ID:

dsi_12987

 Coordinate:

3r:26847361-26847565 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-2.0 -1.7

Flybase annnotation

intergenic

No Repeatable elements found

Sense Strand Reads

CTAGTAATTAAAAATAGCACTATTCAGTATTCGATATTTTTCCTTTATATGTAAGTATTCGTTGAAATATGCATTCAGAATACATTCATTCATACATGAAATTCAAAGTAAAAGGCGACATGGAAGCCCCATTTAAGCGGTTTTAAACTCAAAAAAGTTGAATACTTCAGCAATGCACTCAATTTTCCGTTTAGGAATTTTAAGAACAAGTATTTTTCTATCCTTAAAATCCCGTAACAAAAACAAAAACTCAAGAACGCGGCTGGCTGCCCAGTGTGACCACTTGACGATTTCCCACAATTCAC
***************************************************************..............((((...(((((......)))))))))......*************************************************************************************************************************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR902009
testis
 SRR618934
dsim w501 ovaries
 O001
Testis
 SRR553488
RT_0-2 hours eggs
 M024
male body		 M025
embryo
 SRR553486
Makindu_3 day-old ovaries
 SRR553487
NRT_0-2 hours eggs
 SRR553485
Chicharo_3 day-old ovaries
 M023
head
 M053
female body
 O002
Head
 GSM343915
embryo
................................................................................................................................................................................................TGGAATTTTAAGAACAAGTAT............................................................................................ 21 1 1 3.00 3 3 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................................................................TGAAGAACGCAGCTAGCTGC................................... 20 3 6 2.00 12 0 0 0 7 0 0 0 5 0 0 0 0 0
...............................................................GAAATATGCATTCAGAATACA............................................................................................................................................................................................................................. 21 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................................................................AACAAAAACAAAAACTCAAGAACGCGGC.......................................... 28 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................................................................CTCAAGAACGCGGCTGGCTGT................................... 21 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................CATACATGAAATTCAAAGTA................................................................................................................................................................................................... 20 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0
.........................................................................................................................................................................................................................................................CTCAAGAACGCGGCTGGCTGC................................... 21 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0
............AATAGCACTATTCAGTATTCG................................................................................................................................................................................................................................................................................ 21 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0
..................................................................................................................GCGACATGGAAGCCCCA.............................................................................................................................................................................. 17 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0
.........................................................TTCGTTGAAATATGCATTCAG................................................................................................................................................................................................................................... 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0
..................................................GTAAGTATTCGTTGAAATATG.......................................................................................................................................................................................................................................... 21 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0
................................GATATTTTTCCTTTATATGTA............................................................................................................................................................................................................................................................ 21 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 1 0 0
.............................................................................................................AAAAGGCGACATGGAAGCCCC............................................................................................................................................................................... 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................................AATACTTCAGCAATGCACTCA............................................................................................................................ 21 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0
................................................ATGTAGGTATTCGTTGAAATA............................................................................................................................................................................................................................................ 21 1 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0
.................................................................................................................................CATTTAAGCGGTTTTAAACTC........................................................................................................................................................... 21 0 1 1.00 1 0 0 0 0 0 0 0 0 0 1 0 0 0
....................................................................................................................................................................................................................................................AAAAACTCAAGAGCGCGGCTG........................................ 21 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................................................................AACAAAAACTCAAGAACGCGGCTGGC...................................... 26 0 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0 0 0
