dsi_12948

Name	Class	Family	Strand
TART_DV	LINE	Jockey	+
(CAG)n	Simple_repeat	Simple_repeat	+
TART_DV	LINE	Jockey	+

CACATCATCATTATTATCGCTTCCACAAGCAACAGCAGCAACATCAGCAGCACCACCAACAACAACAGAGCTGCCTGCGACAGCAGCAAAGACAATTGCAATGGGAGCAGCAGCAGCATCAGCAGCAACATCAGCAGCTGCAACATCAACTGACCAACAGCTCCAGCGAATTCGATGAGTTCCATTGGCCCAGCAAGCAGACGGGTGGCGAAAATCTGGGTGGCAAAATCTATATAACACCCGCAGACAT ***********************************************************************************************************************.........((....((((.......................))))......))*************************************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	SRR618934 dsim w501 ovaries	SRR553487 NRT_0-2 hours eggs	SRR902009 testis	GSM343915 embryo
..............................................................................................................................................................AGGTCCAGCGAATTCG............................................................................	16	1	2	1.00	2	2	0	0	0
......................................................................................................................................................TGACCAACAGCTCCAGCGAATTCGA...........................................................................	25	0	1	1.00	1	0	0	1	0
...................................................................................AAGAAAAGACAATTACAATGGGA................................................................................................................................................	23	3	1	1.00	1	0	1	0	0
.........................................................................................................................................................................................TGGCCTAGCAAGTAGACGGA.............................................	20	3	2	0.50	1	0	0	0	1
.....................................................................................GCACATACAATTGAAATGGGA................................................................................................................................................	21	3	8	0.13	1	0	1	0	0
.........................................................................................................................GCAGCAACATCAGCAGCT...............................................................................................................	18	0	13	0.08	1	1	0	0	0
.............................................................................................................................................................CAGGTCCAGCGAATT..............................................................................	15	1	14	0.07	1	1	0	0	0
.......................................................................TGCGTGCGACAGCAGC...................................................................................................................................................................	16	1	20	0.05	1	1	0	0	0

GTGTAGTAGTAATAATAGCGAAGGTGTTCGTTGTCGTCGTTGTAGTCGTCGTGGTGGTTGTTGTTGTCTCGACGGACGCTGTCGTCGTTTCTGTTAACGTTACCCTCGTCGTCGTCGTAGTCGTCGTTGTAGTCGTCGACGTTGTAGTTGACTGGTTGTCGAGGTCGCTTAAGCTACTCAAGGTAACCGGGTCGTTCGTCTGCCCACCGCTTTTAGACCCACCGTTTTAGATATATTGTGGGCGTCTGTA *************************************************************************.........((....((((.......................))))......))***********************************************************************************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	SRR618934 dsim w501 ovaries	SRR553487 NRT_0-2 hours eggs	SRR553488 RT_0-2 hours eggs	SRR553485 Chicharo_3 day-old ovaries	M023 head	SRR553486 Makindu_3 day-old ovaries
............................................................................................................................................................GGTCCAGGTCGCTTAAGC............................................................................	18	2	7	2.43	17	17	0	0	0	0	0
....AGTAGCAATAATAGTGAATGTGT...............................................................................................................................................................................................................................	23	3	1	1.00	1	0	1	0	0	0	0
....................AAGTTGTTCGTTATCGTCGTTGT...............................................................................................................................................................................................................	23	2	1	1.00	1	0	1	0	0	0	0
.................................................................................................................................................................AGGTCGCTTAAGCTA..........................................................................	15	0	1	1.00	1	1	0	0	0	0	0
............................................................................................................................................................TGTCCAGGTCGCTTAAGC............................................................................	18	1	1	1.00	1	1	0	0	0	0	0
.............................................................................................................................................................GTCCAGGTCGCTTAAGC............................................................................	17	1	1	1.00	1	1	0	0	0	0	0
..............................................................................................................................................................TCCAGGTCGCTTAAGC............................................................................	16	1	2	0.50	1	1	0	0	0	0	0
..........................................................................................................................................................ATGGTCCAGGTCGCTTAAGC............................................................................	20	3	5	0.40	2	2	0	0	0	0	0
...................GAGGGTGTTTGTTGTCTTCGTTGT...............................................................................................................................................................................................................	24	3	3	0.33	1	0	0	0	1	0	0
...................................................................................................................................................TTGACTGGGTGTCGAGCTC....................................................................................	19	2	3	0.33	1	0	0	0	0	1	0
.....................................................................................................................................................................................................GGCTGCCCACCGCTT......................................	15	1	4	0.25	1	0	0	1	0	0	0
.....................................................................................................................................................................................................................................GATATGTTGTGGGCG......	15	1	4	0.25	1	0	1	0	0	0	0
....................AGGGTGTTTGTTGTCTTCGTTGT...............................................................................................................................................................................................................	23	3	20	0.25	5	0	1	2	1	0	1
............................................................................................................................................................AGTCCAGGTCGCTTAAGC............................................................................	18	2	4	0.25	1	1	0	0	0	0	0
...................................................................................................................................................TTGACTGGATGTCGGGG......................................................................................	17	2	7	0.14	1	0	0	1	0	0	0
.................GCGAAGGTGTTCGGTG.........................................................................................................................................................................................................................	16	1	9	0.11	1	0	0	1	0	0	0
...............................................................................................................................................................CCAGGTCGCTTAAGC............................................................................	15	1	10	0.10	1	1	0	0	0	0	0
.............................................................................................................................................................GTCTAGGTCGCTTAAG.............................................................................	16	1	11	0.09	1	1	0	0	0	0	0
..........................TTCGTTGTCGTCGTTGT...............................................................................................................................................................................................................	17	0	13	0.08	1	0	0	1	0	0	0
..........................................................................................................................................................GCGGTCCAGGTCGCTTAAGC............................................................................	20	3	14	0.07	1	1	0	0	0	0	0
....................................................................................................................................................................................AGGTAACTGAGTCGTTC.....................................................	17	2	14	0.07	1	1	0	0	0	0	0
...........................................................................................................................................................ATGGCGTGGTCGCTTAAGC............................................................................	19	3	17	0.06	1	1	0	0	0	0	0
..................................................................................................................TCGTAGTCGTCGTTGT........................................................................................................................	16	0	20	0.05	1	0	0	1	0	0	0
.....................................................................................................................................................GACTGGTTGTCGCGG......................................................................................	15	1	20	0.05	1	1	0	0	0	0	0
..........................................................................................................................................................................................................................................AGTGTGGGCATCTGTA	16	2	20	0.05	1	0	0	1	0	0	0

