ID:

dsi_12945

 Coordinate:

2r:8257712-8257861 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-8.2 -7.8 -7.7 -7.5

Flybase annnotation

five_prime_UTR [2r_8257648_8257711_+]; exon [2r_8257648_8257711_+]; intron [2r_8257712_8260209_+]

Repeatable elements

NameClassFamilyStrand
AT_richLow_complexityLow_complexity+
mature
star
  1. dsi_12945  2r:8257809-8257823 +
  2. 3r:9960758-9960772 -
  3. node_35612:214-228 -

Sense Strand Reads

##################################################--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
AACTTCAGTGCCACAATAGTGGATATCACATTTAGTAGTTTGTTCCAAAGGTAAAAGACCACAAAAATCGCCGCAAAAAATATATCTAAAAAAAAAATAAAAACTACAGCACAACACACAGTGTAACATTCCAGTTGTTTATATTTATGAATAGTTTGGTTTCCGAGCAGTTCCGGTCGCCACCCTATCGCGTTTCTCAAGTAAATTTTGCAGAAACTATTCGAATAAATATACAGATAAAGAAATAAAA
*****************************************************((..((((........................(((......(((((.((((.((.((((........)))).........)).)))).))))).....)))..))))))**************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total M023
head
 M024
male body		 M025
embryo
 SRR618934
dsim w501 ovaries
 O002
Head
 GSM343915
embryo
 SRR553487
NRT_0-2 hours eggs
 M053
female body
 SRR902009
testis
 SRR902008
ovaries
 SRR553485
Chicharo_3 day-old ovaries
 SRR553486
Makindu_3 day-old ovaries
 SRR553488
RT_0-2 hours eggs
.........................................GTTCCAAAGGTAAAAGAC............................................................................................................................................................................................... 18 0 1 357.00 357 252 72 31 2 0 0 0 0 0 0 0 0 0
........................................TGTTCCAAAGGTAAAAGAC............................................................................................................................................................................................... 19 0 1 60.00 60 51 7 1 0 0 1 0 0 0 0 0 0 0
.......................................TTGTTCCAAAGGTAAAAGAC............................................................................................................................................................................................... 20 0 1 8.00 8 4 2 2 0 0 0 0 0 0 0 0 0 0
......................................TTTGTTCCAAAGGTAAAAGAC............................................................................................................................................................................................... 21 0 1 7.00 7 4 2 1 0 0 0 0 0 0 0 0 0 0
.........................................GTTCCAAAGGGAAAAGAC............................................................................................................................................................................................... 18 1 1 4.00 4 3 0 1 0 0 0 0 0 0 0 0 0 0
.........................................GTTCCAAAGGTAAAAGACC.............................................................................................................................................................................................. 19 0 1 3.00 3 0 0 1 0 1 1 0 0 0 0 0 0 0
.....................................GTTTGTTCCAAAGGTAAAAGAC............................................................................................................................................................................................... 22 0 1 3.00 3 2 1 0 0 0 0 0 0 0 0 0 0 0
....................................AGTTTGTTCCAAAGGTAAAAGAC............................................................................................................................................................................................... 23 0 1 2.00 2 1 1 0 0 0 0 0 0 0 0 0 0 0
.........................................TTTCCAAAGGTAAAAGAC............................................................................................................................................................................................... 18 1 2 2.00 4 3 0 1 0 0 0 0 0 0 0 0 0 0
..............................TTTAGTAGTTTGTTCCAAAG........................................................................................................................................................................................................ 20 0 1 2.00 2 0 2 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................................................TAAATAGACAGATAAAGGAA..... 20 2 2 1.50 3 0 0 0 0 0 0 3 0 0 0 0 0 0
.....................................................AAAGACCACAAAAATCGCCG................................................................................................................................................................................. 20 0 1 1.00 1 0 0 0 0 0 0 0 0 0 1 0 0 0
...........................................TCCAAAGGTAAAAGACCA............................................................................................................................................................................................. 18 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0
.........................................GTTCCAACGGTAAAAGAC............................................................................................................................................................................................... 18 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
...........CACAATAGTGGATAT................................................................................................................................................................................................................................ 15 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................................................TAAATAGACAGATAAAGGAAAAAAA 25 3 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0
......................................TTTGTTCCAAAGGTAAAAGA................................................................................................................................................................................................ 20 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0 0
...................................TAGTTTGTTCCAAAGGTAAAAGAC............................................................................................................................................................................................... 24 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
.................................AGTAGTTTGTTCCAAAGGTAAAAGAC............................................................................................................................................................................................... 26 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
.........................................GCTCCAAAGGTAAAAGAC............................................................................................................................................................................................... 18 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
.........................................GGTCCAAAGGTAAAAGACCAC............................................................................................................................................................................................ 21 1 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0
............ACAATAGTGGATATCA.............................................................................................................................................................................................................................. 16 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0
......................................TTTGTTCCAAAGGTAAAA.................................................................................................................................................................................................. 18 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0
......AGTGCCACAATAGTGGAT.................................................................................................................................................................................................................................. 18 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0
..........................................TTCCAAAGGTAAAAGACC.............................................................................................................................................................................................. 18 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0
........................ATCACATTTAGTAGTTTGT............................................................................................................................................................................................................... 19 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0
..................................GTAGTTTGTTCCAAAGGTAAAAGAC............................................................................................................................................................................................... 25 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0
.........................................GTTCCAAAGGTAAAAGACCAC............................................................................................................................................................................................ 21 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0
........................................TGTTCCAAAGGTAAAAGACC.............................................................................................................................................................................................. 20 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0
.........................................................ACCACAAAAATCGCCGCAAAAAATATA...................................................................................................................................................................... 27 0 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0 0 0
.........................................GTTCCAAAGGAAAAAGAC............................................................................................................................................................................................... 18 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
