ID:

dsi_13006

 Coordinate:

2l:9942118-9942402 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-30.7 -30.6 -30.5

Flybase annnotation

exon [2l_9942403_9942487_+]; CDS [2l_9942403_9942487_+]; CDS [2l_9942061_9942117_+]; exon [2l_9941984_9942117_+]; intron [2l_9942118_9942402_+]

Repeatable elements

NameClassFamilyStrand
AT_richLow_complexityLow_complexity+
AT_richLow_complexityLow_complexity+

Sense Strand Reads

##################################################---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
ATATGGAAATGCAGAGCAACAAAATGTCAATAACAGAGGAGACACAAGCGGTAATTTATTATAAAATATAAAAGATGACTCTTTTTGCTTTAAACATGAAGTGAATTGTTCTAATGCGCAGTAAGGCTTTGCTTGTATATATGTACACGTATATAAGCTATCCTCTGTATGCGTGTATATAATACATCTGTGATTTTTATCATGCAAAAGCGCCAATTTTCAAACAAGATTTTAAGTTTGACTTATCGGAACTAAATTTTTTGCGAATAAGAATAAAGAGAGGAAATTGTTGTGGGATATCGACAAATATTTATATTTAATATTATATTTTTAAGCAGACGCGCAAAGAATGCGGAAAAAGGGGACGAAAACCAGGAAGAAAGAC
******************************************************************************************************************************.(((((.(((((.((((((((((((((((((.....)).)))))))))))))))))))))...(((((....))))))))))((..((.((..((((((..........))))))...)).))..)).....******************************************************************************************************************************* 		Read size # Mismatch Hit Count Total Norm Total M023
head
 SRR553487
NRT_0-2 hours eggs
 SRR618934
dsim w501 ovaries
 M025
embryo
 SRR553486
Makindu_3 day-old ovaries
 SRR553485
Chicharo_3 day-old ovaries
 GSM343915
embryo
 M024
male body		 M053
female body
 O002
Head
 SRR902008
ovaries
 SRR902009
testis
 SRR553488
RT_0-2 hours eggs
.....................................................................................................................................................................................................................................................................TGTGAATAAGAATAAAGTTAGGAA.................................................................................................... 24 3 1 3.00 3 0 3 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................................................................................................................................................ATTATATTTTTAAGCAGACG............................................ 20 0 1 3.00 3 3 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................CTTTGCTTGTATATATGTACA.............................................................................................................................................................................................................................................. 21 0 1 3.00 3 3 0 0 0 0 0 0 0 0 0 0 0 0
..................ACAAAATGTCAATAACAG............................................................................................................................................................................................................................................................................................................................................................. 18 0 1 1.00 1 0 0 0 0 0 0 0 0 0 1 0 0 0
..............................TAAGAGAGGAGACATAAGAGG.............................................................................................................................................................................................................................................................................................................................................. 21 3 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0
..ATGGAAATGCAGAGCAAC............................................................................................................................................................................................................................................................................................................................................................................. 18 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................................................................ATCGGAACTAAATTTTTTTTTAATA.................................................................................................................... 25 3 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0
..ATGGAAATGCAGAGCAACAAAAT........................................................................................................................................................................................................................................................................................................................................................................ 23 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0 0
.............................................................................................................................................................................................................................................TTGACTTATCGGAACTAAATT............................................................................................................................... 21 0 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0 0 0
....................................................................................................................................................................................................................................................CTCGGAACTAAATTTTT............................................................................................................................ 17 1 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0
........ATGCAGAGCAACAAAATGT...................................................................................................................................................................................................................................................................................................................................................................... 19 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0
.................................................................................................................................................................................................................................................................................TACAGAGAGGAAGTTGTGGTG........................................................................................... 21 3 2 1.00 2 0 0 0 0 0 0 0 0 0 0 0 2 0
.TATGGAGATGCAGAGCAACAAAATGTC..................................................................................................................................................................................................................................................................................................................................................................... 27 1 1 1.00 1 0 0 0 0 0 0 0 0 0 0 1 0 0
.TATGGAAATGCAGAGCAACAAAATGTC..................................................................................................................................................................................................................................................................................................................................................................... 27 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0
........................TGTCAATAACAGAGGAGACA..................................................................................................................................................................................................................................................................................................................................................... 20 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................................................................................TGTGAATAAGAATAAAGTTAGGA..................................................................................................... 23 3 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0
...............................AACAGAGGAGACACAAGCGAC............................................................................................................................................................................................................................................................................................................................................. 21 2 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0
