------------------------------------------------------------------------------------------------------TTCTTTAATTTCCGCTTGGTTTTGGATTTGGCTTCCCATTCCCCGC--------------------------------------------------------------------------------------------------AACGTAT------GCTAAGTTAT-GGC---CTATTTTTAAACC--TCTCT-CTCCACCTTCC-CCCGGCAGGTTTCGTCTCGATGCGCGAGTTCCAG---------------------------------------
droTak1 scf7180000413955:145269-145406 - TCTCTC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGT------------GTATA---------------------------------------------------------------------------------------------------------------------------------------------------------------------CTGCTTAATTTCCGCTTGGTTTT------GGCTCCCTATTCCCCCC--------------------------------------------------------------------------------------------------GTCGCCT----------CCTTTT-AGAACTCTATTTTTAACCC--AGTCTCCTCCTCCTTCCAACCGACAGGCTTCGTTTCGATGCGCGAGTTCCAG---------------------------------------
droEle1 scf7180000491044:595079-595559 - TGGCTGG---TGGCGGGGAAA--------------------------------CT-AACAGCAATCGCCACTCAAACGAATCGGGTACCCAAAAA----CAAATAATCTATCA-----------A-C-------GTAGTTACAAGCCTGCTT-----TATAT-TTTGTATCCGTTATCCA----------ACCTGGTGACATTTCCTTTCCTGCATAAATATGTTAATG------------------------------------------TTG---TAA-AGCTTAATTG-------GCAGACTTTAAAAT---TGCATAAAAATAAATACATTGGAG--------GCTTTAGCCTTT--------------------CTCACACTAGGCTTT---CTGTACATATATTTT--TAAA--CACATCAACAGCTGGTGTAA-AAATAGTTTGGCTTGATTCCCTTCCC----------------------------------CCCTCCCA---CTGCTTCTCT-CCTCTAT----ATT-ATTTA---------------------------------------------------------------------------------------------------------------------------------------------------------------------TTATTTACTTTTCGCTTGGTTTT------GGCTTGCTGTTTACC-T----------------------------------------------------------------------------------GTTACCTGTTATCCACAACTCAC------ACTGATTTAT-GGA---CTATTTTTAACGC----TCT------CCTTTCGACCGGCAGGTTTCGTTTCGATGCGTGAGTTTCGCACCTCCACGCAAAC---------------AG--------
droRho1 scf7180000776942:275281-275539 - TTC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACGCTAGGCTTT---CTGTATATATTTTT----AAA--CACATCGACAAATGCT---GTAAATAGTTTGACTTCATTCCT-CCCGCCCTCCCGCCTTTTCCC---------TTTC---TTCTCCCTA---CTGCTTTTCT-CCT------------GTGTA---------------------------------------------------------------------------------------------------------------------------------------------------------------------TTATTTAATTTCCGCTTGGTTTT------GGCTTCCTATTCCCCAC--------------------------------------------------------------------------------------------------AACGTAC------TCTGAATTAT-GGA---CTATTTTTAACAC----TCT------CCTTCC-GCCGGCAGGTTTCGTTTCGATGCGCGAGTTTCGCACCTCCACGCAGAC---------------GACGGA----
droFic1 scf7180000454072:727864-728321 + CGACTGGTGGTGGCGGGGAGA--------------------------------CT-AACAGCAATCGCCACTCAAACGAATCGGGTACCCAGAAAA-AACAAACAA-CTAT------C-TACTATCC-------GTAGCTACCATCCCGACC-----TGCAGCTCC-T---------------------------------------C------------------------------CTCCTCCTCCTCTA-CTTTCCACTTCCCTCCC--------------------------------------------------------------------G--------GCTTTCTTCCTCCCCATGCTCCATGTGCTCCTCCATGCTTTGGCTTG---CTGTACACCTGTTCC--CGAG--CAGGTCGACAGATGCT---GTAAATAGTTCGGCTTGGCTCCT--CC--------------TCTC---------CTCC---GCCTTCCCA---CCGCCG-TCC-CCT------------TTAAG---------------------------------------------------------------------------------------------------------------------------------------------------------------------CTGTTTAATTTCCGCTTGGTTTC------GGCTTCCTGCTCCCCGTTTTCTCTTCCCTCTTCTCTGTTATCCGTTCTCTTTTATCCGTTCATTGTTATCCGTTCTCTGTTATCCGTTCTCTGTTATATGTTAACTGTTCTC---CACGAGAACACACTCTCCAGCAC-GGG---TTCTTTTTAA------------------------------------------------------------------------------------------------
