ID:

dsi_12933

 Coordinate:

3l:20011564-20011713 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-6.2 -5.7

Flybase annnotation

exon [3l_20011438_20011563_+]; CDS [3l_20011438_20011563_+]; intron [3l_20011564_20012153_+]

No Repeatable elements found

Sense Strand Reads

##################################################--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
ATTCGTCCAGGTCAAGGAGTGCTGCTGTGCTGAGATCTGGATCAAGAAGTGTAAGTACGAGATACAATATCTTCGCATCTGGTACACGAATATATCCGTGCTAAATGACCATGCCACTCACACATGAGAAAGGAGGGATTAACAAAGCAATGCTAATTTAATAACGTAAACATACTTCCCCGATTATATTCAGTTTCCACACGGCGCCTTCGATAAATATACACAAGGCAGAAAAAAATGCCAGAGAGAT
********************************************************************.......(((.((((((............)))))).)))......***************************************************************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total M023
head
 M024
male body		 O002
Head
 M053
female body
 O001
Testis
 SRR902009
testis
 SRR553485
Chicharo_3 day-old ovaries
 SRR553486
Makindu_3 day-old ovaries
 SRR553488
RT_0-2 hours eggs
 SRR618934
dsim w501 ovaries
............................................................................................TATCCGTGCTAAATGACCATG......................................................................................................................................... 21 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0
......................................................................................CGAATATATCCGTGCTAAATG............................................................................................................................................... 21 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0
.............................CTGAGATCTGGATCAAGAAGTGGC..................................................................................................................................................................................................... 24 2 1 1.00 1 0 1 0 0 0 0 0 0 0 0
............................GCTGAGATCTGGATCAAGAAGTGGC..................................................................................................................................................................................................... 25 2 1 1.00 1 0 1 0 0 0 0 0 0 0 0
....................................................................ATCTTCGCATCTGGTACAC................................................................................................................................................................... 19 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0
.............AAGGAGTGCTGCTGTGCC........................................................................................................................................................................................................................... 18 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0
.......................GCTGTGCTGAGATCTGGATCAAGAAGTC....................................................................................................................................................................................................... 28 1 1 1.00 1 0 0 0 1 0 0 0 0 0 0
.................................................................................................................................AAGGAGGGATTGGCAAAGCA..................................................................................................... 20 2 1 1.00 1 0 0 0 0 0 1 0 0 0 0
..............................................................................................................ATGCCACTCACACATGAGAA........................................................................................................................ 20 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0
....GTCCAGGTCAAGGAGTGCTGG................................................................................................................................................................................................................................. 21 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................................TCGATAAATATACACAAGGCAG................... 22 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0
..................................................................ATATCTTCGCATCTGGTACACG.................................................................................................................................................................. 22 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0
...................................................................TATCTTCGCATCTGGTACACG.................................................................................................................................................................. 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0
...........................TGCTGAGATCTGGATCAAG............................................................................................................................................................................................................ 19 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
....GTCCAGGTCAAGGAGTGCTGC................................................................................................................................................................................................................................. 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................................TATATTCAGTTTCCACACGGC............................................. 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
..............................................................TACAATATCTTCGCATCTGGT....................................................................................................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................................CGATAAATATACACAAGGCAG................... 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0
..........................................................................................................................CATGAGAAAGGAGGGATTAAC........................................................................................................... 21 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0
...................................................................................................................................................CAATGCTAATTTAATAACGT................................................................................... 20 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
...............................................................ACAATATCTTCGCATCTGGT....................................................................................................................................................................... 20 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0
.......................GCTGTGCTGAGATCTGGAT................................................................................................................................................................................................................ 19 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................................TAAATATACACAAGGCAGAA................. 20 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0
.................................................................................................................................AAGGAGGGATGAACA.......................................................................................................... 15 1 5 0.20 1 0 0 0 0 0 0 1 0 0 0
...........................................AAGACCTGTTAGTACGAGA............................................................................................................................................................................................ 19 3 10 0.10 1 0 0 0 0 0 0 0 1 0 0
...........................TGCGGAGATCTGGCTCA.............................................................................................................................................................................................................. 17 2 15 0.07 1 0 0 0 0 0 0 0 0 1 0
...............................................................................................................TGCCAGTCTCACATGAG.......................................................................................................................... 17 2 19 0.05 1 0 0 0 0 0 0 0 0 0 1

