ID:

dsi_12958

 Coordinate:

node_26155:11958-12107 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-17.5 -17.0 -16.9 -16.8

Flybase annnotation

intergenic

Repeatable elements

NameClassFamilyStrand
DNAREP1_DMRCHelitron+
BARI1DNATcMar-Tc1-
IDEFIX_LTRLTRGypsy+

Sense Strand Reads

TGGATACATGCTGATTTCACAAAATTGAGCAACGGATATTTTGTTTACAGGTGGGTGATTTGATTGGGGTTTTCGATTTCATCCTCTGGACAATTTTGGGTTTAATCCATTTGGCCTTGCTTTGGGTTTTTTCCATTTTGTGACATTTGTTCTTAGTAGGCGTCTGTGGGCGTGTGCTTAAGTCTAAGGGACATGGATATGTCACTATACTTTATATAGTCGAAAAAGCTTGCTTCTGCCTGTTACATAA
************************************************************************************............((.((.....((((...(((.((((..((........(((...)))........))..)))))))....)))))).))**************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553485
Chicharo_3 day-old ovaries
 SRR553488
RT_0-2 hours eggs
 SRR553487
NRT_0-2 hours eggs
 SRR902008
ovaries
 SRR553486
Makindu_3 day-old ovaries
 SRR618934
dsim w501 ovaries
 GSM343915
embryo
 M053
female body
 SRR902009
testis
....................................................................................TCTGGACAATTTTGGGTTTAATCCATT........................................................................................................................................... 27 0 1 11.00 11 3 4 3 0 1 0 0 0 0
...................................................................................................................................................TGTTCTTAGTAGGCGTCTGTGGGCGTG............................................................................ 27 0 1 10.00 10 1 1 5 1 2 0 0 0 0
...........TGATTTCACAAAATTGAGCAACGGA...................................................................................................................................................................................................................... 25 0 1 7.00 7 2 1 2 0 2 0 0 0 0
....................................TATTTTGTTTACAGGTGGGTGATT.............................................................................................................................................................................................. 24 0 1 4.00 4 2 1 1 0 0 0 0 0 0
...................................................................................................................................................TGTTCTTAGTAGGCGTCTGTGGGC............................................................................... 24 0 1 4.00 4 0 1 1 2 0 0 0 0 0
...................................................TGGGTGATTTGATTGGGGTTTTCGA.............................................................................................................................................................................. 25 0 1 3.00 3 0 2 1 0 0 0 0 0 0
............................................................................................................................................TGACATTTGTTCTTAGTAGGCGTCTGT................................................................................... 27 0 1 3.00 3 1 0 0 1 1 0 0 0 0
....................................................................................TCTGGACAATTTTGGGTTTAATCCAT............................................................................................................................................ 26 0 1 3.00 3 1 0 1 0 1 0 0 0 0
.........................................................................................................................................TTGTGACATTTGTTCTTAGTAGGCGTC...................................................................................... 27 0 1 2.00 2 1 1 0 0 0 0 0 0 0
......................................................................................................................................................TCTTAGTAGGCGTCTGTGGGC............................................................................... 21 0 1 2.00 2 0 0 0 2 0 0 0 0 0
..........................................................................................................................................TGTGACATTTGTTCTTAGTAGGCGTC...................................................................................... 26 0 1 2.00 2 0 0 0 1 0 1 0 0 0
.....................................................................................................................................................TTCTTAGTAGGCGTCTGTGGGCGTG............................................................................ 25 0 1 2.00 2 0 0 2 0 0 0 0 0 0
............................................TTACAGGTGGGTGATTTGATTGGG...................................................................................................................................................................................... 24 0 1 1.00 1 0 0 0 0 0 1 0 0 0
....................................................................................................................................................................TCTGGGCGTGTGCTTAAGTCTAAGGGA........................................................... 27 1 1 1.00 1 0 0 1 0 0 0 0 0 0
.............................................................................................................................................................................................................TATACTTTATATAGTCGAAAAAG...................... 23 0 1 1.00 1 1 0 0 0 0 0 0 0 0
....TACATGCTGATTTCACAAAATTGAGC............................................................................................................................................................................................................................ 26 0 1 1.00 1 0 0 0 0 1 0 0 0 0
........TGCTGATTTCACAAAATTGAGCAAC......................................................................................................................................................................................................................... 25 0 1 1.00 1 0 0 0 0 0 1 0 0 0
...............TTCACAAAATTGAGCAACGGAAATTT................................................................................................................................................................................................................. 26 1 1 1.00 1 0 0 0 1 0 0 0 0 0
................................................................................................................................TTTTCCATTTTATTACAGTTGTTCT................................................................................................. 25 3 1 1.00 1 0 1 0 0 0 0 0 0 0
.......................................................................................................................................................................................CTAAGGGACATGGATATGTCA.............................................. 21 0 1 1.00 1 0 0 0 0 0 1 0 0 0
.....................................................................................................................................................TTCTTAGTAGGCGTCTGTGGGC............................................................................... 22 0 1 1.00 1 1 0 0 0 0 0 0 0 0
........................TTGAGCAACGGATATTTTGTTTAAAGG....................................................................................................................................................................................................... 27 1 1 1.00 1 0 0 0 1 0 0 0 0 0
...............................ACGGATATTTTGTTTACAGGTGGGTGA................................................................................................................................................................................................ 27 0 1 1.00 1 0 0 0 0 1 0 0 0 0
.........................................................................................................................................TTGTGACATTTGTTCT................................................................................................. 16 0 1 1.00 1 0 0 0 0 1 0 0 0 0
.......................................................................TTCGATTTCATCCTCTGGACAAT............................................................................................................................................................ 23 0 1 1.00 1 1 0 0 0 0 0 0 0 0
....TACATGCTGATTTCACTAAATTGA.............................................................................................................................................................................................................................. 24 1 1 1.00 1 0 1 0 0 0 0 0 0 0
....................................................................................TCTGGACAATTTTGGGTTTAATCCATTA.......................................................................................................................................... 28 1 1 1.00 1 0 0 0 0 1 0 0 0 0
....................................................................................................................................................................................................................TATATAGTCGAAAAAGCTTGCTTCTG............ 26 0 1 1.00 1 0 1 0 0 0 0 0 0 0
.................CACAAAATTGAGCAACGGATA.................................................................................................................................................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0
..............................................................................................................................................................................TGCTTAAGTCTAAGGGACATGGATATG................................................. 27 0 1 1.00 1 0 0 0 0 1 0 0 0 0
............................................................................................................................................TGACATTTGTTCTTAGTAGGCGTCTG.................................................................................... 26 0 1 1.00 1 0 0 0 1 0 0 0 0 0