Species	Coordinate	ID	Alignment
droSim2	3l:14381542-14381791 +	dsi_12948	CA-CATCATCATTATTATCGCTTCCACAAGCAA------CAGCAGC------AACATC---------------------------------------------AGCAGCAC---CACCAAC---------AACAACAGAGCTGCCTGCGAC---------AGCAGCAAAGACAATTGCAATGGGAGCAGCAGCAGCATCAGCAGC------------------------------AACA---------------------TCAGCAGCTGCAACATCAACTGACCAACAGCTC---CAGCGAATTCGATGAGTTCCATTGGCCCAGCAAGCAGACG---------GGTGGCGAAAA-----------------------------TCTG------------------GGTGGCAAAATCTATATAACACCCGCAGACAT
droSec2	scaffold_0:6853514-6853763 +		CA-CATCATCAATATTATCGCTTCCACAAGCAA------CAGCAGC------AACATC---------------------------------------------AGCAGCAC---CACCAAC---------AACAACAGAGCTGCCTGCGAC---------AGCAGCAGAGACAATTGCAATGGGAGCAGCAGCAGCATCAGCAGC------------------------------AACA---------------------TCAGCAGCTGCAACATCAACTGACCAACAGCTC---CAGCGAATTCGATGAGTTCCATTGGCCCAGCAAGCAGACG---------GGTGGCGAAAA-----------------------------TCTG------------------GGTGGCAAAATCTATATAACACCCGCAGACAT
dm3	chr3L:14732566-14732806 +		CA-CATCATCAATATTATCGCTTCCACAAGCAA------CAGCAGC------AGCAAC------------------------------A------------TCAGCATCAC---CACCAAC---------AACAACAGAGCTGCCTGCGAC---------AGCAGCAAAGACAATTGCAATGGGAGCAGCAGCAGCATCAG---------------------------------------------------------------CAGCTGCAACATCAACTGACCAACAGCTC---CAGCGAATTCGATGAGTTCCATTGGCCCAGCAAGCAGACG---------GGTGGCGAAAA-----------------------------TCTG------------------GGTGGCAAAATCTATATAACACCCGCAGACAT
droEre2	scaffold_4784:14698826-14699090 +		CA-CATCATCAATATTATCGCTTCCACAAGCAG------CAGCAGC------AGCAGCAAC---------------------------A------------TCAGCAACAC---CACCAGC---------AACAACAGAGCTGCCTGCGAC---------AGCAGCAAAGACAATTGCAGTGGGAGCAGCAGCAGCATCAGCAG---------------------CAGCAGCAACAACA---------------------CCAACAGCTGCAACATCAACTGACCAACAGCTC---CAGCGAGTTCGATGAGTTCCATTGGCCCAGCAAGCAGACG---------GGCGGCGAAAA-----------------------------TCTG------------------GGTGGCAAAATCTATATAACACCCGCAGACAT
droYak3	3L:14819567-14819846 +		CA-CATCATCAATATTATCGCTTCCACAAGCAG------CAGCAAC------TGCAGC---AAC------AGCAGCA---------ACA------------TCAGCAACAC---CACCAAC---------AACAACAGAGCTGCCTGCGAC---------AGCAGCAAAGACAATTGCAGTGGGAGCAGCAGCAGCAGCAG------------------------CATC------------AGCAGCTTCAGCAGCAACATCAGCAGCTGCAACATCAACTGACCAACAGCTC---CAGCGAATTCGATGAGTTCCATTGGCCCAGCAAGCAGACG---------GGTGGCGAAAA-----------------------------TCTG------------------GGTGGCAAAATCTATATAACACCCGCAGACAT
droEug1	scf7180000409456:981783-982047 +		CA-CATCATCAATATTATCGCTTCCACAAGCAA------CAGCAGC------AGCAACAGCAACAGCAACGC------------------------------------CAC---CAGCAGC---------AACAACAAAGCTGCCTGCGAC---------AGCAGCAAAGACAATTGCAATGGGAACAGCAGCAGCAGCAG------------------------CATCAGCAGCAACA---------------------GCAACAGCTGCAACATCAACTGACCAACAGCTC---TAGCGAATTTGATGAGTTCCATTGGCCCAGCAAGCAGACG---------GGCGGTGAAAA-----------------------------TCTG------------------GGTGGTAAAATCTATATAACACCCGCAGACAT
droBia1	scf7180000302428:5152153-5152456 -		CA-CATCATCAATATTATCGCTTCCACAAGCAACAG---CAGCAAC---TCCAACAGC---------------AGCAACATCAGCAGCAGCA---------TCAGCAACAC---CAGCAGC---------AACAACAAAGCTGCCTGCGAC---------AGCAGCAAAGACAATTGCAGTGGGAGCAGCAGCAACATCAGCAGCAG------------------CAGCAACACC------AGCAGCTGCAACAGCAACACCAGCAGCTGCAACACCAACTGACCAACAGCTC---AAGCGAATTTGATGAGTTCCATTGGCCCAGCAAGCAGGCG---------GGCGGCGACAA-----------------------------TATG------------------GGTGGCAAAATCTATATAACGCCCGCAGACAT
droTak1	scf7180000415135:440553-440823 +		CA-CATCATCAATATTATCGCTTCCACAAGCAA------CAGCAGCAGCAACATCGGC---AAC---AA---CAGCA---------ACA------------TCAGCAACAC---CAGCAGC---------AACAACAAAGCTGCCTGCGAC---------AGCAGCAAAGACAATTGCAGTGGGAACAGCAGCAGCAACAGCAGC------------------------------AACA---------------------CCAACAGCTGCAACACCAACTGACCAACAGCTC---CAGCGAATTTGATGAGTTCCATTGGCCTAGCAAGCAGACG---------GGTGGCGAGAA-----------------------------TCTG------------------GGTGGTAAAATCTATATAACGCCCGCAGACAT
droEle1	scf7180000491199:1900345-1900597 +		CA-CATCATCAATATTATCGCTACCACAAGCAG------CAACAGC------AACAGC---AA------------------------------------------------------CAGC---------AACAACAAAGCTGCCTGCGAC---------AGCAGCAAAGACAATTGCAGTGGGAACAGCAGCAGCAGCAG------------------------CAGCAACA---------------ACACCAGCAACACCAACAACTGCAACACCAACTGACCAACAGCTC---CAGCGAGTTTGACGAGTTCCACTGGCCCAGCAAGCAAACT---------GGTGGCGAAAA-----------------------------CCTG------------------GGTGGGAAAATCTATATAACACCCGCAGACAT
droRho1	scf7180000779704:4298-4547 -		CA-CATCATCAATATTATCGCTACCACAAGCAG------CAACAGC------AACAGCAGCAA------------------------------------------------------CAGC---------AGCAACAAAGCTGCCTGCGAC---------AGCAGCAAAGACAATTGCAGTGGGAGCAACAGCAACAGCAG------------------------CAGCAACAGCAACA---------------------GCAGCAACTGCAACACCAACTGACCAACAGCTC---CAGCGAGTTTGATGAGTTCCACTGGCCCAGCAAACAGACG---------GGAGGCGAAAA-----------------------------TCTG------------------GGTGGGAAGATCTATATAACACCCGCAGACAT
droFic1	scf7180000453807:186526-186817 +		CA-CATCATCAATATTATCGCTACCACAAGCAA------CACCAGCAGCAGCAACAGC---AAC---AA---CAGCA---------ACAGCA---------GCAGCAACTA---CAGCAGC---------AACAACAGAGCTGCCTGCGAC---------AGCAGCAAAGACAATTGCAGTGGGAACAGCAACAGCAACAT------------------------CAGC------------AGCAACAGCAGCAGCAACATCAGCAGCTGCAACACCAACTGACAAACAGCTC---GAGCGAATTTGATGAGTACCACTGGCCGAGCAAGCAGACG---------GGCGGCGAGAG-----------------------------TCTG---------------GGTGGTGGCAAAATCTATATAACACCCGCAGACAT
droKik1	scf7180000302383:878734-878980 +		CA-CATCATCAATATTATCGCTACCACAAGCAA------CAGCAGC------AGCAAC------------------------------A------------GCAG---CAA---CAATTGC---------AACAACAGAGCTGCCTGCGAC---------------AAAGGCAATTGCAGTGGGAGCAACAGCAGCAGCAG---------------------------CAACACCAACA---------------------GCAACAGCTGCAACATCAACTCACCAATAGCTC---CAGCGAGTTCGACGAGTTCCACTGGCCCAGCAAGCAGACG---------GGCGGCGAGAG-----------------------------CCTG------------------GGCGGGAAAATCTATATAACACCCGCAGACAT
droAna3	scaffold_13337:4369036-4369324 -		CA-CATCATCAATATTATCGCTACCACAAGCAA------CACCAGC------AGCAGCAGCAACAGCAACAGCAGCA---------ACA------------GCAACAGCAG---CATCAGCAACAATTGCAACAACAGAGCTACCTGCGAC---------AGCAACAACGGCAATTGCAGTGGGAGCAGCAGCAGCAGCAA------------------------CAGCAACACCAACA---------------------GCAACAGCTTCAACATCAACTAACCAACAGCTC---CAGCGAGTTTGATGAGTTCCACTGGCCCAGCAAGCAGACT---------GGCGGCGAAAC-----------------------------CCTG------------------GGCGGAAAGATCTATATAACCCCCGCCGACAT
droBip1	scf7180000395450:498334-498565 -		CA-CATCATCAATATTATCGCTACCACAAGCAA------CACCAGCAGCAGCAGCAGC---AA------------------------------------------------------CAGC---------AACAACAGAGCTGCCTGCGAC---------AGCAACAAAGACAATTGCAGTGGGAGCAGCAACAG------------------------------------------------------------------CAACAGCTGCAACATCAACTGACCAACAGCTC---CAGCGAGTTTGATGAGTTCCACTGGCCCAGCAAGCAGACG---------GGCGGCGAAAC-----------------------------CCTG------------------GGCGGAAAGATTTATATAACCCCCGCCGACAT
dp5	XR_group6:1016045-1016288 -		CA-CATCATCAATATTATCGCTACCAAAAGCAG------CAGCAGC------AGCAAC------------------------------------------------------------CAC---------AGCAACAAAGCTGCATGCGAC---------AGCAACAGAGACAATTGCAGTGGGAGCAGCAGCAACAGCAG---C------------------------------AACA---------------------GCAACAGCTTCAACACCAACTGGCAAACAGCTC---CAGCGAGTTTGACGAGTTCCATTGGCCCAGCAAGCAGCCGCAGCAGGGAGGCAG-----------------------------------------------CGCCGGCGGAGGGGGCAAAATCTATATAACACCTGCAGACAT
droPer2	scaffold_12:1694955-1695204 -		CA-CATCATCAATATTATCGCTACCAAAAGCAG------CAGCAGC------AGCAGCAGCAA------------------------------------------------------CCAC---------AGCAACAAAGCTGCATGCGAC---------AGCAACAGAGACAATTGCAGTGGGAGCAGCAGCAGCAGCAG---C------------------------------AACA---------------------GCAACAGCTTCAACACCAACTGGCAAACAGCTC---CAGCGAGTTTGACGAGTTCCATTGGCCCAGCAAGCAGCCGCAGCAGGGAGGCAG-----------------------------------------------CGCCGGCGGAGGGGGCAAAATCTATATAACACCTGCAGACAT
droWil2	scf2_1100000003252:4822-5056 -		CAACAACAGCAGCAGCAACAATATCAACAGCAA------CAGCAAC------AACAGC------------------------------AGCAGCAACAATATCAA---------CAGCAAC---------AG------------CAACAAC---------AGCAGCAGGAACAGCAACAACAGCAGCAGCAACAATATCAACAGCAACAGCAACAACAGCAGCAGCAAC------------------------AG--------------------------GAACAACAGCAG---CAGCAA------CAATATCAACAGCAACAGCAACAATATC---------AACAGCAACAG-----------------------------C------------------------A--ACAATATCAACAGCAACAGCAACAAT
droVir3	scaffold_13049:16827434-16827728 +		CA-CATCAGCAGTATTTTCGCTACCACAACCACAAGCACCCACAGCAGCAACAACAGC---AAC------AGCAGCA---------ACA------------GCAGCAACCACAGCAACAAC---------ACCAACAAAGTTGCATGCGGCACATACCACAACAGCA------G------------CAGCAGCA------------------------------------------------------TCGACAACTGATGTGGGAGCAGCAGCAACAACTGGTCAACAGCTC---GAGCGAGTTTGACGAGTTTCACTGGCCGAGCAAGCAGCTGCA--------------ACAGCCGGACGCAGT------------TGGGGCCCTGGGCGG---GGGTGGTGGTGGTGGCAAAATTTATATAACACCCGCAGACAT
droMoj3	scaffold_6680:19866455-19866777 -		C---AACAGCAATATTTTCGCTACCACAAGCAG------CAGCAGC------AGCAGCAGCAACAGCAACAA------------------------------------CAACTGCTACAAC---------AGCCACAAAGTTGCATGCGACACATACCACAGCAGCAACAGC---A---------GCAACAGCAACAACAG------------------------CAGCAACAACAACAACAACAGCTTCGACAGCTGCAGTGGGAGCAGCAACAACAACTGGTCAACAGTTC---GAGCGAGTTTGACGAGTTCCACTGGCCGAGCAAGCAGCTGCA--------------TCAACCGGACGCTGTGGGCACTGTGGCTGGTGCTGTGGGTGG---GGGTGGGGGTGGTGGTAAAATCTATATAACACCCGCAGACAT
droGri2	scaffold_15110:16280544-16280802 -		CG-CATCATCAATATTATCGCTACCACGGCCACAAGCATC---------------------------------------------------------------------------CACAAC---------AGCAACAAAGCTGCATGAGGCACATAC---CACAACAAAAACAA------------CAGCTGCAGCGT------------------------------C------------------------AGCTGCAATGGGAGCAACAACAACAACTGGTCAACAACTCATCGAGCGAGTTCGATGAGTTCCACTGGCCGAGCAAGCAGCTGCA--------------AGAGTCGATCGCTGG------------CGGTGCACTGGGTGGTGGAGCAGCGGGTGGTGGCAAAATCTATATAACACCCGCAGACAT