Anti-sense strand reads

TAAGCAGGTCCAGTTCCTCACGACGACACGACTCTAGACCTAGTTCTTCACATTCATGCTCTATGTTATAGAAGCGTAGACCATGTGCTTATATAGGCACGATTTACTGGTACGGTGAGTGTGTACTCTTTCCTCCCTAATTGTTTCGTTACGATTAAATTATTGCATTTGTATGAAGGGGCTAATATAAGTCAAAGGTGTGCCGCGGAAGCTATTTATATGTGTTCCGTCTTTTTTTACGGTCTCTCTA
*****************************************************************************************************************************************.......(((.((((((............)))))).)))......******************************************************************** 		Read size # Mismatch Hit Count Total Norm Total M023
head
 M024
male body		 SRR902009
testis
 O001
Testis
 O002
Head
 SRR553486
Makindu_3 day-old ovaries
 SRR553488
RT_0-2 hours eggs
 SRR553487
NRT_0-2 hours eggs
 SRR618934
dsim w501 ovaries
...............................................TCACATTCATGCTCTATGTTA...................................................................................................................................................................................... 21 0 1 2.00 2 2 0 0 0 0 0 0 0 0
....CAGGTCCAGTTCCTCACGGCG................................................................................................................................................................................................................................. 21 1 1 2.00 2 0 0 2 0 0 0 0 0 0
........................................................................................................................................................................................................TGCCGCGGAAGCTATTTATAT............................. 21 0 1 2.00 2 1 1 0 0 0 0 0 0 0
..................CACGACGACACGACTCTAGAC................................................................................................................................................................................................................... 21 0 1 2.00 2 2 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................TGTGCCGCGGGAGCTATTTATA.............................. 22 1 1 1.00 1 0 0 1 0 0 0 0 0 0
.........................................................................................................................................................................................................GCCGCGGAAGCTATTTATA.............................. 19 0 1 1.00 1 1 0 0 0 0 0 0 0 0
................................................................................................................CGGTGAGTGTGTACTCTTTCCT.................................................................................................................... 22 0 1 1.00 1 0 0 0 1 0 0 0 0 0
.............................................................................................................................................................................................................CGGAAGCTATTTATATGTGTTC....................... 22 0 1 1.00 1 1 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................................CGCGGAAGCTATTTATATGTG.......................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................TGTGCCGCGGAAGCTATTTAT............................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................................CAGAAGCTATTTATATGTGTT........................ 21 1 1 1.00 1 0 1 0 0 0 0 0 0 0
......................................................................................................................................................................................................................TTTATATGTGTTCCGTCTTTT............... 21 0 1 1.00 1 0 0 0 0 1 0 0 0 0
........................GACACGGCTCTAGACCTAGTT............................................................................................................................................................................................................. 21 1 1 1.00 1 0 1 0 0 0 0 0 0 0
..........................CACGACTCTAGGCCTAGTTCTT.......................................................................................................................................................................................................... 22 1 1 1.00 1 0 1 0 0 0 0 0 0 0
......................................................................................................................................................................................................CGTGCCGCGGAAGCTATTTAT............................... 21 1 1 1.00 1 1 0 0 0 0 0 0 0 0
......................................................................................................................................CCCTAATTGTTTCGTTAC.................................................................................................. 18 0 1 1.00 1 0 0 0 0 1 0 0 0 0
..............................................................................................................................................................................................GTCAAAGGTGTGCCGCGGAAG....................................... 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0
.............................................................................................................................................................................................................................GTGTTCCGTCTTTTTTTAC.......... 19 0 1 1.00 1 1 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................................GAAGCTATTTATATGTGTTC....................... 20 0 1 1.00 1 0 0 0 1 0 0 0 0 0
...............................................TCACATTCATGCTCTATGTTAT..................................................................................................................................................................................... 22 0 1 1.00 1 1 0 0 0 0 0 0 0 0
........TCCAGTTCCTCACGACGACAC............................................................................................................................................................................................................................. 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................TCAAAGGTGTGCCGCGGAAGC...................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0
.....AGGTACAGTTCCTCACCA................................................................................................................................................................................................................................... 18 2 8 0.25 2 0 0 0 0 0 2 0 0 0
.....AGGTACAGTTCCTCAC..................................................................................................................................................................................................................................... 16 1 5 0.20 1 0 0 0 0 0 1 0 0 0
....................................................................................................................................................................................................GTTGTGCCGCGGAAGC...................................... 16 1 6 0.17 1 0 0 0 0 0 0 1 0 0
.......................................................................................................................................................................TTTGTATGAAGGGGG.................................................................... 15 1 10 0.10 1 0 0 0 0 0 0 0 0 1
.........................................................................................................TCTGGTAAGGTGATTGTG............................................................................................................................... 18 3 20 0.05 1 0 0 0 0 0 0 0 1 0
....................................................................................................................................................................ACGTTTGTATGAAGGGG..................................................................... 17 2 20 0.05 1 0 0 0 0 0 0 0 1 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim2 3l:20011514-20011763 + dsi_12933 ATTCGTCCAGGTCAAGGAGTGCTGCTGTGCTGAGATCTGGATCAAGAAGTGTAAGTACGAGAT---------------ACAAT----------------------------------------------------------------------------------------------------------ATC------TTCGCATCTGGTACACG---------------------------------------------------A-------------ATATATCC-GTGCTAAAT------GACCATGC--------------CACTC-------ACACATGAGAAAG--GAGGGA-TTAACAAAGCAATGCTAATT-TAATAACGTAAACATAC-TTCCCCGATTATATTCAGTTTCCACA-CGGCG---CCTTCGATAAAT--ATACACAAGGC-AGAAA--AA--------AATGC-------------------------------------C--AGAGA-GAT