.........................................................................................................AAGTAAAAGGCGACATGGAAG................................................................................................................................................................................... 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................................................................AAGAACGCGGCTGGCTGCCCA................................ 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................ATTCAAAGTGGAGGGCGACATG....................................................................................................................................................................................... 22 3 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................................................TAAGAACAAGTATTTTCCT...................................................................................... 19 1 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 1
........................................................................................................AAAGTAAAAGGCGACATGGAA.................................................................................................................................................................................... 21 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0
....................................................AAGTATTCGTTGAAATATG.......................................................................................................................................................................................................................................... 19 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0
..........................................................................................................................................................................CAATGCACTCAATTTTCCGTT.................................................................................................................. 21 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 1 0
.....................................................................................................................................................................................................................................................AAAACTCAAGAACGCGGCTG........................................ 20 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................................................................CAAAAACTCAAGAACGCGGCT......................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................................................................AAGAACGCAGCTAGCTGC................................... 18 2 4 0.50 2 0 0 0 1 0 0 0 1 0 0 0 0 0
..........................................................................................................................................................AAGTTGAACAATTCAGCAATGG................................................................................................................................. 22 3 3 0.33 1 0 0 0 0 0 0 0 1 0 0 0 0 0
.......................................................................................................................AAGGAGGCCCCATGTAAGCG...................................................................................................................................................................... 20 3 6 0.17 1 0 0 0 1 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................AAGAAGAAGTATTTTT........................................................................................ 16 1 17 0.06 1 0 0 0 0 0 0 0 0 1 0 0 0 0
...............................................................................................................................................................................................TAGGGATTTTAAGAA................................................................................................... 15 1 20 0.05 1 0 0 0 1 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................CAGCAATGCATTCAGTT......................................................................................................................... 17 2 20 0.05 1 0 0 0 0 0 0 0 1 0 0 0 0 0

Anti-sense strand reads

GATCATTAATTTTTATCGTGATAAGTCATAAGCTATAAAAAGGAAATATACATTCATAAGCAACTTTATACGTAAGTCTTATGTAAGTAAGTATGTACTTTAAGTTTCATTTTCCGCTGTACCTTCGGGGTAAATTCGCCAAAATTTGAGTTTTTTCAACTTATGAAGTCGTTACGTGAGTTAAAAGGCAAATCCTTAAAATTCTTGTTCATAAAAAGATAGGAATTTTAGGGCATTGTTTTTGTTTTTGAGTTCTTGCGCCGACCGACGGGTCACACTGGTGAACTGCTAAAGGGTGTTAAGTG
***************************************************************************************************************************************************************************************************..............((((...(((((......)))))))))......*************************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR618934
dsim w501 ovaries
 M023
head
 M025
embryo
 SRR553486
Makindu_3 day-old ovaries
 SRR553485
Chicharo_3 day-old ovaries
 SRR902009
testis
 M053
female body
 SRR902008
ovaries
 SRR553488
RT_0-2 hours eggs
 SRR553487
NRT_0-2 hours eggs
 M024
male body		 GSM343915
embryo
.....................................................................ACGTAAGTCTTATGTAAGTAA....................................................................................................................................................................................................................... 21 0 1 4.00 4 0 4 0 0 0 0 0 0 0 0 0 0
...............TCGTGGTAAGTCATAAGCTAT............................................................................................................................................................................................................................................................................. 21 1 1 3.00 3 0 0 2 0 1 0 0 0 0 0 0 0
........................................................................................................................................................................TCGTTACGTGAGTTAAAAGGCA................................................................................................................... 22 0 1 3.00 3 0 2 0 1 0 0 0 0 0 0 0 0
...........................................................................................................................................................................TTACGTGAGTTAAAAGGCGAA................................................................................................................. 21 1 1 3.00 3 0 0 0 0 0 1 0 2 0 0 0 0
....................................................................TACGTAAGTCTTATGTAAGTA........................................................................................................................................................................................................................ 21 0 1 2.00 2 1 0 0 0 0 0 0 0 0 0 1 0
...........................................................................................................................................................................................................................TAGGAATTTTAGGGCATTGTT................................................................. 21 0 1 2.00 2 0 0 0 1 1 0 0 0 0 0 0 0
