ID:

dsi_12995

 Coordinate:

3r:20261956-20262224 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-17.9 -17.5

Flybase annnotation

exon [3r_20262225_20262541_+]; CDS [3r_20262225_20262541_+]; exon [3r_20261832_20261955_+]; CDS [3r_20261832_20261955_+]; intron [3r_20261956_20262224_+]

No Repeatable elements found

Sense Strand Reads

##################################################-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
CTGTACGAGAAGAACTCGCAGCGAAAGAAGGTGCCGCCCAGGCAGAGGAAGTAAGCCCAGCAACTCTGTGCACAGCGACACTGAAACACACACCCACATCACTGCTGACCCTAATTAACTTAGCCCGCAGCTCATGTCATTCGGAAAACGCACTCATCCCCGCTCGCACTCGCACCCACTCTCATGTCCACGCCCACTAGCCCTAGCACTCATCAGAATCAGAATCAGCTTCAGAATCGGTTGTGCGTCTCTTCAATTAACTGGTCTGGTCTCGTTTGGTTTCTTTTCCATAACCACCTACTCACCCCTCACCATGTAGAAAGCAAGATCATCAAGCCAACGGACTTTCGCACTCTTTAAGCTCACTGG
***********************************************************************************************************************************.((((.....(((...............)))...((....)).........)))).(((.((..(((((.((..((((..(((.((.((.(((.....))).)).))))).))))................)).)))))...)).)))****************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR902009
testis
 O001
Testis
 M024
male body		 SRR553487
NRT_0-2 hours eggs
 M053
female body
 M025
embryo
 SRR553485
Chicharo_3 day-old ovaries
 SRR553486
Makindu_3 day-old ovaries
 SRR553488
RT_0-2 hours eggs
 SRR618934
dsim w501 ovaries
 M023
head
...................................................................................................................................TCATGTCATTCGGAAAACGCA......................................................................................................................................................................................................................... 21 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................................................................................ATTAACTGGTCTGGTCTCGTTTGG.......................................................................................... 24 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0
.................................................................................................................................................................................................................................................................................................................................................CAACGGACTTTCGCACTCTTT........... 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................................TCATCAGAATCAGAATCAGCTTCAGAA..................................................................................................................................... 27 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0
....................................................................................................................................................................................................................................CTTCAGAATCGGTTGTGCGT......................................................................................................................... 20 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
................................................................................CTGAAACACACACCCACATCAC........................................................................................................................................................................................................................................................................... 22 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
........GAAGAACTCGCAGCGAAAGAAGG.................................................................................................................................................................................................................................................................................................................................................. 23 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0
..............................................................................................CACATCACTGCTGACCCTAAT.............................................................................................................................................................................................................................................................. 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................................................................................................................................................................................TCATCAAGCCAACGGACTTTC.................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
.........AAGAACTCGCAGCGAAAGAAG................................................................................................................................................................................................................................................................................................................................................... 21 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0
.........AGGAACTCGCAGCGAAAGA..................................................................................................................................................................................................................................................................................................................................................... 19 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................CCTAGCACTCATCAGAATCAG................................................................................................................................................... 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................................TCAGAATCAGAATCAGCTTCAGAATC................................................................................................................................... 26 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0
.................................................................................................................................................................................................................................................................................................................................................CAACGGACTTTCGCACTCTTTAAGC....... 25 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................ATGTCCACGCCCACTAGCCCT..................................................................................................................................................................... 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................................................................................................TCCCGTTTGGTTTCTTTTCCT............................................................................... 21 2 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0
............................................................................................................................................................................................................................................................TCAATTAACTGGTCTGGTCTCGTT............................................................................................. 24 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0
......................................CAGGCAGAGGAGGTAAGCCCA...................................................................................................................................................................................................................................................................................................................... 21 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................................................................................CTGGTCTGGTCTCGTTTGGTTT....................................................................................... 22 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................................................................................................................................................................TTCGCACTCATGAAGCTCACT.. 21 2 3 0.33 1 0 0 0 0 1 0 0 0 0 0 0
........................................................................................................................................................................................................................................................................TCTGGTCTCCTCTGGTTTCATTT.................................................................................. 23 3 3 0.33 1 0 0 0 0 0 0 0 0 1 0 0
.............................................................................................................................CGCAGCCCATGTCAGTCAGAA............................................................................................................................................................................................................................... 21 3 3 0.33 1 0 0 0 0 0 0 0 1 0 0 0
..................................................................................................................................................................................................CACTAGCCCTAGCACT............................................................................................................................................................... 16 0 5 0.20 1 0 0 0 0 0 0 0 0 0 1 0
..GTACGAGAGGAACTCCCA............................................................................................................................................................................................................................................................................................................................................................. 18 2 6 0.17 1 0 0 0 1 0 0 0 0 0 0 0
...............................................................................................................................................................................................................................................................CTTAACTGGTCTGGT................................................................................................... 15 1 7 0.14 1 0 0 0 1 0 0 0 0 0 0 0