..................ACAAAATGTCAATAACAGAGG.......................................................................................................................................................................................................................................................................................................................................................... 21 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0
....................................AGGAGACACAAGAGGT............................................................................................................................................................................................................................................................................................................................................. 16 1 3 0.67 2 0 0 2 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................................................................................................................ATTGTTGTGGGAGATCGA.................................................................................. 18 1 2 0.50 1 0 0 0 0 0 1 0 0 0 0 0 0 0
...................................................................................................................................................................................................................................................................................................GTGGCATATCGACAAAT............................................................................. 17 1 3 0.33 1 0 0 0 0 0 0 0 0 0 0 0 0 1
...............................................................................................................................................................................................................................................................................................................................................................GCTGAAAAAGGCGACGAAGAC............. 21 3 6 0.17 1 1 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................................................................................................................................................ATAAAGAGAGACAATTGTTGA............................................................................................ 21 3 6 0.17 1 0 0 0 0 0 0 1 0 0 0 0 0 0
..................................................................................................................................................................................................................................................................................................TGTGGCATATCGACAA............................................................................... 16 1 9 0.11 1 0 1 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................................................AAAATTTTAAGTCTGACT.............................................................................................................................................. 18 2 14 0.07 1 0 0 0 1 0 0 0 0 0 0 0 0 0
.....................................GGAGACATAAGAGGTAAGT......................................................................................................................................................................................................................................................................................................................................... 19 3 20 0.05 1 0 0 0 0 0 0 0 1 0 0 0 0 0
....................................................................................................................................................................................................................................................ATCGGAACTAAATTT.............................................................................................................................. 15 0 20 0.05 1 0 0 0 0 0 1 0 0 0 0 0 0 0

Anti-sense strand reads

TATACCTTTACGTCTCGTTGTTTTACAGTTATTGTCTCCTCTGTGTTCGCCATTAAATAATATTTTATATTTTCTACTGAGAAAAACGAAATTTGTACTTCACTTAACAAGATTACGCGTCATTCCGAAACGAACATATATACATGTGCATATATTCGATAGGAGACATACGCACATATATTATGTAGACACTAAAAATAGTACGTTTTCGCGGTTAAAAGTTTGTTCTAAAATTCAAACTGAATAGCCTTGATTTAAAAAACGCTTATTCTTATTTCTCTCCTTTAACAACACCCTATAGCTGTTTATAAATATAAATTATAATATAAAAATTCGTCTGCGCGTTTCTTACGCCTTTTTCCCCTGCTTTTGGTCCTTCTTTCTG
*******************************************************************************************************************************.(((((.(((((.((((((((((((((((((.....)).)))))))))))))))))))))...(((((....))))))))))((..((.((..((((((..........))))))...)).))..)).....****************************************************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total M023
head
 M024
male body		 O002
Head
 SRR553486
Makindu_3 day-old ovaries
 SRR618934
dsim w501 ovaries
 SRR553485
Chicharo_3 day-old ovaries
 SRR553488
RT_0-2 hours eggs
 GSM343915
embryo
 SRR553487
NRT_0-2 hours eggs
.........................................................................................................................................................................................................................................................................................................................................................................CCCTGCTTTTGGTCCTTCTTT... 21 0 1 2.00 2 1 1 0 0 0 0 0 0 0
.........................................................................................................................................................................................................................................................................................................................................................................CCCTGCTTTTGGTCCTTCTT.... 20 0 1 1.00 1 1 0 0 0 0 0 0 0 0
........................................................................................................................................................................................................................................................................................................................................................................CCCCTGCTTTTGGTCCTTCTTT... 22 0 1 1.00 1 1 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................................................................................................................................................................................................CTGCTTTTGGTCCTTCTT.... 18 0 1 1.00 1 0 0 1 0 0 0 0 0 0
......................................................................................................................................................................................................................................................................................................................................................CGTTTCTTACGCTTTTTTCCC...................... 21 1 1 1.00 1 1 0 0 0 0 0 0 0 0
......................................................................................................................GTCATTCCGAAACGAACA......................................................................................................................................................................................................................................................... 18 0 1 1.00 1 1 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................................................................TGGATTTTAAGAACGCTTATTC.................................................................................................................. 22 3 2 0.50 1 0 0 0 0 0 0 1 0 0
........................................................................................................................................................................................................................................................................................................................................AAAATTGGTATGCGCGTTT...................................... 19 2 5 0.40 2 0 0 0 0 0 2 0 0 0
.......................................................................................................................................................................................................................................................................................................................................AAAAATTGGTATGCGCGTTT...................................... 20 2 3 0.33 1 0 0 0 1 0 0 0 0 0