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droSim2

CA-CATCATCATTATTATCGCTTCCACAAGCAA------CAGCAGC------AACATC---------------------------------------------AGCAGCAC---CACCAAC---------AACAACAGAGCTGCCTGCGAC---------AGCAGCAAAGACAATTGCAATGGGAGCAGCAGCAGCATCAGCAGC------------------------------AACA---------------------TCAGCAGCTGCAACATCAACTGACCAACAGCTC---CAGCGAATTCGATGAGTTCCATTGGCCCAGCAAGCAGACG---------GGTGGCGAAAA-----------------------------TCTG------------------GGTGGCAAAATCTATATAACACCCGCAGACAT	Size	Hit Count	Total Norm	Total	M023 Head	M024 Male-body	M025 Embryo	M053 Female-body	O001 Testis	O002 Head	SRR553485 Ovary	SRR553486 Ovary	SRR553487 Ovary	SRR553488 Ovary	SRR618934 Ovary	V044 Embryo	SRR902008 Ovary	SRR902009 Testis	SRR1275487 Male larvae	SRR1275485 Male prepupae	SRR1275483 Male prepupae
........................................................................................................................................................................................................................................................................................TGACCAACAGCTC---CAGCGAATTCGA...................................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
........................................................................................................................................................................................................GCAGC------------------------------AACA---------------------TCAGCAGCT..........................................................................................................................................................................	18	13	0.08	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0

droSec2

CA-CATCATCAATATTATCGCTTCCACAAGCAA------CAGCAGC------AACATC---------------------------------------------AGCAGCAC---CACCAAC---------AACAACAGAGCTGCCTGCGAC---------AGCAGCAGAGACAATTGCAATGGGAGCAGCAGCAGCATCAGCAGC------------------------------AACA---------------------TCAGCAGCTGCAACATCAACTGACCAACAGCTC---CAGCGAATTCGATGAGTTCCATTGGCCCAGCAAGCAGACG---------GGTGGCGAAAA-----------------------------TCTG------------------GGTGGCAAAATCTATATAACACCCGCAGACAT	Size	Hit Count	Total Norm	Total	M054 Female-body	V113 Male-body	V114 Embryo	V115 Head
No Reads

dm3

CA-CATCATCAATATTATCGCTTCCACAAGCAA------CAGCAGC------AGCAAC------------------------------A------------TCAGCATCAC---CACCAAC---------AACAACAGAGCTGCCTGCGAC---------AGCAGCAAAGACAATTGCAATGGGAGCAGCAGCAGCATCAG---------------------------------------------------------------CAGCTGCAACATCAACTGACCAACAGCTC---CAGCGAATTCGATGAGTTCCATTGGCCCAGCAAGCAGACG---------GGTGGCGAAAA-----------------------------TCTG------------------GGTGGCAAAATCTATATAACACCCGCAGACAT	Size	Hit Count	Total Norm	Total	GSM154618 Ovary	GSM154620 Ovary	GSM154621 Ovary	GSM154622 Ovary	GSM180328 Head	GSM180329 Mixed-body	GSM180330 Embryo	GSM180331 Embryo	GSM180332 Embryo	GSM180333 Embryo	GSM180334 Larvae	GSM180335 Disc	GSM180336 Pupae	GSM180337 S2	GSM231091 Ovary	GSM239041 Head	GSM239050 Head	GSM239051 S2	GSM239052 S2	GSM246084 Head	GSM266765 S2	GSM280082 Ovary	GSM280083 Ovary	GSM280084 Ovary	GSM280085 Testis	GSM280086 Ovary	GSM280087 S2-NP	GSM280088 S2-NP	GSM312995 Head	GSM313160 Head	GSM313161 Head	GSM313162 Head	GSM313163 Head	GSM313164 Head	GSM313165 Head	GSM343287 Embryo	GSM379050 Ovary	GSM379051 Ovary	GSM379052 Ovary	GSM379053 Ovary	GSM379054 Ovary	GSM379055 Ovary	GSM379056 Ovary	GSM379057 Ovary	GSM379058 Ovary	GSM379059 Ovary	GSM379060 Ovary	GSM379061 Ovary	GSM379062 Ovary	GSM379063 Ovary	GSM379064 Ovary	GSM379065 Ovary	GSM379066 Ovary	GSM379067 Ovary	GSM424739 S2	GSM424740 S2	GSM424741 S2	GSM467729 Female-body	GSM467730 Female-body	GSM467731 Female-body	M002 CS	M003 Male-body	M004 Male-body	M005 ML-DmD32	M006 ML-DmD32	M029 OSC	M030 OSC	M031 OSC	M032 S2-R+	M033 S2-R+	M034 S2-R+	M035 S2-R+	M036 S2-R+	M037 S2-R+	M038 S2-R+	M039 S2-R+	M048 S2-R+	OSS2 OSS	OSS6 OSS	OSS7 OSS	OSS8 OSS	S1 Head	S10 Embryo	S11 Embryo	S12 Embryo	S13 Embryo	S14 Embryo	S15 S2-GMR	S16 Kc	S17 Larvae	S18 Larvae	S19 Pupae	S2 Head	S20 Pupae	S21 Disc	S22 Head	S23 Female-body	S24 Male-body	S25 Larvae	S26 Larvae	S27 Pupae	S28 Pupae	S29 Head	S3 Male-body	S30 S2-GMR	S31 S2	S32 S2	S33 Kc	S34 Kc	S35 Kc	S4 Female-body	S5 Disc	S6 Embryo	S7 Embryo	S8 S2	S9 Embryo	SRR001337 Head	SRR001338 Head	SRR001339 Head	SRR001340 Head	SRR001341 Head	SRR001342 Head	SRR001343 Head	SRR001344 Head	SRR001345 Head	SRR001346 Head	SRR001347 Head	SRR001348 Head	SRR001349 Head	SRR001664 Head	SRR010951 Ovary	SRR010952 Ovary	SRR010953 Ovary	SRR010954 Ovary	SRR010955 Ovary	SRR010956 Ovary	SRR010957 Ovary	SRR010958 Ovary	SRR010959 Ovary	SRR010960 Ovary	SRR014268 Embryo	SRR014269 Embryo	SRR014270 Embryo	SRR014271 Embryo	SRR014272 Embryo	SRR014273 Ovary	SRR014274 Ovary	SRR014275 Ovary	SRR014276 Ovary	SRR014277 Ovary	SRR014278 Ovary	SRR014279 Ovary	SRR014280 Ovary	SRR014281 Ovary	SRR014282 Ovary	SRR023197 S2	SRR023399 S2	SRR023400 S2	SRR023402 S2	SRR023407 S2	SRR029028 S2	SRR029029 S2	SRR029030 S2	SRR029031 S2	SRR029032 S2	SRR029033 S2	SRR029608 Head	SRR029633 Head	SRR030145 gb3	SRR031692 Head	SRR031693 Head	SRR031694 Head	SRR031696 Head	SRR031697 Head	SRR031698 Head	SRR031699 Head	SRR031700 Head	SRR031701 Head	SRR031702 Head	SRR031703 Head	SRR031704 Head	SRR032092 S2	SRR032093 S2	SRR032094 S2	SRR032095 S2-NP	SRR032096 S2-NP	SRR032152 Head	SRR060643 Testis	SRR060644 Ovary	SRR060645 Testis	SRR060646 Ovary	SRR060647 Ovary	SRR060648 Ovary	SRR060649 Ovary	SRR060650 Testis	SRR060651 Ovary	SRR060652 Testis	SRR060653 Ovary	SRR065151 Ovary	SRR065152 Ovary	SRR065153 Ovary	SRR065154 Ovary	SRR065155 Ovary	SRR065800 Ovary	SRR065801 Ovary	SRR065802 Ovary	SRR065803 Ovary	SRR065804 Ovary	SRR065805 Ovary	SRR065806 Ovary	SRR065807 Ovary	SRR097865 S2-NP	SRR097866 S2-NP	SRR097867 S2-NP	SRR298536 Ovary	SRR298537 Ovary	SRR298711 Ovary	SRR298712 Ovary	SRR317110 Ovary	SRR317111 Ovary	SRR317112 Ovary	SRR317113 Ovary	SRR317114 Ovary	SRR317115 Ovary	SRR317116 Ovary	SRR317117 Ovary	SRR341115 S2	SRR341116 S2	SRR341117 S2	SRR341118 S2	SRR351332 Mixed-body	SRR351333 Mixed-body	T004 OSC	T005 CME-L1	V001 Embryo	V002 Embryo	V003 S2	V006 Female-body	V007 Head	V008 S2	V009 CME-L1	V010 ML-DmD20-C5	V011 Sg4	V012 Male-body	V013 Head	V014 DTT	V015 DreRFHV	V018 Kc167	V019 GM2	V020 S2-R+	V021 ML-DmD21	V022 ML-DmD32	V023 Head	V024 Kc167	V025 S2-R+	V026 1182-2H	V027 ML-DmD21	V028 CME-W1-Cl.8+	V029 ML-DmD9	V030 ML-DmD8	V031 GM2	V032 S1	V033 CME-W1-Cl.8+	V034 ML-DmD16-C3	V035 ML-DmD32	V036 ML-DmD20-C5	V037 S2	V038 S2	V063 Ovary	V0632 Ovary	V064 Ovary	V0642 Ovary	V065 Ovary	V0652 Ovary	V066 Ovary	V0662 Ovary	V067 S2-NP	V073 mbn2	V074 S3	V075 ML-DmBG1-C1	V076 ML-DmBG3-C2	V077 Head	V078 Head	V079 Head	V080 Head	V081 Embryo	V082 Embryo	V083 Male-body	V084 Female-body	V085 CME-W2	V086 Female-body	V088 Ovary	V0882 Ovary	V089 Ovary	V0892 Ovary	V090 Male-body	V091 fGS/OSS	V092 Male-body	V093 Male-body	V094 S2-R+	V095 S2-R+	V096 Ovary	V097 Ovary	V098 Ovary	V125 ML-DmD9	V126 CME-L1	V127 G2	V128 S3	V129 ML-DmBG1-C1	V130 ML-DmBG3-C2	V131 ML-DmD16-C3	V132 ML-DmD32	V133 Sg4	V134 ML-DmD8	V135 CME-W2	V136 Male-body	V137 Head	V138 Male-body	V139 Female-body	V140 Female-body	V141 Female-body	V142 Female-body	V144 OSC	V145 S2	V146 S1	V147 1182-2H	V148 mbn2	GSM1528798 follicle cells
......................................................................................................................................................................AAAGACAATTGCAATGGGAGC............................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
.............................................................................................................................................................................................................................................................................................................................................ACG---------GGTGGCGAAAA-----------------------------TCTG------------------GGTGG...........................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................TGCAATGGGAGCAGCAGCAG....................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0
........................................AGCAGC------AGCAAC------------------------------A------------TCAGCATCA.........................................................................................................................................................................................................................................................................................................................................	22	2	0.50	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................CAATGGGAGCAGCAGCAA....................................................................................................................................................................................................................................................	18	5	0.20	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................AGCAGCAGCAGCATCAG---------------------------------------------------------------C..............................................................................................................................................................................	18	20	0.20	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................AGCAGCAGCATCAG---------------------------------------------------------------CAGC...........................................................................................................................................................................	18	20	0.20	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................AA------CAGCAGC------AGCAAC------------------------------A------------TCAGCA............................................................................................................................................................................................................................................................................................................................................	22	10	0.10	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................CAGCAGC------AGCAAC------------------------------A------------TCAGCA............................................................................................................................................................................................................................................................................................................................................	20	20	0.10	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
...............................AA------CAGCAGC------AGCAAC------------------------------A------------TCAGC.............................................................................................................................................................................................................................................................................................................................................	21	16	0.06	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................GCAGCAGCAGCATCAG---------------------------------------------------------------CAGC...........................................................................................................................................................................	20	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................CAGCAGCAGCATCAG---------------------------------------------------------------CAGC...........................................................................................................................................................................	19	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................AGCAGC------AGCAAC------------------------------A------------TCAGCA............................................................................................................................................................................................................................................................................................................................................	19	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................CAGCAGC------AGCAAC------------------------------A------------TCAGC.............................................................................................................................................................................................................................................................................................................................................	19	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0
................................A------CAGCAGC------AGCAAC------------------------------A------------TCAGC.............................................................................................................................................................................................................................................................................................................................................	20	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
..............................CAA------CAGCAGC------AGCAAC------------------------------A------------T.................................................................................................................................................................................................................................................................................................................................................	18	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droEre2