.......................................................................................................................................................................................................................................GTGAATCGGTTGCGCGTCT....................................................................................................................... 19 3 14 0.07 1 0 0 0 0 0 0 0 0 0 0 1
...............................................................................................................................CAGCTCTTGACATTCGG................................................................................................................................................................................................................................. 17 2 20 0.05 1 0 0 0 0 0 0 0 0 1 0 0
............................................................................................................................................................................................................................AGACTCAGCTTCAGA...................................................................................................................................... 15 1 20 0.05 1 0 0 0 0 0 0 0 1 0 0 0

Anti-sense strand reads

GACATGCTCTTCTTGAGCGTCGCTTTCTTCCACGGCGGGTCCGTCTCCTTCATTCGGGTCGTTGAGACACGTGTCGCTGTGACTTTGTGTGTGGGTGTAGTGACGACTGGGATTAATTGAATCGGGCGTCGAGTACAGTAAGCCTTTTGCGTGAGTAGGGGCGAGCGTGAGCGTGGGTGAGAGTACAGGTGCGGGTGATCGGGATCGTGAGTAGTCTTAGTCTTAGTCGAAGTCTTAGCCAACACGCAGAGAAGTTAATTGACCAGACCAGAGCAAACCAAAGAAAAGGTATTGGTGGATGAGTGGGGAGTGGTACATCTTTCGTTCTAGTAGTTCGGTTGCCTGAAAGCGTGAGAAATTCGAGTGACC
******************************************************************************************.((((.....(((...............)))...((....)).........)))).(((.((..(((((.((..((((..(((.((.((.(((.....))).)).))))).))))................)).)))))...)).)))*********************************************************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total M053
female body
 SRR553486
Makindu_3 day-old ovaries
 SRR553487
NRT_0-2 hours eggs
 SRR553488
RT_0-2 hours eggs
 M024
male body		 SRR902009
testis
 SRR618934
dsim w501 ovaries
 M023
head
 GSM343915
embryo
 O001
Testis
 SRR553485
Chicharo_3 day-old ovaries
.............................................................................................................................................................................................................................................................................AGGGCCAACCAAAGAAAAGG................................................................................ 20 2 1 26.00 26 8 3 11 3 1 0 0 0 0 0 0
.............................................................................................................................................................................................................................................................................AGTGCAAACAAAAGAAAAGG................................................................................ 20 2 6 10.00 60 0 60 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................................................................................................AGGGCCAACCAAAGAAAAG................................................................................. 19 2 2 5.00 10 4 0 3 1 1 0 1 0 0 0 0
.............................................................................................................................................................................................................................................................................AGGGCCAACCAAAGAAAAGGA............................................................................... 21 3 7 3.86 27 4 1 7 0 11 0 0 4 0 0 0
..............................................................................................................................................................................................................................................................................GGGCCAACCAAAGAAAAGG................................................................................ 19 2 3 3.33 10 9 0 1 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................................................................................................AGTGCAAACAAAAGAAAAG................................................................................. 19 2 17 2.53 43 0 43 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................................................................................................GGGCCAACCAAAGAAAAG................................................................................. 18 2 9 2.00 18 13 0 0 0 5 0 0 0 0 0 0
.............................................................................................................................................................................................................................................................................AGGGCCAACCAAAGAAAA.................................................................................. 18 2 11 1.73 19 4 4 3 4 1 0 3 0 0 0 0
...............................................................................................................................................................................................................................................................................GGCCAACCAAAGAAAAGG................................................................................ 18 2 7 1.71 12 9 0 1 2 0 0 0 0 0 0 0
............................................................................................................................................................................................................................................................................TAGGGCCAACCAAAGAAAAGG................................................................................ 21 3 4 1.50 6 6 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................GCGTCGAGTACAGTAAGCCT................................................................................................................................................................................................................................ 20 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0
............................................................................................................................................................................................................................................................................CAGGGCTAACCAAAGAAAAGG................................................................................ 21 2 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0
......................................................................................................................................................................................................................................AGTCTTAGCCAACACGCAGAGA..................................................................................................................... 22 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0
......................................................................................................................................................GTGAGTAGGGGCGAGCGTGAG...................................................................................................................................................................................................... 21 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0
..............................................................................................................................................................................................................................................................................GGGCAAACCAAAGAAAAGG................................................................................ 19 1 1 1.00 1 0 0 0 0 0 0 0 0 0 0 1
.............................................................................TGTGACTTTGTGTGTGGGTGTA.............................................................................................................................................................................................................................................................................. 22 0 1 1.00 1 0 0 0 0 0 0 0 0 0 1 0
.............................................................................................................................................................................................................................................................................AGGGCCAACCAAAGAAA................................................................................... 17 2 20 0.60 12 0 1 10 1 0 0 0 0 0 0 0
..............................................................................................................................................................................................................................TTAGTCGAAGTTTTA.................................................................................................................................... 15 1 20 0.55 11 0 0 0 0 0 0 11 0 0 0 0
...................................................................................................................................................................................................................................CGAAGTCTCATCCAACACGAA......................................................................................................................... 21 3 2 0.50 1 0 0 0 0 0 0 0 0 1 0 0
.............................................................................................................................................................................................................................................................................AGAGCCAACTAAAGAAAAGG................................................................................ 20 2 2 0.50 1 0 0 0 1 0 0 0 0 0 0 0
............................................................................................................................................................................................................................................................................................AAAGGTATTGGGGGAT..................................................................... 16 1 2 0.50 1 0 0 0 0 0 0 1 0 0 0 0
..............................CACTGCGGGTCCGTC.................................................................................................................................................................................................................................................................................................................................... 15 1 9 0.33 3 0 3 0 0 0 0 0 0 0 0 0
....................CGCTATCTGCCACGGCGGGC......................................................................................................................................................................................................................................................................................................................................... 20 3 3 0.33 1 0 0 0 0 0 0 0 0 1 0 0
..............................................................................................................................................................................................................................................................................GAGCCAACTAAAGAAAAGG................................................................................ 19 2 3 0.33 1 1 0 0 0 0 0 0 0 0 0 0
......CTGTTCTAGAGGGTCGCTTTCT..................................................................................................................................................................................................................................................................................................................................................... 22 3 3 0.33 1 0 0 0 0 0 0 0 0 1 0 0
................................................................................................................................................TTTTGCGGGAGTAGGGACGC............................................................................................................................................................................................................. 20 3 6 0.33 2 0 0 0 0 0 2 0 0 0 0 0
............................................................................................................................GGCGTCGGGTACAGTCAGTC................................................................................................................................................................................................................................. 20 3 13 0.31 4 0 4 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................................................................................TAGGGCCAACCAAAGAAAAG................................................................................. 20 3 14 0.29 4 1 0 0 0 2 0 0 1 0 0 0
.............................................................................................................................................................................................................................................................................AGAGCCAACTAAAGAAAAG................................................................................. 19 2 8 0.25 2 0 1 0 1 0 0 0 0 0 0 0
.............................CCACTGCGGGTCCGTCT................................................................................................................................................................................................................................................................................................................................... 17 1 4 0.25 1 0 0 0 1 0 0 0 0 0 0 0
..............................CACTGCGGGTCCGTCTC.................................................................................................................................................................................................................................................................................................................................. 17 1 4 0.25 1 0 1 0 0 0 0 0 0 0 0 0
...............................ACTGCGGGTCCGTCT................................................................................................................................................................................................................................................................................................................................... 15 1 11 0.18 2 0 2 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................................................................................................GTGCAAACAAAAGAAAAGG................................................................................ 19 2 11 0.18 2 0 2 0 0 0 0 0 0 0 0 0
................................................................................................................................................................................................................................................................................................................................TACGTTCTAGTAGTTGGG............................... 18 2 7 0.14 1 0 0 0 0 0 0 1 0 0 0 0
.............................................................................................................................................................................................................................................................................AGAGCCAACTAAAGAAAAGGA............................................................................... 21 3 7 0.14 1 0 0 1 0 0 0 0 0 0 0 0
.............................ACACTGCGGGTCCGTCT................................................................................................................................................................................................................................................................................................................................... 17 2 15 0.13 2 0 2 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................................................................................TAGTGCCAACCAAAGAAAAG................................................................................. 20 3 10 0.10 1 0 1 0 0 0 0 0 0 0 0 0
.............................ACACTGCGGGTCCGTC.................................................................................................................................................................................................................................................................................................................................... 16 2 20 0.10 2 0 2 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................................................................................................GGCCAACCAAAGAAAAG................................................................................. 17 2 20 0.10 2 0 1 1 0 0 0 0 0 0 0 0
........................................................................................................................................................................................................................................................................................................GGAAGAGTGGGGAGT.......................................................... 15 1 11 0.09 1 0 0 0 1 0 0 0 0 0 0 0
..............................................................................................GTGTAGTGGCGACGGGTATT............................................................................................................................................................................................................................................................... 20 3 12 0.08 1 0 0 0 0 0 0 0 0 1 0 0
................................................................................................................................................................................................................................................................................................GTATCGGTGGATGAG.................................................................. 15 1 13 0.08 1 0 0 0 0 0 0 1 0 0 0 0
..............................................................................................................................................................................................................................................................................GAGCCAACTAAAGAAAAG................................................................................. 18 2 15 0.07 1 0 0 1 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................................................................................................................................................................TTAGGTTGCCTGAAA..................... 15 1 18 0.06 1 0 0 0 0 0 0 1 0 0 0 0
.............................CCACTGTGGGTCCGTCT................................................................................................................................................................................................................................................................................................................................... 17 2 19 0.05 1 0 0 1 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................................................AGTCTTAGCGAACGCG........................................................................................................................... 16 2 20 0.05 1 0 0 0 1 0 0 0 0 0 0 0
............................................................................................................................................................................................................................................................................TAGTGCCAACCAAAGAAAA.................................................................................. 19 3 20 0.05 1 0 0 0 0 1 0 0 0 0 0 0
............................................................................................................................................................................................................................................................................................................................................GTTAGGTTGCCTGCAA..................... 16 2 20 0.05 1 0 0 0 0 0 0 1 0 0 0 0
....................................................................................................................................................................................................................................................................................ACCAATGAAAAGGCATTGTT......................................................................... 20 3 20 0.05 1 0 0 0 0 0 0 1 0 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim2 3r:20261906-20262274 + dsi_12995 CTGTACGAGAAGAACTCGCAGCGAAAGAAGGTGCCG---------------CCCAGGCAGAGGAAGTAAGC--CC-AG-CAACTCT-----------------GTGCACAGCGACACTGAAACA---------C----------A--C----A-----------------CCCACATC-----ACTG-------C--------------------------------------------------------------TGACCCTAATTAAC-----------------------------------------------------------------------TTAGCCCGCAGCTCATGTCAT-------TCGGAAA-ACGC-----ACTCATCCC----CG-C------TCGC------------------ACTCGCA---CCC---A--CT--CTCAT--------------------------G--TCCACGCCCACTA-GCCCTAGCACTCATCAGAATCAGAATCAGCTT-CAGAATCG--------------GTTGTGCGTC------------------TCTTCAATT---AAC--TGGTCTGGTC-TCGTT-T-----GGTTTCT--TTTCC----A--------TAACC------------------------ACCTAC--------------------TCACCC-CT--CACCATGTAGAAAGCA---AGATCATCAAGCCA---ACGGACTTTCGCACTCTTTAAGCTCACTGG
droSec2 scaffold_0:21092764-21093132 + CTGTACGAGAAGAACTCGCAGCGAAAGAAGGTGCCG---------------CCCAGGCAGAGGAAGTAAGC--CC-AG-CAACTCC-----------------ATGCACAGCGACACTGAAACA---------C----------A--C----A-----------------CCCACGTC-----ACTG-------C--------------------------------------------------------------TGACCCTAATTAAC-----------------------------------------------------------------------TTAGCCCGCAGCTCATGTCAT-------TCGGAAA-ACGC-----ACTCATCCC----CG-C------TCGC------------------ACTCGCA---CCC---A--CT--CTCAT--------------------------G--TCCACGCCCACTA-GCCCTAGCATTCATCAGAATCAGAATCAGCTT-CAGAATCG--------------GTTGTGCGTC------------------TCTTCAATT---AAC--TGGTCTGGGC-TCGTT-T-----GGTTTCT--TTTCC----A--------TAACC------------------------ACCTAC--------------------TCACCC-CT--CACCATGTAGAAAGCA---AGATCATCAAGCCA---ACGGACTTTCGCACTCTTTAAGCTCACTGG
dm3 chr3R:20745720-20746088 + CTGTACGAGAAGAACTCGCAACGACAGAAGGTGCCG---------------CCCAGGCAGAGGAAGTAAGC--CC-AG-CAACTCC-----------------ATGCACAGTGACACTGAAACA---------C----------A--C----A-----------------CCCACATC-----ACTG-------C--------------------------------------------------------------TGACCCTAATTAAC-----------------------------------------------------------------------TTAGCCCGCAGCTCATGTCAT-------TCGGAAA-ACGC-----ACTCATCCC----CG-C------TCGC------------------ACTCGCA---CCC---A--CT--CTCAT--------------------------G--TCCACGCCCACTA-GCCCTAGCACTCATCAGAATCAGAATCAGCTT-CAGAATCG--------------GTTGTGCGTC------------------TCTTCAATT---AAC--TGGTCTGGTT-TCGTT-T-----GGTTTCT--TTTCA----A--------TAACC------------------------ACATAC--------------------TCACCC-CT--CACCATGTAGAAAGCA---AGATCATCAAGCCA---ACGGACTTTCGCACTCTTTAAGCTCACTGG
droEre2 scaffold_4820:7303480-7303844 - CTGTACGAGAAGAACTCGCAGCGACAGAAGGTGCCG---------------CCCAGGCAGAGGAAGTAAGC--CC-AG-CAACTCC-----------------ATGCACTGCGACATTGATACA---------C----------ACAC----A-----------------CCCACATC-----TTTG-------C--------------------------------------------------------------TGACCCTAATTAAC-----------------------------------------------------------------------TTAGCCCGCAGCTCATGTCAT-------TTGGAAA-GCGC-----ACTCATCCC----CG-C------TCGC------------------ACTCGTA---CCC---A--CT--CTCAT--------------------------G--TCCACGCCCACTA-GCCCTAGCACTCATCAGAA------TCAGCTT-CAGAATCG--------------GTTGTGCGTT------------------TCTTCAATT---AAC--TGGTCTGGTC-TCGTT-T-----GGTTTCT--TTTCC----A--------TAACC------------------------ACCTAC--------------------TCATCC-CT--CATCATGTAGAAAGCA---AGATCATCAAGCCA---ACGGACTTTCGCACTCTTTAAGCTCACTGG
droYak3 3R:25748991-25749361 - CTGTACGAGAAGAACTCGCAGCGACAGAAGGTGCCG---------------CCCAGGCAGAGGAAGTAAGC--CC-AG-CAACTCC-----------------ATGCACTGCGACATTGATACA---------T----------A--C----AC---------ACAACCACCCACATC-----TCTG-------C--------------------------------------------------------------TGACCCTAATTAAC-----------------------------------------------------------------------TTAGCCCGCAGCTCATGTCAT-------TTGGAAA-GCGC-----ACTCATCCC----CG-C------TCGC------------------ACTCGTA---CCC---A--CT--CTCAT--------------------------G--TCCACGCCCACTA-GCCCTAGCACTCATCAGAA------TCAGCTT-CAGAATCG--------------GTTGTGCGTC------------------TCTTCAATT---AAC--TGGTCTGGTC-TCGTT-T-----GGTTTCT--TTTCC----A--------TAACC------------------------ACCTAC--------------------TCACAC-CC--CACCATGTAGAAAGCA---AGATCATCAAGCCA---ACGGACTTTCGCACTCTTTAAGCTCACTGG
droEug1 scf7180000409692:655873-656235 - CTGTACGAGAAGAACTCGCAGCGACAGAAGCTACCG---------------CCTAGGCAGAGGAAGTAAGC--CC-AG-CAACTCC-----------------ATGCATTGCGATACTGAGACA---------C----------C--C----A-----------------CCCACATC-----TTTG-------C--------------------------------------------------------------TGACCCTAATTAAC-----------------------------------------------------------------------TTAGCCCGCAGCTCATGTCAT-------TCGGAAA-GCGC-----ACTCATCCC----CA-C------TTGC------------------ACTCGTA---CCC---A--CT--TTCAT--------------------------G--TCCACGCCCACTA-GCCCTAGCACTCATCAGAA------TTAGCTT-CAACATCG--------------ATTGTGCGTC------------------TCTTCAATT---AAC--TGGTCTGGTC-TCGTT-T-----GGTCTCT--ATTCC----A--------TAACC------------------------ACCCAC--------------------TCACCC-CT--CGCCATGTAGAAAGCA---AGATCATCAAGCCA---ACGGACTTTCGCACTCTTTAAGCTCTCTGG
droBia1 scf7180000302402:4541267-4541635 + CTGTACGAGAAGAACTCGCAGCGACTGAAGCTGCCG---------------CCCAGGCAGAGGAAGTAAGC--CC-AT-CACCACCATGCAC-----------ATGCACTGCGACACTGAGCCA---------C----------A--C----A-----------------CCCACATC-----TTTG-------C--------------------------------------------------------------TGACCCTAATTAAC-----------------------------------------------------------------------TTAGCCCGCAGCTCATGACAT-------TCGGAAA-ACGC-----ACTCATCCC----CA-C------TCGC------------------ACTCGTA---CCC---A--CT--CTCAT--------------------------G--TCCACGCCCACTA-GCCCTTGCACCCATCAGAA------TCAGCTT-TAGAATCG--------------GTTGTGCGTC------------------TCTTCAATT---AAC--TGGTCTGGTC-TCGTT-T-----GGTCTCT--CTTCC----A--------TAACC------------------------ACCTAC--------------------TCACCC-CT--CACCAAGTAGAAAGCC---AGATCATCAAGCCA---ACGGACTTTCGCACTCTTTAAGCTCGCTGG
droTak1 scf7180000415310:369292-369664 - CTGTACGAGAAGAACTCGCAGCGACTGAAGCTGCCG---------------CCCAGGCAGAGGAAGTAAGC--CC-AT-CAACTCC-----------------ATGCACTACGACACTGCGACA---------C----------A--C----A-----------------CCCACATC-----TTTG-------C--------------------------------------------------------------TGACCCTAATTAAC-----------------------------------------------------------------------TTAGCCCGCAGCTCATGTCAT-------TCGGAAA-GCGC-----ACTCATCCC----CA-C------TCGC------------------ACTCGTC---CCC---A--CT--CTCAT--------CCAA--------------G--TCCACGCCCACTA-GCCCTAGCACTCATCAGAATCAGAATCAGCTT-CAGAATCG--------------GTTGTGCGTC------------------TCTTCAATT---AAC--TGGTCTGGTC-TCGTT-T-----GGTCTCT--CTTCC----A--------TAACC------------------------ACCTAC--------------------TCACCC-CT--CGCCAAGTAGAAAGCC---AGATCATCAAGCCA---ACGGACTTTCGCACTCTTTAAGCTCGCTGG
droEle1 scf7180000491212:46202-46590 + CTGTTCGAGAAGAACTCGCAGCGCCAGAAGCTGCCG---------------CCAAGACAGAGGAAGTAAGC--CC-AG-CCACTC------------------------TGCGACACTGAGAAA---------C----------A--C----A-----------------CCCACATC-----TTTG-------C--------------------------------------------------------------TGACCCTAATTAAC-----------------------------------------------------------------------TTAGCCCGCAGCTCATATCAT-------TCGGAAA-GCGC-----ACTCATCCC-AACCA-C------TCGC------------------ACTCGAACAACCC---A--CC--CTCAT--------------------------G--TCCACGCCCACTA-GCCCTAGCACTCATCAGAA------TCAGCTT-CGGAATCG--------AATTCGGTTGTGCGTC------------------TCTTCAACT---AAC--TGGTCTGGTC-TCGTT-T-----GGTCTCT--CTTTC----A--------TAACCACCACCACCA---------CCACCACCCAC--------------------TCACTT-CT--CGTCAAGTAGAAAGCAACAAGATCACCAAGTCAACAACGGACTTTCGCACTCTTTAAGCTCGCTGG
droRho1 scf7180000779488:36364-36726 - CTGTACGAGAAGAACTCTCAGCGCCAGAAGCTGCCG---------------CCCAGGCAGAGGAAGTAAGC--CC-AG-CAACACC-----------------ATGCTCTGCAATACTGAGACA---------C----------A--C----A-----------------CCCACATC-----TTTG-------C--------------------------------------------------------------TGACCCTAATTAAC-----------------------------------------------------------------------TTAGCCCGCAGCTCATGTCAT-------TCGGAAA-GCGC-----ACTCATCCC----CA-C------TCGC------------------ACTCGTA---CCC---A--CT--CTCAT--------------------------G--TCCACGCCCACTA-GCCCTAGCACTCATCAGAA------TCAACTT-CAGAATCG--------------GTTGTGCGTC------------------TCTTCAATT---AAC--TGGTCTGGTC-TCGTT-T-----GGTCTCT--TTTCC----A--------TAACC------------------------ACCCAC--------------------TCACCC-CT--CGCCATGTAGAAAGCA---AGATCACCAAGCCA---ACGGACTTTCGCACTCTTTAAGCTCGCTGG
droFic1 scf7180000454055:643915-644288 + CTGTATGAGAAGAACTCGCAGCGCCAGAAGCTGCCG---------------CCAAGGCAGAGGAAGTAAGC--CC-AG-CACGACC-----------------ATGCACTGCGACACTGAGACA---------C----------A--C----AT----------------CCCACATC-----TTTG-------C--------------------------------------------------------------TGACCCTAATTAAC-----------------------------------------------------------------------TTAGCCCGCAGCTCATGTCAT-------TCGGAAAAGCGC-----ACTCATCCC----CA-C------TCGC------------------ACCCGTA---CCCACCA--CT--TTCAT--------------------------G--TCCACGCCCACTA-GCCCTAGCACTCATCAGAAACAGAATCAGCTT-CAGAATCG--------------GTTGTGCGTC------------------TCTTCAATT---AAC--TGGTCTGGTC-TCGTT-T-----GGTCTCT--CTTCC----A--------TAACC------------------------ACCCAC--------------------TCACCC-CT--CGCCAAGTAGAAAGCA---AGATCATCAAGCCA---ACGGACTTTCGCACTCTTTAAGCTCGCTGG
droKik1 scf7180000302461:2248838-2249229 - CTGTATGAGAAGAACTCGCAGCGCCAGAAGCAACCG------------TCGGCCAGGCAGAGGAAGTAAGCAACC-AG-CAGCACCATA--------------ATGCACTGAGAC--------A---------CGC----CCACA--C----A-----------------CCCACATGCACT-ACTG-------C--------------------------------------------------------------TGACCCTAATTAAC-----------------------------------------------------------------------TTAGCCCGCAGCTCATATCATTGTCATGTCGGAGA-GCGC-----ACTCATCCC----CA-C------TCGC------------------ACTTGAA---CC----A--TTCACTCAT--GTC---CCAAGTCCA----A----G--CCCTCGCCCACTAAGCCC--ACACACAT-------------------CAGACTCG--------------GTTGCGCGT-------------------TCTTCAATT---AACTCTGGTCTGGATATCGTT-T-----GATCTCT-TCTTCC----A--------TAACAACCACCC--------------GCCACTCAC--------------------TCAATC-CTC-CGCCAAATAGAAAGCA---AGAT---CAAGTCA---ACGGACTCTCGCACTCTTTAAGCTCGCTGG
droAna3 scaffold_13340:18903459-18903849 - CTCTATGAGAAGAACTCCCAGCGGCAGAAGCTGCCA---------------GCCCGGCAGAGGAAGTAAGC--CC-AG-AGAATC-ATATAAATG----TACCATGCACTGAGAC--------A---------CGC----C----CAC----A-----------------CCCGCATCTTCT-TTTG-------C--------------------------------------------------------------TGACCCCAATTAAC-----------------------------------------------------------------------TCGGCCCACAGATCATGTCAT-------TCGGAAA-GCAC-----ACTCATCCC-T---T-C------T---CTCCCACTCGCCCTCCGCACTTATA---CCC---A--TT--CTCAT--------------------------G--TCCACGCCCACTA-GCCCTAGCACTCATAAGAA------T-AGACT-CGGAATCG--------------GTTGCGCGGT------------------TCTTCAATT---AAC--TGGTCTGGTA-CCGTT-T-----GGTCTCTTTCTTCC----A--------TAACC------------------------ACCCAC--------------------TCACTCACTCGCGTCACGTAGAAAGCA---AGAT---CAAGCCA---ATGGACTTTCGCACTCTTTAAGCTCGCTGG
droBip1 scf7180000395652:274163-274548 + CTCTATGAGAAGAACTCCCAGCGCCAGAAGCTGCCG---------------GCCCGGCAGAGGAAGTAAGC--TC-AG-AGAATC-ATACACATG----AACCATGCACTGAGAC--------A---------CGC----C----CAC----A-----------------CCCGCATC---T-TTTG-------C--------------------------------------------------------------TGACCCCAATTAAC-----------------------------------------------------------------------TCAGCCCACAGCTCATGTCAT-------TTGGAAA-GCAC-----ACTCATCCC-T---T-C------T---CTCCCACTCGCCCTTCGCACTTATA---CCC---A--CT--CTCAT--------------------------G--TCCACGCCCACTT-GCCCTAGCACTCATAAGAA------T-AGATT-CAGAATCG--------------GTTGCGCGGC------------------TCTTCAATT---AAC--TGGTCTGGTA-CCGTT-T-----GGTCTCT--CTTCC----A--------TAACC------------------------ACCCAC--------------------TCACTCACTCGCGTCTCGTAGAAAGCA---AGAT---CAAGCCA---ATGGACTTTCGCACTCTTTAAGCTCGCTGG
dp5 2:10987226-10987653 - TTGTTTGAAAAGAACTCGCAGCGCCAGAAGCTGTCCAAGCTGCGCGATTCGGCGAGGCAGAGGAAGTAAGC--CCCAG-CACCA--------GTGCCCTAACCATGTCTTGGGGC--------A---------CGCACGCCCA----TAC--------------CAACCAA-CACAT--TCTCACTGCTGTTTGTCG------------------------------TTCTCACTCGTAATGTGTCTGTTAATGTCGTGACCTTAATTAACCC--------------------------------------------------------------------CTTGCTCTGCAGCTCATGTCAT-------TCGGAAA-ACGCACTGCACTCATCCC-AAC-T-C------TTGC------------------ACCCAC----------A--CA--CTCAC--------------------------G--CCCACGCCCACTA-CC----------------------ATCATCGT-CAGAATCG--------------ATTGCTCCAC--------------ACACTCTTCAATT---AAC--CGGTCTGGTC-TTAA--T-----GGTCTTT--CTTCC----A--------TAACC-CCATTCGCC----------------------------------------CCACCG-CT--CC-CCTATAGAAACCA---AGAT---CAAGCCA---ACGGACTTTCGCACTCTTTAAGCTCGCTGG
droPer2 scaffold_0:9479800-9480227 + TTGTTTGAAAAGAACTCGCAGCGCCAGAAGCTGTCCAAGCTGCGCGATTCGGCGAGGCAGAGGAAGTAAGC--CCCAG-CACCA--------GTGCCCTAACCATGTCTTGTGGC--------A---------CGCACGCCCA----TAC--------------CAACCAA-CACAT--TCTCACTGCTGTTTGTCG------------------------------TTCTCACTCGTAATGTGTCTTTTAATGTCGTGACCTTAATTAACCC--------------------------------------------------------------------CTTGCTCTGCAGCTCATGTCAT-------TCGGAAA-ACGCACTGCACTCATCCC-AAC-T-C------TTGC------------------ACCCAC----------A--CA--CTCAC--------------------------G--CCCACGCCCACTA-CC----------------------ATCATCGT-CAGAATCG--------------ATTGCTCCAC--------------ACACTCTTCAATT---AAC--CGGTCTGGTC-TTAA--T-----GGTCTTT--CTTCC----A--------TAACC-CCATTCGCC----------------------------------------CCACCG-CT--CC-CCTATAGAAACCA---AGAT---CAAGCCA---ACGGACTTTCGCACTCTTTAAGCTCGCTGG
droWil2 scf2_1100000004943:12670981-12671396 - TTATTTGAAAAGAATTCGCAACGCAAGAAACTGGTCAAACCAAACGATCTAACCAGGGCGAGGAAGTAAGA--CA-AC-AGAATA--------------------GCCATGTGGC--------A---------C---CGCCTACA--C----ATTATTTATGTACAACCAA-CATGC--TCTCACCAC---TTGTTG------------------------------TTATTA--------------------ATTGTGACCTCAATTAACCAA---CTACC---------------------------AATCAGC--------------------------TCAGCT--CAGCTCATGTTAT-------ATGGAAA-CTGC-----ACTCATCCC----CAAT------TTGC------------------ACCCACA---TTC---AAACA--CACAT--------------------------G--CACACACACAC---GCAC---------------------------------ATTGGTTTGGCTCATTCAGTCACATTCT------------------TCATCAATTTCTAAT-CGGGTCTGGTC-TAATTCT-----AATTTCT--CTTTC----A--------TAACC------------------------ATTCAC--------------------TCAATACCACGAAACCCATAGAAAGCA---AGAT---CAAGCAA---ACGGACTTTCGCACTCTTTAAGCTCGCTGG
droVir3 scaffold_12855:2485403-2485937 + dvi_3562 CTCTATGAAAAGAACATACAGCGGCCGAATCAAGCCAAGCTAAGCGATCAATCGAAGCTGAGGAAGTAAGC--CA-ACGC-ACTA------------------------ACTGACTATGTGACA---------C----------G--C----CC----------------CCCATGTT-----ACTG-------TTGT---------------------------TGTTCTA---------------------ATTGTGAACTCAATTAACCATCAAACGCAAGCGGCATTAATTTGTATGTGTGCTCAGATCAGATCAGCTCAGCTCCAGATCCAGAACTC--------ATGCTCATGGC---------TCGGAAT-ACAT--AGAACTCATACCGAAC-T-CACGCACCCGC------------------ACTCGCACA-CCCACCA--TT--CACACACTCACACACAAGCACACACAAGCACA--CACACGCACGCAC-GCACTAGCACACATCAG-------------TT-CAGAATTG--------------GTTGGTAATTTCATTTTTTATCGAAGCGCCTTCATAT---AAC--GGTTTTGGTT-TTCTT-T-TTTTTATCTCT--CTTCC----A----------ACT-----------ACTTTCAACTACCACCCCGCCTCAAAAAAAAAACTCCCCTAACTT-AA--CC-ACAGTAGAAAGCA---AGACCATCCACCAA---ATGGACTTTCGCACTCTTTAAGCTCTTTGG
droMoj3 scaffold_6540:11696622-11697136 + CTCTACGAGAAGAATGTACAGCGGCCGAAGCAGGCCAAGCTTAGCGATCCATCCAAGCAGAGGAAGTAAGC--CA-ACGC-ACGCA-----------CT----AACCACTGAACCACTGAAATACATGTGACACGC----C----CACATGCA-----------------CCCAAGTA-----ACTT-------CTCTCTCATATGCGCCCACATTAAATACACATGTTATAA--------------------TTTGTGAGATCAATTAACGAA---ATGCA---GGCATTAATTTGTATGTGAACTCCGATC----------GGCTCCAGAA-TAGAATTCATGCTCATCATCCTATGTCAC-------TCGCA-C-GCAC-----ACTCACGCA----CG-C------ACGC------------------ACGC--A---CAC---A--C-------------------------------------------------------TCACACACA---------------GCGTACTCAATTG--------------GTTGGTAGTTCTTTTAATTGCCACAGCGCCTTCATAT---AAC--GGGTCTGGTC-TTCTC-TCTCTTTATCTCT--TTCTCTCTCTCTCCCACATAACA-CTA---------------CTACCACCCTC--TCAAAAAACAAACTG---TAACTA-CT--TG-ACTGTAGCAAGCA---AGTTCCTCCACCAA---ATGGACTTTCGCACTCTTTAAGCTCGTTGG
droGri2 scaffold_14624:2453107-2453341 - C-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GC-----ATTCATACA----CA-A------CACA-----ACTTGC-------A---------CCC----------TGCAC--------------------------GACTCCACACTCACAT-GC---AGCACTCATCG--------------AT-CGGAAATG--------------GTTGGTTGGTTCGT------ACGAAGCGCCTTCATAA---AAC--GGGTTCGGTCATTATT-T-----GATCTCT--TTCTC----TCTTCCACATAACC-TAATCCAACTAACTGCAACTGC----------------------------AACTA-CG--AA-TCTGTAGCAAGCA---AGAC---CAAACCA---ATGGACTTTCGCACTCTTTAAGCTCACTGG

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
CTGTACGAGAAGAACTCGCAGCGAAAGAAGGTGCCG---------------CCCAGGCAGAGGAAGTAAGC--CC-AG-CAACTCT-----------------GTGCACAGCGACACTGAAACA---------C----------A--C----A-----------------CCCACATC-----ACTG-------C--------------------------------------------------------------TGACCCTAATTAAC-----------------------------------------------------------------------TTAGCCCGCAGCTCATGTCAT-------TCGGAAA-ACGC-----ACTCATCCC----CG-C------TCGC------------------ACTCGCA---CCC---A--CT--CTCAT--------------------------G--TCCACGCCCACTA-GCCCTAGCACTCATCAGAATCAGAATCAGCTT-CAGAATCG--------------GTTGTGCGTC------------------TCTTCAATT---AAC--TGGTCTGGTC-TCGTT-T-----GGTTTCT--TTTCC----A--------TAACC------------------------ACCTAC--------------------TCACCC-CT--CACCATGTAGAAAGCA---AGATCATCAAGCCA---ACGGACTTTCGCACTCTTTAAGCTCACTGGSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
..................................................................................................................................................................................................................................................................................................................................................................TCATGTCAT-------TCGGAAA-ACGC-----A.............................................................................................................................................................................................................................................................................................................................................................................................................2112.00200000000000002000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATT---AAC--TGGTCTGGTC-TCGTT-T-----GG.............................................................................................................................................................2411.00100100000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CA---ACGGACTTTCGCACTCTTT...........2111.00100001000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCATCAGAATCAGAATCAGCTT-CAGAA....................................................................................................................................................................................................................................................2711.00100000000100000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTT-CAGAATCG--------------GTTGTGCGT..........................................................................................................................................................................................................................2011.00100000000000001000
....................................................................................................................CTGAAACA---------C----------A--C----A-----------------CCCACATC-----AC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.00100001000000000000
........GAAGAACTCGCAGCGAAAGAAGG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.00101000000000000000
............................................................................................................................................................................CACATC-----ACTG-------C--------------------------------------------------------------TGACCCTAAT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100001000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCATCAAGCCA---ACGGACTTTC....................2111.00100000000000001000
.........AAGAACTCGCAGCGAAAGAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00101000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCTAGCACTCATCAGAATCAG...................................................................................................................................................................................................................................................................2111.00100001000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCAGAATCAGAATCAGCTT-CAGAATC..................................................................................................................................................................................................................................................2611.00100000010000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CA---ACGGACTTTCGCACTCTTTAAGC.......2511.00101000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................AT--------------------------G--TCCACGCCCACTA-GCCCT.....................................................................................................................................................................................................................................................................................2111.00100001000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCAATT---AAC--TGGTCTGGTC-TCGTT-.....................................................................................................................................................................2411.00100010000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................C--TGGTCTGGTC-TCGTT-T-----GGTTT..........................................................................................................................................................2211.00100000000000001000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACTA-GCCCTAGCACT...............................................................................................................................................................................................................................................................................1650.20100000000001000000
droSec2
CTGTACGAGAAGAACTCGCAGCGAAAGAAGGTGCCG---------------CCCAGGCAGAGGAAGTAAGC--CC-AG-CAACTCC-----------------ATGCACAGCGACACTGAAACA---------C----------A--C----A-----------------CCCACGTC-----ACTG-------C--------------------------------------------------------------TGACCCTAATTAAC-----------------------------------------------------------------------TTAGCCCGCAGCTCATGTCAT-------TCGGAAA-ACGC-----ACTCATCCC----CG-C------TCGC------------------ACTCGCA---CCC---A--CT--CTCAT--------------------------G--TCCACGCCCACTA-GCCCTAGCATTCATCAGAATCAGAATCAGCTT-CAGAATCG--------------GTTGTGCGTC------------------TCTTCAATT---AAC--TGGTCTGGGC-TCGTT-T-----GGTTTCT--TTTCC----A--------TAACC------------------------ACCTAC--------------------TCACCC-CT--CACCATGTAGAAAGCA---AGATCATCAAGCCA---ACGGACTTTCGCACTCTTTAAGCTCACTGGSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
..GTACGAGAAGAACTCGCA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1820.5010010
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCAGCTT-CAGAATCG--------------GTTGTG.............................................................................................................................................................................................................................2220.5010100
.......................................................................................................................................................................................................................................................................................................................................................................................AA-ACGC-----ACTCATCCC----CG-C------TCGC------------------ACTCG............................................................................................................................................................................................................................................................................................................................................................2720.5010010
dm3
CTGTACGAGAAGAACTCGCAACGACAGAAGGTGCCG---------------CCCAGGCAGAGGAAGTAAGC--CC-AG-CAACTCC-----------------ATGCACAGTGACACTGAAACA---------C----------A--C----A-----------------CCCACATC-----ACTG-------C--------------------------------------------------------------TGACCCTAATTAAC-----------------------------------------------------------------------TTAGCCCGCAGCTCATGTCAT-------TCGGAAA-ACGC-----ACTCATCCC----CG-C------TCGC------------------ACTCGCA---CCC---A--CT--CTCAT--------------------------G--TCCACGCCCACTA-GCCCTAGCACTCATCAGAATCAGAATCAGCTT-CAGAATCG--------------GTTGTGCGTC------------------TCTTCAATT---AAC--TGGTCTGGTT-TCGTT-T-----GGTTTCT--TTTCA----A--------TAACC------------------------ACATAC--------------------TCACCC-CT--CACCATGTAGAAAGCA---AGATCATCAAGCCA---ACGGACTTTCGCACTCTTTAAGCTCACTGGSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCACTCATCAGAATCAGAATCAGCT...........................................................................................................................................................................................................................................................2512.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCATCAAGCCA---ACGGACTTTCGCAC................2612.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................ATGTCAT-------TCGGAAA-ACGC-----ACTC..........................................................................................................................................................................................................................................................................................................................................................................................................2212.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGCA---CCC---A--CT--CTCAT--------------------------G--TCCA....................................................................................................................................................................................................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCAAGCCA---ACGGACTTTCGCACTCTT............2712.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................TGAAACA---------C----------A--C----A-----------------CCCACATC-----AC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2112.0020000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCAGAATCAGAATCAGCTT-C........................................................................................................................................................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................CTCATCCC----CG-C------TCGC------------------ACTCGCA---CCC---A--..............................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..GTACGAGAAGAACTCGCAACGACAGAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATCAGAATCAGCTT-CAGAAT...................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACCATGTAGAAAGCA---AGATC..........................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.TGTACGAGAAGAACTCGCAACGAC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCAAGCCA---ACGGACTTTCGCACTCT.............2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................GCAGCTCATGTCAT-------TCGGAA.........................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................CTCATCCC----CG-C------TCGC------------------ACTCGCA---CCC---C--..............................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................AGCTCATGTCAT-------TCGGAAA-AC.....................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................CGCAGCTCATGTCAT-------TCGGAA.........................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................CACAGTGACACTGAAACA---------C----------A--C----A-----------------CCCA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T--TTTCA----A--------TAACC------------------------ACATAC--------------------TCACCC-CT--..................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................CCAGGCAGAGGAAGTAAGC--CC-A....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGCCA---ACGGACTTTCGCACT...............2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CA---AGATCATCAAGCCA---ACGGA.........................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000
...TACGAGAAGAACTCGCAACGACAGAA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................CTAATTAAC-----------------------------------------------------------------------TTAGCCCGCAGC...............................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCT--TTTCA----A--------TAACC------------------------ACATAC--------------------TCACCC-CT--..................................................................2911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................CAGTGACACTGAAACA---------C----------A--C----A-----------------C......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................AT--------------------------G--TCCACGCCCACTA-GCCCTAG...................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCTT-CAGAATCG--------------GTTGTGCGTC------------------TCTTT..................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGAATCAGAATCAGCTT-CAG......................................................................................................................................................................................................................................................2111.0010000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCACCC-CT--CACCATGTAGAAAGCA---AGA............................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCAAGCCA---ACGGACTTTCGCACTCT.............2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................GACAGAAGGTGCCG---------------CCCAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACCC-CT--CACCATGTAGAAAGCA---A..............................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGAATCAGAATCAGCTT-CAGA.....................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTTCGCACTCTTTAAGCTCA....2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCAGAATCAGAATCAGCT...........................................................................................................................................................................................................................................................1821.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........AAGAACTCGCAACGACAGAAGG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................CT--CTCAT--------------------------G--TCCACGCCCACTA-..........................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAC--TGGTCTGGTT-TCGTT-T-----GG.............................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGCCA---ACGGACTTTCGCACTCTTT...........2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................CA---------C----------A--C----A-----------------CCCACATC-----ACTG-------C--------------------------------------------------------------TGA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAATCG--------------GTTGTGCGTC------------------TCTA...................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................CATGTCAT-------TCGGAAA-ACGC-----ACTCA.........................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCAATT---AAC--TGGTCTGGTT-TCGTT-T-----GGT............................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................CG---------------CCCAGGCAGAGGAAGTAAGC--CC-A....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................GCTCATGTCAT-------TCGGAAA-ACGC-----ACT...........................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TA-GCCCTAGCACTCATCAGAATCAGAA.................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A--------TAACC------------------------ACATAC--------------------TCACCC-CT--CACCA.............................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................AG-CAACTCC-----------------ATGCACAGTGAC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTT-CAGAATCG--------------GTTGAC.............................................................................................................................................................................................................................1870.1410000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000
droEre2
CTGTACGAGAAGAACTCGCAGCGACAGAAGGTGCCG---------------CCCAGGCAGAGGAAGTAAGC--CC-AG-CAACTCC-----------------ATGCACTGCGACATTGATACA---------C----------ACAC----A-----------------CCCACATC-----TTTG-------C--------------------------------------------------------------TGACCCTAATTAAC-----------------------------------------------------------------------TTAGCCCGCAGCTCATGTCAT-------TTGGAAA-GCGC-----ACTCATCCC----CG-C------TCGC------------------ACTCGTA---CCC---A--CT--CTCAT--------------------------G--TCCACGCCCACTA-GCCCTAGCACTCATCAGAA------TCAGCTT-CAGAATCG--------------GTTGTGCGTT------------------TCTTCAATT---AAC--TGGTCTGGTC-TCGTT-T-----GGTTTCT--TTTCC----A--------TAACC------------------------ACCTAC--------------------TCATCC-CT--CATCATGTAGAAAGCA---AGATCATCAAGCCA---ACGGACTTTCGCACTCTTTAAGCTCACTGGSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCCA---ACGGACTTTCGCACTCTT............2311.0011000000
droYak3
CTGTACGAGAAGAACTCGCAGCGACAGAAGGTGCCG---------------CCCAGGCAGAGGAAGTAAGC--CC-AG-CAACTCC-----------------ATGCACTGCGACATTGATACA---------T----------A--C----AC---------ACAACCACCCACATC-----TCTG-------C--------------------------------------------------------------TGACCCTAATTAAC-----------------------------------------------------------------------TTAGCCCGCAGCTCATGTCAT-------TTGGAAA-GCGC-----ACTCATCCC----CG-C------TCGC------------------ACTCGTA---CCC---A--CT--CTCAT--------------------------G--TCCACGCCCACTA-GCCCTAGCACTCATCAGAA------TCAGCTT-CAGAATCG--------------GTTGTGCGTC------------------TCTTCAATT---AAC--TGGTCTGGTC-TCGTT-T-----GGTTTCT--TTTCC----A--------TAACC------------------------ACCTAC--------------------TCACAC-CC--CACCATGTAGAAAGCA---AGATCATCAAGCCA---ACGGACTTTCGCACTCTTTAAGCTCACTGGSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCCA---ACGGACTTTCGCACTC..............2111.00110000000000
......................GACAGAAGGTGCCG---------------CCCAGGC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00101000000000
droEug1
CTGTACGAGAAGAACTCGCAGCGACAGAAGCTACCG---------------CCTAGGCAGAGGAAGTAAGC--CC-AG-CAACTCC-----------------ATGCATTGCGATACTGAGACA---------C----------C--C----A-----------------CCCACATC-----TTTG-------C--------------------------------------------------------------TGACCCTAATTAAC-----------------------------------------------------------------------TTAGCCCGCAGCTCATGTCAT-------TCGGAAA-GCGC-----ACTCATCCC----CA-C------TTGC------------------ACTCGTA---CCC---A--CT--TTCAT--------------------------G--TCCACGCCCACTA-GCCCTAGCACTCATCAGAA------TTAGCTT-CAACATCG--------------ATTGTGCGTC------------------TCTTCAATT---AAC--TGGTCTGGTC-TCGTT-T-----GGTCTCT--ATTCC----A--------TAACC------------------------ACCCAC--------------------TCACCC-CT--CGCCATGTAGAAAGCA---AGATCATCAAGCCA---ACGGACTTTCGCACTCTTTAAGCTCTCTGGSizeHit CountTotal NormTotal
No Reads
droBia1
CTGTACGAGAAGAACTCGCAGCGACTGAAGCTGCCG---------------CCCAGGCAGAGGAAGTAAGC--CC-AT-CACCACCATGCAC-----------ATGCACTGCGACACTGAGCCA---------C----------A--C----A-----------------CCCACATC-----TTTG-------C--------------------------------------------------------------TGACCCTAATTAAC-----------------------------------------------------------------------TTAGCCCGCAGCTCATGACAT-------TCGGAAA-ACGC-----ACTCATCCC----CA-C------TCGC------------------ACTCGTA---CCC---A--CT--CTCAT--------------------------G--TCCACGCCCACTA-GCCCTTGCACCCATCAGAA------TCAGCTT-TAGAATCG--------------GTTGTGCGTC------------------TCTTCAATT---AAC--TGGTCTGGTC-TCGTT-T-----GGTCTCT--CTTCC----A--------TAACC------------------------ACCTAC--------------------TCACCC-CT--CACCAAGTAGAAAGCC---AGATCATCAAGCCA---ACGGACTTTCGCACTCTTTAAGCTCGCTGGSizeHit CountTotal NormTotal
No Reads
droTak1
CTGTACGAGAAGAACTCGCAGCGACTGAAGCTGCCG---------------CCCAGGCAGAGGAAGTAAGC--CC-AT-CAACTCC-----------------ATGCACTACGACACTGCGACA---------C----------A--C----A-----------------CCCACATC-----TTTG-------C--------------------------------------------------------------TGACCCTAATTAAC-----------------------------------------------------------------------TTAGCCCGCAGCTCATGTCAT-------TCGGAAA-GCGC-----ACTCATCCC----CA-C------TCGC------------------ACTCGTC---CCC---A--CT--CTCAT--------CCAA--------------G--TCCACGCCCACTA-GCCCTAGCACTCATCAGAATCAGAATCAGCTT-CAGAATCG--------------GTTGTGCGTC------------------TCTTCAATT---AAC--TGGTCTGGTC-TCGTT-T-----GGTCTCT--CTTCC----A--------TAACC------------------------ACCTAC--------------------TCACCC-CT--CGCCAAGTAGAAAGCC---AGATCATCAAGCCA---ACGGACTTTCGCACTCTTTAAGCTCGCTGGSizeHit CountTotal NormTotal
No Reads
droEle1
CTGTTCGAGAAGAACTCGCAGCGCCAGAAGCTGCCG---------------CCAAGACAGAGGAAGTAAGC--CC-AG-CCACTC------------------------TGCGACACTGAGAAA---------C----------A--C----A-----------------CCCACATC-----TTTG-------C--------------------------------------------------------------TGACCCTAATTAAC-----------------------------------------------------------------------TTAGCCCGCAGCTCATATCAT-------TCGGAAA-GCGC-----ACTCATCCC-AACCA-C------TCGC------------------ACTCGAACAACCC---A--CC--CTCAT--------------------------G--TCCACGCCCACTA-GCCCTAGCACTCATCAGAA------TCAGCTT-CGGAATCG--------AATTCGGTTGTGCGTC------------------TCTTCAACT---AAC--TGGTCTGGTC-TCGTT-T-----GGTCTCT--CTTTC----A--------TAACCACCACCACCA---------CCACCACCCAC--------------------TCACTT-CT--CGTCAAGTAGAAAGCAACAAGATCACCAAGTCAACAACGGACTTTCGCACTCTTTAAGCTCGCTGGSizeHit CountTotal NormTotal
No Reads
droRho1
CTGTACGAGAAGAACTCTCAGCGCCAGAAGCTGCCG---------------CCCAGGCAGAGGAAGTAAGC--CC-AG-CAACACC-----------------ATGCTCTGCAATACTGAGACA---------C----------A--C----A-----------------CCCACATC-----TTTG-------C--------------------------------------------------------------TGACCCTAATTAAC-----------------------------------------------------------------------TTAGCCCGCAGCTCATGTCAT-------TCGGAAA-GCGC-----ACTCATCCC----CA-C------TCGC------------------ACTCGTA---CCC---A--CT--CTCAT--------------------------G--TCCACGCCCACTA-GCCCTAGCACTCATCAGAA------TCAACTT-CAGAATCG--------------GTTGTGCGTC------------------TCTTCAATT---AAC--TGGTCTGGTC-TCGTT-T-----GGTCTCT--TTTCC----A--------TAACC------------------------ACCCAC--------------------TCACCC-CT--CGCCATGTAGAAAGCA---AGATCACCAAGCCA---ACGGACTTTCGCACTCTTTAAGCTCGCTGGSizeHit CountTotal NormTotal
No Reads
droFic1
CTGTATGAGAAGAACTCGCAGCGCCAGAAGCTGCCG---------------CCAAGGCAGAGGAAGTAAGC--CC-AG-CACGACC-----------------ATGCACTGCGACACTGAGACA---------C----------A--C----AT----------------CCCACATC-----TTTG-------C--------------------------------------------------------------TGACCCTAATTAAC-----------------------------------------------------------------------TTAGCCCGCAGCTCATGTCAT-------TCGGAAAAGCGC-----ACTCATCCC----CA-C------TCGC------------------ACCCGTA---CCCACCA--CT--TTCAT--------------------------G--TCCACGCCCACTA-GCCCTAGCACTCATCAGAAACAGAATCAGCTT-CAGAATCG--------------GTTGTGCGTC------------------TCTTCAATT---AAC--TGGTCTGGTC-TCGTT-T-----GGTCTCT--CTTCC----A--------TAACC------------------------ACCCAC--------------------TCACCC-CT--CGCCAAGTAGAAAGCA---AGATCATCAAGCCA---ACGGACTTTCGCACTCTTTAAGCTCGCTGGSizeHit CountTotal NormTotal
No Reads
droKik1
CTGTATGAGAAGAACTCGCAGCGCCAGAAGCAACCG------------TCGGCCAGGCAGAGGAAGTAAGCAACC-AG-CAGCACCATA--------------ATGCACTGAGAC--------A---------CGC----CCACA--C----A-----------------CCCACATGCACT-ACTG-------C--------------------------------------------------------------TGACCCTAATTAAC-----------------------------------------------------------------------TTAGCCCGCAGCTCATATCATTGTCATGTCGGAGA-GCGC-----ACTCATCCC----CA-C------TCGC------------------ACTTGAA---CC----A--TTCACTCAT--GTC---CCAAGTCCA----A----G--CCCTCGCCCACTAAGCCC--ACACACAT-------------------CAGACTCG--------------GTTGCGCGT-------------------TCTTCAATT---AACTCTGGTCTGGATATCGTT-T-----GATCTCT-TCTTCC----A--------TAACAACCACCC--------------GCCACTCAC--------------------TCAATC-CTC-CGCCAAATAGAAAGCA---AGAT---CAAGTCA---ACGGACTCTCGCACTCTTTAAGCTCGCTGGSizeHit CountTotal NormTotal
No Reads
droAna3
CTCTATGAGAAGAACTCCCAGCGGCAGAAGCTGCCA---------------GCCCGGCAGAGGAAGTAAGC--CC-AG-AGAATC-ATATAAATG----TACCATGCACTGAGAC--------A---------CGC----C----CAC----A-----------------CCCGCATCTTCT-TTTG-------C--------------------------------------------------------------TGACCCCAATTAAC-----------------------------------------------------------------------TCGGCCCACAGATCATGTCAT-------TCGGAAA-GCAC-----ACTCATCCC-T---T-C------T---CTCCCACTCGCCCTCCGCACTTATA---CCC---A--TT--CTCAT--------------------------G--TCCACGCCCACTA-GCCCTAGCACTCATAAGAA------T-AGACT-CGGAATCG--------------GTTGCGCGGT------------------TCTTCAATT---AAC--TGGTCTGGTA-CCGTT-T-----GGTCTCTTTCTTCC----A--------TAACC------------------------ACCCAC--------------------TCACTCACTCGCGTCACGTAGAAAGCA---AGAT---CAAGCCA---ATGGACTTTCGCACTCTTTAAGCTCGCTGGSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
...TATGAGAAGAACTCCCAGCGGCAGAAGC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.001010000
......................................................................................................................................................................................................................................................................................................................................................................GTCAT-------TCGGAAA-GCAC-----ACT...........................................................................................................................................................................................................................................................................................................................................................................................................1911.001001000
droBip1
CTCTATGAGAAGAACTCCCAGCGCCAGAAGCTGCCG---------------GCCCGGCAGAGGAAGTAAGC--TC-AG-AGAATC-ATACACATG----AACCATGCACTGAGAC--------A---------CGC----C----CAC----A-----------------CCCGCATC---T-TTTG-------C--------------------------------------------------------------TGACCCCAATTAAC-----------------------------------------------------------------------TCAGCCCACAGCTCATGTCAT-------TTGGAAA-GCAC-----ACTCATCCC-T---T-C------T---CTCCCACTCGCCCTTCGCACTTATA---CCC---A--CT--CTCAT--------------------------G--TCCACGCCCACTT-GCCCTAGCACTCATAAGAA------T-AGATT-CAGAATCG--------------GTTGCGCGGC------------------TCTTCAATT---AAC--TGGTCTGGTA-CCGTT-T-----GGTCTCT--CTTCC----A--------TAACC------------------------ACCCAC--------------------TCACTCACTCGCGTCTCGTAGAAAGCA---AGAT---CAAGCCA---ATGGACTTTCGCACTCTTTAAGCTCGCTGGSizeHit CountTotal NormTotal
No Reads
dp5
TTGTTTGAAAAGAACTCGCAGCGCCAGAAGCTGTCCAAGCTGCGCGATTCGGCGAGGCAGAGGAAGTAAGC--CCCAG-CACCA--------GTGCCCTAACCATGTCTTGGGGC--------A---------CGCACGCCCA----TAC--------------CAACCAA-CACAT--TCTCACTGCTGTTTGTCG------------------------------TTCTCACTCGTAATGTGTCTGTTAATGTCGTGACCTTAATTAACCC--------------------------------------------------------------------CTTGCTCTGCAGCTCATGTCAT-------TCGGAAA-ACGCACTGCACTCATCCC-AAC-T-C------TTGC------------------ACCCAC----------A--CA--CTCAC--------------------------G--CCCACGCCCACTA-CC----------------------ATCATCGT-CAGAATCG--------------ATTGCTCCAC--------------ACACTCTTCAATT---AAC--CGGTCTGGTC-TTAA--T-----GGTCTTT--CTTCC----A--------TAACC-CCATTCGCC----------------------------------------CCACCG-CT--CC-CCTATAGAAACCA---AGAT---CAAGCCA---ACGGACTTTCGCACTCTTTAAGCTCGCTGGSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
................................................................................................................................................................................................................................................................................................................................................................................................TGCACTCATCCC-AAC-T-C------TTGC------------------ACCC.............................................................................................................................................................................................................................................................................................................................................................2511.0010010000000
.............................GCTGTCCAAGCTGCGCGATTCGGC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000100000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T---AAC--CGGTCTGGTC-TTAA--T-----GGTCT..........................................................................................................................................................2411.0010100000000
..................CAGCGCCAGAAGCTGTCCAA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010100000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CA---ACGGACTTTCGCACTCTTT...........2111.0010100000000
droPer2
TTGTTTGAAAAGAACTCGCAGCGCCAGAAGCTGTCCAAGCTGCGCGATTCGGCGAGGCAGAGGAAGTAAGC--CCCAG-CACCA--------GTGCCCTAACCATGTCTTGTGGC--------A---------CGCACGCCCA----TAC--------------CAACCAA-CACAT--TCTCACTGCTGTTTGTCG------------------------------TTCTCACTCGTAATGTGTCTTTTAATGTCGTGACCTTAATTAACCC--------------------------------------------------------------------CTTGCTCTGCAGCTCATGTCAT-------TCGGAAA-ACGCACTGCACTCATCCC-AAC-T-C------TTGC------------------ACCCAC----------A--CA--CTCAC--------------------------G--CCCACGCCCACTA-CC----------------------ATCATCGT-CAGAATCG--------------ATTGCTCCAC--------------ACACTCTTCAATT---AAC--CGGTCTGGTC-TTAA--T-----GGTCTTT--CTTCC----A--------TAACC-CCATTCGCC----------------------------------------CCACCG-CT--CC-CCTATAGAAACCA---AGAT---CAAGCCA---ACGGACTTTCGCACTCTTTAAGCTCGCTGGSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
....TTGAAAAGAACTCGCAGCGCC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2113.003300000
................................GTCCAAGCTGCGCGATTCGGC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2112.002200000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTCGCACTCTTTAAGCTCGCT..2211.001100000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CA---ACGGACTTTCGCACTCTTTAAGCTC.....2711.001100000
......................................GCTGCGCGATTCGGCGAGGC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001010000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTCAATT---AAC--CGGTCTGGTC-TTAA--T-----GGT............................................................................................................................................................2911.001100000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTCGCACTCTTTAAGCTCGCC..2211.001100000
droWil2
TTATTTGAAAAGAATTCGCAACGCAAGAAACTGGTCAAACCAAACGATCTAACCAGGGCGAGGAAGTAAGA--CA-AC-AGAATA--------------------GCCATGTGGC--------A---------C---CGCCTACA--C----ATTATTTATGTACAACCAA-CATGC--TCTCACCAC---TTGTTG------------------------------TTATTA--------------------ATTGTGACCTCAATTAACCAA---CTACC---------------------------AATCAGC--------------------------TCAGCT--CAGCTCATGTTAT-------ATGGAAA-CTGC-----ACTCATCCC----CAAT------TTGC------------------ACCCACA---TTC---AAACA--CACAT--------------------------G--CACACACACAC---GCAC---------------------------------ATTGGTTTGGCTCATTCAGTCACATTCT------------------TCATCAATTTCTAAT-CGGGTCTGGTC-TAATTCT-----AATTTCT--CTTTC----A--------TAACC------------------------ATTCAC--------------------TCAATACCACGAAACCCATAGAAAGCA---AGAT---CAAGCAA---ACGGACTTTCGCACTCTTTAAGCTCGCTGGSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
...........................................................................................................................................................................................................................................................................................................................................................................................TGC-----ACTCATCCC----CAAT------TTGC------------------ACCCACA---.......................................................................................................................................................................................................................................................................................................................................................2711.00101000
.....TGAAAAGAATTCGCAACGCAAGAAAC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.00101000
.....................................AACCAAACGATCTAACCAGGGC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.00100010
...........................AAACTGGTCAAACCAAACGATC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.00100010
droVir3
CTCTATGAAAAGAACATACAGCGGCCGAATCAAGCCAAGCTAAGCGATCAATCGAAGCTGAGGAAGTAAGC--CA-ACGC-ACTA------------------------ACTGACTATGTGACA---------C----------G--C----CC----------------CCCATGTT-----ACTG-------TTGT---------------------------TGTTCTA---------------------ATTGTGAACTCAATTAACCATCAAACGCAAGCGGCATTAATTTGTATGTGTGCTCAGATCAGATCAGCTCAGCTCCAGATCCAGAACTC--------ATGCTCATGGC---------TCGGAAT-ACAT--AGAACTCATACCGAAC-T-CACGCACCCGC------------------ACTCGCACA-CCCACCA--TT--CACACACTCACACACAAGCACACACAAGCACA--CACACGCACGCAC-GCACTAGCACACATCAG-------------TT-CAGAATTG--------------GTTGGTAATTTCATTTTTTATCGAAGCGCCTTCATAT---AAC--GGTTTTGGTT-TTCTT-T-TTTTTATCTCT--CTTCC----A----------ACT-----------ACTTTCAACTACCACCCCGCCTCAAAAAAAAAACTCCCCTAACTT-AA--CC-ACAGTAGAAAGCA---AGACCATCCACCAA---ATGGACTTTCGCACTCTTTAAGCTCTTTGGSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGGTAATTTCATTTTT.................................................................................................................................................................................................................1814.004000000000000000000000000101000000011000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A---AGACCATCCACCAA---ATGGA.........................2011.001000000000000001000000000000000000000000000000000000000000000000
..CTATGAAAAGAACATACAGCGGCC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.001000100000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................ATTAACCATCAAACGCAAGCGGCA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.001000000000000000000000000000000000000100000000000000000000000000
...........................AATCAAGCCAAGCTAAGCGATC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001000100000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGACCATCCACCAA---ATGGACTTT.....................2311.001001000000000000000000000000000000000000000000000000000000000000
droMoj3
CTCTACGAGAAGAATGTACAGCGGCCGAAGCAGGCCAAGCTTAGCGATCCATCCAAGCAGAGGAAGTAAGC--CA-ACGC-ACGCA-----------CT----AACCACTGAACCACTGAAATACATGTGACACGC----C----CACATGCA-----------------CCCAAGTA-----ACTT-------CTCTCTCATATGCGCCCACATTAAATACACATGTTATAA--------------------TTTGTGAGATCAATTAACGAA---ATGCA---GGCATTAATTTGTATGTGAACTCCGATC----------GGCTCCAGAA-TAGAATTCATGCTCATCATCCTATGTCAC-------TCGCA-C-GCAC-----ACTCACGCA----CG-C------ACGC------------------ACGC--A---CAC---A--C-------------------------------------------------------TCACACACA---------------GCGTACTCAATTG--------------GTTGGTAGTTCTTTTAATTGCCACAGCGCCTTCATAT---AAC--GGGTCTGGTC-TTCTC-TCTCTTTATCTCT--TTCTCTCTCTCTCCCACATAACA-CTA---------------CTACCACCCTC--TCAAAAAACAAACTG---TAACTA-CT--TG-ACTGTAGCAAGCA---AGTTCCTCCACCAA---ATGGACTTTCGCACTCTTTAAGCTCGTTGGSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
................................GGCCAAGCTTAGCGATCCATCCAAGCAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.001100000
droGri2
C-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GC-----ATTCATACA----CA-A------CACA-----ACTTGC-------A---------CCC----------TGCAC--------------------------GACTCCACACTCACAT-GC---AGCACTCATCG--------------AT-CGGAAATG--------------GTTGGTTGGTTCGT------ACGAAGCGCCTTCATAA---AAC--GGGTTCGGTCATTATT-T-----GATCTCT--TTCTC----TCTTCCACATAACC-TAATCCAACTAACTGCAACTGC----------------------------AACTA-CG--AA-TCTGTAGCAAGCA---AGAC---CAAACCA---ATGGACTTTCGCACTCTTTAAGCTCACTGGSizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads

Generated: 05/18/2015 at 11:09 AM