..........................................................................................................................................................................................AGACAGAAGAAATAGTACGTT.................................................................................................................................................................................. 21 3 4 0.25 1 0 0 0 0 1 0 0 0 0
.......................................................................................................................................................................................................................................................................................................................................AAAAATTGGTATGCGCGTTTG..................................... 21 3 4 0.25 1 0 0 0 1 0 0 0 0 0
............ACTAGTTGTTTTACAGTTA.................................................................................................................................................................................................................................................................................................................................................................. 19 2 6 0.17 1 0 0 0 0 0 0 0 1 0
............................................................................................................................................................................................ACAGAAGAAATAGTACGTT.................................................................................................................................................................................. 19 3 20 0.15 3 0 0 0 0 3 0 0 0 0
.............................................................................................................................................................................................................................................................................................................................................TCGTCTGCGCGGCTCTTA.................................. 18 2 8 0.13 1 0 0 0 0 1 0 0 0 0
...........................................................................................................................................................................................................................................................................................................................................................................CTGCTTTTGGTACTT....... 15 1 12 0.08 1 0 0 0 1 0 0 0 0 0
...........................................................................................................................................................................................GACAGAAGAAATAGTACGTT.................................................................................................................................................................................. 20 3 14 0.07 1 0 0 0 0 1 0 0 0 0
...........................................................ATATTTTATATTTTC....................................................................................................................................................................................................................................................................................................................... 15 0 15 0.07 1 0 0 0 0 0 1 0 0 0
........................................................................................................................................................................................................................................................................................................................................AAAATTGGTATGCGCGT........................................ 17 2 18 0.06 1 0 0 0 0 0 1 0 0 0
..........................................................................................................................................................................................................................................................................................................................................AATTGGTATGCGCGTT....................................... 16 2 20 0.05 1 0 0 0 0 0 1 0 0 0
.................................................................................................................................................................................................................................................................................................ATCACCCTTTAGCTGTT............................................................................... 17 2 20 0.05 1 0 0 0 0 0 0 0 0 1

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim2 2l:9942068-9942452 + dsi_13006 ATATGGAAATGCAGAGCAACAAAATGTCAATAACAGAGGAGACACAAGCGGTAATTTATTATAAAATATAAAAGAT---G-ACT------CTTTTTGCTTTAAACATG------------AAG-----TGA-ATTGTTCTAATGCGCAGTAAGGCTTTGCT-T-----------------------GTATATA--TGTACAC--GTATATAAGCTATCC--TCTGTATGCGTGTA-------------------------T----------A--T---AATACATCTGTG------ATTTTTATCATGC-AAAAGCGCCAATT-T----------------TCAAAC-------AAG-----------A----------------------TTTTAAGTTTGAC-----------TTA--------------------------TCGGAA-------------------------------------------------------------------------------------------------------------------CTAAATTTTTTGCGAATAAGAATAAAGAGAGGAAATT------------------GTT-GTGGGATATCGA-----------------C-------------AAATATTTA-------------TATTTAATATTATATT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTAAGCAGACGCGCAAAGAATGCGGAAAAAGGGGACGAAAACCAGGAAGAAAGAC
droSec2 scaffold_3:5689372-5689756 + ATATGGAGATGCAGAGCAACAAAATGTCAATAACGGAGGAGACACAAGCGGTAATTTATTATAAAATATAAAAGAT---GTACT------CTTTATGCTTTAAACATG------------AAG-----TGA-ATTGTTCTAATGCGCAGTAAGGCTTTGCT-T-----------------------GTATATA--TGTACAC--GTATATATGCTATTC--TCTGTATGCGTGTA-------------------------T----------A--T---AATACATCTGTG------ATATTTATCATGC-AAAAGCGCCAATT-T----------------TCAAAC-------AAG-----------A----------------------TTTTAAGTTTGAC-----------TTA--------------------------TCGGAA-------------------------------------------------------------------------------------------------------------------CTGCATTTTT-CCGAATAAGAATAAGGACAGGAAATT------------------GGT-TTGGAATATCGT-----------------C-------------AAATATTTA-------------TATTTTATATTATATT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TATAAGCCGACGCGCAAAGAATGCGGAAAAAGGGGACGAAAACCAGGAAGAAAGAC
dm3 chr2L:10264215-10264598 + ATATGGAGATACAGAGCAACAAAATGTCAATAACGGAGGAAACACAAGTGGTAATATATTATTAAATATAAAAGAT---GTGGT------CTTTTTG-TTTGAACATG------------ATC-----TGA-ATTGTTCTAATGCGCAGTAAGGCCTTGCG-T-----------------------GTATGTA--TATACAC--ATATATAAGCTATCTTCTGTGTATGCGTGTA-------------------------T----------A--T------ACATATGTG------ATTTTTATCATGC-AAAAGCGCCTATT-T----------------TCAAAA-------AAG-----------A----------------------TTTTAAGTTTGAC-----------TTA--------------------------TCGGAA-------------------------------------------------------------------------------------------------------------------CTAAATTTTT-GCGAATAAGAATATTGAAAGCAAATT------------------GTTTTTGGGATATCGT-----------------C-------------AAATATTTA-------------CATTTTATATTATATT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TATAAGCAGACGCGCAAGGAATGTGGAAAAAGGGGACGAAAACCAGGAAGAAAGAC
droEre2 scaffold_4929:10870524-10870892 + ATATGGAGATACAAAGTAATAAAATGTCGATAACGGAGGAGACACAAGTGGTAACTTATCATTAAATATACAAGTT---GCATT------CTTTTTGTCTTGAACATG------------AAG-----TGC-ATTGTTTTAATGCGCAGTAAAGCAATGTT-T-----------------------GTACATA--CATATGT--A--TATACATC------TATATATGTATGT-------------------------ATATATA----T--TCATAAATAT--AAATG---------GTTATTATGT-TAAAGCGCTAATT-T----------------TCAAAA-------TCG-----------A----------------------TTTTAAGTTCGAC-----------TTA--------------------------TCGGAT-------------------------------------------------------------------------------------------------------------------CCGCATTTTT-TCGAATAAGAATATTGAAATGAAATT------------------GT---------------------------------------------AATAAGTTA-------------TATTTCGTATTACATT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TATAAACAGACGCGCAAAGAGTGCGGGAAGAGAGGACGAAAGCCAGGAAGAAAGAC