..........................................................................................................................................TGTGACATTTGTTCTTAGTAGGCGTCTG.................................................................................... 28 0 1 1.00 1 0 0 0 1 0 0 0 0 0
.......................................TTTGTTTACAGGTGGGTGATTTGATT......................................................................................................................................................................................... 26 0 1 1.00 1 0 0 0 1 0 0 0 0 0
..............................AACGGATATTTTGTTTACAGGTGGG................................................................................................................................................................................................... 25 0 1 1.00 1 1 0 0 0 0 0 0 0 0
......................................................................................................................................................TCTTAGTAGGCGTCTGTGGGCGTG............................................................................ 24 0 1 1.00 1 1 0 0 0 0 0 0 0 0
........................................TTGTTTACAGGTGGGTGATTTGATTG........................................................................................................................................................................................ 26 0 1 1.00 1 0 0 0 1 0 0 0 0 0
.....................................................................................................................................................................................................................ATATAGTCGAAAAAGCTTGCTTCTGCC.......... 27 0 1 1.00 1 0 1 0 0 0 0 0 0 0
......................................................................................................................................ATTCTGTGACATTTTATCTTAGTAG........................................................................................... 25 3 1 1.00 1 0 0 0 0 0 0 1 0 0
..............................................................................................................................................................................TGCTTAAGTCTAAGGGACATGGATAT.................................................. 26 0 1 1.00 1 0 0 0 0 0 0 0 1 0
......................................................................................................................................................TCTTAGTAGGCGTCTGTGGGCGTGTG.......................................................................... 26 0 1 1.00 1 0 0 0 0 1 0 0 0 0
..............................AACGGATATTTTGTTTACAGGTGGGTG................................................................................................................................................................................................. 27 0 1 1.00 1 0 0 0 1 0 0 0 0 0
..................................................................................................................................................................TCTGTGGGCGTGTGCTTAAGTCTAAG.............................................................. 26 0 1 1.00 1 0 0 0 0 0 1 0 0 0
......................................................................................................................................................TCTTAGTAGGCGTCTGTGGGCGTGTGC......................................................................... 27 0 1 1.00 1 1 0 0 0 0 0 0 0 0
...............................................................TTGGGGTTTTCGATTTCATCCTCTGGA................................................................................................................................................................ 27 0 1 1.00 1 0 1 0 0 0 0 0 0 0
..............................................................................................................................................................................TGCTTAAGTCTAAGGGACATGGATA................................................... 25 0 1 1.00 1 0 1 0 0 0 0 0 0 0
.....................................................................................................................................................TTCTTAGTAGGCGCCTGTGGGCGTG............................................................................ 25 1 1 1.00 1 0 0 0 0 1 0 0 0 0
...............TTCACAAAATTGAGCAACGGATATTT................................................................................................................................................................................................................. 26 0 1 1.00 1 0 0 0 0 0 1 0 0 0
....TACATGCTGATTTCACAAAATTG............................................................................................................................................................................................................................... 23 0 1 1.00 1 0 0 0 0 0 1 0 0 0
..................................................................................................................................................................................TAAGTCTAAGGGACATGGATATGTCACTA........................................... 29 0 1 1.00 1 1 0 0 0 0 0 0 0 0
......................................................................................................................................................TCTTAGTAGGCGTCTGTGGACGTGT........................................................................... 25 1 1 1.00 1 0 1 0 0 0 0 0 0 0
............................................................................................................................................TGACATTTGTTCTTAGTAGGCGT....................................................................................... 23 0 1 1.00 1 0 0 1 0 0 0 0 0 0
.............................................TACAGGTGGGTGATTTGATTGGG...................................................................................................................................................................................... 23 0 1 1.00 1 0 0 0 1 0 0 0 0 0
...........................................................................................................................................GTGACATTTGTTCTTAGTAGGCGT....................................................................................... 24 0 1 1.00 1 0 0 0 1 0 0 0 0 0
.................................................................................TCCTCTGGACAATTTTGGGTTTAATC............................................................................................................................................... 26 0 1 1.00 1 1 0 0 0 0 0 0 0 0
......................................................................................................................................................TCTTAGTAGGCGTCTGTGGGCGT............................................................................. 23 0 1 1.00 1 0 1 0 0 0 0 0 0 0
......................................................................TTTCGATTTCATCCTCTGGAGAATT........................................................................................................................................................... 25 1 1 1.00 1 0 1 0 0 0 0 0 0 0
............................................................................................................................................................................TTTGCTTAAGTCTAAGGGACATGGA..................................................... 25 1 1 1.00 1 0 0 0 0 0 1 0 0 0
..................................................................................................................................................TTGTTCTTAGTAGGCGTCTGTGGGCGT............................................................................. 27 0 1 1.00 1 0 0 0 0 0 1 0 0 0
....................................................................................................................................................................TGTGGGCGTGTGCTTAAGTCT................................................................. 21 0 1 1.00 1 0 0 0 0 0 1 0 0 0
...................................................TGGGTGATTTGATTGGGGTTTTCGAT............................................................................................................................................................................. 26 0 1 1.00 1 0 0 0 0 0 1 0 0 0
.................................................................................................................................................................................................TGGATATGTCACTATACTTTATATAGT.............................. 27 0 1 1.00 1 1 0 0 0 0 0 0 0 0
.............................................TACAGGTGGGTGATTTGATTGGGGT.................................................................................................................................................................................... 25 0 1 1.00 1 0 0 1 0 0 0 0 0 0
...............................................................................................................................................................................................................TACTTTATATAGTCGAAAAAGCT.................... 23 0 2 0.50 1 1 0 0 0 0 0 0 0 0
.................................................GGTGGGTAGTTTGACTGGGGTTT.................................................................................................................................................................................. 23 3 2 0.50 1 0 1 0 0 0 0 0 0 0
..........................................................................................................................................TGTGACATTTGTTCT................................................................................................. 15 0 2 0.50 1 0 1 0 0 0 0 0 0 0