droKik1 scf7180000302610:385216-385588 - GG--------CGGCAGCAGCA--------------------------------CTCACCAGCAATCGGCACTCCAATGAATCCGGTACCTACTCACAGACAGAAAATCCT--A---GCTCACTAGCT-------GT-TACAAAGTTCTGCTC-----CTCCT-GC-----------------------------TATGA-------------------------------------------------------GTTCCGTTACCCCTCC--------------------------------------------------------------------G--------CCCTCCC------------------------CCTTTCCCTAGTTATC---CTGGACCTGCGCCTGT----------------ATATAGC---ATAAATGC--------------CA-CT--C-------CTCCTCCT---------GC-----TTTCTCCCC---TCGTT----------TAT----TTTTG-TTTTTGTATTCCCCCTTTTTGGTTATGGCTTTCTTGTTGATTTTTTTCTGCCTTTTCTTGGCTTTTCTCTT------------------------------ATTTTTGTTGTTGTTATTGTTG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGT-TCCCTTAGGTTTTGTGTCCATGAAGTCGTTTCGCACCTCCACGCAGAG---------------CGTGTCCAAG
droAna3 scaffold_13117:4471083-4471452 - TGGCTGG---TGGCGGGGAAAGTAATACGGAACTGCGGAAAGCAGCCGCGGCACTCACCATCAATCGCCATTCCAACGAATCGGGTACTGGCT--A----------TGACCTATGACC-TATGACCTATGACTAGCACTACTACTTCCGCTA-----CTA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCACTACTAGTCTGCTTCTAT----TTCTGCTTCTTGTAATGCCCGCTT---------------------------------------------------TAAGTGTTGT--AGTCTACTCCTCTTCCCTTTAATTTTGTTACCATT--TTTTGTGTCCACATCCGCTTAATCCTCAAGAGCTTTCAAGAGCTTCT---------------------------------------------------------------------------------------------------------------------------------------------------AA----------------------------------CTGACTC-TGCTCC------CTCTCC-TGCTTTAGGTTTCGTGTCCATGAAGTCATATCGCACCTCCACCCAAAGCGTGTCGAAGCGCTCCTCGGACTAC
droBip1 scf7180000395928:29979-30291 + CGCAAGG---CGGCCGCGGCA--------------------------------CTCACCATCAACCGCCATTCGAACGAATCGGGTACT--GGCTA----------TGACCTA-----------T-T-------GTACTACCACTTCCGCTA-----CTA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCACTACTAG----CTTCTACTAGCTCCTGCTTTCTGTAATATCCGC-------------------------------------TTGCTTGGTTTTTCTTTGAGTGTTGTGTAGCC-----TTCGCTTCCTTAGTTTTGTTCCC------------TCAGTGTCTCCTCAACCCACCTCAGCCCA-------CTCTAATT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------GGA---T------------------TCCTTCTCCT-CC-CGGTACAGGTTTCGTGTCCATGAAGTCGTTCCGCACCTCCACCCAGAGCGTGTCCAAGCGCTCCTCGGACTAC
dp5 XL_group1a:6505864-6505974 - TTCCTAA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTCTATTCCC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCTCTTTTT--CGTCCA----------CTCTTC-TGCGGCAGGTTTCGTGTCGATGAAGTCGTTCCGCACATCCACGCAGAGCGTCTCCAAGCGCTCCTCGGACTAC
droPer2 scaffold_25:809414-809524 + TTCCTAA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTCTATTCCC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCTCTCTTT--CGTCCA----------CTCTTC-TGCGGCAGGTTTCGTGTCGATGAAGTCGTTCCGCACATCCACGCAGAGCGTCTCCAAGCGCTCCTCGGACTAC
droWil2 scf2_1100000004909:7980945-7980997 + CGTAAGG---CAGCCGATATT--------------------------------CTAACCAGCAATCGTCATTCAAATGAATCGGGTAC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droVir3 scaffold_12928:4045953-4046014 - CGC--------------------------------------------------TA-ACCAGCAATCGTCATTCGAATGAATCGGGTATTCCAGGCA----------ATTACTT-----------A-T-------ATATCTAA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droMoj3 scaffold_6359:635337-635427 - CGCAAAG---CGGCGGCTGAG--------------------------------TTAACCAGCAATCGTCATTCAAATGAATCGGGTATTTCTTCTA------------------------------------------------------TA-----CTT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTACT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCTTAGCAACTTCTATCGCT-----------
droGri2 scaffold_14853:621704-621772 + -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCAGGTTTCGTGTCGATGATGTCATTTCGTACGTCCTCGCATAGCGTTTCCAAGCGATCCTCTGAGCAC

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
CGTCTGG---TGGCAGGGAAA--------------------------------CT-AACAGCAATCGCCTCTCAAACGAATCGGGTACCCAGAACA----------TCTATCA-----------T-C-------GTACTTAAAATCCCGCTT-----ATTAT-TTTGTATCTCTTGCACG---------CGCCCAATGA-ATCCCCTCCC-----------------------------------------A-A----------------------------------------------------------------------------------------------------------------------------GTTTTCGTTAGGCGTA---TTGTATACATGTTTGTCC-------------TAGATGCT---GTAAATAGTT-GGCTTTATCCTC--CCGC--------TTCGCCCA---------GA-----TCCTTTCCA---CAGATTTTCT-CCG------------GCTTA---------------------------------------------------------------------------------------------------------------------------------------------------------------------TTATATAATTTCCGCTTGGTTTT------GGCTTCCCGTTCCCCAC--------------------------------------------------------------------------------------------------AACGAGA------TATGCATTTT-TGA---CTATTCCTAACAC-CACTCT------CCTTCC-ATCGGCAGGTTTCGTGTCGATGCGTGAGTTTCGCACTTGCACACAGAC---------------GGCGGACTACSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCGCACTTGCACACAGAC---------------GGCGGACT..2713.00303000000000000000