CA-CATCATCAATATTATCGCTTCCACAAGCAG------CAGCAGC------AGCAGCAAC---------------------------A------------TCAGCAACAC---CACCAGC---------AACAACAGAGCTGCCTGCGAC---------AGCAGCAAAGACAATTGCAGTGGGAGCAGCAGCAGCATCAGCAG---------------------CAGCAGCAACAACA---------------------CCAACAGCTGCAACATCAACTGACCAACAGCTC---CAGCGAGTTCGATGAGTTCCATTGGCCCAGCAAGCAGACG---------GGCGGCGAAAA-----------------------------TCTG------------------GGTGGCAAAATCTATATAACACCCGCAGACAT	Size	Hit Count	Total Norm	Total	M055 Female-body	M057 Embryo	V060 Head	V040 Embryo	V107 Male-body	V108 Head	GSM1528801 follicle cells
.........................................................................................................................................................................................GCAGCAGCAGCATCAGCA............................................................................................................................................................................................................................................	18	20	0.20	4	4	0	0	0	0	0	0
............................AGCAG------CAGCAGC------AGCAGCAAC---------------------------A------------TCAGC.............................................................................................................................................................................................................................................................................................................................................	27	9	0.11	1	0	0	0	0	0	1	0
...........................................................................................................................................................................................AGCAGCAGCATCAGCAG---------------------CA....................................................................................................................................................................................................................	19	20	0.10	2	2	0	0	0	0	0	0
...........................................AGC------AGCAGCAAC---------------------------A------------TCAGC.............................................................................................................................................................................................................................................................................................................................................	18	20	0.10	2	0	1	0	0	0	1	0
...................................................................................................................................................................................................CATCAGCAG---------------------CAGCAGCAACA...........................................................................................................................................................................................................	20	20	0.10	2	1	1	0	0	0	0	0
............................................................................................................................................................................................GCAGCAGCATCAGCAG---------------------CAGC..................................................................................................................................................................................................................	20	20	0.10	2	0	0	0	0	0	2	0
...........................................AGC------AGCAGCAAC---------------------------A------------TCAGCA............................................................................................................................................................................................................................................................................................................................................	19	20	0.10	2	2	0	0	0	0	0	0
.........................................................................................................................................................................................GCAGCAGCAGCATCAGCAG---------------------CA....................................................................................................................................................................................................................	21	20	0.10	2	2	0	0	0	0	0	0
........................................................................................................................................................................................AGCAGCAGCAGCATCAGCAG---------------------CA....................................................................................................................................................................................................................	22	20	0.10	2	0	0	0	0	1	1	0
....................................................................................................................................................................................................ATCAGCAG---------------------CAGCAGCAACAAC.........................................................................................................................................................................................................	21	13	0.08	1	0	1	0	0	0	0	0
............................................................................................................................................................................................GCAGCAGCATCAGCAG---------------------CAGCAGC...............................................................................................................................................................................................................	23	20	0.05	1	0	1	0	0	0	0	0
.......................................................................................................................................................................................................AGCAG---------------------CAGCAGCAACAACA---------------------...................................................................................................................................................................................	19	20	0.05	1	0	0	0	0	0	1	0
...............................................................................................................................................................................................GCAGCATCAGCAG---------------------CAGCAGCA..............................................................................................................................................................................................................	21	20	0.05	1	0	0	0	0	1	0	0
........................................AGCAGC------AGCAGCAAC---------------------------A------------TCAGCA............................................................................................................................................................................................................................................................................................................................................	22	20	0.05	1	1	0	0	0	0	0	0
...........................................................................................................................................................................................AGCAGCAGCATCAGCAG---------------------CAG...................................................................................................................................................................................................................	20	20	0.05	1	1	0	0	0	0	0	0
.......................................CAGCAGC------AGCAGCAAC---------------------------A------------TCAGC.............................................................................................................................................................................................................................................................................................................................................	22	20	0.05	1	0	0	0	0	0	1	0
.............................................................................................................................................................................................CAGCAGCATCAGCAG---------------------CAGCAGC...............................................................................................................................................................................................................	22	20	0.05	1	0	0	0	0	0	1	0
............................................................................................................................................................................................GCAGCAGCATCAGCAG---------------------CAG...................................................................................................................................................................................................................	19	20	0.05	1	1	0	0	0	0	0	0
.......................................................................................................................................................................................................AGCAG---------------------CAGCAGCAACAAC.........................................................................................................................................................................................................	18	20	0.05	1	1	0	0	0	0	0	0
.........................................GCAGC------AGCAGCAAC---------------------------A------------TCAGC.............................................................................................................................................................................................................................................................................................................................................	20	20	0.05	1	0	0	0	0	1	0	0
............................................................................................................................................................................................GCAGCAGCATCAGCAG---------------------CAGCA.................................................................................................................................................................................................................	21	20	0.05	1	0	0	0	0	1	0	0
...........................................................................................................................................................................................AGCAGCAGCATCAGCAG---------------------C.....................................................................................................................................................................................................................	18	20	0.05	1	0	0	0	0	0	1	0
.........................................GCAGC------AGCAGCAAC---------------------------A------------TCAGCA............................................................................................................................................................................................................................................................................................................................................	21	20	0.05	1	1	0	0	0	0	0	0
........................................................................................................................................................................................AGCAGCAGCAGCATCAGCAG---------------------CAGCA.................................................................................................................................................................................................................	25	20	0.05	1	0	0	0	0	1	0	0

droYak3

CA-CATCATCAATATTATCGCTTCCACAAGCAG------CAGCAAC------TGCAGC---AAC------AGCAGCA---------ACA------------TCAGCAACAC---CACCAAC---------AACAACAGAGCTGCCTGCGAC---------AGCAGCAAAGACAATTGCAGTGGGAGCAGCAGCAGCAGCAG------------------------CATC------------AGCAGCTTCAGCAGCAACATCAGCAGCTGCAACATCAACTGACCAACAGCTC---CAGCGAATTCGATGAGTTCCATTGGCCCAGCAAGCAGACG---------GGTGGCGAAAA-----------------------------TCTG------------------GGTGGCAAAATCTATATAACACCCGCAGACAT	Size	Hit Count	Total Norm	Total	M026 Head	M043 Female-body	M056 Embryo	V046 Embryo	V052 Head	V058 Head	V120 Male-body	SRR1275488 Male larvae	SRR1275486 Male prepupae	SRR1275484 Male prepupae	GSM1528802 follicle cells
.................................................................................................................................................................................CAGTGGGAGCAGCAGCAGC...................................................................................................................................................................................................................................................	19	3	0.33	1	0	1	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................CAGCAGCAGCAGCAG------------------------CATC------------AGC...................................................................................................................................................................................................	22	20	0.10	2	0	0	2	0	0	0	0	0	0	0	0
............................AGCAG------CAGCAAC------TGCAGC---A.........................................................................................................................................................................................................................................................................................................................................................................................	19	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................CAGCAGCAGCAGCAG------------------------CATC------------A.....................................................................................................................................................................................................	20	20	0.05	1	0	0	0	0	0	1	0	0	0	0	0
......................................................................................................................................................................................GGAGCAGCAGCAGCAGCAG------------------------CA....................................................................................................................................................................................................................	21	20	0.05	1	0	0	0	0	0	0	1	0	0	0	0

droEug1

CA-CATCATCAATATTATCGCTTCCACAAGCAA------CAGCAGC------AGCAACAGCAACAGCAACGC------------------------------------CAC---CAGCAGC---------AACAACAAAGCTGCCTGCGAC---------AGCAGCAAAGACAATTGCAATGGGAACAGCAGCAGCAGCAG------------------------CATCAGCAGCAACA---------------------GCAACAGCTGCAACATCAACTGACCAACAGCTC---TAGCGAATTTGATGAGTTCCATTGGCCCAGCAAGCAGACG---------GGCGGTGAAAA-----------------------------TCTG------------------GGTGGTAAAATCTATATAACACCCGCAGACAT	Size	Hit Count	Total Norm	Total
No Reads

droBia1

CA-CATCATCAATATTATCGCTTCCACAAGCAACAG---CAGCAAC---TCCAACAGC---------------AGCAACATCAGCAGCAGCA---------TCAGCAACAC---CAGCAGC---------AACAACAAAGCTGCCTGCGAC---------AGCAGCAAAGACAATTGCAGTGGGAGCAGCAGCAACATCAGCAGCAG------------------CAGCAACACC------AGCAGCTGCAACAGCAACACCAGCAGCTGCAACACCAACTGACCAACAGCTC---AAGCGAATTTGATGAGTTCCATTGGCCCAGCAAGCAGGCG---------GGCGGCGACAA-----------------------------TATG------------------GGTGGCAAAATCTATATAACGCCCGCAGACAT	Size	Hit Count	Total Norm	Total
No Reads

droTak1

CA-CATCATCAATATTATCGCTTCCACAAGCAA------CAGCAGCAGCAACATCGGC---AAC---AA---CAGCA---------ACA------------TCAGCAACAC---CAGCAGC---------AACAACAAAGCTGCCTGCGAC---------AGCAGCAAAGACAATTGCAGTGGGAACAGCAGCAGCAACAGCAGC------------------------------AACA---------------------CCAACAGCTGCAACACCAACTGACCAACAGCTC---CAGCGAATTTGATGAGTTCCATTGGCCTAGCAAGCAGACG---------GGTGGCGAGAA-----------------------------TCTG------------------GGTGGTAAAATCTATATAACGCCCGCAGACAT	Size	Hit Count	Total Norm	Total
No Reads