droSec2 scaffold_11:337695-337945 + ATTCGTCCAGGTCAAGGAGTGCTGCTGTGCTGAGATCTGGATCAAGAAGTGTAAGTACGAGAT---------------ACAAT----------------------------------------------------------------------------------------------------------ATC------TTCGCATCTGGTAGCAC--------------------------------------------------GA-------------ATATATCC-GTGCTAAAT------GCCCATGC--------------CACTC-------ACACATGAGAAAG--GAGGGA-TTAACAAAGCAATGCTAATT-TAATAACGTAAACATAC-TTCCCCGATTATATTCAGTTTCCACA-CGGCG---CCTTCGATAAAT--ATACACAAGGC-AGAAA--AA--------AATGC-------------------------------------C--AGAGA-GAT
dm3 chr3L:20442686-20442962 + ATTCGTCCAGGTCAAGGAGTGCTGCTGTGCTGAGATCTGGATCAAGAAGTGTAAGTACTAGAT---------------ACAAC--T-------GCCAACCC----------------CTAGGGCAT----------------------------------TCGTGG----------------------AATC------ACCTCATCTGGTAGCTT--------------------------------------------------G--------------ATATATCC-GTGCTAAAT------GCCCATGC--------------CACTCC------ACACATGAGAAAG--G-GGGA-TTAACAAAGCAATGCTAATT-TAATAACGTAAACATAC-TTCCCCGATTATATTCAATTTCCACA-CGGCG---CCTTCGATAAAT--ATACACAAGCC-AGAAA--AAA------AAATGC-------------------------------------C--AGAGA-GAT
droEre2 scaffold_4784:20144253-20144538 + ATTCGTGCAGGTCAAGGAATGCTGCTGTGCTGAGATCTGGATCAAGAAGTGTAAGTAGTAGATCCACCAGATC---------------------------------------------------------------CACAAATGCCAACTCCTCTGGCACTCGGGGC----------------------ACC------ATCGCATCTGGAAGCCC------------------------------------------------------------------AATGGCC-GTGCTAAAT------GCCCATGC--------------CACTC-------ACACACGAGAA------GGGA-TTAACAAAGCAATGCTAATT-TAATAACGTAAACATAC-TTCTGCAATTA--TTCTGTTTCCACA-CGGCG---CCTTCGATAAAT--ATACACAAGCC-AGAAA--TAACAGCAACAATAG-------------------------------------C--AGAGA-GAT
droYak3 3L:20123443-20123712 - ATTCGTGCAGGTCAAGGAATGCTGCTGTGCTGAGATCTGGATCAAGAAGTGTAAGTACCAGTT---------CTACAGACGAA--T-------GAAAACTC-------------------------------------------------------------GTGGG----------------------ATC------ATCGCATCTGGAAGCAC------------------------------------------------------------------AGTATGA-GTGCTAAAT------GCCCATGC--------------CACTC-------ACACATGAGAA------GGGA-TTAACAAAGCAATGCTAATT-TAATAACGTAAACATAC-TTCTGCGATTA--TTCTGTTTCCACA-CGGCG---CCTTCGATAAAT--ATACACAAGCC-AGAAA--TAACAGCAACAATAG-------------------------------------C--AGGGA-GAG
droEug1 scf7180000409711:5538338-5538631 - ATTTGTGCAGGTCAAGGAGTGCTGTTGCGCTGAGATCTGGTTTAAAAAGTGTAAGTATCATAA---------------ACATT--T---------------GCATTACTTACTTCCCATAGAGCAT----------------------------------TTATCA-----------GCTTAACTCGTAATA------TTTTCATCTGGAATAAC------------------------------------------------------------------AAAATCC-ATGCTATAT------GCCCATGC--------------CACTC-------ACACATGAGGA------GGGA-TTAACAAAGCAATGCTAATT-TAATAATGTAAATATAC-TTTTTCGATGA--TTCTGTTTCAACA-CGGCA---CCTTCGATAAAC--ATTCAAATACC-AGAAA--TAACAGCAACAATAG-------------------------------------C--CAAGA-GAT
droBia1 scf7180000302193:5613213-5613469 - ATTCGTGCAGGTCAAGGAGTGCTGCTGCGCTGAGATCTGGTTCAAGAAGTGTAAGTATCATTC---------------ACGTT--T------------------------------------------------------------------------------------------------GCTCATAGTC------ATCGCATCTGGCACCAC------------------------------------------------------------------AATATCC-ACGCTA-AT------GTCCATGC--------------CTCTC-------ACACATGGGGA------GGGA-TTAACAAATCAATGCTAATT-TAATAACGTAAATATAC-TTCTCCGATGA--TTCTGTTTCCACA-CGGCG---CCTTCGATAAAC--ATACACATACC-AGAAA--TAACAGCAACAATGG-------------------------------------A--CGAGA-GAT
droTak1 scf7180000415254:219309-219597 - ATTCGTCCAGGTCAAGGAGTGCTGCTGCGCTGAGATCTGGCTCAAGAAGTGTAAGTATTTCAT---------------ATATT--T-------GGAAACT-------------ACCAAT-AGGCAT----------------------------------TCGTGGA----------ACTTTGCTCGTAGTC------ATCGCATCTGGAAGCAC------------------------------------------------------------------AATATCC-ATGCTAAAT------GCTCATGC--------------CACTC-------ACACATGAGGA------GGGA-TTAACAAAGCAATGCTAATT-TAATAACGTAAATATAC-TTTTTCGATGA--TTCTGTTTCCACA-CGGCG---CCTTCGATAAAC--ATACACATACC-AGAAA--TAACAGCAACAATGG-------------------------------------T--GGAGA-GAT
droEle1 scf7180000491193:4777179-4777485 + ATTTGGGGCGGTCAAGGAGTGCTGCTGCGCTGAGATCTGGATCAAGAAGTGTAAGTATTATAC---------------ATACA--T-------GAACACTATCATGCCTCACTCCCAATGAGTTAT----------------------------------TCACGGT----------GCTCTGCTTGAAGTC------ATCGCATCTGGAAATAC------------------------------------------------------------------AATATCC-ATGCTAAAA------GCCCACGC--------------CACTC-------ACACATGAGAA------GGGA-TTAACAAAGCAATGCTAATT-TAATAATGTAAATACAC-TTCTTCGATGA--TTTTGTTTCCACA-CGGCG---CCTTCGATAAAC--ATACACATACC-AGAAA--TAACAGCAACAATGA-------------------------------ATG--CC--CAAGA-GAT
droRho1 scf7180000769696:57844-58146 + ATTTGCTGCGGTCAAGGAGTGCTGCTGCGCTGAGATCTGGATCAAGAAGTGTAAGTATAAGGT---------------ATATT--T-------GGAAACTCTCATGCTTCACTCCCAATGAGGCGT----------------------------------TCATGGG----------GCTCCGCTCATAGTC------ATTGCATCTGGAATCAC------------------------------------------------------------------AATATCC-ATGCTAAAT------GCCCATGC--------------CACTC-------ACACATGGGGA------GGGA-TTAACAAAGCAATGCTAATT-TAATAATGTAAATACAT-TTTTTCGATCA--TTCTGTTTCCACA-CGGCG---CCTTCTATAAAC--ATACACATACC-AGAAA--TAACAGCAACAATGG-------------------------------------C--CAAGA-GAT
droFic1 scf7180000454113:1880210-1880509 - ATTCGTTGAGATCAAGGAGTGCTGCTGCGCTGAGATCTGGCTAAAGAAGTGTAAGTATTGAGT---------------TCATT--T-GAA--TAGATA---------CCCACCTCCGATGAGGTGT----------------------------------TCATGGG----------TATCTGATCATAGTC------AATGCACCTGGAACCAC------------------------------------------------------------------AATTCAC-ATGCTAAAT------GCCCATGC--------------CACTC-------ACACATGGGGA------GGGA-TTAACAAAGCGATGCTAATT-TAATATTGTAAATACAC-CTTTTCGATGA--ATCTGTTTCCACT-CGGCG---CCTTCGATAAAC--ATACACATACC-AGAAA--TAACAGCAACAATGG-------------------------------------CCAAGAGA-GAT
droKik1 scf7180000302441:3170575-3170860 + CTTCGCGGAGGTCAAGGAGTGCTGCTGCGCTGGGACCTGGGTCAAGAAGTGTAAGTATTTTCC--ATCCA------ATACG-A--T-------GGAGACT----------------------------------------------------------------------------------GCACGTAGCCATAGTGTTCGCATCTGGTATCAC------------------------------------------------------------------ACTAGCA-ATGCTAAAT------GCTCATGC--------------CACTCCGAACGAACACACGGAGC------GGGA-TTAACAAAGCGATGCTAATT-TAATAATGTAAATATACAGTTTTCGATGA--TTCTGTTTCCACAACGGCG---CCTTCGATAAAC--ATACAAATACC-AGAAA--TAACAGCAACAATGG-------------------------------------C--CGAGA-GAT
droAna3 scaffold_13337:10812969-10813234 + TTTCGCAGAAGTCAAGGAGTGCTGCTGCGCCAAGGCATTTTACAGAAAGTGTAAGTATCAAGT---------------GTATTCCTTAAAACTGGGAGTTCG---------------GTGGG------------------------------------------------------------GCACGTAGGC------ATTTCATTTGGAACCAC------------------------------------------------------AG---------CGGCGGCA-CTGCTAAAT------GCTCATGC--------------CACTA-------ACACATGGGGA------TGGATTTAACAAAGCGATGCTAATT-TAATAATGTAAATATA--------------------------CA-CGGCG---CCTTCGATAAACACATGCACATACC-AGAAAAATAACAGCAACAATGG-------------------------------------G--CCGGA-GAT
droBip1 scf7180000396569:566725-566984 - GTTCGCAGAAGTCAAGGAGTGCTGCTGCGCCAAGGCCTTTTACAACAAGTGTAAGTATCAAGT---------------GCATTCCTTGAAGCGAGAAGTTCG---------------GT------------G-------------------------------------------------GGCACGTAGGC------ACATCATTTGGAACCAC------------------------------------------------------------------AGTGGCA-CTGCTGAAT------GCTCATGG--------------CACTA-------ACACATGGGGAT-----GGGT-TTAACAAAGCGATGCTAATT-TAATAATGTAAATATA--------------------------CA-CGGCG---CCTTCGATAAAC--ATGCACATACC-ACAAAAATAACACCAACAATGG-------------------------------------G--CGGGA-GAT
dp5 XR_group8:7861662-7862010 + dps_3367 CTTCGACGAGGTCAAAGAATGCTGCTGTGCACCTGCCTGGGCCAAGAAGTGTAAGTACCAGAT---------------ACAAA--T-------AGAGATTCGCATGA----ATTCGAATGAGGCATCCACTG------------GCACTGCCACTGCCACTGGCACT----------------------GCCATCGT----GTGTGTGGAGTCAC------------------------------------------------------------------AATATCTAATGCTAGATGCTAAATCGCATGC--------------CACTC-------ACACATGGCCA------GGGA-TTAACAAAGCAATGCTAATT-TAATACTGTAAATATAC-TTTTTCAATGA--TTCCATTTCCACA-CGGCG---CCTTCGATAAAT--AAACAAATGCC-AAAAA--CAACAACAACAACAA------TAATAATAGGCAGCAAAATCATCCAATATTCC--ATAGC-CCT