.................GAAA--------------------------------CT-AACAGCAATCGCCTCTCAAACG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.00101000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACTCT------CCTTCC-ATCGGCAG.................................................................2011.00100100000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCGCACTTGCACACAGAC---------------GGCGGACTAC2911.00101000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGCACTTGCACACAGAC---------------GGCGGAC...2411.00101000000000000000
...................AA--------------------------------CT-AACAGCAATCGCCTCG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00110000000000000000
..................................................................GCCTCTCAAACGAATCGGGT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00101000000000000000
...............................................................ATCGCCTCTCAAACGAATCGGGT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.00100010000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCCA---CAGATTTTCT-CCG------------GCT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100100000000000000
droSec2
CGTCTGG---TGGCAGGGAAA--------------------------------CT-AACAGCAATCGCCTCTCAAACGAATCGGGTACCCAGAACA----------TCTATCA-----------T-C-------GTACTTAAAATCCCGCTT-----ATTAT-TTTGTATCTGTTGCACG---------CGCCCAATGA-ATCCCCTCCC-----------------------------------------A-A----------------------------------------------------------------------------------------------------------------------------TTTTTCGTTAGGCGTG---TTGTACACATGTTTGTCC-------------TAGATGCT---GTAAATAGTT-GGCTTTATCCTC--CCGC--------TTCGCCCT---------GA-----TCCTTTCCA---CAGATTTTCT-CCG------------GCTTA---------------------------------------------------------------------------------------------------------------------------------------------------------------------TTGTATAATTTCCGCTTGGTTTT------GGCTTCCCGTTCCCCAC--------------------------------------------------------------------------------------------------AACGAGA------TATGCATTTT-TGA---CTATTGCTAACAC-CACTCT------CCTTCC-ATCGGCAGGTTTCGTGTCGATGCGTGAGTTTCGCACTTGCACACAGTC---------------GGCGGACTACSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
.....GG---TGGCAGGGAAA--------------------------------CT-AAC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010010
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGCACTTGCACACAGTC---------------GG........1911.0010010
dm3
CGTCTGG---TGACGGGGAAA--------------------------------CT-AACAGCAATCGCCACTCAAACGAATCGGGTACCCAGAACA----------TCTATCA-----------T-C-------GTACTTAAAATCCCGCTT-----ATTAT-TTTGTATCTGTTGCACG---------CGCCCAATGA-ATTCCCTTCC-----------------------------------------AAA----------------------------------------------------------------------------------------------------------------------------TTTTTCGTTAGGCGTA---TTGTATACATGTTTGTCC-------------TAGATGCT---GTAAATAGTT-GGCTTTATTCTC--CCGCC-------TCCGTAAT---------GA-----TCCTTTCCA---CAGATTTCCT-CCG------------GCTTA---------------------------------------------------------------------------------------------------------------------------------------------------------------------TTATATAATTTCCGCTTGGTTTT------GGCTACCCGTTCCCCAC--------------------------------------------------------------------------------------------------AACGAGA------ACTGCATTTT-TGA---CCATTTCTAACAC-CACTCT------CCTTCC-ATCGCCAGGTTTCGTGTCGATGCGTGAGTTTCGCACTTCCACACAGAC---------------GACGGACTACSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCGTGTCGATGCGTGAGTTTCG........................................2312.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCGTGTCGATGCGTGAGTTTCGCA......................................2512.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000001000000000
..TCTGG---TGACGGGGAAA--------------------------------CT-AAC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010