droEle1

CA-CATCATCAATATTATCGCTACCACAAGCAG------CAACAGC------AACAGC---AA------------------------------------------------------CAGC---------AACAACAAAGCTGCCTGCGAC---------AGCAGCAAAGACAATTGCAGTGGGAACAGCAGCAGCAGCAG------------------------CAGCAACA---------------ACACCAGCAACACCAACAACTGCAACACCAACTGACCAACAGCTC---CAGCGAGTTTGACGAGTTCCACTGGCCCAGCAAGCAAACT---------GGTGGCGAAAA-----------------------------CCTG------------------GGTGGGAAAATCTATATAACACCCGCAGACAT	Size	Hit Count	Total Norm	Total
No Reads

droRho1

CA-CATCATCAATATTATCGCTACCACAAGCAG------CAACAGC------AACAGCAGCAA------------------------------------------------------CAGC---------AGCAACAAAGCTGCCTGCGAC---------AGCAGCAAAGACAATTGCAGTGGGAGCAACAGCAACAGCAG------------------------CAGCAACAGCAACA---------------------GCAGCAACTGCAACACCAACTGACCAACAGCTC---CAGCGAGTTTGATGAGTTCCACTGGCCCAGCAAACAGACG---------GGAGGCGAAAA-----------------------------TCTG------------------GGTGGGAAGATCTATATAACACCCGCAGACAT	Size	Hit Count	Total Norm	Total
No Reads

droFic1

CA-CATCATCAATATTATCGCTACCACAAGCAA------CACCAGCAGCAGCAACAGC---AAC---AA---CAGCA---------ACAGCA---------GCAGCAACTA---CAGCAGC---------AACAACAGAGCTGCCTGCGAC---------AGCAGCAAAGACAATTGCAGTGGGAACAGCAACAGCAACAT------------------------CAGC------------AGCAACAGCAGCAGCAACATCAGCAGCTGCAACACCAACTGACAAACAGCTC---GAGCGAATTTGATGAGTACCACTGGCCGAGCAAGCAGACG---------GGCGGCGAGAG-----------------------------TCTG---------------GGTGGTGGCAAAATCTATATAACACCCGCAGACAT	Size	Hit Count	Total Norm	Total
No Reads

droKik1

CA-CATCATCAATATTATCGCTACCACAAGCAA------CAGCAGC------AGCAAC------------------------------A------------GCAG---CAA---CAATTGC---------AACAACAGAGCTGCCTGCGAC---------------AAAGGCAATTGCAGTGGGAGCAACAGCAGCAGCAG---------------------------CAACACCAACA---------------------GCAACAGCTGCAACATCAACTCACCAATAGCTC---CAGCGAGTTCGACGAGTTCCACTGGCCCAGCAAGCAGACG---------GGCGGCGAGAG-----------------------------CCTG------------------GGCGGGAAAATCTATATAACACCCGCAGACAT	Size	Hit Count	Total Norm	Total
No Reads

droAna3

CA-CATCATCAATATTATCGCTACCACAAGCAA------CACCAGC------AGCAGCAGCAACAGCAACAGCAGCA---------ACA------------GCAACAGCAG---CATCAGCAACAATTGCAACAACAGAGCTACCTGCGAC---------AGCAACAACGGCAATTGCAGTGGGAGCAGCAGCAGCAGCAA------------------------CAGCAACACCAACA---------------------GCAACAGCTTCAACATCAACTAACCAACAGCTC---CAGCGAGTTTGATGAGTTCCACTGGCCCAGCAAGCAGACT---------GGCGGCGAAAC-----------------------------CCTG------------------GGCGGAAAGATCTATATAACCCCCGCCGACAT	Size	Hit Count	Total Norm	Total	M044 Female-body	M058 Embryo	V039 Embryo	V055 Head	V105 Male-body	V106 Head
...................................................................................................................ATCAGCAACAATTGCAACAACAGAGC..........................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	1	0	0	0	0
.......................................................................................................AACAGCAG---CATCAGCAACA..........................................................................................................................................................................................................................................................................................................................	19	2	0.50	1	0	1	0	0	0	0
......................................................................................................................................................................................GGAGCAGCAGCAGCAGCAA------------------------C.....................................................................................................................................................................................................................	20	10	0.10	1	0	1	0	0	0	0
.....................................................................................................................................................................................GGGAGCAGCAGCAGCAGCA...............................................................................................................................................................................................................................................	19	11	0.09	1	0	1	0	0	0	0
...........................................................................CA---------ACA------------GCAACAGCAG---CAT..................................................................................................................................................................................................................................................................................................................................	18	12	0.08	1	0	0	0	0	0	1
.......................................................................................................................................................................................GAGCAGCAGCAGCAGCAA------------------------C.....................................................................................................................................................................................................................	19	17	0.06	1	0	1	0	0	0	0
.......................................................................GCAGCA---------ACA------------GCAACAGCAG---C....................................................................................................................................................................................................................................................................................................................................	20	20	0.05	1	0	1	0	0	0	0
...........................................AGC------AGCAGCAGCAACAGCAACAGC..............................................................................................................................................................................................................................................................................................................................................................................	24	20	0.05	1	0	0	0	0	0	1
........................................................................................................................................................................................AGCAGCAGCAGCAGCAA------------------------CAGCAAC...............................................................................................................................................................................................................	24	20	0.05	1	1	0	0	0	0	0
.......................................................................GCAGCA---------ACA------------GCAACAGCAG---CA...................................................................................................................................................................................................................................................................................................................................	21	20	0.05	1	0	0	0	0	0	1
..................................................................CAACAGCAGCA---------ACA------------GCAAC.............................................................................................................................................................................................................................................................................................................................................	19	20	0.05	1	0	0	0	0	0	1
.......................................CACCAGC------AGCAGCAGCAAC.......................................................................................................................................................................................................................................................................................................................................................................................	19	20	0.05	1	0	1	0	0	0	0
.............................GCAA------CACCAGC------AGCAGCAGC..........................................................................................................................................................................................................................................................................................................................................................................................	20	20	0.05	1	0	1	0	0	0	0

droBip1

CA-CATCATCAATATTATCGCTACCACAAGCAA------CACCAGCAGCAGCAGCAGC---AA------------------------------------------------------CAGC---------AACAACAGAGCTGCCTGCGAC---------AGCAACAAAGACAATTGCAGTGGGAGCAGCAACAG------------------------------------------------------------------CAACAGCTGCAACATCAACTGACCAACAGCTC---CAGCGAGTTTGATGAGTTCCACTGGCCCAGCAAGCAGACG---------GGCGGCGAAAC-----------------------------CCTG------------------GGCGGAAAGATTTATATAACCCCCGCCGACAT	Size	Hit Count	Total Norm	Total
No Reads

dp5

CA-CATCATCAATATTATCGCTACCAAAAGCAG------CAGCAGC------AGCAAC------------------------------------------------------------CAC---------AGCAACAAAGCTGCATGCGAC---------AGCAACAGAGACAATTGCAGTGGGAGCAGCAGCAACAGCAG---C------------------------------AACA---------------------GCAACAGCTTCAACACCAACTGGCAAACAGCTC---CAGCGAGTTTGACGAGTTCCATTGGCCCAGCAAGCAGCCGCAGCAGGGAGGCAG-----------------------------------------------CGCCGGCGGAGGGGGCAAAATCTATATAACACCTGCAGACAT	Size	Hit Count	Total Norm	Total	M022 Male-body	M040 Female-body	M059 Embryo	M062 Head	V043 Embryo	V051 Head	V112 Male-body	SRR902010 Ovary	SRR902011 Testis	SRR902012 CNS imaginal disc
..............................CAG------CAGCAGC------AGCAAC------------------------------------------------------------CAC---------AGCA.................................................................................................................................................................................................................................................................................................................	23	3	0.33	1	0	0	0	0	1	0	0	0	0	0
..............................CAG------CAGCAGC------AGCAAC------------------------------------------------------------CAC---------.....................................................................................................................................................................................................................................................................................................................	19	18	0.11	2	0	2	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................CAGCAG---C------------------------------AACA---------------------GCAACAGCT..........................................................................................................................................................................	20	13	0.08	1	0	1	0	0	0	0	0	0	0	0

droPer2

CA-CATCATCAATATTATCGCTACCAAAAGCAG------CAGCAGC------AGCAGCAGCAA------------------------------------------------------CCAC---------AGCAACAAAGCTGCATGCGAC---------AGCAACAGAGACAATTGCAGTGGGAGCAGCAGCAGCAGCAG---C------------------------------AACA---------------------GCAACAGCTTCAACACCAACTGGCAAACAGCTC---CAGCGAGTTTGACGAGTTCCATTGGCCCAGCAAGCAGCCGCAGCAGGGAGGCAG-----------------------------------------------CGCCGGCGGAGGGGGCAAAATCTATATAACACCTGCAGACAT	Size	Hit Count	Total Norm	Total	M021 Embryo	M042 Female-body	V042 Embryo	V050 Head	V057 Head	V111 Male-body
No Reads