droYak3 2L:12938483-12938841 + ATATGGACATACAAAGTAATAAAATGTCGATAACGGAGGAGACGCAAGTGGTAATATATTATAAAATATAAAAGTA---GCATG------CTTTTCGCTTTGAACATG------------AAG-----TGC-ACTGTGTTAATGCGCAGTAAGAATATGTT-T-----------------------GTACATAAATGTACAT--G------CATA------TATGCA----------------------T--GTG-T--ATATGTA----T--TCATGAATACATATATGCAAATGTTTGTTTTCATGT-AAAAGCGCTAATT-T----------------TTAAAG-------TCG-----------A----------------------TTTTGAATTCGAC-----------TT---------------------------------------------------------------------------------------------------------------------------------------------------------------TCGAATAAGAATATTGAAAGGAAGTT------------------GT-------------------------------A-------------AGTTAATTC-------------CAT-TTATATTAAATT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TATATACAGACGCGCAAAGAATGCGGAAAAAGAGGACGAAAACCAGGAAGAAAGAC
droEug1 scf7180000409554:4658044-4658479 - AAATGGAAGTTCAAAGCAACAAAATGTCGATCATAGAGGAAACACAAACGGTAAAAAGATAATA-----TATA---TCTGTATTCAT------CTTGTGTTATTTATT------------ATTTT-GTTAT-TTTGCTTAAATGCGCAGTTGATATGTACA-TATACCTACGTATGTATGCAAATGTAATATA--TG--------------T--------------------------ATTTAT--GTAT--GAA-TGTTTA------------T------GTTTATATG------G----TTCCCTGCTATGAGCGCTACCT-T----------------TCAAAA-------CAG-----------ATGTTTAAAGATTGAAGAGAAATATTTTCA-TTGACAATTAATTTACTTGCTAGCCTAGAGTGTTCTA------------------------------------------------------------------------------------------------------------------------------------------------------------------AGCT------------------GT-------------------------------A-------------AA-----TTAAAACTTAAAATAAATATA--------------------------------------------------------------------TTGTAATTCTACAATATACATATTTAAATTTTA-------------------------------------------------------------------------------TTCTAATCAAGTGTCATTGTGTTCCAGCAGACTCGGAAAGAATGTGGAAAAAGGGGTCGAAAACCAGGGAGAAAGAC
droBia1 scf7180000301468:392749-393111 + AAATGGAAATGCAAAGTAATAAAATGTCTATCACGGAGGAAGCGCAAGCGGTAATAAGATATTT-----AATG---GTTATATTTAT------GATGTGC-GAGGAGG------------AAAGTCTTTAC--TTCTGTTAATGCGCAGTTAGGCTAAGG--------------------------GTAAATA--AGTATGT----------------------------------------AT--GTATAAGGTCTGTTTG------TAA--------------------------------ACACGAAAAGAGCGCTACTT-C----------------TAA----------CAG-----------A----------------------TTTTAAAATT------------------------------------------------ATTCCTATT------------------------------------------------------------------------------------------------------------------T---TCCTATAAA-ATGTTGGACA----T-TTATATTCTTAGTTCCCA---------------------------------------CAGAATT--TATTTAAA-------------TATACAATTTTATGTT----------------------------------------------------------------------------------------TAT-------------------------------------------------------------------------------AAGTAATAAACTATGAATGTGTTTCAGCAGACACGGAAAGAGTGTGGCAAAAGAGGGAGGAAACCAGGAAGAAAGAC
droTak1 scf7180000415438:468387-468847 + AAATGGAAATGCAAAGTAATAAAATGTCGATCGCGGAGGAAACACAAGCGGTAAGAAAATAAAATATTTAAAGACA---GTATTCAT-----TTTTACGTCGGATATG------------AATTCATACAC-TTTGTTCTAATGCGCAGTTAGACCATGGGAT-----------------------ATATGTA--TATTTGC--AAATATGT--------------------------ACATAT--GTAT--GAG-CGTCTG------TAA--------------------------------ACGTTTATAGGGCGCTAATT-T----------------TTAAAT-------A----------------------------------------------------------------------------------------------ATTCTTATT------------------------------------------------------------------------------------------------------------------T---GCCAAGAAATATATTAAAAAAATATT--------------------T-GT----------CTGGTTAACTACGCA--------------------------------------------------------------------------GTTAAAATTTTA----------------------------------CCACAGTTTACATTCGGAAATAATATTATTTTACCACTGATCCCAGAAAATAAAATTATTTCATTATATCCGATATTTCTACCGATTTATAGTATATTTCTTAAACATAATAAAATGACAATGTCTTTCAGCAGACACGCAAAGAATGTGGAAAAAGAGGACGGAAACCAGGAAGGAAGAC
droEle1 scf7180000491186:3344756-3345007 + AAATGGAAATCCAAAGTAATAAAATGACGATCACAGAGGAAGCAATAACGGTAATCAAATAATT-----AATG---GCTATATTTAT------ATTGTGTTGAAAGTG------------AATTTATTTACCTTTTTTCTAATGCGCAGTTAGGTTGTGGA-A-----------------------ATACACA--CACA-----------------TTA--TTTGCACGCATACATACAAATAT--GTAA--GGG-TGATTG--------------------------------------TACGCATAAAAAGAGCGCTTTTT-T----------------TCAAAA-------TAA-----------T----------------------AATTAAA-TTGAC-----------AAA--------------------------CGAAAT-------------------------------------------------------------------------------------------------------------------CTCAATTTAT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T
droRho1 scf7180000762898:49427-49652 + AAATGGAAATCCAAAGTAATAAAATGACGATAACAGAGGAAACGATAACGGTAATATAATAATT-----AATG---ACTTTATTTA-GTGCTTTTAGG--TAAACTTG------------------AGAAC-TTTGTCTTAATGCGTAGTAAGGCTATGCA-T-----------------------TCATGTA--AATATAT--GAATGTACATATACA------TA----------------------T--GTG-TGTTTG------TATATGT----------------------------ACATGTCAAGAGCGCTTTAA-T----------------TCAAAA-------TTC-----------T----------------------TTTTAAATCTGAC-----------TT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droFic1 scf7180000453838:494370-494743 + AAATGGAAACACAAAGTAATAAAATGTCAATTACAGAGGAATCACTAACCGTAAGTAGATATTC-----AATT---TTT---CTTGC------ATTGTTTCGAATGCG------------AAATTGTTT----GTGACTTAATGCGCAGTTAGTCTTTTCG-A-TACT---GTCTT--T-------GTTTATA--TGTATGT--A----------------------------------AGTATGTGTAT--GAACACTTTG----TGTATA--T---A---------------------------AAC-AAAGGCGCCAATT-T----------------TCAAAA-------CAT-----------T----------------------GAT----------AACTA-------------------GAATTCAAAGCACATACATATATAGAAATTTCCAAGTTCAAATAAGAATATGC-----------------------------------------------------------------------------------------------------------------------------------------------------------CCCATTAGTTACATGTG-ATACTTAGTAAC--AAAATATG-------------ATTTTA--------------------------------------------------------------------ATAAT---------------------------------------------------------------------------------------------------------------------------------ATTTTTAGACTCGTAAGGAGTGTGGAAAAAGGGGTCGAAAACCAGGAAGGAAGAC
droKik1 scf7180000302472:3073113-3073443 - AAATGGAATGCCAAAGTATTAAAATGTCTATCAGCGAGGAAGCACAAACGGTAGTAAGATATTT-----TAAA---TCCATCCCAA-GTTTT--------CCAA-T--------------------TGTAG-TTTGTTTTAATGCGCAGTAAAGTT------C-----------------------GTACATA--AGTATGTATG------T--------------------------ATGTAT--GTGT--GAG-C--ATGTGTGTGAAA--------------------------------ACAAACAAAAGGCG---ATT-C----------------TGAAGA-------TAC-----------A----------------------AATTATGTTAGCA-----------TTA--------------------------TTAGAA-----------------------------------------------------------------------------------------------------------------------------------------AATT-----------------------------GT-------------------------------AA----TAAAAATAAAATATTTG-------------TATT----------------------------------------ATTTATATTGTATTTTTTTTAACATTTTTCATTTG---------------------------------------------------------------------------------------------------------------------------------ACCTGTAGACCCGTAAGGAATGTGGAAAGAGAGGACGGAAACCTGGAAGAAAGAC
droAna3 scaffold_12916:14096263-14096339 + TAT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATTT-TTCAATAAATTTTTA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTATTAGACACGCAAAGAATGTGGAAAGCGAGGTCGAAAGCCTGGCAGAAAGAC
droBip1 scf7180000396572:2860949-2861284 - AAATGGAGTGTCAAAGCAGCAAAATGTCGGTCACAGAGGAAACATCCACGGTAATGCACTATTTGATGTTGAATAA---GTATC------CATTTAACTATGGATTAGTTCATACGCATGTGTTTATTTAC-CTTGATTTAATGCGCAGTTAGTTTC-------------------------------------------------------------C------TT----------------------T--GT------------------------------------------------------------GTGTTAC----------------------------------------------------------------------TTGAA------------------------------------------------GAAAAAAAGAAACTTTTAATTTAAAATATAAACATGCAAACAGCCTGGTTTTAGTAA---TCAATAAACTTATTATTAAAATATAAGAGA-------ATTGCTATATTTTTTTAATAAATTCTTA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTTATTAGACCCGCAAAGAATGTGGAAAACGAGGTCGAAAGCCTGGAAGAAAGAC
dp5 4_group1:3710601-3710748 - TTTGGGTAGAGGAATAGAGAAAAATG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGTGTGT--A--T---AAT-----------------------------------------------------------------------------T----------------------------------------------------------------------------------------------------------------------------ATAGAGAGGTTT-TTTAAGAATC--------------------GTATGGGATATATAA-----TACAATT-TTCTA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAACG---------------------------------------------------------------------------------------------------------------------------------ATTTACAGGTCCGCAAAGAATGTGGAAAGAGAGGACGGAAGCCCGGAAGAAAAAC