.....................................................................................................AAGTTTCATTTTCCGCTGTAC....................................................................................................................................................................................... 21 0 1 2.00 2 0 0 0 1 1 0 0 0 0 0 0 0
...............CCGTGGTAAGTCATAAGCTAT............................................................................................................................................................................................................................................................................. 21 2 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................................TGGAATTTTAGGGCAGTGTT................................................................. 20 2 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0
..........................................................................................................................................................................GTTACGTGAGTTAAAAGGC.................................................................................................................... 19 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0
.................................................................................................................................................................TATGAAGTCGTTACGTGAGTT........................................................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................GAAGTCGTTACGTGAGTTAAA........................................................................................................................ 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................................................................................................TGAGTTCTTGCGCCGACCGAC.................................... 21 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0
..........................................................................................................................................................TTCAACTTGTGAAGTCGTTGC.................................................................................................................................. 21 2 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0
..............ATCGTGATAAGTCATTAGCTA.............................................................................................................................................................................................................................................................................. 21 1 1 1.00 1 0 0 0 0 0 0 0 0 0 1 0 0
..................................................................................................................CGCTGTACCTTCGGGGTAAAT.......................................................................................................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................CGTTACGTGAGTTAAAAGGCA................................................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................................................AATTTTAGGGCAGTGTTTTTGT............................................................ 22 1 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0
........................................................................................................................................................................TCGTTACGTGAGTTAAAAGGC.................................................................................................................... 21 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0
...................................................................ATACGTAAGTCTTATGTAAGT......................................................................................................................................................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................TTAAGTTTCATTTTCCGCTGT......................................................................................................................................................................................... 21 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0
...........................................................................................................................................................................TTACGTGAGTTAAAAGGCAAA................................................................................................................. 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
.......................................................ATAAGCAACTTTATACGTA....................................................................................................................................................................................................................................... 19 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 1
..............................................................................................................TTTCCGCTGTACCTTCGGGGTAAATTC........................................................................................................................................................................ 27 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
.........................................................................................................................................GCCAAAATTTGAGTTTTTTC.................................................................................................................................................... 20 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0
................CGTGATAAGTCATAAGCTATA............................................................................................................................................................................................................................................................................ 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................................CTTGTTCATAAAAAGATAG................................................................................... 19 0 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0 0
.....................................................................ACGTAAGTCTTATGTAAGTGA....................................................................................................................................................................................................................... 21 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
....................ATAAGTCATACGCTAT............................................................................................................................................................................................................................................................................. 16 1 5 0.40 2 0 0 0 0 0 0 0 0 2 0 0 0