...................AA--------------------------------CT-AACAGCAATCGCCACTCAAACGAAT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..TCTGG---TGACGGGGAAA--------------------------------CT-A...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
....................................................................CACTCAAACGAATCGGGT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACTCT------CCTTCC-ATCGCCA..................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000
.............CGGGGAAA--------------------------------CT-AACAGCAATCGCCACTC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACTCT------CCTTCC-ATCGCCAG.................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000
......................................................T-AACAGCAATCGCCACTCAAACGAA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........GACGGGGAAA--------------------------------CT-AACAGCAATCGCCACT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCGTGAGTTTCGCACTTCCACA..............................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTCGTGTCGATGCGTGA..............................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000
.....................................................CT-AACAGCAATCGCCACTCAAACGAATCGG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................3011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................GAAA--------------------------------CT-AACAGCAATCGCCACTCA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............GGGGAAA--------------------------------CT-AACAGCAATCGCCACTC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTCGTGTCGATGCGTGAGTT...........................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................TCTATCA-----------T-C-------GTACTTAAA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................AACGAATCGGGTACCCAGAACA----------T.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..TCTGG---TGACGGGGAAA--------------------------------CT-AACAGCAATC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......G---TGACGGGGAAA--------------------------------CT-AACA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................GGAAA--------------------------------CT-AACAGCAATCGCCAC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
droEre2
CGACTGG---TGGCGGGGAAA--------------------------------CT-AACAGCAATCGCCTCTCAAACGAATCGGGTACCCAGAACA----------TCAGTCA-----------T-C-------CTACTTAAAATCCCGCTT-----CTGAT-TTTGTAACTGTTGCACG---------TGCCCAATGA-ATCCCCTCCC-----------------------------------------A-A----------------------------------------------------------------------------------------------------------------------------TTTATCGTTAGGCTTA--ATTGTACATATGTTTTGCC-------------T--TTGTA---GTAAATAGTT-GGCTTTATCCCT--CCGCC-------CGCCTCCT---------GA-----TCCGTTCCC---CAGTTTGTCT-CCG------------GCATA---------------------------------------------------------------------------------------------------------------------------------------------------------------------TTATTTAATTTGCGCTTGGTTTT------GGCTACCTGTTTCCCAC--------------------------------------------------------------------------------------------------AGCGAGT------TCCTTATTTT-TGA---CTATTTGTAACAA----TCT------CCTTCC-ACCGGCAGGTTTCGTGTCGATGCGCGAGTTTCGCACTTCCACACAGAC---------------GACGGACTACSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A---------------------------------------------------------------------------------------------------------------------------------------------------------------------TTATTTAATTTGCGCTTGGTTTT------GG.........................................................................................................................................................................................................................................................2611.0010000100
...............................................................ATCGCCTCTCAAACGAATCG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000100
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GA-----TCCGTTCCC---CAGTTTGTCT-CCG------------GC................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010100000