droPer2 scaffold_1:944926-945074 - TTTGGGTAGAGGAATAGAGAAAAATG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGTGTGT--A--T---AAT-----------------------------------------------------------------------------T----------------------------------------------------------------------------------------------------------------------------ATAGACAGGTTTTTTTAAGAATC--------------------GTATGGGATATATAA-----TACAATT-TTCTA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAACG---------------------------------------------------------------------------------------------------------------------------------ATTTACAGGTCCGCAAAGAATGTGGAAAGAGAGGACGGAAGCCCGGAAGAAAAAC
droWil2 scf2_1100000004968:444161-444223 + TTGTT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TATTAACAGACTCGCAAGGAATGCGGCAAAAGGGGGCGAAAACCAGGAAGAAAGAC
droVir3 scaffold_12963:14203905-14204009 + AGCGA-AAATA-------------T-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTGT--G------T------------------------------------CA--AAA-TG--ACTGT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTA-------------TATA----------------------------------------ATTTAATTATTATT------------------------------------------------------------------------------------------------------------------------------------------------------TATTTTAGGAACGCAAGGAGTGTGGACGCAGGGGACGAAAGCCTGGCCGAAAAAC
droMoj3 scaffold_6500:29986334-29986595 + TATATATATAT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATAT--A------T------------------------------------AT--ATA-TA--TATATATATATA--T---A---------------------------GACCATATACG---ACTACCG-AAGGCACTTGCTGCCAGTGCTTAGCCTTAATTTAGAGTTGA----------------------TTTTA------------------------------------------------TATTAATTGTAACT------------------------------------------------------------------------------------------------------------------T---CTTAATAATAATAATAATA------------------------------------------------------------------ATAAT--AATATATA-------------TATATAATAATATATATATATTCGTGCAATAAAGGTTTTAAACTTTTAAAACATTATA------------------------------------------------------------------------------------------------------------------------------------------------------TATTTCAGGAACGCAAGGAATGCGGACGAAGAGGACGTAAGCCGGGCAGAAAATC
droGri2 scaffold_15126:7632172-7632321 - ATTTACAAATATG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CA----------------------T--GTG-A--A-G----TATTTA--T---T---------------------------AAC-TAAG---TT-ACTAGCAAAATGAATTTGTTGTCAGC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GAAT-------------------------------------------TTCATAATAATAATAAATTTA--------------------------------------------------------------------TTATT---------------------------------------------------------------------------------------------------------------------------------ATTTTAAGGAACGCAAAGAATGTGGACGAAGGGGTCGAAAACCTGGCAGAAAGAC

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
ATATGGAAATGCAGAGCAACAAAATGTCAATAACAGAGGAGACACAAGCGGTAATTTATTATAAAATATAAAAGAT---G-ACT------CTTTTTGCTTTAAACATG------------AAG-----TGA-ATTGTTCTAATGCGCAGTAAGGCTTTGCT-T-----------------------GTATATA--TGTACAC--GTATATAAGCTATCC--TCTGTATGCGTGTA-------------------------T----------A--T---AATACATCTGTG------ATTTTTATCATGC-AAAAGCGCCAATT-T----------------TCAAAC-------AAG-----------A----------------------TTTTAAGTTTGAC-----------TTA--------------------------TCGGAA-------------------------------------------------------------------------------------------------------------------CTAAATTTTTTGCGAATAAGAATAAAGAGAGGAAATT------------------GTT-GTGGGATATCGA-----------------C-------------AAATATTTA-------------TATTTAATATTATATT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTAAGCAGACGCGCAAAGAATGCGGAAAAAGGGGACGAAAACCAGGAAGAAAGACSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTATATT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTAAGCAGACG............................................2013.00330000000000000000
..........................................................................................................................................................CTTTGCT-T-----------------------GTATATA--TGTACA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2113.00330000000000000000
..................ACAAAATGTCAATAACAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.00100000100000000000
..ATGGAAATGCAGAGCAAC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.00100100000000000000
..ATGGAAATGCAGAGCAACAAAAT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.00101000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................TTGAC-----------TTA--------------------------TCGGAA-------------------------------------------------------------------------------------------------------------------CTAAATT............................................................................................................................................................................................................................................................................................................................................................................................2111.00100010000000000000
........ATGCAGAGCAACAAAATGT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00100000000000100000
.TATGGAAATGCAGAGCAACAAAATGTC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.00100000000001000000
........................TGTCAATAACAGAGGAGACA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00110000000000000000
...............................AACAGAGGAGACACAAGCGAC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100100000000000000
..................ACAAAATGTCAATAACAGAGG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100000010000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................A--------------------------TCGGAA-------------------------------------------------------------------------------------------------------------------CTAAATTT...........................................................................................................................................................................................................................................................................................................................................................................................15200.05100000010000000000
droSec2
ATATGGAGATGCAGAGCAACAAAATGTCAATAACGGAGGAGACACAAGCGGTAATTTATTATAAAATATAAAAGAT---GTACT------CTTTATGCTTTAAACATG------------AAG-----TGA-ATTGTTCTAATGCGCAGTAAGGCTTTGCT-T-----------------------GTATATA--TGTACAC--GTATATATGCTATTC--TCTGTATGCGTGTA-------------------------T----------A--T---AATACATCTGTG------ATATTTATCATGC-AAAAGCGCCAATT-T----------------TCAAAC-------AAG-----------A----------------------TTTTAAGTTTGAC-----------TTA--------------------------TCGGAA-------------------------------------------------------------------------------------------------------------------CTGCATTTTT-CCGAATAAGAATAAGGACAGGAAATT------------------GGT-TTGGAATATCGT-----------------C-------------AAATATTTA-------------TATTTTATATTATATT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TATAAGCCGACGCGCAAAGAATGCGGAAAAAGGGGACGAAAACCAGGAAGAAAGACSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
......AGATGCAGAGCAACAAAATG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010001
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACAGGAAATT------------------GGT-TTGGAAT.................................................................................................................................................................................................................................................................................................................................2111.0010001
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T-TTGGAATATCGT-----------------C-------------AAATATT......................................................................................................................................................................................................................................................................................2111.0010001
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAAGAATGCGGAAAAAG........................1811.0010010
.....................AAATGTCAATAACGGAGGAGA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010001
...........................................................................................................................................TAATGCGCAGTAAGGCTTTGC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010100
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGGAATATCGT-----------------C-------------AAATATT......................................................................................................................................................................................................................................................................................2011.0010100