....................................................................................................................................................................................................................................TAGGGCGTTGTTTTTGT............................................................ 17 1 6 0.33 2 0 0 0 2 0 0 0 0 0 0 0 0
........................................................................................................................................................................TCGTTATGTGAGTTAA......................................................................................................................... 16 1 4 0.25 1 0 0 0 1 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................................ATAACAAGATGGGAATTTGA........................................................................... 20 3 9 0.11 1 0 0 0 0 0 0 0 0 0 1 0 0
.....................................................................................................AAGTTTCATTTTCAG............................................................................................................................................................................................. 15 1 20 0.10 2 0 0 0 0 0 0 0 0 1 1 0 0
............................................................................................................................................AAAATTTGAGTTGTT...................................................................................................................................................... 15 1 20 0.10 2 0 0 0 0 0 0 0 0 2 0 0 0
...........................................................................................................................................CAAAATTTGAGTTTTTTCGG.................................................................................................................................................. 20 2 11 0.09 1 0 0 0 0 0 0 1 0 0 0 0 0
................................................................................................................................................................................................................TCAGAAAAAGATAGGCA................................................................................ 17 2 13 0.08 1 0 0 0 1 0 0 0 0 0 0 0 0
.................GTGATCAGGCATAAGATAT............................................................................................................................................................................................................................................................................. 19 3 13 0.08 1 0 0 0 0 0 0 0 0 0 1 0 0
.....................TAAGTCATACGCTAT............................................................................................................................................................................................................................................................................. 15 1 14 0.07 1 0 0 0 0 0 0 0 0 1 0 0 0
....................ATAAGTCATACGCTA.............................................................................................................................................................................................................................................................................. 15 1 20 0.05 1 0 0 0 0 0 0 0 0 1 0 0 0
................................................................................ATGTAAGTAAGTAGG.................................................................................................................................................................................................................. 15 1 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................................GAAAAGATAGGAATT.............................................................................. 15 1 20 0.05 1 0 0 0 1 0 0 0 0 0 0 0 0
....................................AAAAACGAAATGTACATT........................................................................................................................................................................................................................................................... 18 2 20 0.05 1 0 0 0 0 0 0 0 0 1 0 0 0
....................................................................................................................................................................................................................................................................................ACTGGTGATCTGCTAC............. 16 2 20 0.05 1 0 0 0 0 0 0 0 0 0 1 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim2 3r:26847311-26847615 - dsi_12987 CTAGTAA-TTAAAAATA---G---CACTATTCAGTATTCGA---------------TATTTTTCCTTTATATGTAAGTATTCGTT----------------------------------------------------------GAA----------------------ATATGCATTCAGA--------ATACATTCATTCATACATGAAATTCAAAGTAAAAGGCGACATGGAAGCCCCATTTAAGCGG---------------TTTTAAACTCAAAAAAGT---------------------------------T--GAATACTT-CAGCAATGCACTCAA------------TTTTCCGTTTAGGAATTTTAAGAACAAGT--------------A-----------T--------------------TTTTCTATCCT-TAAAATCCCGTAA------------------------------CAAAA--ACAAAAACTCAAGAACGCGGCTGGCTGC-CCAGTGTGACCACTTGACGATTTCCCACA-ATTCAC
droSec2 scaffold_31:226306-226605 - GTAGTAA-TTAAAAATA---G---CACTATTCAGTATTCCA---------------TATTTTTCCTTTA-----AATTATTCGTT----------------------------------------------------------GAA----------------------ATATGCATTCAGA--------ATACATTCATTCATACATGAAATTCAAAGTAAAAGGCGACATGGTAGCCCCATTTAAGCGG---------------TTTTAAATTCAAAAAAGT---------------------------------T--GAATACTT-CAGCAATGCACTCAA------------TTTTCCGTTTAGGAATTTTAAGAACAAGT--------------A-----------T--------------------TTTTCTATCCT-TAAAATCCCGTAA------------------------------CAAAA--ACAAAAACTCAAGAACGCGGCTGGCTGC-CCAGTGTGACCACTTGACGATTTCCCACA-ATTCAC
dm3 chr3R:27571723-27572012 - CTAGTAA-TTAAAAATA---A---TACTATTGAGTTTTCGT---------------TATTTTTGCTTTA-----AATTATTCGAT----------------------------------------------------------GAA----------------------A--TGCATTCAGA--------ATACATTC---------TGAAATTCAAAGTACAAGGCGACATGGCAGCCCCATTTGAGCGG---------------TTATAAACTGAAAAAAATA--------------------------------T--GAATACTT-TAGCAATGCACTCAA------------ATTTCCGCTTTGGAATTTAAATAACAAGT--------------A-----------T--------------------TTTCCTATCCT-TTAAATCGCCCAA------------------------------CAAAA--ACAAAAACTCAAGAACGCGGCTGGCTGC-CCAGTGTGACCACTTGACGATTTCCCACA-ATTCAC
droEre2 scaffold_4820:403703-404026 + CTGGCAA-TTAAA--------CTA-----CC---TG-----TTTTATC-------------------------------------------------AATTGAAAGAGTTTGTATTATTGTAGCCTTA-----------------------------------------------------AAATATTCATACATTC---------TGAAATTCAAAAAAGGAAGAGACATGGCAACCCTACTAATGCGG---------------TTATAA-TTGAATAAAATAATAATGAATAAAAAAAAATAATGAATAAAATATAGTAATACTT-CAGCAATGCAATCAA------------CTTTCCGCCTTGCAATT-TAAGAATAAGTTGATCTAAAATTAAT-----------T--------------------TTTTCGAT-CA-TAAAATCCCCAAA------------------------------A-AGT--AAGAAAACTGAAGAACGCGGC----TGA-CTAGTGTGACCACTTGACGATTACCCACAAATTCAC