.....................................GTTTGTTCCAAAGGTAAAAGACC.............................................................................................................................................................................................. 23 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
.........................................GTTCCAAAGGTAAAAGACCACAAAAATCG.................................................................................................................................................................................... 29 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0 0
..............................................................AAAAATCGCCGCAAAAAATA........................................................................................................................................................................ 20 0 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0 0 0
.....................................................AAAGACCACAAAAATCGC................................................................................................................................................................................... 18 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0
.........................................GTTCCAAGGGTAAAAGAC............................................................................................................................................................................................... 18 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................................................TAAATAGACAGATAAAGGAAA.... 21 3 17 0.47 8 0 0 0 0 0 0 2 0 0 0 5 0 1
.........................................GTTCAAAAGGTAAAAGAC............................................................................................................................................................................................... 18 1 3 0.33 1 1 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................TGAATAGTTTGGTTT........................................................................................ 15 0 3 0.33 1 0 0 0 1 0 0 0 0 0 0 0 0 0
.........................................GTTCCAAAGGTAAAAGGC............................................................................................................................................................................................... 18 1 3 0.33 1 1 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................................................AATAAATAGACAGATAAAGGA...... 21 2 3 0.33 1 0 0 0 0 0 0 0 0 0 0 1 0 0
.................................................................................................................................................................................................................................TAAATAGACAGATAAAGGAAAA... 22 3 7 0.29 2 0 0 0 0 0 0 1 0 0 0 1 0 0
...........................................................................................................................................................................TACGGTAGCCACCCTA............................................................... 16 2 20 0.15 3 0 0 0 0 0 0 0 0 0 0 0 3 0
.................................................................................................................................................................................................................................TAAATAGACAGATAAAGGA...... 19 2 7 0.14 1 0 0 0 0 0 0 1 0 0 0 0 0 0
..........................................................................................................................................................................................................AAATATTGCAGAAACT................................ 16 1 16 0.06 1 0 0 0 0 0 0 0 0 0 0 1 0 0
................TAGTGGCTATCACATCT......................................................................................................................................................................................................................... 17 2 18 0.06 1 0 0 0 0 0 0 0 0 0 0 0 1 0
................TAGTGGACATCACAAT.......................................................................................................................................................................................................................... 16 2 20 0.05 1 0 0 0 1 0 0 0 0 0 0 0 0 0
....................................................AAAAGACCTCAAAAA....................................................................................................................................................................................... 15 1 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 1 0
........................................................................................................................................GTTTACATTTATGAATTG................................................................................................ 18 2 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0 0 0
................................................AAGAAAAAGACCACAAAA........................................................................................................................................................................................ 18 2 20 0.05 1 0 0 0 1 0 0 0 0 0 0 0 0 0
................................................................................TATGTCTAAAAAAAAA.......................................................................................................................................................... 16 1 20 0.05 1 0 0 0 0 0 0 0 0 0 0 1 0 0

Anti-sense strand reads

TTGAAGTCACGGTGTTATCACCTATAGTGTAAATCATCAAACAAGGTTTCCATTTTCTGGTGTTTTTAGCGGCGTTTTTTATATAGATTTTTTTTTTATTTTTGATGTCGTGTTGTGTGTCACATTGTAAGGTCAACAAATATAAATACTTATCAAACCAAAGGCTCGTCAAGGCCAGCGGTGGGATAGCGCAAAGAGTTCATTTAAAACGTCTTTGATAAGCTTATTTATATGTCTATTTCTTTATTTT
****************************************************************************************((..((((........................(((......(((((.((((.((.((((........)))).........)).)))).))))).....)))..))))))***************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553485
Chicharo_3 day-old ovaries
 SRR553486
Makindu_3 day-old ovaries
 M023
head
 O001
Testis
 SRR618934
dsim w501 ovaries
 SRR553487
NRT_0-2 hours eggs
..................................................................................................................................................................GGCTCGTCAAGGCCAGCGGTGGGAT............................................................... 25 0 1 1.00 1 0 1 0 0 0 0
...........................................................................................TTTTTTATTTTTGATGTCG............................................................................................................................................ 19 0 1 1.00 1 0 0 0 1 0 0
.................................................................................................................................................................AGGCTCGTCAAGGCCAGCGGTGGGAT............................................................... 26 0 1 1.00 1 0 0 0 0 1 0
..................................................................................................................................................TACTTATCAGACCAAAGGCTC................................................................................... 21 1 1 1.00 1 0 0 1 0 0 0
..........................................................................................TTTTTCTATCTTTGATGTCGTGT......................................................................................................................................... 23 2 1 1.00 1 1 0 0 0 0 0
.............................................................................................................GTGTTGTGTGTCACATTGTAAGGT..................................................................................................................... 24 0 1 1.00 1 1 0 0 0 0 0
....................................TCAAACAAGGTTTCCATTTTCTGGTGT........................................................................................................................................................................................... 27 0 1 1.00 1 0 1 0 0 0 0
.....................................CAAACAAGGTTTCCATTTTCTGGTGT........................................................................................................................................................................................... 26 0 1 1.00 1 1 0 0 0 0 0
............................................................................................ATTTTATTTTCGATGTCGTGT......................................................................................................................................... 21 2 2 0.50 1 0 0 0 0 0 1
........................................................................................TTATTTTTTTTTTTCGATGTCGTGT......................................................................................................................................... 25 3 3 0.33 1 1 0 0 0 0 0
...........................................................................................TTTTTTTTTTTCGATGTCGTGT......................................................................................................................................... 22 2 7 0.14 1 1 0 0 0 0 0
............................................................................................TTTTTTTTTTCGATGTCGTGT......................................................................................................................................... 21 2 7 0.14 1 1 0 0 0 0 0
..................................................................................................................................................................GGCTTGTCAAGGCCCGC....................................................................... 17 2 9 0.11 1 1 0 0 0 0 0
.............................................................................................TTTTTTTTTCGATGTCGTGT......................................................................................................................................... 20 2 10 0.10 1 1 0 0 0 0 0