droPer2 scaffold_40:51449-51817 + CTTCGACGAGGTCAAAGAATGCTGCTGTGCACCTGCCTGGGCCAAGAAGTGTAAGTACCAGAT---------------ACAAA--T-------AGAGATTCGCATGA----ATTCGAATGAGGCATCCACTGGCACTGGCACTGGCACTGCCACTGCCACTGGCACT----------------------GCC------ATCGTGTGT--------------------------------------------------------------GTGTGGAGTCACAATATCTAATGCTAGATGCTAAATCGCATGC--------------CACTC-------ACACATGGCCA------GGGA-TTAACAAAGCAATGCTAATT-TAATACTGTAAATATAC-TTTTTCAATGA--TTCCATTTCCACA-CGGCG---CCTTCGATAAAT--AAACAAATGCC-AAAAA--CAACAACAACAACAACAACAATAATAATAGGCAGCAAAATCATCCAATATTCC--ATAGC-CCT
droWil2 scf2_1100000004830:510472-510706 - TTTTGAAGAGGTGAAAGAATGTTGTTGTGCCAGTGCTTTGGCCAAAGAATGTAAGTAATCCGT---------------TTATA--T-AC--CTATAT-------------------------GTA----------------------------------------------------------------------------TTATTAGGTATATA------------------------------------------------------------------AAAATCT-ATGATATAT------ATGTACAT---------------ATGT-------ACACATGTTTTGGGCGGGGGA-TTAACAATGCTTTGCTAATTTTTATAACGTAAATAGAT-CTCT-----------CGATTTCCACA-TAGCGAAGGCGCCGATAAAT--AAACAA--ATC-AAAA-------------------------------------------------------------GAGAAC
droVir3 scaffold_13049:18892316-18892565 - dvi_20542 CTTCGAGGAGGTCAAGGAATGCTGCTGTGCAGCCGCTTTGGTCAGCGAGTGTAAGTGTGATTG---------------GAATTTTT---------------TTTTGGTTGAGTTTAGGCAATATTT---------------------------------------GTTATTTAACCAGCCC------------------------------------------CTTGGATATATGATCAA-AAAATACTTATATAGGTGCT------ACAC---------TGAAATCA-ATGCTAAAC------ACACACAC---------------AC---------ACACCCATCTT------AAGA-TCAACAAAACGGTGCTAATT-CCATAA---------------------------------------------------------AC--------AAACCTAAGAA--AGCCAGCAGAAAT------------------------------------------------GAT
droMoj3 scaffold_6680:12333049-12333316 + CTTCGAGGAAGTCAAGGAATGCTGTTGTGTATCCGCTTTTCTCAGAGAGTGTAAGTGCCATTG---------------GAATG--T---------------TTATGGAAGAGTTGGAACAAGT--T---------------------------------------GGTATTTGGACA------------------------------------GCAGCAGCACAGCAGATCAATGATCAATAAAATACTTATATATGTATAACGTGTATAC-------------ATAA-ACACTCAGC------AGCCA---------ACGCTCACCACTC---ATACACACCCAGTTG------AAGA-TTAACAAAGCAATGCTAATT-TTATAATGTAAATAG--------------------------------------TACTGGATAGAC-------------------------------------------------------------------------C--TGCAA-GAT
droGri2 scaffold_15110:19858898-19859196 - CTTTGAGGAAGTCAAGGAATGCTGTTGCGCATCCGCTTTGGTCCGCGAGTGTAAGTGTGATTA---------------GAATC--T---------------GTATGAATCACTTTCAACAAGATAT---------------------------------------TTTATTTGAAGAGCAC------------------------------------------TGGATATATATGTCCGT-AATATACTAATACTTGTGC-------ATAC---------AGAAATCA-ATGCTAAAT------GCTGGGGTTCCGCAACATTCAACACTC---ACACACACCCATCTA------GGGA-TTAACAAAGCGATGCTAATT-TCATAATGTAAATAGAC-ACGATCGCT-----TCTG------------------ATTCGATAAAC--AAACCTAAGAA-AG-------GCAGCA--------------------------------------------------GATCAT

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
ATTCGTCCAGGTCAAGGAGTGCTGCTGTGCTGAGATCTGGATCAAGAAGTGTAAGTACGAGAT---------------ACAAT----------------------------------------------------------------------------------------------------------ATC------TTCGCATCTGGTACACG---------------------------------------------------A-------------ATATATCC-GTGCTAAAT------GACCATGC--------------CACTC-------ACACATGAGAAAG--GAGGGA-TTAACAAAGCAATGCTAATT-TAATAACGTAAACATAC-TTCCCCGATTATATTCAGTTTCCACA-CGGCG---CCTTCGATAAAT--ATACACAAGGC-AGAAA--AA--------AATGC-------------------------------------C--AGAGA-GATSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
...........................................................................................................................................................................................................................................................................................TATCC-GTGCTAAAT------GACCATG............................................................................................................................................................................................................................2112.00220000000000000000
.....................................................................................................................................................................................................................CG---------------------------------------------------A-------------ATATATCC-GTGCTAAAT------G..................................................................................................................................................................................................................................2111.00100000100000000000
.............................CTGAGATCTGGATCAAGAAGTGGC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.00101000000000000000
............................GCTGAGATCTGGATCAAGAAGTGGC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.00101000000000000000
.............................................................................................................................................................................................ATC------TTCGCATCTGGTACAC.............................................................................................................................................................................................................................................................................................................................1911.00100000100000000000
.............AAGGAGTGCTGCTGTGCC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.00101000000000000000
.......................GCTGTGCTGAGATCTGGATCAAGAAGTC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.00100010000000000000
....................................................................................................................................................................................................................................................................................................................ATGC--------------CACTC-------ACACATGAGAA......................................................................................................................................................................................2011.00100001000000000000
....GTCCAGGTCAAGGAGTGCTGG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00110000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGATAAAT--ATACACAAGGC-AG.....................................................................2211.00100001000000000000
.................................................................................AT----------------------------------------------------------------------------------------------------------ATC------TTCGCATCTGGTACACG---------------------------------------------------.........................................................................................................................................................................................................................................................................2211.00101000000000000000
..................................................................................T----------------------------------------------------------------------------------------------------------ATC------TTCGCATCTGGTACACG---------------------------------------------------.........................................................................................................................................................................................................................................................................2111.00101000000000000000
...........................TGCTGAGATCTGGATCAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00110000000000000000
....GTCCAGGTCAAGGAGTGCTGC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00110000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................TATATTCAGTTTCCACA-CGGC.....................................................................................................2111.00110000000000000000
..............................................................T---------------ACAAT----------------------------------------------------------------------------------------------------------ATC------TTCGCATCTGGT.................................................................................................................................................................................................................................................................................................................................2111.00110000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................CGATAAAT--ATACACAAGGC-AG.....................................................................2111.00101000000000000000