droYak3 3R:28506391-28506618 - TTGGCAA-TTTGAAGTTAAA-CTA-----CC---TA-----TTTCATC-------------------------------------------------A-TTAATTGAGTTTATATTATTGTAGCCTTA-----------------------------------------------------AAATATTTG----------------------------CACAAG-----ACGACAGTCCCACTAAAACAG---------------TTATAAATAAAAAA-TATA--------------------------------T--A-------------------------------------------------AATTAAAGAATTAGTTGATCTAAAAT----------------------------------------TGATTCT-AAAAATCCCCGGA--------------------------------AAA--ATGAAAGCTTTAGAACGCGGC----TGC-TCAGTGTGACCACTTAACGATTGCCCACAAATTCAC
droEug1 scf7180000409488:332923-333201 + CAATTGGGATAAA--------TTA-----AA---TA-----TTCTATAGATTGAGATTTAGTT------------------C-------------------------------AATGTAT-------------------------------------------------------------AAATATTTAAATTAAC---------TGAGAGTTAGAA---CAAGCAAAGTGGCAACTCTACTAAAACGG---------------AACTAA-TT------------------------------------------T--AAATATTT-CGGC--TGCATTCGAGTAATTTTTTCAAGCTTCGTTTAAGAAATTGAACATTTT-------------------ATTAAA--TTTTTTCCCACGATCAATAAAATTTACGGC-ATAAAAAATCCC---------------------------------------------------TAAAATAAAAATTACCGCCACAGTGTGACCACTTGGCGATACCCCGCAAATTCTT
droBia1 scf7180000302035:235950-236285 - TTTA--A-T---GGCTA---C---CTTTGTTTAATTTTTCA---------------AATGGTT------------------------------------------------ACAATCTGGAAGTCTTCCAATAGCCGG-----GAA----------------------G--TGCGATCCTA--------GAAAATCT---------GTAAGTTCAAACTATAAAGCGACGTGGCAACGCTCTGAGTA-GGATATACTATGTACGATAAAAGTTCCAAAAACCT---------------------------------T--GGTCAGTTTCAA-ACAAATCTTAA------------TTTTCCAA-TGGAAAGTTAGCCGGCAATT--------------AAAGGGGGATTTCTTCGCCCAGTATCCGCAAGTCTTACCCACCCGAAAAATCCCCTAA------------------------------ATCCG--TGAAAAACTCACAAAAGCGGC----GCC-CTAGTGTGACCACTTGGCGATACCCCTTAAATTCAC
droTak1 scf7180000415712:659082-659246 - CTAATAA-TTAGTACCCTAT-ACT--------------------------------------CGATTTA-----AATTGGTCTTTTAAGAATCAATAATTTGAGAGAACTTGGTGCATTCAAA---------------------------------------------GTTTGAATTT------------------------------------------------------------------------------------------------------------------------------------------------------CAA-ATACATTTT------------------------------------------------------------------------------------------------------AACGATTTTTACAATATAAAAAGTAACCGTGATTTGAAATCCA-----------------------------------------------ATTCGGTAAATGGTTTTAAATT---
droEle1 scf7180000491194:1617161-1617274 - GAA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTTTACAACGATCGAAAAGACTTACTGCCCTTAAAAATTCCCAAA------------------------------AATCG--AGGAAAACTCATAAAAGCGGT----GCA-GCAGTGTGACCGCTTGCCAGTTCGCCAGAAATTCAC
droRho1 scf7180000779322:123487-123844 + TTAGAAA-TTCAAAAACGAA-ACTCAATAAACAACATACAATTTTATAGCTTCTGATTTATTT-------------------GCA--------------------------ACAATGATGTAGCCG--------CCATGATTTAAACTAAATATTTACCACGATCTTA-------------AAATACC--------C---------AAAAAGTTTGACAAACCAGCGACGTGGCAACGCTACGAAAGTGG---------------ATACAAATT------------------------------------------T--AAATATCT-CAGCGATTCCC--GGGGACTTGATCCAAGTTTCAAATGGAAAGTTAAGGAATAAAT--------------AATATAAGA--ATTTTGACCAAGATCGAAAAGACTTACTGCCCTTAAAAATCGCAAGT-----------------------------AACCCG--AGAAAAGCTCATAAAAGCGGC----GCT-ACAGTGTGACCACTACGCGATACC-CACAAATTCAC
droFic1 scf7180000454114:258114-258203 - TC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTCTCCCTT-TAAAATCGCCAAC------------------------------AAAAAACCGAAAAACTCATAACGGCGGC----TCA-GCAGTGTGACCACTTGGAGATACGCAACAAATTC-C
droKik1 scf7180000302810:834451-834521 - AAAAGAA-ATAAAGGCCAAA-GCT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TACCTT-GCT-G----TGT-GCAGTGTGACCGTCTGGCGCTGGCGAATTAATTCTG

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
CTAGTAA-TTAAAAATA---G---CACTATTCAGTATTCGA---------------TATTTTTCCTTTATATGTAAGTATTCGTT----------------------------------------------------------GAA----------------------ATATGCATTCAGA--------ATACATTCATTCATACATGAAATTCAAAGTAAAAGGCGACATGGAAGCCCCATTTAAGCGG---------------TTTTAAACTCAAAAAAGT---------------------------------T--GAATACTT-CAGCAATGCACTCAA------------TTTTCCGTTTAGGAATTTTAAGAACAAGT--------------A-----------T--------------------TTTTCTATCCT-TAAAATCCCGTAA------------------------------CAAAA--ACAAAAACTCAAGAACGCGGCTGGCTGC-CCAGTGTGACCACTTGACGATTTCCCACA-ATTCACSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
...............................................................................................................................................GAA----------------------ATATGCATTCAGA--------ATACA............................................................................................................................................................................................................................................................................................................................................................................2111.00100001000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................AA------------------------------CAAAA--ACAAAAACTCAAGAACGCGGC............................................2811.00100000000010000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCAAGAACGCGGCTGGCTGT-....................................2111.00100000000000001000
........................................................................................................................................................................................................CATACATGAAATTCAAAGTA..................................................................................................................................................................................................................................................................................................................................................2011.00100100000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCAAGAACGCGGCTGGCTGC-....................................2111.00100000001000000000
.............AATA---G---CACTATTCAGTATTCG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100001000000000000
................................................................................................................................................................................................................................GCGACATGGAAGCCCCA.............................................................................................................................................................................................................................................................................................................................1711.00100000000001000000