...............................................................................................................................................ATCCCGCTT-----CTGAT-TTTGTAACTGTT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000010
droYak3
CGACTGG---TGGCGGGGAAA--------------------------------CT-AACAGCAATCGCCACTCAAACGAATCGGGTACCCAGAACA----------TCTATCA-----------T-C-------GTACTTAAAATCCCGCTT-----ATTAT-TTTGTATCTGTTGCACGGCCAATGCACGGCCAATGA-ATCCCCTCCC-----------------------------------------A-A----------------------------------------------------------------------------------------------------------------------------TTCATCGTTAGGCATT---TTGTATCTATGTTTGTCCAGA--CTCATCAATAGATGCT---GTAAAAAGTT-GGCTTTATCCTC--CCGCC-------TTCCACCT---------GA-----TCCTTTCCA---CGGCTTTCCT-TCG------------GCTTA---------------------------------------------------------------------------------------------------------------------------------------------------------------------TTATTTAATTATCGCTTGGTTTT------GGCTTCCAATTACCCAC--------------------------------------------------------------------------------------------------AACGAGG------TCTGCACTTTCGGA---CTATTTCTAACGC----TCT------CCTTCC-ATCGGCAGGTTTCGTGTCGATGCGCGAGTTTCGCACTTCCACACAGAC---------------GACGGACTACSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
.....................................................................ACTCAAACGAATCGGGTACCCA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.00101000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGGTTTCGTGTCGATGCGCGAGTT...........................................2611.00100000010000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGTTTCGCACTTCCACACAGAC---------------GACG......2711.00101000000000
droEug1
CGTCTAG---TGGCGGGGAAA--------------------------------CT-AACAGCAATCGCCACTCAAACGAATCGGGTACCCAGAACA----------TCTATAA-----------T-C-------GTAGTTACAGTCCCGCTT-----AATAGATTTATAT--------------------------------------------ATATATATATAAATCGTATATTCCCTTGCCCTTCCC-G-ACTTTCGTTACTCCTTTTTTGATCTCATGGCTTAATTTTAGTTTTTA--------AAGTATACGCATTATAT------------------TAAAGCTTTTCCAT----------------------TTCCCATTAGGCTTTTC-CTGTATATATTTTT----AAGCACATATCGTTTAAGGCT---GTAAATAGTTTGGCTTGATTCCC--CCAC--------CTTTCCTT---------TT-----TCCTTTCCA---CTGCTTTTCT-CCT------------GTATA---------------------------------------------------------------------------------------------------------------------------------------------------------------------TTGTTTAATTTCCGCTTGGTTTT------GGCATTCTGTTCCCCAT---------------------------------------------------------------------------------------------------------------------TTAT-GGA---CTATTTTTAACCA----TCT------CCTTCC-ATCGGCAGGTTTCGTTTCGATGCGCGAGTTCCGCACCTCCACGCAGAC---------------GACGGACTACSizeHit CountTotal NormTotal
No Reads
droBia1
CGGCTGG---TGGCGGGGAGA--------------------------------CT-AACAGCAATCGCCACTCAAACGAATCGGGTACCCAGAACA----------TCTATCA-----------T-C-------GTACTTACAATCCCGCTTTACGTATAAT-TTTGTATCCGTTGCACC---------TGGCGAAATA-CACCCCTCCGATCCA-------CTTAATG-------------------------------------CGC-TTTG---TAAAGACGCCATTTTATTTTGTAAGGCTTT-----ATAC-CATTAGA--AAATAAGTTTGAGCACTCAGAGCTTTGGCCT----------------------------TTGGGCCTT---CTGTATATACTTC-C--CACA--CACATCGATAGCTGCT---GTAAATAGTTTGACCT------C--CAAC--------CTTTTCTTTATACCGCCTATCCTGCCCTTCCCA---C---TTTCCC-TGT------------GTATA---------------------------------------------------------------------------------------------------------------------------------------------------------------------TTCTTTAATTTCCGCTTGGTTTTGGATTTGGCTTCCCATTCCCCGC--------------------------------------------------------------------------------------------------AACGTAT------GCTAAGTTAT-GGC---CTATTTTTAAACC--TCTCT-CTCCACCTTCC-CCCGGCAGGTTTCGTCTCGATGCGCGAGTTCCAG---------------------------------------SizeHit CountTotal NormTotal
No Reads
droTak1
TCTCTC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGT------------GTATA---------------------------------------------------------------------------------------------------------------------------------------------------------------------CTGCTTAATTTCCGCTTGGTTTT------GGCTCCCTATTCCCCCC--------------------------------------------------------------------------------------------------GTCGCCT----------CCTTTT-AGAACTCTATTTTTAACCC--AGTCTCCTCCTCCTTCCAACCGACAGGCTTCGTTTCGATGCGCGAGTTCCAG---------------------------------------SizeHit CountTotal NormTotal
No Reads
droEle1
TGGCTGG---TGGCGGGGAAA--------------------------------CT-AACAGCAATCGCCACTCAAACGAATCGGGTACCCAAAAA----CAAATAATCTATCA-----------A-C-------GTAGTTACAAGCCTGCTT-----TATAT-TTTGTATCCGTTATCCA----------ACCTGGTGACATTTCCTTTCCTGCATAAATATGTTAATG------------------------------------------TTG---TAA-AGCTTAATTG-------GCAGACTTTAAAAT---TGCATAAAAATAAATACATTGGAG--------GCTTTAGCCTTT--------------------CTCACACTAGGCTTT---CTGTACATATATTTT--TAAA--CACATCAACAGCTGGTGTAA-AAATAGTTTGGCTTGATTCCCTTCCC----------------------------------CCCTCCCA---CTGCTTCTCT-CCTCTAT----ATT-ATTTA---------------------------------------------------------------------------------------------------------------------------------------------------------------------TTATTTACTTTTCGCTTGGTTTT------GGCTTGCTGTTTACC-T----------------------------------------------------------------------------------GTTACCTGTTATCCACAACTCAC------ACTGATTTAT-GGA---CTATTTTTAACGC----TCT------CCTTTCGACCGGCAGGTTTCGTTTCGATGCGTGAGTTTCGCACCTCCACGCAAAC---------------AG--------SizeHit CountTotal NormTotal
No Reads
droRho1
TTC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACGCTAGGCTTT---CTGTATATATTTTT----AAA--CACATCGACAAATGCT---GTAAATAGTTTGACTTCATTCCT-CCCGCCCTCCCGCCTTTTCCC---------TTTC---TTCTCCCTA---CTGCTTTTCT-CCT------------GTGTA---------------------------------------------------------------------------------------------------------------------------------------------------------------------TTATTTAATTTCCGCTTGGTTTT------GGCTTCCTATTCCCCAC--------------------------------------------------------------------------------------------------AACGTAC------TCTGAATTAT-GGA---CTATTTTTAACAC----TCT------CCTTCC-GCCGGCAGGTTTCGTTTCGATGCGCGAGTTTCGCACCTCCACGCAGAC---------------GACGGA----SizeHit CountTotal NormTotal
No Reads
droFic1
CGACTGGTGGTGGCGGGGAGA--------------------------------CT-AACAGCAATCGCCACTCAAACGAATCGGGTACCCAGAAAA-AACAAACAA-CTAT------C-TACTATCC-------GTAGCTACCATCCCGACC-----TGCAGCTCC-T---------------------------------------C------------------------------CTCCTCCTCCTCTA-CTTTCCACTTCCCTCCC--------------------------------------------------------------------G--------GCTTTCTTCCTCCCCATGCTCCATGTGCTCCTCCATGCTTTGGCTTG---CTGTACACCTGTTCC--CGAG--CAGGTCGACAGATGCT---GTAAATAGTTCGGCTTGGCTCCT--CC--------------TCTC---------CTCC---GCCTTCCCA---CCGCCG-TCC-CCT------------TTAAG---------------------------------------------------------------------------------------------------------------------------------------------------------------------CTGTTTAATTTCCGCTTGGTTTC------GGCTTCCTGCTCCCCGTTTTCTCTTCCCTCTTCTCTGTTATCCGTTCTCTTTTATCCGTTCATTGTTATCCGTTCTCTGTTATCCGTTCTCTGTTATATGTTAACTGTTCTC---CACGAGAACACACTCTCCAGCAC-GGG---TTCTTTTTAA------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droKik1
GG--------CGGCAGCAGCA--------------------------------CTCACCAGCAATCGGCACTCCAATGAATCCGGTACCTACTCACAGACAGAAAATCCT--A---GCTCACTAGCT-------GT-TACAAAGTTCTGCTC-----CTCCT-GC-----------------------------TATGA-------------------------------------------------------GTTCCGTTACCCCTCC--------------------------------------------------------------------G--------CCCTCCC------------------------CCTTTCCCTAGTTATC---CTGGACCTGCGCCTGT----------------ATATAGC---ATAAATGC--------------CA-CT--C-------CTCCTCCT---------GC-----TTTCTCCCC---TCGTT----------TAT----TTTTG-TTTTTGTATTCCCCCTTTTTGGTTATGGCTTTCTTGTTGATTTTTTTCTGCCTTTTCTTGGCTTTTCTCTT------------------------------ATTTTTGTTGTTGTTATTGTTG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGT-TCCCTTAGGTTTTGTGTCCATGAAGTCGTTTCGCACCTCCACGCAGAG---------------CGTGTCCAAGSizeHit CountTotal NormTotal
No Reads
droAna3
TGGCTGG---TGGCGGGGAAAGTAATACGGAACTGCGGAAAGCAGCCGCGGCACTCACCATCAATCGCCATTCCAACGAATCGGGTACTGGCT--A----------TGACCTATGACC-TATGACCTATGACTAGCACTACTACTTCCGCTA-----CTA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCACTACTAGTCTGCTTCTAT----TTCTGCTTCTTGTAATGCCCGCTT---------------------------------------------------TAAGTGTTGT--AGTCTACTCCTCTTCCCTTTAATTTTGTTACCATT--TTTTGTGTCCACATCCGCTTAATCCTCAAGAGCTTTCAAGAGCTTCT---------------------------------------------------------------------------------------------------------------------------------------------------AA----------------------------------CTGACTC-TGCTCC------CTCTCC-TGCTTTAGGTTTCGTGTCCATGAAGTCATATCGCACCTCCACCCAAAGCGTGTCGAAGCGCTCCTCGGACTACSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCCCGCTT---------------------------------------------------TAAGTGTTGT--AGTCTACTCC.....................................................................................................................................................................................................................................................................................................................................................................2911.001100000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACCCAAAGCGTGTCGAAGCGCTCCTC.......2611.001010000
...........GGCGGGGAAAGTAATACGGAACT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001100000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTCGTGTCCATGAAGTCATATCGCAC.....................................2711.001010000
droBip1
CGCAAGG---CGGCCGCGGCA--------------------------------CTCACCATCAACCGCCATTCGAACGAATCGGGTACT--GGCTA----------TGACCTA-----------T-T-------GTACTACCACTTCCGCTA-----CTA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCACTACTAG----CTTCTACTAGCTCCTGCTTTCTGTAATATCCGC-------------------------------------TTGCTTGGTTTTTCTTTGAGTGTTGTGTAGCC-----TTCGCTTCCTTAGTTTTGTTCCC------------TCAGTGTCTCCTCAACCCACCTCAGCCCA-------CTCTAATT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------GGA---T------------------TCCTTCTCCT-CC-CGGTACAGGTTTCGTGTCCATGAAGTCGTTCCGCACCTCCACCCAGAGCGTGTCCAAGCGCTCCTCGGACTACSizeHit CountTotal NormTotal
No Reads
dp5
TTCCTAA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTCTATTCCC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCTCTTTTT--CGTCCA----------CTCTTC-TGCGGCAGGTTTCGTGTCGATGAAGTCGTTCCGCACATCCACGCAGAGCGTCTCCAAGCGCTCCTCGGACTACSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAGCGTCTCCAAGCGCTCCTCGGAC...2611.0010100000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCTCCAAGCGCTCCTCGGA....2011.0010100000000
droPer2
TTCCTAA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTCTATTCCC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCTCTCTTT--CGTCCA----------CTCTTC-TGCGGCAGGTTTCGTGTCGATGAAGTCGTTCCGCACATCCACGCAGAGCGTCTCCAAGCGCTCCTCGGACTACSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCGTTCCGCACATCCACGCAGA..........................2311.001010000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCCGCACATCCACGCAGAG.........................2111.001010000
droWil2
CGTAAGG---CAGCCGATATT--------------------------------CTAACCAGCAATCGTCATTCAAATGAATCGGGTAC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
No Reads
droVir3
CGC--------------------------------------------------TA-ACCAGCAATCGTCATTCGAATGAATCGGGTATTCCAGGCA----------ATTACTT-----------A-T-------ATATCTAA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
........................................................ACCAGCAATCGTCATTCGAATGAATCGG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.001000000000000000000000000000000000000000000000000001000000000000
.................................................................CGTCATTCGAATGAATCGG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001000000000000000000000000000000000000000000000000000000000000100
droMoj3
CGCAAAG---CGGCGGCTGAG--------------------------------TTAACCAGCAATCGTCATTCAAATGAATCGGGTATTTCTTCTA------------------------------------------------------TA-----CTT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTACT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCTTAGCAACTTCTATCGCT-----------SizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
No Reads
droGri2
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCAGGTTTCGTGTCGATGATGTCATTTCGTACGTCCTCGCATAGCGTTTCCAAGCGATCCTCTGAGCACSizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads

Generated: 05/19/2015 at 12:06 AM