droWil2

CAACAACAGCAGCAGCAACAATATCAACAGCAA------CAGCAAC------AACAGC------------------------------AGCAGCAACAATATCAA---------CAGCAAC---------AG------------CAACAAC---------AGCAGCAGGAACAGCAACAACAGCAGCAGCAACAATATCAACAGCAACAGCAACAACAGCAGCAGCAAC------------------------AG--------------------------GAACAACAGCAG---CAGCAA------CAATATCAACAGCAACAGCAACAATATC---------AACAGCAACAG-----------------------------C------------------------A--ACAATATCAACAGCAACAGCAACAAT	Size	Hit Count	Total Norm	Total	M020 Head	M045 Female-body	V117 Male-body	V118 Embryo	V119 Head
...................................................................................................................................................CAAC---------AGCAGCAGGAACAGCAACAAC..................................................................................................................................................................................................................................................................	25	3	0.67	2	0	0	0	2	0
...................AATATCAACAGCAA------CAGCAAC------AA.................................................................................................................................................................................................................................................................................................................................................................................................	23	20	0.60	12	0	12	0	0	0
..........................................................................................................................................................................................................................................................................................................................................AATATC---------AACAGCAACAG-----------------------------C------------------------A--ACAA......................	23	20	0.60	12	0	12	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................................................AATATCAACAGCAACAGCAACAA.	23	20	0.60	12	0	12	0	0	0
.................................................................................................................................................................................................AATATCAACAGCAACAGCAACA................................................................................................................................................................................................................................	22	20	0.45	9	0	9	0	0	0
.....................................................................................................................................................................................................................................................................................................................AATATCAACAGCAACAGCAACA............................................................................................................	22	20	0.45	9	0	9	0	0	0
.................................................................................................AATATCAA---------CAGCAAC---------AG------------CAACA..................................................................................................................................................................................................................................................................................................	22	20	0.45	9	0	9	0	0	0
.................................................................................................................................................................................................AATATCAACAGCAACAGCAACAACAGC...........................................................................................................................................................................................................................	27	20	0.25	5	0	5	0	0	0
...................AATATCAACAGCAA------CAGCAAC------AACAGC------------------------------...............................................................................................................................................................................................................................................................................................................................................................	27	20	0.25	5	0	5	0	0	0
...................AATATCAACAGCAA------CAGCAAC------AAC................................................................................................................................................................................................................................................................................................................................................................................................	24	20	0.25	5	0	5	0	0	0
.................................................................................................................................................AACAAC---------AGCAGCAGGAACAGCAACA....................................................................................................................................................................................................................................................................	25	4	0.25	1	0	1	0	0	0
.................................................................................................AATATCAA---------CAGCAAC---------AG------------CAACAAC---------AGC....................................................................................................................................................................................................................................................................................	27	20	0.25	5	0	5	0	0	0
.................................................................................................................................................................................................AATATCAACAGCAACAGCAACAAC..............................................................................................................................................................................................................................	24	20	0.25	5	0	5	0	0	0
..............................................................................................................................................................................................................................................................................................................................................TC---------AACAGCAACAG-----------------------------C------------------------A--ACAATATCAA................	25	4	0.25	1	0	1	0	0	0
.........................................................................................................................................................................................................................................................................................................................TCAACAGCAACAGCAACAATATC---------AA............................................................................................	25	4	0.25	1	0	1	0	0	0
.................................................................................................AATATCAA---------CAGCAAC---------AG------------CAACAAC---------.......................................................................................................................................................................................................................................................................................	24	20	0.25	5	0	5	0	0	0
..................................................................................................................................AG------------CAACAAC---------AGCAGCAGGAACAGCA.......................................................................................................................................................................................................................................................................	25	5	0.20	1	0	1	0	0	0
.................................................................................................AATATCAA---------CAGCAAC---------AG------------CAACAAC---------AG.....................................................................................................................................................................................................................................................................................	26	20	0.20	4	0	3	0	1	0
.................................................................................................................................................................................................AATATCAACAGCAACAGCAACAACAG............................................................................................................................................................................................................................	26	20	0.20	4	0	3	0	1	0
.AACAACAGCAGCAGCAACA...................................................................................................................................................................................................................................................................................................................................................................................................................................	19	20	0.20	4	0	0	0	4	0
.................................................................................................................................................................................................AATATCAACAGCAACAGCAACAACA.............................................................................................................................................................................................................................	25	20	0.15	3	0	3	0	0	0
.................................................................................................AATATCAA---------CAGCAAC---------AG------------CAACAAC---------A......................................................................................................................................................................................................................................................................................	25	20	0.15	3	0	3	0	0	0
...................AATATCAACAGCAA------CAGCAAC------AACA...............................................................................................................................................................................................................................................................................................................................................................................................	25	20	0.15	3	0	3	0	0	0
.......................................................................................................................AC---------AG------------CAACAAC---------AGCAGCAGG..............................................................................................................................................................................................................................................................................	20	8	0.13	1	0	0	0	1	0
..............................................................................................................................................................................................................................................................................................................................AGCAACAGCAACAATATC---------AACAGCA.......................................................................................	25	9	0.11	1	0	1	0	0	0
............................................................................................................................................................................................................................................................................................................................................................AGCAACAG-----------------------------C------------------------A--ACAATATCAACAGCA...........	25	9	0.11	1	0	1	0	0	0
.................................................................................................AATATCAA---------CAGCAAC---------AG------------CAACAAC---------AGCAG..................................................................................................................................................................................................................................................................................	29	19	0.11	2	0	2	0	0	0
.................................................................................................................................................................................................AATATCAACAGCAACAGCAACAACAGCAG.........................................................................................................................................................................................................................	29	19	0.11	2	0	2	0	0	0
...................AATATCAACAGCAA------CAGCAAC------AACAGC------------------------------AG.............................................................................................................................................................................................................................................................................................................................................................	29	19	0.11	2	0	2	0	0	0
.................................................................................................................................................................................................AATATCAACAGCAACAGCAAC.................................................................................................................................................................................................................................	21	20	0.10	2	0	2	0	0	0
..............................................................................................AACAATATCAA---------CAGCAAC---------AG------------CAACA..................................................................................................................................................................................................................................................................................................	25	20	0.10	2	0	2	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................A--ACAATATCAACAGCAACAGCAA....	23	20	0.10	2	0	1	0	1	0
.....................................................................................................................................................................................................................................................................................................................AATATCAACAGCAACAGCAAC.............................................................................................................	21	20	0.10	2	0	2	0	0	0
.................................................................................................AATATCAA---------CAGCAAC---------AG------------CAACAAC---------AGCA...................................................................................................................................................................................................................................................................................	28	20	0.10	2	0	2	0	0	0
.......................................................................................................................................................................................................................................................................................................................................AACAATATC---------AACAGCAACAG-----------------------------C------------------------A--A.........................	23	20	0.10	2	0	1	0	1	0
..........................................................................................................................................................................................................................................................................................................................................AATATC---------AACAGCAACAG-----------------------------C------------------------A--AC........................	21	20	0.10	2	0	2	0	0	0
..............................................................................................................................................................................................AACAATATCAACAGCAACAGCAA..................................................................................................................................................................................................................................	23	20	0.10	2	0	1	0	1	0
....................................................................................................ATCAA---------CAGCAAC---------AG------------CAACAAC---------AGCA...................................................................................................................................................................................................................................................................................	25	20	0.10	2	0	2	0	0	0
.............................................................................................................................................................................................................................................................................................................................CAGCAACAGCAACAATATC---------..............................................................................................	19	10	0.10	1	0	1	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................................................AATATCAACAGCAACAGCAAC...	21	20	0.10	2	0	2	0	0	0
...................AATATCAACAGCAA------CAGCAAC------...................................................................................................................................................................................................................................................................................................................................................................................................	21	20	0.10	2	0	2	0	0	0
..............................................................................................AACAATATCAA---------CAGCAAC---------AG------------CAA....................................................................................................................................................................................................................................................................................................	23	20	0.10	2	0	1	0	1	0
...................AATATCAACAGCAA------CAGCAAC------AACAGC------------------------------A..............................................................................................................................................................................................................................................................................................................................................................	28	20	0.10	2	0	2	0	0	0
................AACAATATCAACAGCAA------CAGCAA..........................................................................................................................................................................................................................................................................................................................................................................................................	23	20	0.10	2	0	1	0	1	0
............................................................................................................................................................................................................................................................................................................AA------CAATATCAACAGCAACAGCAACA............................................................................................................	25	20	0.10	2	0	2	0	0	0
.................................................................................................AATATCAA---------CAGCAAC---------AG------------CAAC...................................................................................................................................................................................................................................................................................................	21	20	0.10	2	0	2	0	0	0
....................................................................................................ATCAA---------CAGCAAC---------AG------------CAACAAC---------AG.....................................................................................................................................................................................................................................................................................	23	20	0.10	2	0	2	0	0	0
....................................................................................................................................................................................................ATCAACAGCAACAGCAACAACAG............................................................................................................................................................................................................................	23	20	0.10	2	0	2	0	0	0
.................................................................................................................................................................................................AATATCAACAGCAACAGCAACAACAGCA..........................................................................................................................................................................................................................	28	20	0.10	2	0	2	0	0	0
......................ATCAACAGCAA------CAGCAAC------AACAG..............................................................................................................................................................................................................................................................................................................................................................................................	23	20	0.10	2	0	2	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................CAGCAACAG-----------------------------C------------------------A--ACAATATC..................	19	10	0.10	1	0	1	0	0	0
....................................................................................................................................................................................................ATCAACAGCAACAGCAACAACAGCA..........................................................................................................................................................................................................................	25	20	0.10	2	0	2	0	0	0
............................................................................................................................................................................................................................................................................................................AA------CAATATCAACAGCAACAGCAA..............................................................................................................	23	20	0.10	2	0	1	0	1	0
..............................................................................................................................................................................................AACAATATCAACAGCAACAGCAACA................................................................................................................................................................................................................................	25	20	0.10	2	0	2	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................AACAG-----------------------------C------------------------A--ACAATATCAACAGC............	21	11	0.09	1	0	1	0	0	0
.................................................................................................................................................................................................................................................................................................................................AACAGCAACAATATC---------AACAGC........................................................................................	21	11	0.09	1	0	1	0	0	0
................................................................................................................................................................AGCAGCAGGAACAGCAACA....................................................................................................................................................................................................................................................................	19	12	0.08	1	0	0	0	1	0
....................................................AACAGC------------------------------AGCAGCAACAATATCAA---------CAG..................................................................................................................................................................................................................................................................................................................................	26	16	0.06	1	0	0	0	1	0
.............................................................................................................................................................................................................................................................................................AACAGCAG---CAGCAA------CAATATCAACAG.......................................................................................................................	26	16	0.06	1	0	0	0	1	0
....AACAGCAGCAGCAACAATATCAACAG.........................................................................................................................................................................................................................................................................................................................................................................................................................	26	16	0.06	1	0	0	0	1	0
..................................................................................................................................................................................AACAGCAGCAGCAACAATATCAACAG...........................................................................................................................................................................................................................................	26	16	0.06	1	0	0	0	1	0
.....ACAGCAGCAGCAACAATATCAAC...........................................................................................................................................................................................................................................................................................................................................................................................................................	23	17	0.06	1	0	1	0	0	0
.....................................................ACAGC------------------------------AGCAGCAACAATATCAA---------C....................................................................................................................................................................................................................................................................................................................................	23	17	0.06	1	0	1	0	0	0
...................................................................................................................................................................................ACAGCAGCAGCAACAATATCAAC.............................................................................................................................................................................................................................................	23	17	0.06	1	0	1	0	0	0
..................................................................................................................................AG------------CAACAAC---------AGCAGCAGG..............................................................................................................................................................................................................................................................................	18	17	0.06	1	0	0	0	1	0
..............................................................................................................................................................................................................................................................................................ACAGCAG---CAGCAA------CAATATCAAC.........................................................................................................................	23	17	0.06	1	0	1	0	0	0
....................................................................................................ATCAA---------CAGCAAC---------AG------------CAACAAC---------AGCAGCAG...............................................................................................................................................................................................................................................................................	29	18	0.06	1	0	1	0	0	0
....................................................................................................................................................................................................ATCAACAGCAACAGCAACAACAGCAGCAG......................................................................................................................................................................................................................	29	18	0.06	1	0	1	0	0	0
.........CAGCAGCAACAATATCAACAGCAA------................................................................................................................................................................................................................................................................................................................................................................................................................	24	18	0.06	1	0	1	0	0	0
..................................................................................................................................................................................................................................................................................................CAG---CAGCAA------CAATATCAACAGCAA....................................................................................................................	24	18	0.06	1	0	1	0	0	0
......................ATCAACAGCAA------CAGCAAC------AACAGC------------------------------AGCAG..........................................................................................................................................................................................................................................................................................................................................................	29	18	0.06	1	0	1	0	0	0
.......................................................................................................................................................................................CAGCAGCAACAATATCAACAGCAA........................................................................................................................................................................................................................................	24	18	0.06	1	0	1	0	0	0
.........................................................C------------------------------AGCAGCAACAATATCAA---------CAGCAA...............................................................................................................................................................................................................................................................................................................................	24	18	0.06	1	0	1	0	0	0
...................................................................................................TATCAA---------CAGCAAC---------AG------------CAACAAC---------AGCAG..................................................................................................................................................................................................................................................................................	27	19	0.05	1	0	1	0	0	0