...............................................................................TTCGTT----------------------------------------------------------GAA----------------------ATATGCATTCAG..........................................................................................................................................................................................................................................................................................................................................................................................2111.00100000000001000000
........................................................................GTAAGTATTCGTT----------------------------------------------------------GAA----------------------ATATG.................................................................................................................................................................................................................................................................................................................................................................................................2111.00101000000000000000
.......................................GA---------------TATTTTTCCTTTATATGTA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100010000000000000
...........................................................................................................................................................................................................................AAAAGGCGACATGGAAGCCCC..............................................................................................................................................................................................................................................................................................................................2111.00100000000001000000
................................................................................................................................................................................................................................................................................................................................AATACTT-CAGCAATGCACTCA........................................................................................................................................................................................................................2111.00100001000000000000
...............................................................................................................................................................................................................................................CATTTAAGCGG---------------TTTTAAACTC...........................................................................................................................................................................................................................................................................................2111.00110000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A--ACAAAAACTCAAGAACGCGGCTGGC........................................2611.00100000010000000000
.......................................................................................................................................................................................................................AAGTAAAAGGCGACATGGAAG..................................................................................................................................................................................................................................................................................................................................2111.00100000000001000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGAACGCGGCTGGCTGC-CCA.................................2111.00100000000001000000
......................................................................................................................................................................................................................AAAGTAAAAGGCGACATGGAA...................................................................................................................................................................................................................................................................................................................................2111.00100000001000000000
..........................................................................AAGTATTCGTT----------------------------------------------------------GAA----------------------ATATG.................................................................................................................................................................................................................................................................................................................................................................................................1911.00101000000000000000
...........................................................................................................................................................................................................................................................................................................................................CAATGCACTCAA------------TTTTCCGTT..................................................................................................................................................................................................2111.00100000100000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAACTCAAGAACGCGGCTG..........................................2011.00100000000000001000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAAAACTCAAGAACGCGGCT...........................................2111.00100000000000001000
droSec2
GTAGTAA-TTAAAAATA---G---CACTATTCAGTATTCCA---------------TATTTTTCCTTTA-----AATTATTCGTT----------------------------------------------------------GAA----------------------ATATGCATTCAGA--------ATACATTCATTCATACATGAAATTCAAAGTAAAAGGCGACATGGTAGCCCCATTTAAGCGG---------------TTTTAAATTCAAAAAAGT---------------------------------T--GAATACTT-CAGCAATGCACTCAA------------TTTTCCGTTTAGGAATTTTAAGAACAAGT--------------A-----------T--------------------TTTTCTATCCT-TAAAATCCCGTAA------------------------------CAAAA--ACAAAAACTCAAGAACGCGGCTGGCTGC-CCAGTGTGACCACTTGACGATTTCCCACA-ATTCACSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
.......................................................................................................................................................................................................................................GGTAGCCCCATTTAAGCGG---------------TT...................................................................................................................................................................................................................................................................................................2111.0011000