..................................................................................................TGTTTAATCCATTTGG........................................................................................................................................ 16 1 8 0.38 3 3 0 0 0 0 0 0 0 0
................................................GGGTGGGTGATTTGATGAGGGT.................................................................................................................................................................................... 22 3 3 0.33 1 0 0 0 0 0 0 1 0 0
..................ACAACTTTCAGCAACGGATA.................................................................................................................................................................................................................... 20 3 6 0.33 2 2 0 0 0 0 0 0 0 0
..........................GAGCCACGGATAATTTGT.............................................................................................................................................................................................................. 18 2 4 0.25 1 0 0 0 0 0 1 0 0 0
..............................................ACAGGTAGGTGAGTTGA........................................................................................................................................................................................... 17 2 11 0.09 1 0 1 0 0 0 0 0 0 0
...................................................................................................GTTTAATCCATTTGGGA...................................................................................................................................... 17 2 20 0.05 1 1 0 0 0 0 0 0 0 0
.....................................................................................................................TCCTTTGGATTTTTTACATTTT............................................................................................................... 22 3 20 0.05 1 0 1 0 0 0 0 0 0 0
................................................................................................................GGAGTTGCTTTGGGATTTTT...................................................................................................................... 20 3 20 0.05 1 0 0 0 0 0 0 0 0 1

Anti-sense strand reads

ACCTATGTACGACTAAAGTGTTTTAACTCGTTGCCTATAAAACAAATGTCCACCCACTAAACTAACCCCAAAAGCTAAAGTAGGAGACCTGTTAAAACCCAAATTAGGTAAACCGGAACGAAACCCAAAAAAGGTAAAACACTGTAAACAAGAATCATCCGCAGACACCCGCACACGAATTCAGATTCCCTGTACCTATACAGTGATATGAAATATATCAGCTTTTTCGAACGAAGACGGACAATGTATT
****************************************************************************............((.((.....((((...(((.((((..((........(((...)))........))..)))))))....)))))).))************************************************************************************ 		Read size # Mismatch Hit Count Total Norm Total SRR618934
dsim w501 ovaries
 SRR553488
RT_0-2 hours eggs
 SRR553487
NRT_0-2 hours eggs
 SRR902008
ovaries
 SRR553485
Chicharo_3 day-old ovaries
 SRR553486
Makindu_3 day-old ovaries
 M053
female body
 O002
Head
 M024
male body		 M023
head
................................................................................................................................................................................................................................TTTCGAACGAAGACGGACAATGTAT. 25 0 1 14.00 14 13 0 0 0 0 0 1 0 0 0
..................................................................................................................................................................AGACACCCGCACACGAATTCAGATT............................................................... 25 0 1 8.00 8 0 0 2 0 4 2 0 0 0 0
.................................................................................................................................................................................................................................TTCGAACGAAGACGGACAATGTAT. 24 0 1 4.00 4 4 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................ACACCCGCACACGAATTCAGATTCCCT........................................................... 27 0 1 3.00 3 0 0 0 2 0 1 0 0 0 0
.......................................................................................................................................................................................................................TATCAGCTTTTTCGAACGAAGACG........... 24 0 1 3.00 3 0 0 3 0 0 0 0 0 0 0
...............................................................................................................................................................................................................................TTTTCGAACGAAGACGGACAATGTAT. 26 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0
...................................................................................................................................AGGTAAAACACTGTAAACAAGAATCAT............................................................................................ 27 0 1 2.00 2 0 1 1 0 0 0 0 0 0 0
.................................................................................AGGAGACCTGTTAAAACCCAAATTA................................................................................................................................................ 25 0 1 2.00 2 0 2 0 0 0 0 0 0 0 0
..................................................................................................................................................AACAAGAATCATCCGCAGACACCCGC.............................................................................. 26 0 1 2.00 2 0 0 0 2 0 0 0 0 0 0
................................................................................................................................................................................................................................TTTCGAACGAAGACGGACA....... 19 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................................................TTTTTCGAACGAAGACGGACAATGTAT. 27 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................ACCTATACAGTGATATGAAATATAT................................ 25 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0
..................................................................................................................................................AACAAGAATCATCCGCAGACACCCGCAC............................................................................ 28 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0
..................................................................CCCAAAAGCTAAAGTAGGAGACCTGTT............................................................................................................................................................. 27 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0
...............................................................................................................................................GTAAACAAGAATCATCCGCAGACA................................................................................... 24 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0
...................................................................................................................................................................................................CTATACAGTGATATGAAAT.................................... 19 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0
.................................................................................AGGAGACCTGTTAAAACCCAAATTAG............................................................................................................................................... 26 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0
.....................................................................................................................................................................................................AAACAGTGATATGAAATATATCAGCTT.......................... 27 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0
...ACTGTACGACTAAAGTGTTT................................................................................................................................................................................................................................... 20 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................................................TTCGAACGAAGACGGA......... 16 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
....................................................................................................................................GGTAAAACACTGTAAACAAGAATCAT............................................................................................ 26 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................................ATGAAATATATCAGCTTTTTCGAACGA................ 27 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0
................................................................ACCCCAAAAGCTAAAGTAGGAGACCTGTT............................................................................................................................................................. 29 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0
.............................................................................................................AAACCGGAACGAAACCCAAAAAAGGT................................................................................................................... 26 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
...................................................................................................................................................ACAAGAATCATCCGCAGACACCGC............................................................................... 24 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0