..........AGCAGCAACAATATCAACAG.........................................................................................................................................................................................................................................................................................................................................................................................................................	20	19	0.05	1	0	1	0	0	0
...................................................................................................................................................................................................TATCAACAGCAACAGCAACAACAGCAG.........................................................................................................................................................................................................................	27	19	0.05	1	0	1	0	0	0
........................................................................................AGCAGCAACAATATCAA---------CAG..................................................................................................................................................................................................................................................................................................................................	20	19	0.05	1	0	1	0	0	0
........................................................................................................................................................................................AGCAGCAACAATATCAACAG...........................................................................................................................................................................................................................................	20	19	0.05	1	0	1	0	0	0
...................................................................................................................................................................................................................................................................................................AG---CAGCAA------CAATATCAACAG.......................................................................................................................	20	19	0.05	1	0	1	0	0	0
.....................TATCAACAGCAA------CAGCAAC------AACAGC------------------------------AG.............................................................................................................................................................................................................................................................................................................................................................	27	19	0.05	1	0	1	0	0	0
...........................CAGCAA------CAGCAAC------AACAGC------------------------------AGCAGCAA.......................................................................................................................................................................................................................................................................................................................................................	27	20	0.05	1	0	1	0	0	0
.............................................................................................CAACAATATCAA---------CAGCAAC---------AG------------CAACAA.................................................................................................................................................................................................................................................................................................	27	20	0.05	1	0	1	0	0	0
............................AGCAA------CAGCAAC------AACAGC------------------------------AGCAGCAAA......................................................................................................................................................................................................................................................................................................................................................	27	20	0.05	1	0	1	0	0	0
...................................................................................................................................................................................................TATCAACAGCAACAGCAACAACAGC...........................................................................................................................................................................................................................	25	20	0.05	1	0	1	0	0	0
...................................................................................................TATCAA---------CAGCAAC---------AG------------CAACAAC---------AGC....................................................................................................................................................................................................................................................................................	25	20	0.05	1	0	1	0	0	0
.................................................................................................................................................................................................AATATCAACAGCAACAGCAACAACAGTT..........................................................................................................................................................................................................................	28	20	0.05	1	0	1	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................A--ACAATATCAACAGCAACAGCAACAA.	26	20	0.05	1	0	1	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................C------------------------A--ACAATATCAACAGCAACAGCAACAA.	27	20	0.05	1	0	1	0	0	0
...................................................................................................................................................................................................TATCAACAGCAACAGCAACAACA.............................................................................................................................................................................................................................	23	20	0.05	1	0	1	0	0	0
..............................................................................................................................................................................................AACAATATCAACAGCAACAGCAAC.................................................................................................................................................................................................................................	24	20	0.05	1	0	1	0	0	0
..........................................................................................CAGCAACAATATCAA---------CAGCAAC---------AG------------C......................................................................................................................................................................................................................................................................................................	25	20	0.05	1	0	0	0	1	0
...................AATATCAACAGCAA------CAGCAAC------AACAGT------------------------------T..............................................................................................................................................................................................................................................................................................................................................................	28	20	0.05	1	0	1	0	0	0
...........................CAGCAA------CAGCAAC------AACAGC------------------------------AGCAGC.........................................................................................................................................................................................................................................................................................................................................................	25	20	0.05	1	0	0	0	1	0
................................................................................................CAATATCAA---------CAGCAAC---------AG------------CAACAAC---------.......................................................................................................................................................................................................................................................................................	25	20	0.05	1	0	1	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................A--ACAATATCAACAGCAACAGCA.....	22	20	0.05	1	0	1	0	0	0
........................CAACAGCAA------CAGCAAC------AACAGC------------------------------AGCAGCA........................................................................................................................................................................................................................................................................................................................................................	29	20	0.05	1	0	0	1	0	0
......................................................................................................................................................................................................................................................................................................................................CAACAATATC---------AACAGCAACAG-----------------------------C------------------------A--ACAA......................	27	20	0.05	1	0	1	0	0	0
................................................................................................................................................................................................CAATATCAACAGCAACAGCAACAAC..............................................................................................................................................................................................................................	25	20	0.05	1	0	1	0	0	0
...................AATATCAACAGCAA------CAGCAAC------AACAG..............................................................................................................................................................................................................................................................................................................................................................................................	26	20	0.05	1	0	0	0	1	0
..........................................................................................................................................................................................................AGCAACAGCAACAACAGCAGCAGCAAA------------------------..........................................................................................................................................................................................	27	20	0.05	1	0	1	0	0	0
...............................................................................................ACAATATCAA---------CAGCAAC---------AG------------CAACA..................................................................................................................................................................................................................................................................................................	24	20	0.05	1	0	1	0	0	0
........................................AGCAAC------AACAGC------------------------------AGCAGCAAC......................................................................................................................................................................................................................................................................................................................................................	21	20	0.05	1	0	0	0	1	0
....................ATATCAACAGCAA------CAGCAAC------AAC................................................................................................................................................................................................................................................................................................................................................................................................	23	20	0.05	1	0	1	0	0	0
................................A------CAGCAAC------AACAGC------------------------------AGCAG..........................................................................................................................................................................................................................................................................................................................................................	19	20	0.05	1	0	0	0	1	0
..................................................................................................................................................................................................ATATCAACAGCAACAGCAACAACAGC...........................................................................................................................................................................................................................	26	20	0.05	1	0	1	0	0	0
..................................................................................................ATATCAA---------CAGCAAC---------AG------------CAACAAC---------AGC....................................................................................................................................................................................................................................................................................	26	20	0.05	1	0	1	0	0	0
.......................................................................................................................................................................................................................................................................................................................................AACAATATC---------AACAGCAACAG-----------------------------C------------------------A--..........................	22	20	0.05	1	0	1	0	0	0
........................................................................................................................................................................................................................................................................................................CAGCAA------CAATATCAACAGCAACAGC................................................................................................................	25	20	0.05	1	0	0	0	1	0
............................................................................................................................................................................................................................................................................................................AA------CAATATCAACAGCAACAGCAAC.............................................................................................................	24	20	0.05	1	0	1	0	0	0
..................................................................................................ATATCAA---------CAGCAAC---------AG------------CAACAAC---------.......................................................................................................................................................................................................................................................................................	23	20	0.05	1	0	1	0	0	0
...........................................................................................................................................................................................................................................................................................................CAA------CAATATCAACAGCAACAGCAA..............................................................................................................	24	20	0.05	1	0	1	0	0	0
..............................................................................................................................................................................................................ACAGCAACAACAGCAGCAG......................................................................................................................................................................................................................	19	20	0.05	1	0	0	0	1	0
................................................................................................................................................................................................................AGCAACAACAGCAGCAGCAAC------------------------..........................................................................................................................................................................................	21	20	0.05	1	0	0	0	1	0
............................................................................................................................................................................................................................................................................................................AA------CAATATCAACAGCAACAGCA...............................................................................................................	22	20	0.05	1	0	1	0	0	0
...............................AA------CAGCAAC------AACAGC------------------------------AGCAGCAA.......................................................................................................................................................................................................................................................................................................................................................	23	20	0.05	1	0	1	0	0	0
.............................................................................................................................................................................................CAACAATATCAACAGCAACAGCAACAA...............................................................................................................................................................................................................................	27	20	0.05	1	0	1	0	0	0
................AACAATATCAACAGCAA------CAGCAAC------AA.................................................................................................................................................................................................................................................................................................................................................................................................	26	20	0.05	1	0	1	0	0	0
.............................................................................................................................................................................................................................................................................................................A------CAATATCAACAGCAACAGCAACA............................................................................................................	24	20	0.05	1	0	1	0	0	0
...............CAACAATATCAACAGCAA------CAGCAAC------AA.................................................................................................................................................................................................................................................................................................................................................................................................	27	20	0.05	1	0	1	0	0	0
.................................................................................................AATATCAA---------CAGCAAC---------AG------------CAACAAC---------AGTT...................................................................................................................................................................................................................................................................................	28	20	0.05	1	0	1	0	0	0
.............................................................................................................................................................................................................AACAGCAACAACAGCAGCAGCAA...................................................................................................................................................................................................................	23	20	0.05	1	0	1	0	0	0
.............................................................................................................................................................................................CAACAATATCAACAGCAACAGCAA..................................................................................................................................................................................................................................	24	20	0.05	1	0	1	0	0	0
............CAGCAACAATATCAACAGCAA------CAGC............................................................................................................................................................................................................................................................................................................................................................................................................	25	20	0.05	1	0	0	0	1	0
....................ATATCAACAGCAA------CAGCAAC------AACAGC------------------------------...............................................................................................................................................................................................................................................................................................................................................................	26	20	0.05	1	0	1	0	0	0
.....................TATCAACAGCAA------CAGCAAC------AACA...............................................................................................................................................................................................................................................................................................................................................................................................	23	20	0.05	1	0	1	0	0	0
..........................................................................................................................................................................................CAGCAACAATATCAACAGCAACAGC....................................................................................................................................................................................................................................	25	20	0.05	1	0	0	0	1	0
......................ATCAACAGCAA------CAGCAAC------AACA...............................................................................................................................................................................................................................................................................................................................................................................................	22	20	0.05	1	0	1	0	0	0
...............................................................................................................................................................................................ACAATATCAACAGCAACAGCAACA................................................................................................................................................................................................................................	24	20	0.05	1	0	1	0	0	0
......................................................................................................................................................................................................CAACAGCAACAGCAACAACAGCAGCAGCA....................................................................................................................................................................................................................	29	20	0.05	1	0	0	1	0	0
................AACAATATCAACAGCAA------CAGCA...........................................................................................................................................................................................................................................................................................................................................................................................................	22	20	0.05	1	0	1	0	0	0
.................ACAATATCAACAGCAA------CAGCAAC------A..................................................................................................................................................................................................................................................................................................................................................................................................	24	20	0.05	1	0	1	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................................................ACAATATCAACAGCAACAGCAACA..	24	20	0.05	1	0	1	0	0	0
...........................................................................................................................................................................................................................................................................................................CAA------CAATATCAACAGCAACAGCAACAA...........................................................................................................	27	20	0.05	1	0	1	0	0	0
.........................................................................................................................................................................................................CAGCAACAGCAACAACAGCAGCAGCAA...................................................................................................................................................................................................................	27	20	0.05	1	0	1	0	0	0
...............................AA------CAGCAAC------AACAGC------------------------------AGCAGCA........................................................................................................................................................................................................................................................................................................................................................	22	20	0.05	1	0	1	0	0	0
..............................CAA------CAGCAAC------AACAGC------------------------------AGCAGCAACAA....................................................................................................................................................................................................................................................................................................................................................	27	20	0.05	1	0	0	0	1	0
..............................................................................................................................................................................................AACAATATCAACAGCAACAGCA...................................................................................................................................................................................................................................	22	20	0.05	1	0	1	0	0	0
...................................................................................................................................................................................................................................................................................................................................CAGCAACAATATC---------AACAGCAACAG-----------------------------C------------------------.............................	25	20	0.05	1	0	0	0	1	0
..............................................................................................AACAATATCAA---------CAGCAAC---------AG------------CA.....................................................................................................................................................................................................................................................................................................	22	20	0.05	1	0	1	0	0	0
.........................................................................................................................................................................AACAGCAACAACAGCAGCAGCAACA.....................................................................................................................................................................................................................................................	25	20	0.05	1	0	0	0	1	0
........................................................................................................................................................................................................................................................................................................................................ACAATATC---------AACAGCAACAG-----------------------------C------------------------A--ACA.......................	24	20	0.05	1	0	1	0	0	0
.............................................................................................................................................................................................................AACAGCAACAACAGCAGCAGCA....................................................................................................................................................................................................................	22	20	0.05	1	0	1	0	0	0
.............................................................................................CAACAATATCAA---------CAGCAAC---------AG------------CAA....................................................................................................................................................................................................................................................................................................	24	20	0.05	1	0	1	0	0	0
.........................................................................................................................................................................................................CAGCAACAGCAACAACAGCAGCAGC.....................................................................................................................................................................................................................	25	20	0.05	1	0	0	0	1	0
.....................TATCAACAGCAA------CAGCAAC------AACAGC------------------------------...............................................................................................................................................................................................................................................................................................................................................................	25	20	0.05	1	0	1	0	0	0
.......................................................................................................................................................................................................................................................................................................................................AACAATATC---------AACAGCAACAG-----------------------------C------------------------A--ACAA......................	26	20	0.05	1	0	1	0	0	0
..................CAATATCAACAGCAA------CAGCAAC------AAC................................................................................................................................................................................................................................................................................................................................................................................................	25	20	0.05	1	0	1	0	0	0
.......................................................................................................................AC---------AG------------CAACAAC---------AGCAGCAG...............................................................................................................................................................................................................................................................................	19	20	0.05	1	0	0	0	1	0
.................................................................................................................................................................................................................................................................................................................................................................CAG-----------------------------C------------------------A--ACAATATCAACAGCAACAGC......	25	20	0.05	1	0	0	0	1	0