.............................................................TTCCTTTA-----AATTATTCGTT----------------------------------------------------------GA.............................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010100
...........................................................................................................................................................................................................................................................................................................................................................................TTAGGAATTTTAAGAACAAGT--------------................................................................................................................................................................2111.0011000
............................................................................................................................................................................................................................................................................................................................................AATGCACTCAA------------TTTTCCGTTT.................................................................................................................................................................................................2111.0010100
....................................................................................................................................................................................................................TCAAAGTAAAAGGCGACATGG.....................................................................................................................................................................................................................................................................................................................................2111.0010010
.............................TTCAGTATTCCA---------------TATTTTTC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0011000
......................................................................................................................................................................................................................AAAGTAAAAGGCGACATGGTA...................................................................................................................................................................................................................................................................................................................................2111.0010100
dm3
CTAGTAA-TTAAAAATA---A---TACTATTGAGTTTTCGT---------------TATTTTTGCTTTA-----AATTATTCGAT----------------------------------------------------------GAA----------------------A--TGCATTCAGA--------ATACATTC---------TGAAATTCAAAGTACAAGGCGACATGGCAGCCCCATTTGAGCGG---------------TTATAAACTGAAAAAAATA--------------------------------T--GAATACTT-TAGCAATGCACTCAA------------ATTTCCGCTTTGGAATTTAAATAACAAGT--------------A-----------T--------------------TTTCCTATCCT-TTAAATCGCCCAA------------------------------CAAAA--ACAAAAACTCAAGAACGCGGCTGGCTGC-CCAGTGTGACCACTTGACGATTTCCCACA-ATTCACSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
...............TA---A---TACTATTGAGTTTTCGT---------------T.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2113.0030000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................TGAAATTCAAAGTACAAGGCG...........................................................................................................................................................................................................................................................................................................................................2113.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................AAAGTACAAGGCGACATGGCA...................................................................................................................................................................................................................................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................ATGGCAGCCCCATTTGAGCGG---------------.....................................................................................................................................................................................................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................ATACATTC---------TGAAATTCAAAGT...................................................................................................................................................................................................................................................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000
..................................................................TTA-----AATTATTCGAT----------------------------------------------------------GAA----------------------A--TGC................................................................................................................................................................................................................................................................................................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000
..............................TGAGTTTTCGT---------------TATTTTTGCT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2112.0020000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000
.............................TTGAGTTTTCGT---------------TATTTTTGC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A--ACAAAAACTCAAGAACGCGG.............................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000100000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................A--------------------------------T--GAATACTT-TAGCAATGC.............................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGGCTGGCTGC-CCAGTGTGA...........................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................T----------------------------------------------------------GAA----------------------A--TGCATTCAGA--------ATACAT...........................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
...................................................................................................................................................................................GA--------ATACATTC---------TGAAATTCAGG.....................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................TGGCAGCCCCATTTGAGCGG---------------TTATAAAC.............................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A--ACAAAAACTCAAGAACGCGGCT...........................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................A-----------T--------------------TTTCCTATCCT-TTAAATCGC..........................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000