....ATGTACGACTAAAGTGTTTTAACTCGT........................................................................................................................................................................................................................... 27 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................................................TTCGAACGAAGACGGACAATGTCT. 24 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0
......................................................................................................................................TAAAACACTGTGAACAAGAAT............................................................................................... 21 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0
................................................................................................................................................................................................................................TTTCGAACGAAGACGGACAAT..... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
............................CGTTGCCTATAAAACAAATGTCCAC..................................................................................................................................................................................................... 25 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0
.......................................................................................................................................AAAACACTGTAAACAAGAATCAT............................................................................................ 23 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
...................................................................CCAAAAGCTAAAGTAGGAGACCTGTT............................................................................................................................................................. 26 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0
....................................................................................................................................................................ACACCCGCACACGAATTCAGATTCCCTGT......................................................... 29 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0
....................................................................CAAAAGCTAAAGTAGGAGACCTGTTA............................................................................................................................................................ 26 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
..................................................................................GGAGACCTGTTAAAACCCAAAT.................................................................................................................................................. 22 0 2 0.50 1 0 1 0 0 0 0 0 0 0 0
................................................................................................................................................................................................................................TTTCGAACGAAGACG........... 15 0 2 0.50 1 1 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................................................GAACGAAGACGGACAATGTAT. 21 0 3 0.33 1 1 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................GACCTGTACCTATCCAGTG............................................. 19 3 9 0.33 3 0 0 0 0 0 0 3 0 0 0
............................................................................................................................................................................................CCTGTACCTATCCAGTGGA........................................... 19 3 16 0.25 4 0 0 0 0 0 0 1 0 2 1
.........................................................................................................................................................................................................................................AAGACGGACAATGTAT. 16 0 20 0.20 4 4 0 0 0 0 0 0 0 0 0
............................................................................................................................CCAAAACAGGTAGAACAGT........................................................................................................... 19 3 20 0.15 3 0 0 0 0 0 0 0 0 3 0
..........................................................................................................................................................................................................................................AGACGGACAATGTATT 16 0 8 0.13 1 1 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................................................TTAGTCGAAAGAAGACGGACAATGTAT. 27 3 8 0.13 1 1 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................GTACCTATCCAGTGATCC......................................... 18 3 17 0.12 2 0 0 0 0 0 0 0 0 0 2
.............................................................................................................................................................................................CTGTACCTATCCAGTGGA........................................... 18 3 20 0.05 1 0 0 0 0 0 0 0 0 1 0
................................................................................................................................................................................................................................TCCCGAACGAAGACAGACAATGTAT. 25 3 20 0.05 1 1 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................AGATTCCCTGTCCCTG.................................................... 16 2 20 0.05 1 0 0 0 0 0 1 0 0 0 0
......................................................................ATAGCTAAAGTAGGA..................................................................................................................................................................... 15 1 20 0.05 1 0 0 1 0 0 0 0 0 0 0
.................................................................TCCCAACAGCTAAAGTGG....................................................................................................................................................................... 18 3 20 0.05 1 0 0 0 0 0 0 1 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim2 node_26155:11908-12157 - dsi_12958 TGGATA-------------------CA----------------TGCTG-ATTTCACAAAATTGAGCAACGGATATT----------------------------------------------TT-----------GTTTACAGGTGGGTGA---------TTTGATTG------------------------------------------------------GGGTTTTCGATTTCATCCTCTGG-----ACAAT--------------TTTGGG-------TT-TAATCCATTTGGC--CTTGCTTTGGGTTTTTTCCATTTTGTGACATTTGTTCTTAGTAGGCGTCTGTGGGCGTGTGCTTAA----------------------------------------------------GTCTAAG------GGACATGGATATGTCACTATACTTTATATAGTCGAAAAAGCTTGCTTCTGCCTGTTAC-ATAA---------------
droSec2 scaffold_12946:257-506 - GTGTCCGGATTTAAACGGGGAATTCAAATTAATTAAGAATGAAAACTAGACTTCGGCAAGCCGAAGTTTCTATACTGTTCCATAATTC----TTT---------AA--TAACT-------TTAT-----------TTGCACACACACACTA---------TCATAACTCCATTCGC-----------ATCTATTTTGATTTGTGCACA---------------------------------------------AT--------------TTT-------------AGGTACATTTAACAGCTTGCTTGCAAGTTTT--GATTTTG------------------------------------------------------------------------------TGTCTTTTTACAGTGCTGCGAACAA-----GAAGCCA-G------------------------------TCACTGAGAACGCTTACTA------------------
dm3 chr3RHet:1017257-1017499 + AAATAG------------GGAAATTAAATTAATCAAGAAAGGAAGCTAGACTTCGGCAAGCCGAAGCTATAAAACCATTA-------------------------A--TAACA-------TTATTTTCAC-------------------------------------TCCATTCGCGTCGAGAGTGAATCTGTTCTGATTTGTGCACAATTTAACCAAATTTACGTT--------------------------------------------G---TGCCTTCTTGCGGTACACTT----GCTCCCTTGCAAGTTTT--GATTTTG------------------------------------------------------------------------------TGTCTTTGAACAGTGGTCGGAAAAA----ATTATGGAAA------------------------------CAAAAGTTTTCTGCTGCTA------------------
droEre2 scaffold_4845:1648639-1648733 + GG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTCATTTAACAGCTTGCTTTCAATTTTA--GATTTTG------------------------------------------------------------------------------TGTCTGTGTACAGTGGTCTGAAACAAACAAAAATGGAAA------------------------------CTAATGTTACCTGTTTCCA------------------
droYak3 v2_chrUn_001:699674-699821 - TCTTT---------------------------------------------------------------------------------------------------CG--TGCGT-------TTGT-----------TTGTA--TACACATAAACCGCGCTAT-GCATCC------------------------------------------------------GCTTTCTCAATCTCTCGCTCTCTTATACAAAATTCAAAG---------------------TTCCGGTACATTTAACAGCTCGCTTACAAGTTTT--AATTTTG------------------------------------------------------------------------------TGTCTTCGTACATTAATCTGAA------------------------------------------------------------------------------------
droEug1 scf7180000408895:5279-5352 - GAAAT-------------------GAAATTAAACGAGGTCGGAAACTA-ACTTCGGCAAGCCGAAGTTTTAATACCCTTGCAATTTTC----CCG--------------------------------------------------------------------------------------------------------------------------AAT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droBia1 scf7180000302121:70768-70990 - AAATT--------------------ATTTAAAACAAGAAAGGAAGTTA-ACTTCGGCAAGCCGAAGTTTGTATACCCTTGCAGTTATAAGAAATAATCAACTTTAG-TAAATA-------ATTTTTTCATTTTATTTTCCCACTAATTT-------------------------------------------TCCGATTTTTCCTAT-----------------------------------GACAGCTACATGATATAGTCGTCCGATTTT----------------------------------TATAAAATTT--AA----------------------------------------------TTCCTATTTCAGAACTAATTAAAAAATGTTGTT-CTATACCCTTGC------------------------------------------------------------------------------A------------------
droTak1 scf7180000410408:42180-42324 - AA----------------------------------GAAAGGAAGCTA-GCTTCGGCCAGCCGAAGCTTATATACCCTTGCAGATTAA----GTG--------------------------------------------------------------------------------------------------------------------------AA------------------------------------------------------------------------------------------------------------------------------CACCTATAGTTTAGTGCTCAC----------------------------------------------------ACT---------------------TATCGGTGCAGTTCCAGGGATTGCAGAATCCTGC--GTGCCTATTT--AAAATTTTGTTTTTAAGTT
droEle1 scf7180000490670:4348-4591 + GCACAAAAACTTATGTATTAAATCCACTTTAAACAAGAACAGGTTTAA-ATTTCGGCAAGCCGAAGTTTACATACCATTGAATTCTTAAAAAC-ATCTAAATCTCGATTTATAGCCGTGCTTGT-TT--------CAAAACATTGAAGCTA---------TGATGATTTTTAGCTC-----------AATTATTCGAACGTTCCTATG---------------------------------------------AT--------------TTT----------------------------------AATAAAATTA--AA----------------------------------------------AGCGTAGTTCAGAAATTTTAAACCACTACTATTTTTATATCCTTGC------------------------------------------------------------------------------AGAG---------------
droRho1 scf7180000777589:1736-1909 - TTTCGT-------------------AA----------------TTCTT-ATCTG------------------------------------------------------TGTTT-------TCTT-----------TTGTGCATACACTTTA---------ACTTATTT------------------------------------------------------ACGTTCCCGCTCTCTTGCTCTCTAGTTCTAAGTTCTAAGCGTGCAGTTTC---TGCGCTCTTGCGGTACTTATAACTGCTCGCTTATAAATTTC--AATTCGC------------------------------------------------------------------------------TTTCTTGGTACAGTGGTCCCAATAA---------------------------------------------------------------------------------
droFic1 scf7180000453572:385-446 + GAATT-------------------CAGTACAAACAAGGAAGGAAGCTA-GCTTCGGCAAGCCGAAGCTTATATACCCTTGCA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droWil2 scf2_1100000004830:624058-624112 + AAACTA-------------------T-------------------GTAACTTTGGGAATGCCGAAATTTATATACCCTTACATATTTT----TCA--------------------------------------------------------------------------------------------------------------------------AA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
TGGATA-------------------CA----------------TGCTG-ATTTCACAAAATTGAGCAACGGATATT----------------------------------------------TT-----------GTTTACAGGTGGGTGA---------TTTGATTG------------------------------------------------------GGGTTTTCGATTTCATCCTCTGG-----ACAAT--------------TTTGGG-------TT-TAATCCATTTGGC--CTTGCTTTGGGTTTTTTCCATTTTGTGACATTTGTTCTTAGTAGGCGTCTGTGGGCGTGTGCTTAA----------------------------------------------------GTCTAAG------GGACATGGATATGTCACTATACTTTATATAGTCGAAAAAGCTTGCTTCTGCCTGTTAC-ATAA---------------SizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
................................................................................................................................................................................................................................................TCTGG-----ACAAT--------------TTTGGG-------TT-TAATCCATT.......................................................................................................................................................................................................................27111.001100000031340000000
............................................................................................................................................................................................................................................................................................................................................TGTTCTTAGTAGGCGTCTGTGGGCGTG......................................................................................................................................................27110.001000000012510010000
..............................................TG-ATTTCACAAAATTGAGCAACGGA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................2517.00700000022210000000
........................................................................TATT----------------------------------------------TT-----------GTTTACAGGTGGGTGA---------TT...........................................................................................................................................................................................................................................................................................................................................................2414.00400000020110000000
............................................................................................................................................................................................................................................................................................................................................TGTTCTTAGTAGGCGTCTGTGGGC.........................................................................................................................................................2414.00400000000110020000
................................................................................................................................................TGGGTGA---------TTTGATTG------------------------------------------------------GGGTTTTCGA.....................................................................................................................................................................................................................................................................................2513.00300000000120000000
.....................................................................................................................................................................................................................................................................................................................................TGACATTTGTTCTTAGTAGGCGTCTGT.............................................................................................................................................................2713.00300000011000010000
................................................................................................................................................................................................................................................TCTGG-----ACAAT--------------TTTGGG-------TT-TAATCCAT........................................................................................................................................................................................................................2613.00300000011100000000
..................................................................................................................................................................................................................................................................................................................................TTGTGACATTTGTTCTTAGTAGGCGTC................................................................................................................................................................2712.00200000010010000000
...............................................................................................................................................................................................................................................................................................................................................TCTTAGTAGGCGTCTGTGGGC.........................................................................................................................................................2112.00200000000000020000
...................................................................................................................................................................................................................................................................................................................................TGTGACATTTGTTCTTAGTAGGCGTC................................................................................................................................................................2612.00200000000001010000
..............................................................................................................................................................................................................................................................................................................................................TTCTTAGTAGGCGTCTGTGGGCGTG......................................................................................................................................................2512.00200000000200000000
.........................................................................................................................................TTACAGGTGGGTGA---------TTTGATTG------------------------------------------------------GG.............................................................................................................................................................................................................................................................................................2411.00100000000001000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATACTTTATATAGTCGAAAAAG......................................2311.00100000010000000000
....TA-------------------CA----------------TGCTG-ATTTCACAAAATTGAGC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.00100000001000000000
...........................................TGCTG-ATTTCACAAAATTGAGCAAC........................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.00100000000001000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................CTAAG------GGACATGGATATGTCA..............................................................2111.00100000000001000000