droVir3

CA-CATCAGCAGTATTTTCGCTACCACAACCACAAGCACCCACAGCAGCAACAACAGC---AAC------AGCAGCA---------ACA------------GCAGCAACCACAGCAACAAC---------ACCAACAAAGTTGCATGCGGCACATACCACAACAGCA------G------------CAGCAGCA------------------------------------------------------TCGACAACTGATGTGGGAGCAGCAGCAACAACTGGTCAACAGCTC---GAGCGAGTTTGACGAGTTTCACTGGCCGAGCAAGCAGCTGCA--------------ACAGCCGGACGCAGT------------TGGGGCCCTGGGCGG---GGGTGGTGGTGGTGGCAAAATTTATATAACACCCGCAGACAT	Size	Hit Count	Total Norm	Total	M027 Male-body	M028 Head	M047 Female-body	M061 Embryo	SRR060654 Ovary	SRR060655 Testis	SRR060656 Ovary	SRR060657 Testis	SRR060658 Ovary	SRR060659 Testis	SRR060660 Ovary	SRR060661 Embryo	SRR060662 Embryo	SRR060663 Embryo	SRR060664 Male-body	SRR060665 Female-body	SRR060666 Male-body	SRR060667 Female-body	SRR060668 Male-body	SRR060669 Female-body	SRR060670 Testis	SRR060671 Male-body	SRR060672 Female-body	SRR060673 Ovary	SRR060674 Ovary	SRR060675 Ovary	SRR060676 Ovary	SRR060677 Ovary	SRR060678 Testis	SRR060679 Testis	SRR060680 Testis	SRR060681 Testis	SRR060682 Embryo	SRR060683 Testis	SRR060684 Embryo	SRR060685 Embryo	SRR060686 Embryo	SRR060687 Embryo	SRR060688 Ovary	SRR060689 Testis	SRR1106712 embryo_0-2h	SRR1106713 embryo_0-2h	SRR1106714 embryo_2-4h	SRR1106715 embryo_4-6h	SRR1106716 embryo_4-6h	SRR1106717 embryo_6-8h	SRR1106718 embryo_6-8h	SRR1106719 embryo_8-10h	SRR1106720 embryo_8-10h	SRR1106721 embryo_10-12h	SRR1106722 embryo_10-12h	SRR1106723 embryo_12-14h	SRR1106724 embryo_12-14h	SRR1106725 embryo_14-16h	SRR1106726 embryo_14-16h	SRR1106727 larvae	SRR1106728 larvae	SRR1106729 mixed whole adult body	SRR1106730 embryo_16-30h	V047 Embryo	V053 Head	V116 Male-body	GSM1528803 follicle cells
............................................................................A---------ACA------------GCAGCAACCACAGCA...................................................................................................................................................................................................................................................................................................................................	19	3	1.00	3	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................ACA------------GCAGCAACCACAGCA...................................................................................................................................................................................................................................................................................................................................	18	6	0.33	2	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................A---------ACA------------GCAGCAACCACAGCAAC.................................................................................................................................................................................................................................................................................................................................	21	3	0.33	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................ACA------------GCAGCAACCACAGCAA..................................................................................................................................................................................................................................................................................................................................	19	4	0.25	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................ACA------------GCAGCAACCACAGCAAC.................................................................................................................................................................................................................................................................................................................................	20	4	0.25	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................CAACAGC---AAC------AGCAGCA---------ACA------------G.................................................................................................................................................................................................................................................................................................................................................	21	20	0.15	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................CAGCAACAACAGC---AAC------AGCAG............................................................................................................................................................................................................................................................................................................................................................................	21	20	0.10	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
.........................................ACAGCAGCAACAACAGC---AAC------A................................................................................................................................................................................................................................................................................................................................................................................	21	20	0.10	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0
............................................GCAGCAACAACAGC---AAC------AGCAGC...........................................................................................................................................................................................................................................................................................................................................................................	23	20	0.10	2	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................GCAGCAACAACAGC---AAC------AGCA.............................................................................................................................................................................................................................................................................................................................................................................	21	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................ACAGCAGCAACAACAGC---AAC------AGCA.............................................................................................................................................................................................................................................................................................................................................................................	24	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................AACAACAGC---AAC------AGCAGCA---------.................................................................................................................................................................................................................................................................................................................................................................	19	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0
..................................................ACAACAGC---AAC------AGCAGCA---------ACA------------..................................................................................................................................................................................................................................................................................................................................................	21	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................CAGCAGCAACAACAGC---AAC------AGCA.............................................................................................................................................................................................................................................................................................................................................................................	23	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................GG---GGGTGGTGGTGGTGGA..........................	18	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0
..............................................AGCAACAACAGC---AAC------AGCAGCA---------.................................................................................................................................................................................................................................................................................................................................................................	22	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................CACAACAGCA------G------------CAGCAGCA------------------------------------------------------...............................................................................................................................................................................................	19	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0
......................................................CAGC---AAC------AGCAGCA---------ACA------------GCA...............................................................................................................................................................................................................................................................................................................................................	20	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................CAACAGC---AAC------AGCAGCA---------ACA------------GCAGC.............................................................................................................................................................................................................................................................................................................................................	25	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................CCACAACAGCA------G------------CAGCAGCA------------------------------------------------------...............................................................................................................................................................................................	20	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droMoj3

C---AACAGCAATATTTTCGCTACCACAAGCAG------CAGCAGC------AGCAGCAGCAACAGCAACAA------------------------------------CAACTGCTACAAC---------AGCCACAAAGTTGCATGCGACACATACCACAGCAGCAACAGC---A---------GCAACAGCAACAACAG------------------------CAGCAACAACAACAACAACAGCTTCGACAGCTGCAGTGGGAGCAGCAACAACAACTGGTCAACAGTTC---GAGCGAGTTTGACGAGTTCCACTGGCCGAGCAAGCAGCTGCA--------------TCAACCGGACGCTGTGGGCACTGTGGCTGGTGCTGTGGGTGG---GGGTGGGGGTGGTGGTAAAATCTATATAACACCCGCAGACAT	Size	Hit Count	Total Norm	Total	M046 Female-body	V041 Embryo	V049 Head	V056 Head	M060 Embryo	V110 Male-body
...............................................................................................................................................................................................................................................................................................................................................................................................GCTGTGGGTGG---GGGTGGGGGTGGT.............................	24	1	1.00	1	0	0	0	0	0	1
....................................................................................................................................................................................................................................................................................................................................................................................................GGGTGG---GGGTGGGGGTGGTGG...........................	21	2	0.50	1	0	0	0	0	1	0
................................................................................................................................................................AGCAGCAACAGC---A---------GCAACAGCAACAACA...............................................................................................................................................................................................................................................	28	20	0.05	1	0	0	0	0	1	0
..................................................................................................................................................................................................ACAACAG------------------------CAGCAACAACAACA........................................................................................................................................................................................................	21	20	0.05	1	0	0	0	0	1	0

droGri2

CG-CATCATCAATATTATCGCTACCACGGCCACAAGCATC---------------------------------------------------------------------------CACAAC---------AGCAACAAAGCTGCATGAGGCACATAC---CACAACAAAAACAA------------CAGCTGCAGCGT------------------------------C------------------------AGCTGCAATGGGAGCAACAACAACAACTGGTCAACAACTCATCGAGCGAGTTCGATGAGTTCCACTGGCCGAGCAAGCAGCTGCA--------------AGAGTCGATCGCTGG------------CGGTGCACTGGGTGGTGGAGCAGCGGGTGGTGGCAAAATCTATATAACACCCGCAGACAT	Size	Hit Count	Total Norm	Total	M041 Female-body	V109 Male-body
No Reads

-8.2	-7.9	-7.7	-7.4

dsi_12948

3l:14381592-14381741 +

Candidate

Unknown

Predicted structure

Flybase annnotation

Repeatable elements

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads