ID:

dsi_12952

 Coordinate:

3r:10063299-10063448 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-32.0 -31.9 -31.8

Flybase annnotation

CDS [3r_10063449_10063659_+]; exon [3r_10063449_10063659_+]; intron [3r_10061074_10063448_+]

No Repeatable elements found

Sense Strand Reads

--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
GAATAGAATTTGTCCGTGTGGCACGTTTTCCCTAAATGAATTTGTCAATTGCGTGGTTCTTTAACTTCAATTAGCCGCCACCAGATCGGTTAATTTAATTTGATTCAATAGCGGTATTGTCCGCGGTCACGGCCCCTACACCTATTGTATAACAATGAAGAGAGCCCGGAAATAGAAAGCATTTTCTTTGTCTCCTGCAGCGGAGCCACCCACTCCAGACTGGTCATCTGCGATGAGAGCGGTCAATCCG
**************************************************.((.((((((....(((((((((((((.........))))))))...........((((((..(((....(((......)))....)))..))))))........)))))))))))))((...(((((....)))))...))........************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR902009
testis
 SRR553486
Makindu_3 day-old ovaries
 SRR553487
NRT_0-2 hours eggs
 M025
embryo
 SRR553485
Chicharo_3 day-old ovaries
 GSM343915
embryo
 SRR618934
dsim w501 ovaries
 SRR553488
RT_0-2 hours eggs
.....................................................................................................................................................................................................................TCCAGACTGGTCATCTACGATGAGA............ 25 1 1 1.00 1 0 1 0 0 0 0 0 0
.............................................................................................................................................................................................................................GGTCATCTGCGATGAGAGC.......... 19 0 1 1.00 1 0 0 0 0 0 1 0 0
................................................................................................................................................TTGTATAACAATGAAGTGAGCCCGTAAATA............................................................................ 30 2 1 1.00 1 1 0 0 0 0 0 0 0
..............................................................................................................................................TATTGTACAACAATGAAGAGAGCCCGGA................................................................................ 28 1 1 1.00 1 0 0 0 0 1 0 0 0
..................................................................................................................................................................AGCCCGGAAATAGAAAGCATT................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0
................................................................CATCGAGTAGCCGCCACCAGA..................................................................................................................................................................... 21 3 1 1.00 1 0 0 1 0 0 0 0 0
......................................................................................................................................................................................................GGCGGAGCCACCCACTCCAGACTG............................ 24 1 1 1.00 1 0 0 0 1 0 0 0 0
...........GTTCGTGTGGCAGGTTTT............................................................................................................................................................................................................................. 18 2 14 0.36 5 5 0 0 0 0 0 0 0
......................................................................................................................................................................................................................CCAGACTCGTCAGCTGCGAC................ 20 3 6 0.17 1 0 1 0 0 0 0 0 0
...........................................................................................................................................CTCTATTGTATAACAATTAAG.......................................................................................... 21 3 7 0.14 1 0 0 1 0 0 0 0 0
.................................................................................................................................................................................................CCTGCATCGGAGCCA.......................................... 15 1 9 0.11 1 0 0 1 0 0 0 0 0
.......................................................................................................................................................................................TTCTTTGTCGCCTGCAACTGA.............................................. 21 3 11 0.09 1 0 1 0 0 0 0 0 0
..................................................................................................................................................................................................CTGCAGCGGAGCCATC........................................ 16 1 11 0.09 1 0 1 0 0 0 0 0 0
.........................................................................................................................................................AACCAAGAGAGCCCGGA................................................................................ 17 2 11 0.09 1 0 0 0 0 0 0 1 0
............................................................................................................................................................................................CGTCTCCTGCAGTGGTGCC........................................... 19 3 20 0.05 1 0 0 0 0 0 0 1 0
...................................................................................................................................................................................................................................CTGCGATGAGACCGGG....... 16 2 20 0.05 1 0 0 0 0 0 0 1 0
..........................................................CCTTTACTTCAATTAGC............................................................................................................................................................................... 17 2 20 0.05 1 0 0 0 0 0 0 0 1

Anti-sense strand reads

CTTATCTTAAACAGGCACACCGTGCAAAAGGGATTTACTTAAACAGTTAACGCACCAAGAAATTGAAGTTAATCGGCGGTGGTCTAGCCAATTAAATTAAACTAAGTTATCGCCATAACAGGCGCCAGTGCCGGGGATGTGGATAACATATTGTTACTTCTCTCGGGCCTTTATCTTTCGTAAAAGAAACAGAGGACGTCGCCTCGGTGGGTGAGGTCTGACCAGTAGACGCTACTCTCGCCAGTTAGGC
**************************************************.((.((((((....(((((((((((((.........))))))))...........((((((..(((....(((......)))....)))..))))))........)))))))))))))((...(((((....)))))...))........************************************************** 		Read size # Mismatch Hit Count Total Norm Total M024
male body		 M023
head
 O002
Head
 SRR553488
RT_0-2 hours eggs
 SRR553486
Makindu_3 day-old ovaries
 SRR553485
Chicharo_3 day-old ovaries
..............................................................................................................CGCCATAACAGGCGCCAGTGC....................................................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0
.....................................................................................................................ACAGGCGCCAGTGCCGGG................................................................................................................... 18 0 1 1.00 1 0 0 1 0 0 0
................................................................................................................................TGCCGGGGATGTGGATAACATA.................................................................................................... 22 0 1 1.00 1 0 1 0 0 0 0
..............................................................................................................................................................CCTCTCGGGCCTTTATCTTTC....................................................................... 21 1 1 1.00 1 1 0 0 0 0 0
........................................................................................................................................ATGGCGATAACAAATTGTTACT............................................................................................ 22 3 3 0.67 2 0 0 0 2 0 0
..............................................................................................................................AGCGACGGGGATGTGGATA......................................................................................................... 19 2 3 0.33 1 0 0 0 1 0 0
.................................................................AGGTTAATGGGTGGTGGTCTA.................................................................................................................................................................... 21 3 3 0.33 1 0 0 0 0 1 0
....................................................................................................................................................................................TAAAAGAAACACAGGA...................................................... 16 1 18 0.06 1 0 0 0 0 1 0
.........................................................AGAAGTTGAAGTTAATA................................................................................................................................................................................ 17 2 20 0.05 1 0 0 0 0 0 1

Generated: 04/24/2015 at 10:24 AM