..............................................................................................................................................................................................................................................................................................................................................TTCTTAGTAGGCGTCTGTGGGC.........................................................................................................................................................2211.00100000010000000000
...................................................................ACGGATATT----------------------------------------------TT-----------GTTTACAGGTGGGTGA---------.............................................................................................................................................................................................................................................................................................................................................................2711.00100000001000000000
..................................................................................................................................................................................................................................................................................................................................TTGTGACATTTGTTCT...........................................................................................................................................................................1611.00100000001000000000
...................................................................................................................................................................................................................................TTCGATTTCATCCTCTGG-----ACAAT--------------................................................................................................................................................................................................................................................2311.00100000010000000000
................................................................................................................................................................................................................................................TCTGG-----ACAAT--------------TTTGGG-------TT-TAATCCATTA......................................................................................................................................................................................................................2811.00100000001000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATATAGTCGAAAAAGCTTGCTTCTG............................2611.00100000000010000000
.....................................................CACAAAATTGAGCAACGGATA...................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100000010000000000
.......................................................................................................................................................................................................................................................................................................................................................................TGCTTAA----------------------------------------------------GTCTAAG------GGACATGGATATG.................................................................2711.00100000001000000000
.....................................................................................................................................................................................................................................................................................................................................TGACATTTGTTCTTAGTAGGCGTCTG..............................................................................................................................................................2611.00100000000000010000
...................................................................................................................................................................................................................................................................................................................................TGTGACATTTGTTCTTAGTAGGCGTCTG..............................................................................................................................................................2811.00100000000000010000
...........................................................................T----------------------------------------------TT-----------GTTTACAGGTGGGTGA---------TTTGATT......................................................................................................................................................................................................................................................................................................................................................2611.00100000000000010000
..................................................................AACGGATATT----------------------------------------------TT-----------GTTTACAGGTGGG.........................................................................................................................................................................................................................................................................................................................................................................2511.00100000010000000000
...............................................................................................................................................................................................................................................................................................................................................TCTTAGTAGGCGTCTGTGGGCGTG......................................................................................................................................................2411.00100000010000000000
..........................................................................................................................TT-----------GTTTACAGGTGGGTGA---------TTTGATTG------------------------------------------------------...............................................................................................................................................................................................................................................................................................2611.00100000000000010000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATAGTCGAAAAAGCTTGCTTCTGCC..........................2711.00100000000010000000
.......................................................................................................................................................................................................................................................................................................................................................................TGCTTAA----------------------------------------------------GTCTAAG------GGACATGGATAT..................................................................2611.00100010000000000000
...............................................................................................................................................................................................................................................................................................................................................TCTTAGTAGGCGTCTGTGGGCGTGTG....................................................................................................................................................2611.00100000001000000000
..................................................................AACGGATATT----------------------------------------------TT-----------GTTTACAGGTGGGTG.......................................................................................................................................................................................................................................................................................................................................................................2711.00100000000000010000
...........................................................................................................................................................................................................................................................................................................................................................TCTGTGGGCGTGTGCTTAA----------------------------------------------------GTCTAAG------..............................................................................2611.00100000000001000000
...............................................................................................................................................................................................................................................................................................................................................TCTTAGTAGGCGTCTGTGGGCGTGTGC...................................................................................................................................................2711.00100000010000000000
.....................................................................................................................................................................TTG------------------------------------------------------GGGTTTTCGATTTCATCCTCTGG-----A..................................................................................................................................................................................................................................................................2711.00100000000010000000
.......................................................................................................................................................................................................................................................................................................................................................................TGCTTAA----------------------------------------------------GTCTAAG------GGACATGGATA...................................................................2511.00100000000010000000
...................................................TTCACAAAATTGAGCAACGGATATT----------------------------------------------T..................................................................................................................................................................................................................................................................................................................................................................................................2611.00100000000001000000
....TA-------------------CA----------------TGCTG-ATTTCACAAAATTG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.00100000000001000000
...........................................................................................................................................................................................................................................................................................................................................................................TAA----------------------------------------------------GTCTAAG------GGACATGGATATGTCACTA...........................................................2911.00100000010000000000
.....................................................................................................................................................................................................................................................................................................................................TGACATTTGTTCTTAGTAGGCGT.................................................................................................................................................................2311.00100000000100000000
..........................................................................................................................................TACAGGTGGGTGA---------TTTGATTG------------------------------------------------------GG.............................................................................................................................................................................................................................................................................................2311.00100000000000010000
....................................................................................................................................................................................................................................................................................................................................GTGACATTTGTTCTTAGTAGGCGT.................................................................................................................................................................2411.00100000000000010000
.............................................................................................................................................................................................................................................TCCTCTGG-----ACAAT--------------TTTGGG-------TT-TAATC...........................................................................................................................................................................................................................2611.00100000010000000000
...............................................................................................................................................................................................................................................................................................................................................TCTTAGTAGGCGTCTGTGGGCGT.......................................................................................................................................................2311.00100000000010000000
...........................................................................................................................................................................................................................................................................................................................................TTGTTCTTAGTAGGCGTCTGTGGGCGT.......................................................................................................................................................2711.00100000000001000000
.............................................................................................................................................................................................................................................................................................................................................................TGTGGGCGTGTGCTTAA----------------------------------------------------GTCT.......................................................................................2111.00100000000001000000
................................................................................................................................................TGGGTGA---------TTTGATTG------------------------------------------------------GGGTTTTCGAT....................................................................................................................................................................................................................................................................................2611.00100000000001000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGATATGTCACTATACTTTATATAGT..............................................2711.00100000010000000000
..........................................................................................................................................TACAGGTGGGTGA---------TTTGATTG------------------------------------------------------GGGT...........................................................................................................................................................................................................................................................................................2511.00100000000100000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACTTTATATAGTCGAAAAAGCT....................................2320.50100000010000000000
...................................................................................................................................................................................................................................................................................................................................TGTGACATTTGTTCT...........................................................................................................................................................................1520.50100000000010000000
..................................................................................................................................................................................................................................................................................G-------TT-TAATCCATTTGGG--A................................................................................................................................................................................................................17200.05100000010000000000
droSec2
GTGTCCGGATTTAAACGGGGAATTCAAATTAATTAAGAATGAAAACTAGACTTCGGCAAGCCGAAGTTTCTATACTGTTCCATAATTC----TTT---------AA--TAACT-------TTAT-----------TTGCACACACACACTA---------TCATAACTCCATTCGC-----------ATCTATTTTGATTTGTGCACA---------------------------------------------AT--------------TTT-------------AGGTACATTTAACAGCTTGCTTGCAAGTTTT--GATTTTG------------------------------------------------------------------------------TGTCTTTTTACAGTGCTGCGAACAA-----GAAGCCA-G------------------------------TCACTGAGAACGCTTACTA------------------SizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
................................................................................................................................................................................................................................................................................................................CTTGCAAGTTTT--GATTTTG------------------------------------------------------------------------------TGT.......................................................................................................2250.2010001
dm3
AAATAG------------GGAAATTAAATTAATCAAGAAAGGAAGCTAGACTTCGGCAAGCCGAAGCTATAAAACCATTA-------------------------A--TAACA-------TTATTTTCAC-------------------------------------TCCATTCGCGTCGAGAGTGAATCTGTTCTGATTTGTGCACAATTTAACCAAATTTACGTT--------------------------------------------G---TGCCTTCTTGCGGTACACTT----GCTCCCTTGCAAGTTTT--GATTTTG------------------------------------------------------------------------------TGTCTTTGAACAGTGGTCGGAAAAA----ATTATGGAAA------------------------------CAAAAGTTTTCTGCTGCTA------------------SizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
...............................................................................................................................................................................................................................................................................................................................ATTTTG------------------------------------------------------------------------------TGTCTTTGAACAGTGGTC........................................................................................2412.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................T----GCTCCCTTGCAAGTTTT--GATTTTG------------------------------------------------------------------------------TG........................................................................................................2712.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................T--GATTTTG------------------------------------------------------------------------------TGTCTTTGAACAGTGG..........................................................................................2412.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................CGAGAGTGAATCTGTTCTGAT......................................................................................................................................................................................................................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000
.................................................................................................................................................................................TCGAGAGTGAATCTGTTCTGATTTG...................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
................................................................................................................................................................................................................................................................................................................................TTTTG------------------------------------------------------------------------------TGTCTTTGAACAGTGGTCG.......................................................................................2411.0010000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................GAACAGTGGTCGGAAAAA----ATTATGGA.....................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000
.................................................................................................................................................................................................................................................................................................................................TTTG------------------------------------------------------------------------------TGTCTTTGAACAGTGGT.........................................................................................2111.0010000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................GAGAGTGAATCTGTTCTGATT.....................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................TGAACAGTGGTCGGAAAAA----ATTATGG......................................................................2611.0010000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................TTAAATTAATCAAGAAAGGAAGCTAGA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................TG------------------------------------------------------------------------------TGTCTTTGAACAGTGGTCG.......................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................GAACAGTGGTCGGAAAAA----ATTA.........................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
.....................................AAAGGAAGCTAGACTTCGGCAAA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000
........................................................CAAGCCGAAGCTATAAAACCAT...............................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................TTGCAAGTTTT--GATTTTG------------------------------------------------------------------------------TGTC......................................................................................................2221.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................TTTTG------------------------------------------------------------------------------TGTCTTTGAACAGTGG..........................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................TTTG------------------------------------------------------------------------------TGTCTTTGAACAGTGGTC........................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................TCCATTCGCGTCGAGAGTGAATCTGTTC..........................................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................TTT--GATTTTG------------------------------------------------------------------------------TGTCTTTGAACAGTGG..........................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................CGTCGAGAGTGAATCTGTTCT.........................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................TCCCTTGCAAGTTTT--GATTTTG------------------------------------------------------------------------------TGTC......................................................................................................2620.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................CCCTTGCAAGTTTT--GATTTTG------------------------------------------------------------------------------TGTC......................................................................................................2520.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................TCCCTTGCAAGTTTT--GATTTTG------------------------------------------------------------------------------TG........................................................................................................2430.3310000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droEre2
GG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTCATTTAACAGCTTGCTTTCAATTTTA--GATTTTG------------------------------------------------------------------------------TGTCTGTGTACAGTGGTCTGAAACAAACAAAAATGGAAA------------------------------CTAATGTTACCTGTTTCCA------------------SizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
No Reads
droYak3
TCTTT---------------------------------------------------------------------------------------------------CG--TGCGT-------TTGT-----------TTGTA--TACACATAAACCGCGCTAT-GCATCC------------------------------------------------------GCTTTCTCAATCTCTCGCTCTCTTATACAAAATTCAAAG---------------------TTCCGGTACATTTAACAGCTCGCTTACAAGTTTT--AATTTTG------------------------------------------------------------------------------TGTCTTCGTACATTAATCTGAA------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
No Reads
droEug1
GAAAT-------------------GAAATTAAACGAGGTCGGAAACTA-ACTTCGGCAAGCCGAAGTTTTAATACCCTTGCAATTTTC----CCG--------------------------------------------------------------------------------------------------------------------------AAT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droBia1
AAATT--------------------ATTTAAAACAAGAAAGGAAGTTA-ACTTCGGCAAGCCGAAGTTTGTATACCCTTGCAGTTATAAGAAATAATCAACTTTAG-TAAATA-------ATTTTTTCATTTTATTTTCCCACTAATTT-------------------------------------------TCCGATTTTTCCTAT-----------------------------------GACAGCTACATGATATAGTCGTCCGATTTT----------------------------------TATAAAATTT--AA----------------------------------------------TTCCTATTTCAGAACTAATTAAAAAATGTTGTT-CTATACCCTTGC------------------------------------------------------------------------------A------------------SizeHit CountTotal NormTotal
No Reads
droTak1
AA----------------------------------GAAAGGAAGCTA-GCTTCGGCCAGCCGAAGCTTATATACCCTTGCAGATTAA----GTG--------------------------------------------------------------------------------------------------------------------------AA------------------------------------------------------------------------------------------------------------------------------CACCTATAGTTTAGTGCTCAC----------------------------------------------------ACT---------------------TATCGGTGCAGTTCCAGGGATTGCAGAATCCTGC--GTGCCTATTT--AAAATTTTGTTTTTAAGTTSizeHit CountTotal NormTotal
No Reads
droEle1
GCACAAAAACTTATGTATTAAATCCACTTTAAACAAGAACAGGTTTAA-ATTTCGGCAAGCCGAAGTTTACATACCATTGAATTCTTAAAAAC-ATCTAAATCTCGATTTATAGCCGTGCTTGT-TT--------CAAAACATTGAAGCTA---------TGATGATTTTTAGCTC-----------AATTATTCGAACGTTCCTATG---------------------------------------------AT--------------TTT----------------------------------AATAAAATTA--AA----------------------------------------------AGCGTAGTTCAGAAATTTTAAACCACTACTATTTTTATATCCTTGC------------------------------------------------------------------------------AGAG---------------SizeHit CountTotal NormTotal
No Reads
droRho1
TTTCGT-------------------AA----------------TTCTT-ATCTG------------------------------------------------------TGTTT-------TCTT-----------TTGTGCATACACTTTA---------ACTTATTT------------------------------------------------------ACGTTCCCGCTCTCTTGCTCTCTAGTTCTAAGTTCTAAGCGTGCAGTTTC---TGCGCTCTTGCGGTACTTATAACTGCTCGCTTATAAATTTC--AATTCGC------------------------------------------------------------------------------TTTCTTGGTACAGTGGTCCCAATAA---------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droFic1
GAATT-------------------CAGTACAAACAAGGAAGGAAGCTA-GCTTCGGCAAGCCGAAGCTTATATACCCTTGCA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droWil2
AAACTA-------------------T-------------------GTAACTTTGGGAATGCCGAAATTTATATACCCTTACATATTTT----TCA--------------------------------------------------------------------------------------------------------------------------AA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
No Reads

Generated: 05/19/2015 at 05:29 AM