............................................................................................................................................................................GGCCAGCGGTGGCATT.............................................................. 16 2 20 0.05 1 0 1 0 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim2 2r:8257662-8257911 + dsi_12945 AACTTCAGTGCCACAATAGTGG-AT--ATCACATTTAGTAGTTTGTTCCAAAGGTAAA-AGACCA-CA-------A-AAA--------------------------------------------------TCGCCGCAAAA-A-A----------------TA-T---ATCTAAAAAAAAAATAAAAACTA-------------------------------------------------------------C-------------------------------------------------------------------------------------------------------------------------------------AGC-----------------------------------ACAACA----------------CACA-------------------------------------GTGTAACAT------TCCAGTT-G---TTTATA------------------------TTTATG----------------AATAGTT--TGGTT-------TC-------CG----AGCAGTTCCGGTCG-----CCACCCTATCG---------------------------------------CGT---------TTCTCAAGTAAATTTTGCAG-A---------AACTATTCGAATAAA------TATACAGATAA-------------------A---------------------------GAAAT-AA----AA
droSec2 scaffold_1:5104963-5105210 + AACTTCAGTGCCACAATAGTGG-AT--ATCACATTTAGTAGTTTGTTCCAAAGGTAAA-AGACCA-CA-------A-AAA--------------------------------------------------TCGCCGCAAAA-A-A----------------TA-T---ATCTAAAAAAAC--TAAAAACTA-------------------------------------------------------------C-------------------------------------------------------------------------------------------------------------------------------------AGC-----------------------------------ACAAAA----------------CACA-------------------------------------GTGTAACAT------TCCAGTT-G---CTTATA------------------------TTTATG----------------AATAGTT--TGGTT-------TC-------CG----AGCAGTTCCGGTCG-----CCACCCTATCG---------------------------------------CGT---------TTCTCAAGTAAATTTTGCAG-A---------AACTATTCGAATAAA------TATACAGATAA-------------------A---------------------------GAAAT-AA----AA
dm3 chr2R:7553273-7553535 + AACTTCAGTGCCACAATAGTGG-AT--ATCACATTTAGTAGTTTGTTCCAAAGGTAAA-AGACCA-CA-------A-AAA--------------------------------------------------TCGCCGCAAAA-A-A----------------TA-T---ATCTAAAAAAAA--AAAAAACTAAAAGCGAATATGAAAAG------------------------------------------CAC-------------------------------------------------------------------------------------------------------------------------------------AGC-----------------------------------ACA--------------------ACA-------------------------------------GTGTAACAT------TCCAGTT-G---TTTATA------------------------TTTATG----------------AATAGTT--TGGTT-------TC-------CG----AGCAGTTCCGGTCG-----CCACCCTATCG---------------------------------------CGT---------TTCTTAAGTAAATTTTGCAG-A---------AACTATTCGAATAAA------AATACAGATAA-------------------A---------------------------GAAAT-AA----AA
droEre2 scaffold_4845:18240643-18240878 - AACTTCAGTGCCACAATAGTGG-AT--ATCACATTTAGTAGTTTGTTCCAAAGGTAAA-GGACCA-CA-------A-AAA--------------------------------------------------TCGCCGCAAAT--------------------------------------------------AAAGCGAATAAGAAAAC------------------------------------------TTT------------------------------------------------------------------------------------------------------------------------------------------------------------------------TA--CTACC----------------CAGT-------------------------------------GTGTTACAT------TCCAGTT-G---TTT--A------------------------TTTCTG----------------AATAGTT--TGGTT-------TT-------CG----AGCAGTTCCGGTCG-----CCACCTTATCG---------------------------------------CGT---------TTCTCGAGTAAA-TTTGCAG-A---------AACTATTCGTATAAA------TATGCAGATAA-------------------A---------------------------AAAAT-AA----AA
droYak3 2R:9401220-9401475 - AACTTCAGTGCCACAATAGTGG-AT--ATCACATTTAGTAGTTTGTTCCAAAGGTAAA-AGACCA-TA-------A-AAA--------------------------------------------------TCGCCGCAAAA-A-AAAA-------------TA-T----TTTA------------AAACCGAAAGCGAATAAGAAAAC------------------------------------------TAC------------------------------------------------------------------------------------------------------------------------------------------------------------------------TA--CCACA----------------CACA-------------------------------------GTGTTACAT------TCCAGTT-G---TTT--A------------------------TTTCTG----------------AGTAGTT--TGGTT-------TC-------CG----AGCAGTTCCGGTCG-----CCACCTTATCG---------------------------------------CGT---------TTCTCAAGTAAATTTTGCAG-A---------AACTATTCGAATAAA------TATACAGATAA-------------------AA--------------------------AAAAT-AA----AA
droEug1 scf7180000409462:935839-936122 - AACTTCAGTGCCACAATAGTGG-AT--ATCACATTTAGTAGTTTGTTCCAAAGGTAAA-AAACCA-AA-------A-AAA---------CCAA-------ACAAA------TAAA---------------TCACCGCAAAA-A-TACATATT---------TA-T---ATATA------------AAACTAAAAGCAAATAATAAAA---------------------------------------ACATTTT------------------------------------------------------------------------------------------------AAAATCG--GA----------------------------------------------------------------AAAAAA----------------CACA-------------------------------------GTGTTACAT------TCCAGTT-G---GTT--A------------------------TT-------------A-------ATAGTT--TAGTT-------TC--------GC-TCACAAGTTCCGGTCG-----CCAACTTATCG---------------------------------------CGT---------TTCTTAAGAAAC-TTCAA---AAAAAAAG---ACAACTTAAATAAA------TAAAAAGATAA-------------------A----------------------------AAAC-GA----AA
droBia1 scf7180000302292:330109-330363 + AACTTCAGTGCCACAATAGTGG-AT--ATCACATTTAGTAGTTTGTTGCAAAGGTAAAGAGACCT-CA-------A-GCA--------------------------------------------------TCGCCGCAAAA-A-T----------------TG-T---ATCTC------------AAACTAAAAGCGAAACA-----------------------------T------GGACAAAAAGAGTTT------------------------------------------------------------------------------------------------------------------------------------------------------------------------AA--CCAAA----------------CACA-------------------------------------GTGCTACAT------TCCAGTT-G---GTT--A-------------------TTTA-TT-------------T-------ATAGTTTTTAGTT-------TC-------TG----AGCAGTTCCGGTCG-----CCACCTTATCG---------------------------------------CGT---------TTCTCAAGAAAT-GTTAAAG-A---------AACTACTTAAGTAAA------TAAA--------------------------AA--------------------------AAAAT--C----AA
droTak1 scf7180000415131:173377-173619 - AACTTCAGTGCCACAATAGTGG-AT--ATCACATTTAGTAGTTTGTTCCAAAGGTAAA-AAGACA-CA-------G-AAA--------------------------------------------------TCGCCGCAAAA---A----------------TA-T---ATCTA------------AAACTAAAAGCGAAAA----AA---------------------------------------AGACTTC------------------------------------------------------------------------------------------------------------------------------------------------------------------------AACAAAAAA----------------CACA-------------------------------------GTGTTACACTCGAATTCCAGTT-G---GTT--A------------------------TT-------------T-------TTAGTT--TAGTT-------TC-------CG----AGCAGTTCCGGTCG-----CCACCTTATCG---------------------------------------CGT---------TTCTCAAGAAAT-GTTAAAG-A---------AACTACTTAAGTAAA------TAAA---------------------------------------------------------AA-AA----CA
droEle1 scf7180000491214:3022404-3022642 + AACTTCAGTGCCACAATAGTGG-AT--ATCACATTTAGTAGTTTGTTCAAAAGGTAAAAAGACAA-CA-------AAAAA--------------------------------------------------TCGCCGCAAAA-A-T----------------TT-T---ATCTAA-----------AAACTTAAAGCGAAAAAG------------------------------------------------------------------------------------------------------------------------------------------------------------A----------------------------------------------------------------CCAAAA----------------CACA-------------------------------------GTGTTACAT------TCCAGTTTG---TTT--A------------------------TT-------------T-------ATAGTTT-TAGTT-------TG-------CG----AGCAGTTCCGGTCG-----CCACCTTATCG---------------------------------------CGT---------TTCTCATGAAAT-TTTTAAC-A---------AACTAC----ATTAA------TATAAAG-TAA-------------------A----------------------------AAAA-AA----CA
droRho1 scf7180000778852:4375-4609 - AACTTCAGTGCCACAATAGTGG-AT--ATCACATTTAGTAGTTTGTTCCAAAGGTAAAGAGACCA-TA-------A-AAA--------------------------------------------------TCGCCGCAAA----T----------------TT-T---ATCTAA-----------AAACTAAAAGCGAAAAAG------------------------------------------------------------------------------------------------------------------------------------------------------------A----------------------------------------------------------------CCAAAA----------------CACA-------------------------------------GTGTTACAT------TCCAGTTGG---TTT--A------------------------TT-------------T-------ATAGTTT-TAGTT-------TC-------CG----AGCAGTTCCGGTCG-----CCACTTTATCG---------------------------------------TGT---------TACTCAAGAAAT-TTTTAAC-A---------AACTATACAA----A------A----------ATAAAATAAA----------------------------------------ATAAG----CA
droFic1 scf7180000453948:673376-673616 + AACTTCAGTGCCACAATAGTGGGAT--ATAACATTTAGTAGTTTGTTC-AAAGGTAAA-AAA-CA-CA-------A-GAA--------------------------------------------------TCGCCGCAAA----T----------------TT-T---ATCTGA-----------AAACGAATAGCGAGAA----AAC----------------------AT------A---------ATTTCA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------A--ACGAAA----------------CTCA-------------------------------------GTGTTACAT------TCCAGTT-G---GTT--A------------------------TT-------------T-------ATAATT--TAGTT-------TC-------CG----AACAGTTCCGGTCG-----CTACTTTATCG---------------------------------------CGT---------TTCTTGAAAAAT-TT----G-A---------AACTACTTAAATAAA------TACAAAGATAA-------------------G----------------------------AA---AC----CA
droKik1 scf7180000302386:86543-86856 + TACTTCAGTGCCACAATAGTGG-AT--ATCACATTTAGTAGTTTGTTCAAAAGGTAAA-AAC-TG---------------------------AGAAATTTGCA--GAGAAATAA------AC---GAAATTCACAGCAAAA-------TGTTCG--------------AAATA------------AAACTAA-AGTAAAAAAA------------------------------------------------------------------------------------------------------------------------------------------------------------A---------------------------ACACTCACATTT----------------------A--ACGAAG----------------CTA---------------------------------AAAAAGTGCGGAAT------TCCAGTTTG---GTT--A------------------------TT-------------TATAGTTTATAGTTTTTCGTT-----ATTT-------TCTACAAGCAGTTCCGGTCG-----TAACCTTATCG---------------------------------------CGT---------TTCTCAAGAAAT-------------------------TCGTATAAAAAAATATATACATAT--ATAAAAA------------GAAACCAAATTTAATAATTAA---TAAAAAAGA-AA----AA
droAna3 scaffold_13266:8771726-8772052 + CGTT----TGCCACAATAGTGG-ATATATCACATTTAGTAGTTTGTTCAAAAGGTAAA-AATAAT-AAGAGAACGACAAT------------------TCGCCGAA------A-CTAAAAAA---G-AAACT-ATC------------------------------------------------------AAAAGCGAATAATA---CTTTCAAGAATATTTATTAAAAAATAAAACAA---------TTTTCAAGCAAA--------------------------------------------------------------------------------AAAACTAT-----T--------------------------------CG----------------------------------------AT----------------TTTA-------------------------------------GTGCGAATT------TCTTGTT-AA--TTTTTG------------------------TTTCTGATAAA----C-------ATAGTT--TTGTT-------TCTGATTTCTTGGTAACCAGTTCCGGTCG-----TAACCTTATCG---------------------------------------CGT---------TTCTCCAAATG--TTTGCAA-TAAAAATACAAAATATTCCTACAAA------AATACAAAAAA-----------------------------------------------AAAAC-GA----CA
droBip1 scf7180000395994:61696-62008 - CGTT----TGCCACAATAGTGG-ATATATCACATTTAGTAGTTTGTTCAAAAGGTAAA-AATACT-AA-------G-AGA-C-------------AATACGCCGAA------A-CTAAAAA----GAAAACT-ATTCCAA-AAT-CAACG------AAGAATA-T-------------------------------------------------------TTATTTAA-AAT------A---------TTTTCAAGCAAAT-------------------------------------------------------------------------------AAAACTAT--------------------------------------AG----------------------------------------AT----------------TTTA-------------------------------------GTGCCAAAT------TTTAGTT-AAAGTTTTTG----------------------GTTTTTTGATAAAAAAATAAAG-AAATAGTT--T--TT-------TCTGATTTCTTGGTAACCAGTTCCGGTCG-----TAACCTTATCG---------------------------------------CGAAAAAAACATAT------ATG--TTTGCAA-TAAAAA-G---TATATTTCCAC------------ACAAATA------------------------------------------------AAAAT-AA----AA
dp5 3:4737048-4737395 + TACTTCAGTGCCACACTAGTGG-AT-----ACATTTAGTAGTTTGTTCAAAAGGTAAT-AAT----GGGCGC--------TCTCGTCTCCCGAGCAATTCGCTCAAAGATATAA------ACAGTGAAAACT-ATC-------------AAT---------TT-T---ACAAA------------CAACTGAAGACGACGA-----------------------------------------------------------------------------------------------------------------------------------------------------------------C-------TGAATTTCGATTAAAA----------------------------------------------------------------ATTTTAAAAATAAATATAATTACCGATGTACCGAAAAGTGTA-AAC------TCTTGTT-A---GTT--A------------------------GT-------------T-------ATGTA-------------TTTT-------TGCCCAACCAGTTCCGGTCGGTCCGTAACCTTATCAC-G-T----------------TTTCATGGCGACTTGGCGCGG---------TTCTCAAGAAATTTATGCAG-AAAAAAAGCAAAA------------------A----------ATAAAATAAAACTACAACA-----------------------------AAGC-GAAGCAGC
droPer2 scaffold_2:4929810-4930148 + TACTTCAGTGCCACACTAGTGG-AT-----ACATTTAGTAGTTTGTTCAAAAGGTAAT-AAT----GGGCGC--------TCTCGTCTCCCGAGCAATTCGCTCAAAGATATAA------ACAGTGAAAACT-ATC-------------AAT---------TG-T---AC---------------AAACTGAAAAC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGAATTTCGATTAAAA----------------------------------------------------------------ATTTTAAAAATAAATATAAAAACCGATGTACCGAAAAGTGTA-AAC------TCTTGTT-A---GTT--A------------------------GT-------------T-------ATGTA-------------TTTC-------TGCCCAACCAGTTCCGGTCGGTCCGTAACCTTATCAC-G-T----------------TTTCATGGCGACTTGGCGCGG---------TTCTCAAGAAATTTATGCAG-AAAAAAAGCAAAA------------------A----------ATAAAATAAAACTACAACA-----------------------------AAGC-GAAGCAGC
droWil2 scf2_1100000004558:717536-717589 - TGCTTCAGTGCCACAATAGTGG-AT--ATCACATTTAGTAGTTTGTTAAAAAGGTAA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droVir3 scaffold_12875:12889366-12889745 - TGCTTCAGTGCCACAATAGTGG-AT--ATCACATTTAGTAGTTTGTTGAAAAGGTAAA-ATA-AT-CAGCGA---------A------GCCAA-------GCGAAC------AAGAAATAGC---G-AAACT-ATGCAAA-ACT-ACACGTTCGTTAACAACAAT-----------------------------------AA----------------------------------------------------------TTGAAATATTCAAAAAATTTAACTATTTTTTTTTTGTTTTCTCAAAAATATATTTCACTAAATAAAGACATTAAATTTATAAAA---------------------------------------------------------------------------------CTATT----------------GAAT-------------------------------------GCGTTGACTGTGAATTATTGTT-A---TAT--G------------------------TT-------------T-------ATAGCT--CAGTT-----TTTT-------CGCGCTACAAGTTCCGGTCG-----TAGCCTTATCGGAAATTTCTGTGTCGCGTCGCTT--------------AACTT---------TTCTCAA---ATTTATGCAA-ACAAAA--CAAAA--------------------------------------------------------ATTTCAAAACTACATTTGACAAAAA-CA----AA
droMoj3 scaffold_6496:20152027-20152417 - TGCTTCAGTGCCACAATAGTGG-AT--ATCACATTTAGTAGTTTGTTA-AAAGGTAAA-AAATTATCA---------GCT---TGTCTGTCAA-------GCGAAC------AAGAAATAGC---G-AAACT-ATGCAAA-ATT-ACACGTTCGTTAACAATA-T---ATATA------------TAAC-----------------------------------------AA------A---------TA--TATGTATATAAAAATATTCAAAAA-----------------TTGT------------------------------------------------------------CG-TACTGAATTC----------------AAT----------GAAAAATAAGTTTATAAAAAAA--AAAAAAA----------------AACAATTTTAAA----TATATAATTGTGAAT-----------------------------GTT-A---TAT--ATTGCTGCAAATCCATTGTACATA-GT-------------T-------ATATT-------------TTTT-------CGTGCTACAAGTTCCGGTCG-----TACCCTTATCGA-ATTTAATGTATCGCGTCGTTTTCTTGGTA-TTTTGAGCAA---------AACTCAAGCAAA-TTTTTAA-A---------AACTACATT--------------------TA---------------------------------------------------AA-AA----CA
droGri2 scaffold_15245:7477655-7478019 + TGCTTCAGTA-CACAATAGTGG-AT--ATCACATTTAGTAGTTTGTTCAAAAGGTAAA-ATAATT-CA-------G-CGTTC------GCT-------TCGCACAC------A-GCAAAAGC---G-AAACT-ATGCAAAAACT-ACACGTTCATTAAGAAAA-TAAAATATA------------AAAATAAAAT--------------------------------------------------------------------------TCAA--------------------------------------------TTAAATTAAAA--------------AAATATTAAAATTAAAGATAC-AAATTC----------------AGT-----------------------------------AAAATTGCAAAAATTATTTAGATTCG-------------------------------------TTGCTAT-CGTAAGCTATTGTT-A---TTT--A------------------------TT-------------T-------ATAGTT--CTTTTCATTTTTTT-------CGCGCTCCAAGTTCCGGTCG-----TAGTCTTATAAA-GTTGTGTGTGTCG------------------------CGT---------CGTTTTATATC--TTC---AAC----------ACT-----------------------AACA--------------------------AAATTAAACAATTACATTTGACAATAA-AA----AA

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
AACTTCAGTGCCACAATAGTGG-AT--ATCACATTTAGTAGTTTGTTCCAAAGGTAAA-AGACCA-CA-------A-AAA--------------------------------------------------TCGCCGCAAAA-A-A----------------TA-T---ATCTAAAAAAAAAATAAAAACTA-------------------------------------------------------------C-------------------------------------------------------------------------------------------------------------------------------------AGC-----------------------------------ACAACA----------------CACA-------------------------------------GTGTAACAT------TCCAGTT-G---TTTATA------------------------TTTATG----------------AATAGTT--TGGTT-------TC-------CG----AGCAGTTCCGGTCG-----CCACCCTATCG---------------------------------------CGT---------TTCTCAAGTAAATTTTGCAG-A---------AACTATTCGAATAAA------TATACAGATAA-------------------A---------------------------GAAAT-AA----AASizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
............................................GTTCCAAAGGTAAA-AGAC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................181357.00357252723100000002000000
...........................................TGTTCCAAAGGTAAA-AGAC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19160.0060517100000000100000
..........................................TTGTTCCAAAGGTAAA-AGAC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2018.00842200000000000000
.........................................TTTGTTCCAAAGGTAAA-AGAC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2117.00742100000000000000
............................................GTTCCAAAGGTAAA-AGACC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1913.00300100100000100000
........................................GTTTGTTCCAAAGGTAAA-AGAC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2213.00321000000000000000
.......................................AGTTTGTTCCAAAGGTAAA-AGAC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2312.00211000000000000000
.................................TTTAGTAGTTTGTTCCAAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2012.00202000000000000000
........................................................AA-AGACCA-CA-------A-AAA--------------------------------------------------TCGCCG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00100000000000010000
..............................................TCCAAAGGTAAA-AGACCA-.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.00101000000000000000
...........CACAATAGTGG-AT--AT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1511.00100000000001000000
.........................................TTTGTTCCAAAGGTAAA-AGA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00100010000000000000
......................................TAGTTTGTTCCAAAGGTAAA-AGAC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.00110000000000000000
....................................AGTAGTTTGTTCCAAAGGTAAA-AGAC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.00110000000000000000
............ACAATAGTGG-AT--ATCA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1611.00100000000001000000
.........................................TTTGTTCCAAAGGTAAA-A...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.00101000000000000000
......AGTGCCACAATAGTGG-AT--............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.00100000100000000000
.............................................TTCCAAAGGTAAA-AGACC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.00100100000000000000
...........................ATCACATTTAGTAGTTTGT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00100000100000000000
.....................................GTAGTTTGTTCCAAAGGTAAA-AGAC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.00101000000000000000
............................................GTTCCAAAGGTAAA-AGACCA-C....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100000100000000000
...........................................TGTTCCAAAGGTAAA-AGACC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00100000100000000000
.............................................................ACCA-CA-------A-AAA--------------------------------------------------TCGCCGCAAAA-A-A----------------TA-T---A..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.00100000000000001000
........................................GTTTGTTCCAAAGGTAAA-AGACC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.00110000000000000000
............................................GTTCCAAAGGTAAA-AGACCA-CA-------A-AAA--------------------------------------------------TCG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2911.00100010000000000000
...................................................................A-------A-AAA--------------------------------------------------TCGCCGCAAAA-A-A----------------TA-...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00100000000000001000
........................................................AA-AGACCA-CA-------A-AAA--------------------------------------------------TCGC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.00100000000001000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TG----------------AATAGTT--TGGTT-------T...........................................................................................................................................................................................................................1530.33100000000001000000
droSec2
AACTTCAGTGCCACAATAGTGG-AT--ATCACATTTAGTAGTTTGTTCCAAAGGTAAA-AGACCA-CA-------A-AAA--------------------------------------------------TCGCCGCAAAA-A-A----------------TA-T---ATCTAAAAAAAC--TAAAAACTA-------------------------------------------------------------C-------------------------------------------------------------------------------------------------------------------------------------AGC-----------------------------------ACAAAA----------------CACA-------------------------------------GTGTAACAT------TCCAGTT-G---CTTATA------------------------TTTATG----------------AATAGTT--TGGTT-------TC-------CG----AGCAGTTCCGGTCG-----CCACCCTATCG---------------------------------------CGT---------TTCTCAAGTAAATTTTGCAG-A---------AACTATTCGAATAAA------TATACAGATAA-------------------A---------------------------GAAAT-AA----AASizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
............................................GTTCCAAAGGTAAA-AGAC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................18110.00100055
........................................GTTTGTTCCAAAGGTAAA-AGAC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2212.0021100
......................................TAGTTTGTTCCAAAGGTAAA-AGAC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010100
...............................................CCAAAGGTAAA-AGACCA-CA-------A-AAA--------------------------------------------------.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0011000
.....................G-AT--ATCACATTTAGTAGTTT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010010
..........................................TTGTTCCAAAGGTAAA-AGAC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010001
...........................................TGTTCCAAAGGTAAA-AGACCA-CA-------A-AAA--------------------------------------------------.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010001
.........................................TTTGTTCCAAAGGTAAA-AGAC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010100
............................................GTTCCAAAGGTAAA-AGACCA-CA-------A-AAA--------------------------------------------------.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010100
...........................ATCACATTTAGTAGTTTGTTCCAAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010001
............................................GTTCCAAAGGTAAA-AGACCA-.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0011000
...................................................................................................................................................................................C--TAAAAACTA-------------------------------------------------------------C-------------------------------------------------------------------------------------------------------------------------------------AGC-----------------------------------ACAAAA----------------CACA-------------------------------------G...............................................................................................................................................................................................................................................................................................................................2511.0011000
dm3
AACTTCAGTGCCACAATAGTGG-AT--ATCACATTTAGTAGTTTGTTCCAAAGGTAAA-AGACCA-CA-------A-AAA--------------------------------------------------TCGCCGCAAAA-A-A----------------TA-T---ATCTAAAAAAAA--AAAAAACTAAAAGCGAATATGAAAAG------------------------------------------CAC-------------------------------------------------------------------------------------------------------------------------------------AGC-----------------------------------ACA--------------------ACA-------------------------------------GTGTAACAT------TCCAGTT-G---TTTATA------------------------TTTATG----------------AATAGTT--TGGTT-------TC-------CG----AGCAGTTCCGGTCG-----CCACCCTATCG---------------------------------------CGT---------TTCTTAAGTAAATTTTGCAG-A---------AACTATTCGAATAAA------AATACAGATAA-------------------A---------------------------GAAAT-AA----AASizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
............................................GTTCCAAAGGTAAA-AGAC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................181108.0010800000000000000000000000000000000000001000000000000000000000000000000000000000000000000010000000001000000301000000000000000000000000000000000000000001010000100000000001000000100000000000000000000000000000000000001000001001000003000000000111401110006241445000130131211220000000001000301200301300100010000301000000000001000000034000
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............................................GTTCCAAAGGTAAA-AGACCA-.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2017.0070000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000001000000000000000000000000000000000000000000000000000120000000000000000000000000000000000000010
...........................................................AGACCA-CA-------A-AAA--------------------------------------------------TCGCCG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1817.0070000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100400000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000100000000000000000000000000000000
AACTTCAGTGCCACAATAGTG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2117.0070000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000050000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000100000000000000000000
...........................................TGTTCCAAAGGTAAA-AGAC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1916.0060000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000010000000100000000000000001000
......AGTGCCACAATAGTGG-AT--A...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1915.0050000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000500000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................TAGTTTGTTCCAAAGGTAAA-AGAC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2415.0050000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000001000000001001000000000000000000000
...........................................TGTTCCAAAGGTAAA-AGA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1815.0050000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000100000000000000000001000000000000000000000000000000000000100000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000
.........................................TTTGTTCCAAAGGTAAA-AGAC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2114.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000001000000000000000000000000000000000100000000000000000000000000000000000000010
..........................................TTGTTCCAAAGGTAAA-AGAC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2014.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000100000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000
.....................................GTAGTTTGTTCCAAAGGTAAA-AGAC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2513.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010001010000000000000000000000000000000000
.........................................TTTGTTCCAAAGGTAAA-AGA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2013.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000010000000000000000000000000100000000000000000000000
........................................GTTTGTTCCAAAGGTAAA-AGAC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2213.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000
...........................ATCACATTTAGTAGTTTG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1813.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000300000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................GTTTGTTCCAAAGGTAAA-AGACC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2313.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001100000000000000000000000000000000000
.........GCCACAATAGTGG-AT--ATCACATTTAGTA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2813.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................TTGTTCCAAAGGTAAA-AGA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1913.0030000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000
....................................................GGTAAA-AGACCA-CA-------A-AAA--------------------------------------------------TCGC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2213.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................GTTCCAAAGGTAAA-AGACC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1913.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000001000000000000001000000000000000000000000
..............................................TCCAAAGGTAAA-AGACCA-CA-------A-AAA--------------------------------------------------TCGC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2812.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................GTAGTTTGTTCCAAAGGTAAA-AGA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2412.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000
.........................................TTTGTTCCAAAGGTAAA-AGACCA-C....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2412.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.ACTTCAGTGCCACAATAGTG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2012.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................TCCAAAGGTAAA-AGACCA-.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1812.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................GTAAA-AGACCA-CA-------A-AAA--------------------------------------------------TCGCCG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2312.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000
........................................................AA-AGACCA-CA-------A-AAA--------------------------------------------------TCGC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1812.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................AGTTTGTTCCAAAGGTAAA-AGA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2212.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................AGTAGTTTGTTCCAAAGGTAAA-AG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2412.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
....................................................................................................................................................................................................GAATATGAAAAG------------------------------------------CAC-------------------------------------------------------------------------------------------------------------------------------------AGC-----------------------------------...............................................................................................................................................................................................................................................................................................................................................................................................1812.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................TGTTCCAAAGGTAAA-AGACCA-CA-------............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2312.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000
.....................................GTAGTTTGTTCCAAAGGTA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1912.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000100000000000000000000000000000000000
............................................GTTCCAAAGGTAAA-AGACCA-C....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........GCCACAATAGTGG-AT--ATC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1812.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................TTGTTCCAAAGGTAAA-AG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1812.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000
..............................................TCCAAAGGTAAA-AGACCA-C....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000
.................................TTTAGTAGTTTGTTCCAAAGGTA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......GTGCCACAATAGTGG-AT--A...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................TAGTTTGTTCCAAAGGTAAA-AGACC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000
................................................................................................................................................................................................AAGCGAATATGAAAAG------------------------------------------CAC-------------------------------------------------------------------------------------------------------------------------------------AGC-----------------------------------A..............................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............ACAATAGTGG-AT--ATCACAT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................AGTTTGTTCCAAAGGTAAA-AGAC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACCCTATCG---------------------------------------CGT---------TTCTTAAGTAAAT...............................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000
.....................................GTAGTTTGTTCCAAAGG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......AGTGCCACAATAGTGG-AT--ATC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................TTTAGTAGTTTGTTCCAAAGGT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000
AACTTCAGTGCCACAATAGT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000
AACTTCAGTGCCACAATAGTGG-AT--ATC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................CA--------------------ACA-------------------------------------GTGTAACAT------TCCAG............................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................GTAAA-AGACCA-CA-------A-AAA--------------------------------------------------TCG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010
.......................................................AAA-AGACCA-CA-------A-AAA--------------------------------------------------TCGC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000
...........CACAATAGTGG-AT--ATCAC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................AAACTAAAAGCGAATATG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....TCAGTGCCACAATAGTGG-AT--............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................GTAGTTTGTTCCAAAGGT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCGGTCG-----CCACCCTATCG---------------------------------------CGA---------............................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................AAAACTAAAAGCGAATATGAAAAG------------------------------------------.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAGTT--TGGTT-------TC-------CG----AGCAGTTCCGGTC................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................TCACATTTAGTAGTTTGTT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
...............................................................................A--------------------------------------------------TCGCCGCAAAA-A-A----------------TA-T---ATCT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................AGTAGTTTGTTCCAAAGGTAAA-AGAC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAAGTAAATTTTGCAG-A---------A............................................................................................1911.0010000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................ATCACATTTAGTAGTTTGTTC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000
...........................................................................................................................................................................................ACTAAAAGCGAATATGAA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............CAATAGTGG-AT--ATCACA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................TCACATTTAGTAGTTTGTTCCA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000
............................................GTTCCAAAGGTAAA-AGACCA-CA-------A-AAA--------------------------------------------------TC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TC-------CG----AGCAGTTCCGGTCG-----..........................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CG----AGCAGTTCCGGTCG-----CCAC......................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............CAATAGTGG-AT--ATCACAT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000
....................................AGTAGTTTGTTCCAAAGG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000
.................................TTTAGTAGTTTGTTCCAA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
...........CACAATAGTGG-AT--ATCACAT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
AACTTCAGTGCCACAATAGTGG-A...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................AA-AGACCA-CA-------A-AAA--------------------------------------------------TCGCCGCA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................ATTTAGTAGTTTGTTCCAAAGG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCCTATCG---------------------------------------CGT---------TTCTTAAGTAAAT...............................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................T--ATCACATTTAGTAGTTTGTTC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000
..................................TTAGTAGTTTGTTCCAAAGGTAAA-AGAC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................TAGTTTGTTCCAAAGGTAAA-AGA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................GTTCCAAAGGTAAA-AGACCA-CA-------A-AA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
...................TGG-AT--ATCACATTTAGTAGTTTGT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000
..............................................TCCAAAGGTAAA-AGACCA-CA-------A-AAA--------------------------------------------------TCG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................AAA--------------------------------------------------TCGCCGCAAAA-A-A----------------TA-...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................ATGAAAAG------------------------------------------CAC-------------------------------------------------------------------------------------------------------------------------------------AGC-----------------------------------ACA--------------------ACA-------------------------------------GTG.............................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010
............................................GTTCCAAAGGTAAA-AGA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................GTTTGTTCCAAAGGTAAA-AG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................A----------------TA-T---ATCTAAAAAAAA--AAAA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2020.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................A-T---ATCTAAAAAAAA--AAAAAA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2020.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................T---ATCTAAAAAAAA--AAAAA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................18160.1320000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................ATCTAAAAAAAA--AAAAAA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................18200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................TA-T---ATCTAAAAAAAA--AAAAAAA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................AAAAAAAA--AAAAAACTAAAA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.0510000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droEre2
AACTTCAGTGCCACAATAGTGG-AT--ATCACATTTAGTAGTTTGTTCCAAAGGTAAA-GGACCA-CA-------A-AAA--------------------------------------------------TCGCCGCAAAT--------------------------------------------------AAAGCGAATAAGAAAAC------------------------------------------TTT------------------------------------------------------------------------------------------------------------------------------------------------------------------------TA--CTACC----------------CAGT-------------------------------------GTGTTACAT------TCCAGTT-G---TTT--A------------------------TTTCTG----------------AATAGTT--TGGTT-------TT-------CG----AGCAGTTCCGGTCG-----CCACCTTATCG---------------------------------------CGT---------TTCTCGAGTAAA-TTTGCAG-A---------AACTATTCGTATAAA------TATGCAGATAA-------------------A---------------------------AAAAT-AA----AASizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
...............................CATTTAGTAGTTTGTTCCAAA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000010
............................................GTTCCAAAGGTAAA-GGACCA-CA-------A-AAA--------------------------------------------------T....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0011000000
................................................................................................................................................................................................AAGCGAATAAGAAAAC------------------------------------------TTT------------------------------------------------------------------------------------------------------------------------------------------------------------------------..................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000100
............................................GTTCCAAAGGTAAA-GGAC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000010
...............................CATTTAGTAGTTTGTTCCAAAGG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000010
.....................................GTAGTTTGTTCCAAAGGTAAA-GGA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010010000
............................................GTTCCAAAGGTAAA-GGACC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0011000000
droYak3
AACTTCAGTGCCACAATAGTGG-AT--ATCACATTTAGTAGTTTGTTCCAAAGGTAAA-AGACCA-TA-------A-AAA--------------------------------------------------TCGCCGCAAAA-A-AAAA-------------TA-T----TTTA------------AAACCGAAAGCGAATAAGAAAAC------------------------------------------TAC------------------------------------------------------------------------------------------------------------------------------------------------------------------------TA--CCACA----------------CACA-------------------------------------GTGTTACAT------TCCAGTT-G---TTT--A------------------------TTTCTG----------------AGTAGTT--TGGTT-------TC-------CG----AGCAGTTCCGGTCG-----CCACCTTATCG---------------------------------------CGT---------TTCTCAAGTAAATTTTGCAG-A---------AACTATTCGAATAAA------TATACAGATAA-------------------AA--------------------------AAAAT-AA----AASizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
............................................GTTCCAAAGGTAAA-AGAC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................18112.0012100110000000
................................................................A-TA-------A-AAA--------------------------------------------------TCGCCGCAAAA-.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.00110000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCTG----------------AGTAGTT--TGGTT-------TC-------CG----AG...........................................................................................................................................................................................................2311.00100000010000
.................................TTTAGTAGTTTGTTCCAAAGGTAAA-AG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.00100000010000
.......................................AGTTTGTTCCAAAGGTAAA-AGAC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.00100000010000
droEug1
AACTTCAGTGCCACAATAGTGG-AT--ATCACATTTAGTAGTTTGTTCCAAAGGTAAA-AAACCA-AA-------A-AAA---------CCAA-------ACAAA------TAAA---------------TCACCGCAAAA-A-TACATATT---------TA-T---ATATA------------AAACTAAAAGCAAATAATAAAA---------------------------------------ACATTTT------------------------------------------------------------------------------------------------AAAATCG--GA----------------------------------------------------------------AAAAAA----------------CACA-------------------------------------GTGTTACAT------TCCAGTT-G---GTT--A------------------------TT-------------A-------ATAGTT--TAGTT-------TC--------GC-TCACAAGTTCCGGTCG-----CCAACTTATCG---------------------------------------CGT---------TTCTTAAGAAAC-TTCAA---AAAAAAAG---ACAACTTAAATAAA------TAAAAAGATAA-------------------A----------------------------AAAC-GA----AASizeHit CountTotal NormTotal
No Reads
droBia1
AACTTCAGTGCCACAATAGTGG-AT--ATCACATTTAGTAGTTTGTTGCAAAGGTAAAGAGACCT-CA-------A-GCA--------------------------------------------------TCGCCGCAAAA-A-T----------------TG-T---ATCTC------------AAACTAAAAGCGAAACA-----------------------------T------GGACAAAAAGAGTTT------------------------------------------------------------------------------------------------------------------------------------------------------------------------AA--CCAAA----------------CACA-------------------------------------GTGCTACAT------TCCAGTT-G---GTT--A-------------------TTTA-TT-------------T-------ATAGTTTTTAGTT-------TC-------TG----AGCAGTTCCGGTCG-----CCACCTTATCG---------------------------------------CGT---------TTCTCAAGAAAT-GTTAAAG-A---------AACTACTTAAGTAAA------TAAA--------------------------AA--------------------------AAAAT--C----AASizeHit CountTotal NormTotal
No Reads
droTak1
AACTTCAGTGCCACAATAGTGG-AT--ATCACATTTAGTAGTTTGTTCCAAAGGTAAA-AAGACA-CA-------G-AAA--------------------------------------------------TCGCCGCAAAA---A----------------TA-T---ATCTA------------AAACTAAAAGCGAAAA----AA---------------------------------------AGACTTC------------------------------------------------------------------------------------------------------------------------------------------------------------------------AACAAAAAA----------------CACA-------------------------------------GTGTTACACTCGAATTCCAGTT-G---GTT--A------------------------TT-------------T-------TTAGTT--TAGTT-------TC-------CG----AGCAGTTCCGGTCG-----CCACCTTATCG---------------------------------------CGT---------TTCTCAAGAAAT-GTTAAAG-A---------AACTACTTAAGTAAA------TAAA---------------------------------------------------------AA-AA----CASizeHit CountTotal NormTotal
No Reads
droEle1
AACTTCAGTGCCACAATAGTGG-AT--ATCACATTTAGTAGTTTGTTCAAAAGGTAAAAAGACAA-CA-------AAAAA--------------------------------------------------TCGCCGCAAAA-A-T----------------TT-T---ATCTAA-----------AAACTTAAAGCGAAAAAG------------------------------------------------------------------------------------------------------------------------------------------------------------A----------------------------------------------------------------CCAAAA----------------CACA-------------------------------------GTGTTACAT------TCCAGTTTG---TTT--A------------------------TT-------------T-------ATAGTTT-TAGTT-------TG-------CG----AGCAGTTCCGGTCG-----CCACCTTATCG---------------------------------------CGT---------TTCTCATGAAAT-TTTTAAC-A---------AACTAC----ATTAA------TATAAAG-TAA-------------------A----------------------------AAAA-AA----CASizeHit CountTotal NormTotal
No Reads
droRho1
AACTTCAGTGCCACAATAGTGG-AT--ATCACATTTAGTAGTTTGTTCCAAAGGTAAAGAGACCA-TA-------A-AAA--------------------------------------------------TCGCCGCAAA----T----------------TT-T---ATCTAA-----------AAACTAAAAGCGAAAAAG------------------------------------------------------------------------------------------------------------------------------------------------------------A----------------------------------------------------------------CCAAAA----------------CACA-------------------------------------GTGTTACAT------TCCAGTTGG---TTT--A------------------------TT-------------T-------ATAGTTT-TAGTT-------TC-------CG----AGCAGTTCCGGTCG-----CCACTTTATCG---------------------------------------TGT---------TACTCAAGAAAT-TTTTAAC-A---------AACTATACAA----A------A----------ATAAAATAAA----------------------------------------ATAAG----CASizeHit CountTotal NormTotal
No Reads
droFic1
AACTTCAGTGCCACAATAGTGGGAT--ATAACATTTAGTAGTTTGTTC-AAAGGTAAA-AAA-CA-CA-------A-GAA--------------------------------------------------TCGCCGCAAA----T----------------TT-T---ATCTGA-----------AAACGAATAGCGAGAA----AAC----------------------AT------A---------ATTTCA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------A--ACGAAA----------------CTCA-------------------------------------GTGTTACAT------TCCAGTT-G---GTT--A------------------------TT-------------T-------ATAATT--TAGTT-------TC-------CG----AACAGTTCCGGTCG-----CTACTTTATCG---------------------------------------CGT---------TTCTTGAAAAAT-TT----G-A---------AACTACTTAAATAAA------TACAAAGATAA-------------------G----------------------------AA---AC----CASizeHit CountTotal NormTotal
No Reads
droKik1
TACTTCAGTGCCACAATAGTGG-AT--ATCACATTTAGTAGTTTGTTCAAAAGGTAAA-AAC-TG---------------------------AGAAATTTGCA--GAGAAATAA------AC---GAAATTCACAGCAAAA-------TGTTCG--------------AAATA------------AAACTAA-AGTAAAAAAA------------------------------------------------------------------------------------------------------------------------------------------------------------A---------------------------ACACTCACATTT----------------------A--ACGAAG----------------CTA---------------------------------AAAAAGTGCGGAAT------TCCAGTTTG---GTT--A------------------------TT-------------TATAGTTTATAGTTTTTCGTT-----ATTT-------TCTACAAGCAGTTCCGGTCG-----TAACCTTATCG---------------------------------------CGT---------TTCTCAAGAAAT-------------------------TCGTATAAAAAAATATATACATAT--ATAAAAA------------GAAACCAAATTTAATAATTAA---TAAAAAAGA-AA----AASizeHit CountTotal NormTotal
No Reads
droAna3
CGTT----TGCCACAATAGTGG-ATATATCACATTTAGTAGTTTGTTCAAAAGGTAAA-AATAAT-AAGAGAACGACAAT------------------TCGCCGAA------A-CTAAAAAA---G-AAACT-ATC------------------------------------------------------AAAAGCGAATAATA---CTTTCAAGAATATTTATTAAAAAATAAAACAA---------TTTTCAAGCAAA--------------------------------------------------------------------------------AAAACTAT-----T--------------------------------CG----------------------------------------AT----------------TTTA-------------------------------------GTGCGAATT------TCTTGTT-AA--TTTTTG------------------------TTTCTGATAAA----C-------ATAGTT--TTGTT-------TCTGATTTCTTGGTAACCAGTTCCGGTCG-----TAACCTTATCG---------------------------------------CGT---------TTCTCCAAATG--TTTGCAA-TAAAAATACAAAATATTCCTACAAA------AATACAAAAAA-----------------------------------------------AAAAC-GA----CASizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
.............................................TTCAAAAGGTAAA-AATAAT-.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001000001
.............................CACATTTAGTAGTTTGTTCAAAAGGT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.001000001
..............................................................AAT-AAGAGAACGACAAT------------------TCGCC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001000010
.................................................AAAGGTAAA-AATAAT-AAGAGAA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001000010
droBip1
CGTT----TGCCACAATAGTGG-ATATATCACATTTAGTAGTTTGTTCAAAAGGTAAA-AATACT-AA-------G-AGA-C-------------AATACGCCGAA------A-CTAAAAA----GAAAACT-ATTCCAA-AAT-CAACG------AAGAATA-T-------------------------------------------------------TTATTTAA-AAT------A---------TTTTCAAGCAAAT-------------------------------------------------------------------------------AAAACTAT--------------------------------------AG----------------------------------------AT----------------TTTA-------------------------------------GTGCCAAAT------TTTAGTT-AAAGTTTTTG----------------------GTTTTTTGATAAAAAAATAAAG-AAATAGTT--T--TT-------TCTGATTTCTTGGTAACCAGTTCCGGTCG-----TAACCTTATCG---------------------------------------CGAAAAAAACATAT------ATG--TTTGCAA-TAAAAA-G---TATATTTCCAC------------ACAAATA------------------------------------------------AAAAT-AA----AASizeHit CountTotal NormTotal
No Reads
dp5
TACTTCAGTGCCACACTAGTGG-AT-----ACATTTAGTAGTTTGTTCAAAAGGTAAT-AAT----GGGCGC--------TCTCGTCTCCCGAGCAATTCGCTCAAAGATATAA------ACAGTGAAAACT-ATC-------------AAT---------TT-T---ACAAA------------CAACTGAAGACGACGA-----------------------------------------------------------------------------------------------------------------------------------------------------------------C-------TGAATTTCGATTAAAA----------------------------------------------------------------ATTTTAAAAATAAATATAATTACCGATGTACCGAAAAGTGTA-AAC------TCTTGTT-A---GTT--A------------------------GT-------------T-------ATGTA-------------TTTT-------TGCCCAACCAGTTCCGGTCGGTCCGTAACCTTATCAC-G-T----------------TTTCATGGCGACTTGGCGCGG---------TTCTCAAGAAATTTATGCAG-AAAAAAAGCAAAA------------------A----------ATAAAATAAAACTACAACA-----------------------------AAGC-GAAGCAGCSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
.....CAGTGCCACACTAGTGG-AT-----ACATC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010010000000
.............CACTAGTGG-AT-----ACATTTAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010010000000
.......................................AGTTTGTTCAAAAGGTAAT-AAT----GGG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000100000
..............................................TCAAAAGGTAAT-AAT----GGGCGC--------TCTC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010100000000
............................................GTTCAAAAGGTAAT-AAT----GGGCGC--------TCTC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010100000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCGGTCGGTCCGTAACCTTA..................................................................................................................................................................................2111.0010100000000
droPer2
TACTTCAGTGCCACACTAGTGG-AT-----ACATTTAGTAGTTTGTTCAAAAGGTAAT-AAT----GGGCGC--------TCTCGTCTCCCGAGCAATTCGCTCAAAGATATAA------ACAGTGAAAACT-ATC-------------AAT---------TG-T---AC---------------AAACTGAAAAC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGAATTTCGATTAAAA----------------------------------------------------------------ATTTTAAAAATAAATATAAAAACCGATGTACCGAAAAGTGTA-AAC------TCTTGTT-A---GTT--A------------------------GT-------------T-------ATGTA-------------TTTC-------TGCCCAACCAGTTCCGGTCGGTCCGTAACCTTATCAC-G-T----------------TTTCATGGCGACTTGGCGCGG---------TTCTCAAGAAATTTATGCAG-AAAAAAAGCAAAA------------------A----------ATAAAATAAAACTACAACA-----------------------------AAGC-GAAGCAGCSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
.............................................TTCAAAAGGTAAT-AAT----GGGCG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2112.002200000
..................GTGG-AT-----ACATTTAGTAGTTTG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000001
.....................................GTAGTTTGTTCAAAAGGTAAT-AA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001000001
................................................................................................ATTCGCTCAAAGATATAA------ACAGTG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.001000010
droWil2
TGCTTCAGTGCCACAATAGTGG-AT--ATCACATTTAGTAGTTTGTTAAAAAGGTAA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
....................................AGTAGTTTGTTAAAAAGG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1813.00300030
.................................TTTAGTAGTTTGTTAAAAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00100001
...........................ATCACATTTAGTAGTTTG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.00100010
................................ATTTAGTAGTTTGTTAAAAAGG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.00101000
.................................TTTAGTAGTTTGTTAAAAAGG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100001
droVir3
TGCTTCAGTGCCACAATAGTGG-AT--ATCACATTTAGTAGTTTGTTGAAAAGGTAAA-ATA-AT-CAGCGA---------A------GCCAA-------GCGAAC------AAGAAATAGC---G-AAACT-ATGCAAA-ACT-ACACGTTCGTTAACAACAAT-----------------------------------AA----------------------------------------------------------TTGAAATATTCAAAAAATTTAACTATTTTTTTTTTGTTTTCTCAAAAATATATTTCACTAAATAAAGACATTAAATTTATAAAA---------------------------------------------------------------------------------CTATT----------------GAAT-------------------------------------GCGTTGACTGTGAATTATTGTT-A---TAT--G------------------------TT-------------T-------ATAGCT--CAGTT-----TTTT-------CGCGCTACAAGTTCCGGTCG-----TAGCCTTATCGGAAATTTCTGTGTCGCGTCGCTT--------------AACTT---------TTCTCAA---ATTTATGCAA-ACAAAA--CAAAA--------------------------------------------------------ATTTCAAAACTACATTTGACAAAAA-CA----AASizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
.................................TTTAGTAGTTTGTTGAAAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2012.002020000000000000000000000000000000000000000000000000000000000000
.......................................AGTTTGTTGAAAAGGTAAA-ATA-A.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001000000000000000001000000000000000000000000000000000000000000000
...........CACAATAGTGG-AT--ATCACATTT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001001000000000000000000000000000000000000000000000000000000000000
....................................................................GCGA---------A------GCCAA-------GCGAAC------AAGAAATAGC---G-........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.001000000000000001000000000000000000000000000000000000000000000000
.......................................AGTTTGTTGAAAAGGTAAA-ATA-AT-CAGC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.001000000000000001000000000000000000000000000000000000000000000000
........................................................................................................AC------AAGAAATAGC---G-AAACT-A.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001000000100000000000000000000000000000000000000000000000000000000
...........................................................................................AA-------GCGAAC------AAGAAATAGC---..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.001000000000100000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCTTATCGGAAATTTCTGTGTCG................................................................................................................................................................2311.001000001000000000000000000000000000000000000000000000000000000000
...............................................................AT-CAGCGA---------A------GCCAA-------GCGA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.001000000000000000000000000000000000000001000000000000000000000000
.........................................................A-ATA-AT-CAGCGA---------A------GCCAA-------GCGA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001000000000000000000000000000000000000001000000000000000000000000
....................................AGTAGTTTGTTGAAAAGG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.001000000001000000000000000000000000000000000000000000000000000000
.......................................................................................................................................GCAAA-ACT-ACACGTTCGTTAA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000000000000000000000000000010000000000000000000000000000000000
droMoj3
TGCTTCAGTGCCACAATAGTGG-AT--ATCACATTTAGTAGTTTGTTA-AAAGGTAAA-AAATTATCA---------GCT---TGTCTGTCAA-------GCGAAC------AAGAAATAGC---G-AAACT-ATGCAAA-ATT-ACACGTTCGTTAACAATA-T---ATATA------------TAAC-----------------------------------------AA------A---------TA--TATGTATATAAAAATATTCAAAAA-----------------TTGT------------------------------------------------------------CG-TACTGAATTC----------------AAT----------GAAAAATAAGTTTATAAAAAAA--AAAAAAA----------------AACAATTTTAAA----TATATAATTGTGAAT-----------------------------GTT-A---TAT--ATTGCTGCAAATCCATTGTACATA-GT-------------T-------ATATT-------------TTTT-------CGTGCTACAAGTTCCGGTCG-----TACCCTTATCGA-ATTTAATGTATCGCGTCGTTTTCTTGGTA-TTTTGAGCAA---------AACTCAAGCAAA-TTTTTAA-A---------AACTACATT--------------------TA---------------------------------------------------AA-AA----CASizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
..........................................................................................................................................................................................................................................................................TATTCAAAAA-----------------TTGT------------------------------------------------------------CG-TACTGAATT......................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.001100000
droGri2
TGCTTCAGTA-CACAATAGTGG-AT--ATCACATTTAGTAGTTTGTTCAAAAGGTAAA-ATAATT-CA-------G-CGTTC------GCT-------TCGCACAC------A-GCAAAAGC---G-AAACT-ATGCAAAAACT-ACACGTTCATTAAGAAAA-TAAAATATA------------AAAATAAAAT--------------------------------------------------------------------------TCAA--------------------------------------------TTAAATTAAAA--------------AAATATTAAAATTAAAGATAC-AAATTC----------------AGT-----------------------------------AAAATTGCAAAAATTATTTAGATTCG-------------------------------------TTGCTAT-CGTAAGCTATTGTT-A---TTT--A------------------------TT-------------T-------ATAGTT--CTTTTCATTTTTTT-------CGCGCTCCAAGTTCCGGTCG-----TAGTCTTATAAA-GTTGTGTGTGTCG------------------------CGT---------CGTTTTATATC--TTC---AAC----------ACT-----------------------AACA--------------------------AAATTAAACAATTACATTTGACAATAA-AA----AASizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
...........................................................ATAATT-CA-------G-CGTTC------GCT-------TCGC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00110

Generated: 05/19/2015 at 12:30 PM