.........TAAAAATA---A---TACTATTGAGTTTTCGT---------------......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................ATTCAAAGTACAAGGCGACATGG.....................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................AAATTCAAAGTACAAGGCGAC.........................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGGCTGGCTGC-CCAGTGTGAC..........................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................AT----------------------------------------------------------GAA----------------------A--TGCATTCAGA--------ATACATT..........................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................ATA--------------------------------T--GAATACTT-TAGCAATGC.............................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................CATGGCAGCCCCATTTGAGCGG---------------.....................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................TTCAAAGTACAAGGCGACATG......................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000
....TAA-TTAAAAATA---A---TACTATTGAGTT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................TACATTC---------TGAAATTCAAAGTACAAGG.............................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................TGGCAGCCCCATTTGAGCGG---------------TTA..................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............TA---A---TACTATTGAGTTTTCGT---------------......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................TGAAATTCAAAGTACAAGGCGACATG......................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAACTCAAGAACGCGGCTGGCTGC-CCA.................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................TTGGAATTTAAATAACAA................................................................................................................................................................................1880.1310000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droEre2
CTGGCAA-TTAAA--------CTA-----CC---TG-----TTTTATC-------------------------------------------------AATTGAAAGAGTTTGTATTATTGTAGCCTTA-----------------------------------------------------AAATATTCATACATTC---------TGAAATTCAAAAAAGGAAGAGACATGGCAACCCTACTAATGCGG---------------TTATAA-TTGAATAAAATAATAATGAATAAAAAAAAATAATGAATAAAATATAGTAATACTT-CAGCAATGCAATCAA------------CTTTCCGCCTTGCAATT-TAAGAATAAGTTGATCTAAAATTAAT-----------T--------------------TTTTCGAT-CA-TAAAATCCCCAAA------------------------------A-AGT--AAGAAAACTGAAGAACGCGGC----TGA-CTAGTGTGACCACTTGACGATTACCCACAAATTCACSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
No Reads
droYak3
TTGGCAA-TTTGAAGTTAAA-CTA-----CC---TA-----TTTCATC-------------------------------------------------A-TTAATTGAGTTTATATTATTGTAGCCTTA-----------------------------------------------------AAATATTTG----------------------------CACAAG-----ACGACAGTCCCACTAAAACAG---------------TTATAAATAAAAAA-TATA--------------------------------T--A-------------------------------------------------AATTAAAGAATTAGTTGATCTAAAAT----------------------------------------TGATTCT-AAAAATCCCCGGA--------------------------------AAA--ATGAAAGCTTTAGAACGCGGC----TGC-TCAGTGTGACCACTTAACGATTGCCCACAAATTCACSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
.............................................................................................................................................................................................G----------------------------CACAAG-----ACGACAGTCCCACT...........................................................................................................................................................................................................................................................................................................................2111.00101000000000
droEug1
CAATTGGGATAAA--------TTA-----AA---TA-----TTCTATAGATTGAGATTTAGTT------------------C-------------------------------AATGTAT-------------------------------------------------------------AAATATTTAAATTAAC---------TGAGAGTTAGAA---CAAGCAAAGTGGCAACTCTACTAAAACGG---------------AACTAA-TT------------------------------------------T--AAATATTT-CGGC--TGCATTCGAGTAATTTTTTCAAGCTTCGTTTAAGAAATTGAACATTTT-------------------ATTAAA--TTTTTTCCCACGATCAATAAAATTTACGGC-ATAAAAAATCCC---------------------------------------------------TAAAATAAAAATTACCGCCACAGTGTGACCACTTGGCGATACCCCGCAAATTCTTSizeHit CountTotal NormTotal
No Reads
droBia1
TTTA--A-T---GGCTA---C---CTTTGTTTAATTTTTCA---------------AATGGTT------------------------------------------------ACAATCTGGAAGTCTTCCAATAGCCGG-----GAA----------------------G--TGCGATCCTA--------GAAAATCT---------GTAAGTTCAAACTATAAAGCGACGTGGCAACGCTCTGAGTA-GGATATACTATGTACGATAAAAGTTCCAAAAACCT---------------------------------T--GGTCAGTTTCAA-ACAAATCTTAA------------TTTTCCAA-TGGAAAGTTAGCCGGCAATT--------------AAAGGGGGATTTCTTCGCCCAGTATCCGCAAGTCTTACCCACCCGAAAAATCCCCTAA------------------------------ATCCG--TGAAAAACTCACAAAAGCGGC----GCC-CTAGTGTGACCACTTGGCGATACCCCTTAAATTCACSizeHit CountTotal NormTotal
No Reads
droTak1
CTAATAA-TTAGTACCCTAT-ACT--------------------------------------CGATTTA-----AATTGGTCTTTTAAGAATCAATAATTTGAGAGAACTTGGTGCATTCAAA---------------------------------------------GTTTGAATTT------------------------------------------------------------------------------------------------------------------------------------------------------CAA-ATACATTTT------------------------------------------------------------------------------------------------------AACGATTTTTACAATATAAAAAGTAACCGTGATTTGAAATCCA-----------------------------------------------ATTCGGTAAATGGTTTTAAATT---SizeHit CountTotal NormTotal
No Reads
droEle1
GAA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTTTACAACGATCGAAAAGACTTACTGCCCTTAAAAATTCCCAAA------------------------------AATCG--AGGAAAACTCATAAAAGCGGT----GCA-GCAGTGTGACCGCTTGCCAGTTCGCCAGAAATTCACSizeHit CountTotal NormTotal
No Reads
droRho1
TTAGAAA-TTCAAAAACGAA-ACTCAATAAACAACATACAATTTTATAGCTTCTGATTTATTT-------------------GCA--------------------------ACAATGATGTAGCCG--------CCATGATTTAAACTAAATATTTACCACGATCTTA-------------AAATACC--------C---------AAAAAGTTTGACAAACCAGCGACGTGGCAACGCTACGAAAGTGG---------------ATACAAATT------------------------------------------T--AAATATCT-CAGCGATTCCC--GGGGACTTGATCCAAGTTTCAAATGGAAAGTTAAGGAATAAAT--------------AATATAAGA--ATTTTGACCAAGATCGAAAAGACTTACTGCCCTTAAAAATCGCAAGT-----------------------------AACCCG--AGAAAAGCTCATAAAAGCGGC----GCT-ACAGTGTGACCACTACGCGATACC-CACAAATTCACSizeHit CountTotal NormTotal
No Reads
droFic1
TC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTCTCCCTT-TAAAATCGCCAAC------------------------------AAAAAACCGAAAAACTCATAACGGCGGC----TCA-GCAGTGTGACCACTTGGAGATACGCAACAAATTC-CSizeHit CountTotal NormTotal
No Reads
droKik1
AAAAGAA-ATAAAGGCCAAA-GCT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TACCTT-GCT-G----TGT-GCAGTGTGACCGTCTGGCGCTGGCGAATTAATTCTGSizeHit CountTotal NormTotal
No Reads

Generated: 05/19/2015 at 03:42 PM