...............................................................................................................................................................................................................................TGTATGCGTGTA-------------------------T----------A--T---AATACA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010001
..........GCAGAGCAACAAAATGTCAAT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010100
............................................................................................................................................AATGCGCAGTAAGGCTTTG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0011000
dm3
ATATGGAGATACAGAGCAACAAAATGTCAATAACGGAGGAAACACAAGTGGTAATATATTATTAAATATAAAAGAT---GTGGT------CTTTTTG-TTTGAACATG------------ATC-----TGA-ATTGTTCTAATGCGCAGTAAGGCCTTGCG-T-----------------------GTATGTA--TATACAC--ATATATAAGCTATCTTCTGTGTATGCGTGTA-------------------------T----------A--T------ACATATGTG------ATTTTTATCATGC-AAAAGCGCCTATT-T----------------TCAAAA-------AAG-----------A----------------------TTTTAAGTTTGAC-----------TTA--------------------------TCGGAA-------------------------------------------------------------------------------------------------------------------CTAAATTTTT-GCGAATAAGAATATTGAAAGCAAATT------------------GTTTTTGGGATATCGT-----------------C-------------AAATATTTA-------------CATTTTATATTATATT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TATAAGCAGACGCGCAAGGAATGTGGAAAAAGGGGACGAAAACCAGGAAGAAAGACSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
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...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGTGGAAAAAGGGGACG..................1921.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..ATGGAGATACAGAGCAAC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACGCGCAAGGAATGTGGAAAAAGG.......................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGGAATGTGGAAAAAGGGGACG..................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAAAGGGGACGAAAACCAG..........2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................ATCTTCTGTGTATGCGTGTA-------------------------T----------A--T------...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................ATGTCAATAACGGAGGAAAC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAGGGGACGAAAACCAGGAAGAAAG..2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGACGCGCAAGGAATGTGGAAAAAGG.......................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........TACAGAGCAACAAAATGTCAATAACG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGAAAAAGGGGACGAAAACC............2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGGAATGTGGAAAAAGGGGAC...................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACGAAAACCAGGAAGAAAG..2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000
................................................................................................................................................................................................................................................................................................................................................................................A----------------------TTTTAAGTTTGAC-----------TTA--------------------------TCGG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TT------------------GTTTTTGGGATATCGT-----------------C-------------AAATATT......................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000
ATATGGAGATACAGAGCAACAAAA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGACGCGCAAGGAATGTGGAA............................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................CAAAATGTCAATAACGGAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................ACAAAATGTCAATAACGGAGGAAAC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.TATGGAGATACAGAGCAACAAAA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000
........ATACAGAGCAACAAAATGTC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATTTTT-GCGAATAAGAATATTG........................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......AGATACAGAGCAACAAAATGTC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000
................................................................................................................................TGA-ATTGTTCTAATGCGCAGT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
....................................................................................................................................................................................................................................................................................................................................................................G-----------A----------------------TTTTAAGTTTGAC-----------TTA--------------------------TCGGAA-------------------------------------------------------------------------------------------------------------------...................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGTGGAAAAAGGGGACGAAAACCA...........2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACGCGCAAGGAATGTGGAAA...........................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..ATGGAGATACAGAGCAACAAAA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000
...TGGAGATACAGAGCAACAAAATGT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTA-------------CATTTTATATTATATT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TA......................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................ATAAAAGAT---GTGGT------CTTTT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TATAAGCAGACGCGCAAGG.....................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACGCGCAAGGAATGTGGAAAAAG........................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................CAACAAAATGTCAATAACGGA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droEre2
ATATGGAGATACAAAGTAATAAAATGTCGATAACGGAGGAGACACAAGTGGTAACTTATCATTAAATATACAAGTT---GCATT------CTTTTTGTCTTGAACATG------------AAG-----TGC-ATTGTTTTAATGCGCAGTAAAGCAATGTT-T-----------------------GTACATA--CATATGT--A--TATACATC------TATATATGTATGT-------------------------ATATATA----T--TCATAAATAT--AAATG---------GTTATTATGT-TAAAGCGCTAATT-T----------------TCAAAA-------TCG-----------A----------------------TTTTAAGTTCGAC-----------TTA--------------------------TCGGAT-------------------------------------------------------------------------------------------------------------------CCGCATTTTT-TCGAATAAGAATATTGAAATGAAATT------------------GT---------------------------------------------AATAAGTTA-------------TATTTCGTATTACATT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TATAAACAGACGCGCAAAGAGTGCGGGAAGAGAGGACGAAAGCCAGGAAGAAAGACSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
......................AATGTCGATAACGGAGGAGACACAAGTG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.0010100000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGAGTGCGGGAAGAGAGGAC...................2111.0010000100
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAAGAGTGCGGGAAGAGA.......................1911.0010000100
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAGACGCGCAAAGAGTGCG...............................2111.0010000010
......................AATGTCGATAACGGAGGAGAC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000100
..........................TCGATAACGGAGGAGACACA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000100
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAGGACGAAAGCCAGGA........1811.0011000000
.........................GTCGATAACGGAGGAGACA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000100
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGAGAGGACGAAAGCCAGGA........2111.0010000100
droYak3
ATATGGACATACAAAGTAATAAAATGTCGATAACGGAGGAGACGCAAGTGGTAATATATTATAAAATATAAAAGTA---GCATG------CTTTTCGCTTTGAACATG------------AAG-----TGC-ACTGTGTTAATGCGCAGTAAGAATATGTT-T-----------------------GTACATAAATGTACAT--G------CATA------TATGCA----------------------T--GTG-T--ATATGTA----T--TCATGAATACATATATGCAAATGTTTGTTTTCATGT-AAAAGCGCTAATT-T----------------TTAAAG-------TCG-----------A----------------------TTTTGAATTCGAC-----------TT---------------------------------------------------------------------------------------------------------------------------------------------------------------TCGAATAAGAATATTGAAAGGAAGTT------------------GT-------------------------------A-------------AGTTAATTC-------------CAT-TTATATTAAATT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TATATACAGACGCGCAAAGAATGCGGAAAAAGAGGACGAAAACCAGGAAGAAAGACSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACGAAAACCAGGAAGAAAGAC2111.00100000010000
............................GATAACGGAGGAGACGCAAGT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100000010000
..ATGGACATACAAAGTAAT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.00101000000000
...............GTAATAAAATGTCGATAACGGA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.00100000010000
....................................................................................................TGAACATG------------AAG-----TGC-ACTGTGT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100000010000
droEug1
AAATGGAAGTTCAAAGCAACAAAATGTCGATCATAGAGGAAACACAAACGGTAAAAAGATAATA-----TATA---TCTGTATTCAT------CTTGTGTTATTTATT------------ATTTT-GTTAT-TTTGCTTAAATGCGCAGTTGATATGTACA-TATACCTACGTATGTATGCAAATGTAATATA--TG--------------T--------------------------ATTTAT--GTAT--GAA-TGTTTA------------T------GTTTATATG------G----TTCCCTGCTATGAGCGCTACCT-T----------------TCAAAA-------CAG-----------ATGTTTAAAGATTGAAGAGAAATATTTTCA-TTGACAATTAATTTACTTGCTAGCCTAGAGTGTTCTA------------------------------------------------------------------------------------------------------------------------------------------------------------------AGCT------------------GT-------------------------------A-------------AA-----TTAAAACTTAAAATAAATATA--------------------------------------------------------------------TTGTAATTCTACAATATACATATTTAAATTTTA-------------------------------------------------------------------------------TTCTAATCAAGTGTCATTGTGTTCCAGCAGACTCGGAAAGAATGTGGAAAAAGGGGTCGAAAACCAGGGAGAAAGACSizeHit CountTotal NormTotal
No Reads
droBia1
AAATGGAAATGCAAAGTAATAAAATGTCTATCACGGAGGAAGCGCAAGCGGTAATAAGATATTT-----AATG---GTTATATTTAT------GATGTGC-GAGGAGG------------AAAGTCTTTAC--TTCTGTTAATGCGCAGTTAGGCTAAGG--------------------------GTAAATA--AGTATGT----------------------------------------AT--GTATAAGGTCTGTTTG------TAA--------------------------------ACACGAAAAGAGCGCTACTT-C----------------TAA----------CAG-----------A----------------------TTTTAAAATT------------------------------------------------ATTCCTATT------------------------------------------------------------------------------------------------------------------T---TCCTATAAA-ATGTTGGACA----T-TTATATTCTTAGTTCCCA---------------------------------------CAGAATT--TATTTAAA-------------TATACAATTTTATGTT----------------------------------------------------------------------------------------TAT-------------------------------------------------------------------------------AAGTAATAAACTATGAATGTGTTTCAGCAGACACGGAAAGAGTGTGGCAAAAGAGGGAGGAAACCAGGAAGAAAGACSizeHit CountTotal NormTotal
No Reads
droTak1
AAATGGAAATGCAAAGTAATAAAATGTCGATCGCGGAGGAAACACAAGCGGTAAGAAAATAAAATATTTAAAGACA---GTATTCAT-----TTTTACGTCGGATATG------------AATTCATACAC-TTTGTTCTAATGCGCAGTTAGACCATGGGAT-----------------------ATATGTA--TATTTGC--AAATATGT--------------------------ACATAT--GTAT--GAG-CGTCTG------TAA--------------------------------ACGTTTATAGGGCGCTAATT-T----------------TTAAAT-------A----------------------------------------------------------------------------------------------ATTCTTATT------------------------------------------------------------------------------------------------------------------T---GCCAAGAAATATATTAAAAAAATATT--------------------T-GT----------CTGGTTAACTACGCA--------------------------------------------------------------------------GTTAAAATTTTA----------------------------------CCACAGTTTACATTCGGAAATAATATTATTTTACCACTGATCCCAGAAAATAAAATTATTTCATTATATCCGATATTTCTACCGATTTATAGTATATTTCTTAAACATAATAAAATGACAATGTCTTTCAGCAGACACGCAAAGAATGTGGAAAAAGAGGACGGAAACCAGGAAGGAAGACSizeHit CountTotal NormTotal
No Reads
droEle1
AAATGGAAATCCAAAGTAATAAAATGACGATCACAGAGGAAGCAATAACGGTAATCAAATAATT-----AATG---GCTATATTTAT------ATTGTGTTGAAAGTG------------AATTTATTTACCTTTTTTCTAATGCGCAGTTAGGTTGTGGA-A-----------------------ATACACA--CACA-----------------TTA--TTTGCACGCATACATACAAATAT--GTAA--GGG-TGATTG--------------------------------------TACGCATAAAAAGAGCGCTTTTT-T----------------TCAAAA-------TAA-----------T----------------------AATTAAA-TTGAC-----------AAA--------------------------CGAAAT-------------------------------------------------------------------------------------------------------------------CTCAATTTAT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TSizeHit CountTotal NormTotal
No Reads
droRho1
AAATGGAAATCCAAAGTAATAAAATGACGATAACAGAGGAAACGATAACGGTAATATAATAATT-----AATG---ACTTTATTTA-GTGCTTTTAGG--TAAACTTG------------------AGAAC-TTTGTCTTAATGCGTAGTAAGGCTATGCA-T-----------------------TCATGTA--AATATAT--GAATGTACATATACA------TA----------------------T--GTG-TGTTTG------TATATGT----------------------------ACATGTCAAGAGCGCTTTAA-T----------------TCAAAA-------TTC-----------T----------------------TTTTAAATCTGAC-----------TT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droFic1
AAATGGAAACACAAAGTAATAAAATGTCAATTACAGAGGAATCACTAACCGTAAGTAGATATTC-----AATT---TTT---CTTGC------ATTGTTTCGAATGCG------------AAATTGTTT----GTGACTTAATGCGCAGTTAGTCTTTTCG-A-TACT---GTCTT--T-------GTTTATA--TGTATGT--A----------------------------------AGTATGTGTAT--GAACACTTTG----TGTATA--T---A---------------------------AAC-AAAGGCGCCAATT-T----------------TCAAAA-------CAT-----------T----------------------GAT----------AACTA-------------------GAATTCAAAGCACATACATATATAGAAATTTCCAAGTTCAAATAAGAATATGC-----------------------------------------------------------------------------------------------------------------------------------------------------------CCCATTAGTTACATGTG-ATACTTAGTAAC--AAAATATG-------------ATTTTA--------------------------------------------------------------------ATAAT---------------------------------------------------------------------------------------------------------------------------------ATTTTTAGACTCGTAAGGAGTGTGGAAAAAGGGGTCGAAAACCAGGAAGGAAGACSizeHit CountTotal NormTotal
No Reads
droKik1
AAATGGAATGCCAAAGTATTAAAATGTCTATCAGCGAGGAAGCACAAACGGTAGTAAGATATTT-----TAAA---TCCATCCCAA-GTTTT--------CCAA-T--------------------TGTAG-TTTGTTTTAATGCGCAGTAAAGTT------C-----------------------GTACATA--AGTATGTATG------T--------------------------ATGTAT--GTGT--GAG-C--ATGTGTGTGAAA--------------------------------ACAAACAAAAGGCG---ATT-C----------------TGAAGA-------TAC-----------A----------------------AATTATGTTAGCA-----------TTA--------------------------TTAGAA-----------------------------------------------------------------------------------------------------------------------------------------AATT-----------------------------GT-------------------------------AA----TAAAAATAAAATATTTG-------------TATT----------------------------------------ATTTATATTGTATTTTTTTTAACATTTTTCATTTG---------------------------------------------------------------------------------------------------------------------------------ACCTGTAGACCCGTAAGGAATGTGGAAAGAGAGGACGGAAACCTGGAAGAAAGACSizeHit CountTotal NormTotal
No Reads
droAna3
TAT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATTT-TTCAATAAATTTTTA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTATTAGACACGCAAAGAATGTGGAAAGCGAGGTCGAAAGCCTGGCAGAAAGACSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCGAAAGCCTGGCAGAAAGAC2211.001010000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGTGGAAAGCGAGGTCGAAAGCCT...........2511.001000010
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATGTGGAAAGCGAGGTC...................1911.001000010
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAGCCTGGCAGAAAGAC1911.001010000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAGCGAGGTCGAAAGCCTG..........2111.001000010
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATTAGACACGCAAAGAATGT................................2111.001000010
droBip1
AAATGGAGTGTCAAAGCAGCAAAATGTCGGTCACAGAGGAAACATCCACGGTAATGCACTATTTGATGTTGAATAA---GTATC------CATTTAACTATGGATTAGTTCATACGCATGTGTTTATTTAC-CTTGATTTAATGCGCAGTTAGTTTC-------------------------------------------------------------C------TT----------------------T--GT------------------------------------------------------------GTGTTAC----------------------------------------------------------------------TTGAA------------------------------------------------GAAAAAAAGAAACTTTTAATTTAAAATATAAACATGCAAACAGCCTGGTTTTAGTAA---TCAATAAACTTATTATTAAAATATAAGAGA-------ATTGCTATATTTTTTTAATAAATTCTTA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTTATTAGACCCGCAAAGAATGTGGAAAACGAGGTCGAAAGCCTGGAAGAAAGACSizeHit CountTotal NormTotal
No Reads
dp5
TTTGGGTAGAGGAATAGAGAAAAATG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGTGTGT--A--T---AAT-----------------------------------------------------------------------------T----------------------------------------------------------------------------------------------------------------------------ATAGAGAGGTTT-TTTAAGAATC--------------------GTATGGGATATATAA-----TACAATT-TTCTA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAACG---------------------------------------------------------------------------------------------------------------------------------ATTTACAGGTCCGCAAAGAATGTGGAAAGAGAGGACGGAAGCCCGGAAGAAAAACSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAATGTGGAAAGAGAGGACGTC................2313.0030000000030
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATGTGGAAAGAGAGGACGG.................2112.0020000000020
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGCAAAGAATGTGGAAAGAGAGGA....................2412.0020100001000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAGAGAGGACGGAAGCCC...........2011.0010000000010
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGAGAGGACGGAAGCCCGG.........2011.0010100000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGAATGTGGAAAGAGAGGACGGAAG..............2611.0010000000001
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAAGAATGTGGAAAGAGAGGACGG.................2611.0010000000010
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAAAGAGAGGACGGAAGCCC...........2111.0010100000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTGGAAAGAGAGGACGGAAGCCCG..........2511.0010000000010
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGAGAGGACGGAAGCCCGG.........2111.0010100000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAGAGAGGACGGAAGCCCG..........2111.0010100000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGAGGACGGAAGCCCGGAA.......2011.0010100000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTGGAAAGAGAGGACGGAAGCCCGG.........2611.0010100000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGAGGACGGAAGCCCGG.........1811.0010100000000
droPer2
TTTGGGTAGAGGAATAGAGAAAAATG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGTGTGT--A--T---AAT-----------------------------------------------------------------------------T----------------------------------------------------------------------------------------------------------------------------ATAGACAGGTTTTTTTAAGAATC--------------------GTATGGGATATATAA-----TACAATT-TTCTA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAACG---------------------------------------------------------------------------------------------------------------------------------ATTTACAGGTCCGCAAAGAATGTGGAAAGAGAGGACGGAAGCCCGGAAGAAAAACSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGGACGGAAGCCCGGAAGAA....2111.001100000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAATGTGGAAAGAGAGGACG..................2111.001000001
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGGACGGAAGCCCGGAAGAAA...2211.001000001
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAGGACGGAAGCCCGGAAG......2011.001000010
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACGGAAGCCCGGAAGAAAAA.2111.001000001
............AATAGAGAAAAATG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGTGTGT--.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000001
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAAGAATGTGGAAAGAGAGG.....................2111.001000001
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGAATGTGGAAAGAGAGG.....................1911.001000001
droWil2
TTGTT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TATTAACAGACTCGCAAGGAATGCGGCAAAAGGGGGCGAAAACCAGGAAGAAAGACSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTAACAGACTCGCAAGGA....................................1911.00100010
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCAAAAGGGGGCGAAAACCAGGA........2411.00100010
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGGAATGCGGCAAAAGGGGGC...................2211.00100100
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAGGGGGCGAAAACCAGGA........2111.00100100
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGGCAAAAGGGGGCGAAA...............1911.00100100
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACTCGCAAGGAATGCGGC.............................1911.00100010
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGCAAGGAATGCGGCAAAAGGGGG....................2411.00100100
droVir3
AGCGA-AAATA-------------T-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTGT--G------T------------------------------------CA--AAA-TG--ACTGT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTA-------------TATA----------------------------------------ATTTAATTATTATT------------------------------------------------------------------------------------------------------------------------------------------------------TATTTTAGGAACGCAAGGAGTGTGGACGCAGGGGACGAAAGCCTGGCCGAAAAACSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGCAAGGAGTGTGGACGCAGGG......................2211.001000000000000000000000000000000000000010000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGACGCAGGGGACGAAAGCCTG..........2411.001000000000000000010000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGGAGTGTGGACGCAGGGGACGAA................2511.001000000000000000100000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGGGACGAAAGCCTGGCCGAA....2211.001000000000000000001000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGAGTGTGGACGCAGGG......................1811.001001000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGGGACGAAAGCCTGGCCGA.....2111.001001000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGGGACGAAAGCCTGGC........1811.001000000000000000000000000000001000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGAGTGTGGACGCAGGGGA....................2011.001100000000000000000000000000000000000000000000000000000000000000
droMoj3
TATATATATAT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATAT--A------T------------------------------------AT--ATA-TA--TATATATATATA--T---A---------------------------GACCATATACG---ACTACCG-AAGGCACTTGCTGCCAGTGCTTAGCCTTAATTTAGAGTTGA----------------------TTTTA------------------------------------------------TATTAATTGTAACT------------------------------------------------------------------------------------------------------------------T---CTTAATAATAATAATAATA------------------------------------------------------------------ATAAT--AATATATA-------------TATATAATAATATATATATATTCGTGCAATAAAGGTTTTAAACTTTTAAAACATTATA------------------------------------------------------------------------------------------------------------------------------------------------------TATTTCAGGAACGCAAGGAATGCGGACGAAGAGGACGTAAGCCGGGCAGAAAATCSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGAGGACGTAAGCCGGGC........2012.002000002
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAGGAATGCGGACGAAG........................1911.001000001
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCGGACGAAGAGGACGTAAGCCG...........2411.001000001
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGGAATGCGGACGAAGAGGACGT.................2411.001000001
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGAGGACGTAAGCCGGGCAG......2211.001000001
...................................................................................................................................................................................................................................................................................................................ACCATATACG---ACTACCG-AAGGCACTTGC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.001100000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGAGGACGTAAGCCGGGCAGAAA...2511.001100000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGCGGACGAAGAGGAC...................1811.001100000
droGri2
ATTTACAAATATG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CA----------------------T--GTG-A--A-G----TATTTA--T---T---------------------------AAC-TAAG---TT-ACTAGCAAAATGAATTTGTTGTCAGC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GAAT-------------------------------------------TTCATAATAATAATAAATTTA--------------------------------------------------------------------TTATT---------------------------------------------------------------------------------------------------------------------------------ATTTTAAGGAACGCAAAGAATGTGGACGAAGGGGTCGAAAACCTGGCAGAAAGACSizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads

Generated: 05/18/2015 at 06:35 PM