.....................................................................................................................................................................................................................................................................................................................................................CATGAGAAAG--GAGGGA-TTAAC......................................................................................................................................................................2111.00100010000000000000
.................................................................................................................................................................................................................................................................................................................................................................................CAATGCTAATT-TAATAACGT.............................................................................................................................................2011.00110000000000000000
..............................................................................ACAAT----------------------------------------------------------------------------------------------------------ATC------TTCGCATCTGGT.................................................................................................................................................................................................................................................................................................................................2011.00101000000000000000
.......................GCTGTGCTGAGATCTGGAT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00101000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................TAAAT--ATACACAAGGC-AGAA...................................................................2011.00100000100000000000
droSec2
ATTCGTCCAGGTCAAGGAGTGCTGCTGTGCTGAGATCTGGATCAAGAAGTGTAAGTACGAGAT---------------ACAAT----------------------------------------------------------------------------------------------------------ATC------TTCGCATCTGGTAGCAC--------------------------------------------------GA-------------ATATATCC-GTGCTAAAT------GCCCATGC--------------CACTC-------ACACATGAGAAAG--GAGGGA-TTAACAAAGCAATGCTAATT-TAATAACGTAAACATAC-TTCCCCGATTATATTCAGTTTCCACA-CGGCG---CCTTCGATAAAT--ATACACAAGGC-AGAAA--AA--------AATGC-------------------------------------C--AGAGA-GATSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
.................AGTGCTGCTGTGCTGAGATCTGG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010100
.......................GCTGTGCTGAGATCTGGAT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010100
.............................................GAAGTGTAAGTACGAGAT---------------ACA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010001
.................................GATCTGGATCAAGAAGTGGC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010100
...........................................................................................................................................................................................................................................................................................................................................................................................................................ATTCAGTTTCCACA-CGGCG---CC...............................................................................................2111.0011000
.............................................................................................................................................................................................ATC------TTCGCATCTGGTAGCAC--------------------------------------------------G.........................................................................................................................................................................................................................................................................2111.0011000
.............AAGGAGTGCTGCTGTGCTGA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010100
....................GCTGCTGTGCTGAGATCTGG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0011000
....GTCCAGGTCAAGGAGTGCTGC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010100
dm3
ATTCGTCCAGGTCAAGGAGTGCTGCTGTGCTGAGATCTGGATCAAGAAGTGTAAGTACTAGAT---------------ACAAC--T-------GCCAACCC----------------CTAGGGCAT----------------------------------TCGTGG----------------------AATC------ACCTCATCTGGTAGCTT--------------------------------------------------G--------------ATATATCC-GTGCTAAAT------GCCCATGC--------------CACTCC------ACACATGAGAAAG--G-GGGA-TTAACAAAGCAATGCTAATT-TAATAACGTAAACATAC-TTCCCCGATTATATTCAATTTCCACA-CGGCG---CCTTCGATAAAT--ATACACAAGCC-AGAAA--AAA------AAATGC-------------------------------------C--AGAGA-GATSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
........................CTGTGCTGAGATCTGGATCA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2012.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................ATCTGGATCAAGAAGTGTAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2112.0020000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................GATAAAT--ATACACAAGCC-AGA....................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................TGCTGCTGTGCTGAGATCTGG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000
..TCGTCCAGGTCAAGGAGT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................CTCC------ACACATGAGAAAG--G-GGG.............................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...CGTCCAGGTCAAGGAGTGCT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.TTCGTCCAGGTCAAGGAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000
.......................GCTGTGCTGAGATCTGGATCAAGA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................GCTGAGATCTGGATCAAGAAGT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......CCAGGTCAAGGAGTGCTGCTG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000
..........................GTGCTGAGATCTGGATCAAGAAGTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAA--AAA------AAATGC-------------------------------------C--AGAGA-G..2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000
...........................TGCTGAGATCTGGATCAAGAA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000
......................TGCTGTGCTGAGATCTGG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................TATTCAATTTCCACA-CGGCG---C................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000
........................CTGTGCTGAGATCTGGATCAAT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000
.............AAGGAGTGCTGCTGTGCTGAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000
.........GGTCAAGGAGTGCTGCTGTGCTGAGA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000
..........................GTGCTGAGATCTGGATCAAGA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000
..............................TGAGATCTGGATCAAGAAGTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................TATATTCAATTTCCACA-CGGC.....................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................GTGCTGAGATCTGGATCAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000
.....................CTGCTGTGCTGAGATCTGGATC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................TCTGGTAGCTT--------------------------------------------------G--------------ATATATCC-..................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000
..........................................................TAGAT---------------ACAAC--T-------GCCAACCC----------------CT............................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................ATTCAATTTCCACA-CGGCG---CC...............................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................GCTGCTGTGCTGAGATCTGGATCAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000
........AGGTCAAGGAGTGCTGCTGTG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000
......................................................................................................................TAGGGCAT----------------------------------TCGTGG----------------------AATC------ACC..........................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000
............................................................................................................................AT----------------------------------TCGTGG----------------------AATC------ACCTCATCTGG..................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droEre2
ATTCGTGCAGGTCAAGGAATGCTGCTGTGCTGAGATCTGGATCAAGAAGTGTAAGTAGTAGATCCACCAGATC---------------------------------------------------------------CACAAATGCCAACTCCTCTGGCACTCGGGGC----------------------ACC------ATCGCATCTGGAAGCCC------------------------------------------------------------------AATGGCC-GTGCTAAAT------GCCCATGC--------------CACTC-------ACACACGAGAA------GGGA-TTAACAAAGCAATGCTAATT-TAATAACGTAAACATAC-TTCTGCAATTA--TTCTGTTTCCACA-CGGCG---CCTTCGATAAAT--ATACACAAGCC-AGAAA--TAACAGCAACAATAG-------------------------------------C--AGAGA-GATSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
............................GCTGAGATCTGGATCAAGAAGTGGC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0011000000
..............................................................................................................................................TGCCAACTCCTCTGGCACTCGGGGC----------------------ACC------.............................................................................................................................................................................................................................................................................................................................................2811.0011000000
..............................................................................................................................................................................................................................................................................................................................................................................................AATAACGTAAACATAC-TTCTG...............................................................................................................................2111.0011000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................A--TTCTGTTTCCACA-CGGCG---CC...............................................................................................2111.0011000000
..........GTCAAGGAATGCTGCTGTGCTGA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000100
............................................................................................................................................................................................................TCTGGAAGCCC------------------------------------------------------------------AATGGCC-GTGCTAAA..........................................................................................................................................................................................................................................2611.0011000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAA--TAACAGCAACAATAG-------------------------------------C--AG.......2111.0010000010
...............................................................................................................................................................................................................................................................................................C-GTGCTAAAT------GCCCATGC--------------CAC..........................................................................................................................................................................................................2111.0011000000
..........GTCAAGGAATGCTGCTGTGCTGAGA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000100
..................................................GTAAGTAGTAGATCCACCAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000010
.................................GATCTGGATCAAGAAGTGGC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2020.5010000100
droYak3
ATTCGTGCAGGTCAAGGAATGCTGCTGTGCTGAGATCTGGATCAAGAAGTGTAAGTACCAGTT---------CTACAGACGAA--T-------GAAAACTC-------------------------------------------------------------GTGGG----------------------ATC------ATCGCATCTGGAAGCAC------------------------------------------------------------------AGTATGA-GTGCTAAAT------GCCCATGC--------------CACTC-------ACACATGAGAA------GGGA-TTAACAAAGCAATGCTAATT-TAATAACGTAAACATAC-TTCTGCGATTA--TTCTGTTTCCACA-CGGCG---CCTTCGATAAAT--ATACACAAGCC-AGAAA--TAACAGCAACAATAG-------------------------------------C--AGGGA-GAGSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
....................GCTGCTGTGCTGAGATCTG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1920.50101000000000
............................GCTGAGATCTGGATCAAGA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1920.50101000000000
..............AGGAATGCTGCTGTGCTGAGAT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2220.50100000010000
.........GGTCAAGGAATGCTGCTGTGCTGAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2520.50100000010000
droEug1
ATTTGTGCAGGTCAAGGAGTGCTGTTGCGCTGAGATCTGGTTTAAAAAGTGTAAGTATCATAA---------------ACATT--T---------------GCATTACTTACTTCCCATAGAGCAT----------------------------------TTATCA-----------GCTTAACTCGTAATA------TTTTCATCTGGAATAAC------------------------------------------------------------------AAAATCC-ATGCTATAT------GCCCATGC--------------CACTC-------ACACATGAGGA------GGGA-TTAACAAAGCAATGCTAATT-TAATAATGTAAATATAC-TTTTTCGATGA--TTCTGTTTCAACA-CGGCA---CCTTCGATAAAC--ATTCAAATACC-AGAAA--TAACAGCAACAATAG-------------------------------------C--CAAGA-GATSizeHit CountTotal NormTotal
No Reads
droBia1
ATTCGTGCAGGTCAAGGAGTGCTGCTGCGCTGAGATCTGGTTCAAGAAGTGTAAGTATCATTC---------------ACGTT--T------------------------------------------------------------------------------------------------GCTCATAGTC------ATCGCATCTGGCACCAC------------------------------------------------------------------AATATCC-ACGCTA-AT------GTCCATGC--------------CTCTC-------ACACATGGGGA------GGGA-TTAACAAATCAATGCTAATT-TAATAACGTAAATATAC-TTCTCCGATGA--TTCTGTTTCCACA-CGGCG---CCTTCGATAAAC--ATACACATACC-AGAAA--TAACAGCAACAATGG-------------------------------------A--CGAGA-GATSizeHit CountTotal NormTotal
No Reads
droTak1
ATTCGTCCAGGTCAAGGAGTGCTGCTGCGCTGAGATCTGGCTCAAGAAGTGTAAGTATTTCAT---------------ATATT--T-------GGAAACT-------------ACCAAT-AGGCAT----------------------------------TCGTGGA----------ACTTTGCTCGTAGTC------ATCGCATCTGGAAGCAC------------------------------------------------------------------AATATCC-ATGCTAAAT------GCTCATGC--------------CACTC-------ACACATGAGGA------GGGA-TTAACAAAGCAATGCTAATT-TAATAACGTAAATATAC-TTTTTCGATGA--TTCTGTTTCCACA-CGGCG---CCTTCGATAAAC--ATACACATACC-AGAAA--TAACAGCAACAATGG-------------------------------------T--GGAGA-GATSizeHit CountTotal NormTotal
No Reads
droEle1
ATTTGGGGCGGTCAAGGAGTGCTGCTGCGCTGAGATCTGGATCAAGAAGTGTAAGTATTATAC---------------ATACA--T-------GAACACTATCATGCCTCACTCCCAATGAGTTAT----------------------------------TCACGGT----------GCTCTGCTTGAAGTC------ATCGCATCTGGAAATAC------------------------------------------------------------------AATATCC-ATGCTAAAA------GCCCACGC--------------CACTC-------ACACATGAGAA------GGGA-TTAACAAAGCAATGCTAATT-TAATAATGTAAATACAC-TTCTTCGATGA--TTTTGTTTCCACA-CGGCG---CCTTCGATAAAC--ATACACATACC-AGAAA--TAACAGCAACAATGA-------------------------------ATG--CC--CAAGA-GATSizeHit CountTotal NormTotal
No Reads
droRho1
ATTTGCTGCGGTCAAGGAGTGCTGCTGCGCTGAGATCTGGATCAAGAAGTGTAAGTATAAGGT---------------ATATT--T-------GGAAACTCTCATGCTTCACTCCCAATGAGGCGT----------------------------------TCATGGG----------GCTCCGCTCATAGTC------ATTGCATCTGGAATCAC------------------------------------------------------------------AATATCC-ATGCTAAAT------GCCCATGC--------------CACTC-------ACACATGGGGA------GGGA-TTAACAAAGCAATGCTAATT-TAATAATGTAAATACAT-TTTTTCGATCA--TTCTGTTTCCACA-CGGCG---CCTTCTATAAAC--ATACACATACC-AGAAA--TAACAGCAACAATGG-------------------------------------C--CAAGA-GATSizeHit CountTotal NormTotal
No Reads
droFic1
ATTCGTTGAGATCAAGGAGTGCTGCTGCGCTGAGATCTGGCTAAAGAAGTGTAAGTATTGAGT---------------TCATT--T-GAA--TAGATA---------CCCACCTCCGATGAGGTGT----------------------------------TCATGGG----------TATCTGATCATAGTC------AATGCACCTGGAACCAC------------------------------------------------------------------AATTCAC-ATGCTAAAT------GCCCATGC--------------CACTC-------ACACATGGGGA------GGGA-TTAACAAAGCGATGCTAATT-TAATATTGTAAATACAC-CTTTTCGATGA--ATCTGTTTCCACT-CGGCG---CCTTCGATAAAC--ATACACATACC-AGAAA--TAACAGCAACAATGG-------------------------------------CCAAGAGA-GATSizeHit CountTotal NormTotal
No Reads
droKik1
CTTCGCGGAGGTCAAGGAGTGCTGCTGCGCTGGGACCTGGGTCAAGAAGTGTAAGTATTTTCC--ATCCA------ATACG-A--T-------GGAGACT----------------------------------------------------------------------------------GCACGTAGCCATAGTGTTCGCATCTGGTATCAC------------------------------------------------------------------ACTAGCA-ATGCTAAAT------GCTCATGC--------------CACTCCGAACGAACACACGGAGC------GGGA-TTAACAAAGCGATGCTAATT-TAATAATGTAAATATACAGTTTTCGATGA--TTCTGTTTCCACAACGGCG---CCTTCGATAAAC--ATACAAATACC-AGAAA--TAACAGCAACAATGG-------------------------------------C--CGAGA-GATSizeHit CountTotal NormTotal
No Reads
droAna3
TTTCGCAGAAGTCAAGGAGTGCTGCTGCGCCAAGGCATTTTACAGAAAGTGTAAGTATCAAGT---------------GTATTCCTTAAAACTGGGAGTTCG---------------GTGGG------------------------------------------------------------GCACGTAGGC------ATTTCATTTGGAACCAC------------------------------------------------------AG---------CGGCGGCA-CTGCTAAAT------GCTCATGC--------------CACTA-------ACACATGGGGA------TGGATTTAACAAAGCGATGCTAATT-TAATAATGTAAATATA--------------------------CA-CGGCG---CCTTCGATAAACACATGCACATACC-AGAAAAATAACAGCAACAATGG-------------------------------------G--CCGGA-GATSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
.............................................................................................................................................................................................................TTGGAACCAC------------------------------------------------------AG---------CGGCGGCA-..................................................................................................................................................................................................................................................2012.002000101
.........AGTCAAGGAGTGCTGCTGCGCCAAGGC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2712.002200000
TTTCGCAGAAGTCAAGGAGTGCTGCT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.001100000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................CC-AGAAAAATAACAGCAACAA....................................................2111.001100000
.............AAGGAGTGCTGCTGCGCCAAGG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001100000
..................GTGCTGCTGCGCCAAGGCAT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001100000
................GAGTGCTGCTGCGCCAAGG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001100000
...........TCAAGGAGTGCTGCTGCGC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001100000
........................................................................................................................................................................................................TTCATTTGGAACCAC------------------------------------------------------AG---------CGG........................................................................................................................................................................................................................................................2011.001100000
.......GAAGTCAAGGAGTGCTGCTG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001100000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATAACAGCAACAATGG-------------------------------------G--CCG......2111.001100000
..........................................................................................................................................................................................................CATTTGGAACCAC------------------------------------------------------AG---------CGGCGG.....................................................................................................................................................................................................................................................2111.001000001
................GAGTGCTGCTGCGCCAAGGCA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001100000
..TCGCAGAAGTCAAGGAGTG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001100000
...........TCAAGGAGTGCTGCTGCGCCAAGGC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.001100000
...............................................................................................................................................................................................C------ATTTCATTTGGAACCAC------------------------------------------------------AG---------C..........................................................................................................................................................................................................................................................2111.001100000
.........AGTCAAGGAGTGCTGCTG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.001100000
.............................................................GT---------------GTATTCCTTAAAACTGGGA..................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000010
droBip1
GTTCGCAGAAGTCAAGGAGTGCTGCTGCGCCAAGGCCTTTTACAACAAGTGTAAGTATCAAGT---------------GCATTCCTTGAAGCGAGAAGTTCG---------------GT------------G-------------------------------------------------GGCACGTAGGC------ACATCATTTGGAACCAC------------------------------------------------------------------AGTGGCA-CTGCTGAAT------GCTCATGG--------------CACTA-------ACACATGGGGAT-----GGGT-TTAACAAAGCGATGCTAATT-TAATAATGTAAATATA--------------------------CA-CGGCG---CCTTCGATAAAC--ATGCACATACC-ACAAAAATAACACCAACAATGG-------------------------------------G--CGGGA-GATSizeHit CountTotal NormTotal
No Reads
dp5
CTTCGACGAGGTCAAAGAATGCTGCTGTGCACCTGCCTGGGCCAAGAAGTGTAAGTACCAGAT---------------ACAAA--T-------AGAGATTCGCATGA----ATTCGAATGAGGCATCCACTG------------GCACTGCCACTGCCACTGGCACT----------------------GCCATCGT----GTGTGTGGAGTCAC------------------------------------------------------------------AATATCTAATGCTAGATGCTAAATCGCATGC--------------CACTC-------ACACATGGCCA------GGGA-TTAACAAAGCAATGCTAATT-TAATACTGTAAATATAC-TTTTTCAATGA--TTCCATTTCCACA-CGGCG---CCTTCGATAAAT--AAACAAATGCC-AAAAA--CAACAACAACAACAA------TAATAATAGGCAGCAAAATCATCCAATATTCC--ATAGC-CCTSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
.............................................................................................................................................................................................................................................................................................TCTAATGCTAGATGCTAAATC.................................................................................................................................................................................................................................2112.0020200000000
......................................................................................................................TGAGGCATCCACTG------------GCACTGC............................................................................................................................................................................................................................................................................................................................................................................................2112.0020200000000
......CGAGGTCAAAGAATGCTGCT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2012.0020000002000
...CGACGAGGTCAAAGAATGCTG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010100000000
......................TGCTGTGCACCTGCCTGGGCC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010100000000
.....................................................................................................................................................................CT----------------------GCCATCGT----GTGTGTGGAGT...............................................................................................................................................................................................................................................................................................................................2111.0010100000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................TGA--TTCCATTTCCACA-CGGCG---T................................................................................................2211.0010100000000
.......................................................................................................ATGA----ATTCGAATGAGGCATCC...................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010100000000
................................................................................................................TTCGAATGAGGCATCCACTG------------...................................................................................................................................................................................................................................................................................................................................................................................................2011.0010100000000
.....................................................................................................................ATGAGGCATCCACTG------------GCACTG.............................................................................................................................................................................................................................................................................................................................................................................................2111.0010100000000
......................TGCTGTGCACCTGCCTGGGC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010100000000
.........................................................................................................................................................CTGCCACTGGCACT----------------------GCCATCG...............................................................................................................................................................................................................................................................................................................................................2111.0010100000000
......................................................................................................CATGA----ATTCGAATGAGGCATC....................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010100000000
........................................................................................................................................................................................................................................................................................................................................................................................................................GA--TTCCATTTCCACA-CGGCG---C................................................................................................2111.0010000010000
..........................GTGCACCTGCCTGGGCCAAGAAGT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000001000
................................................................................................................TTCGAATGAGGCATCCACTG------------G..................................................................................................................................................................................................................................................................................................................................................................................................2111.0010100000000
....................................................................................................CGCATGA----ATTCGAATGAGGCATC....................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010100000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................A--TTCCATTTCCACA-CGGCG---CC...............................................................................................2111.0010000010000
........................................................................................................TGA----ATTCGAATGAGGCATCCA..................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010100000000
....................................................................................................................AATGAGGCATCCACTG------------GCACT..............................................................................................................................................................................................................................................................................................................................................................................................2111.0010100000000
.......................GCTGTGCACCTGCCTGGGCC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010100000000
...............................................................................................................................................................................................................................................................................................................................................................................................ATACTGTAAATATAC-TTTTTC..............................................................................................................................2111.0010100000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGCC-AAAAA--CAACAACAACA.....................................................2111.0010100000000
........AGGTCAAAGAATGCTGCTGTG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010100000000
.....................CTGCTGTGCACCTGCCTGG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010100000000
.................................................................................................................................CTG------------GCACTGCCACTGCCACTG.................................................................................................................................................................................................................................................................................................................................................................................21200.0510100000000
droPer2
CTTCGACGAGGTCAAAGAATGCTGCTGTGCACCTGCCTGGGCCAAGAAGTGTAAGTACCAGAT---------------ACAAA--T-------AGAGATTCGCATGA----ATTCGAATGAGGCATCCACTGGCACTGGCACTGGCACTGCCACTGCCACTGGCACT----------------------GCC------ATCGTGTGT--------------------------------------------------------------GTGTGGAGTCACAATATCTAATGCTAGATGCTAAATCGCATGC--------------CACTC-------ACACATGGCCA------GGGA-TTAACAAAGCAATGCTAATT-TAATACTGTAAATATAC-TTTTTCAATGA--TTCCATTTCCACA-CGGCG---CCTTCGATAAAT--AAACAAATGCC-AAAAA--CAACAACAACAACAACAACAATAATAATAGGCAGCAAAATCATCCAATATTCC--ATAGC-CCTSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
....................................CTGGGCCAAGAAGTGTAAGTG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000001
............................................................................................................................................................................................................................................................................................................................................................................................................................TTCCATTTCCACA-CGGCG---CC...............................................................................................2011.001010000
.......................................................................................................................................................................................................TCGTGTGT--------------------------------------------------------------GTGTGGAGTCA...........................................................................................................................................................................................................................................................1911.001000001
droWil2
TTTTGAAGAGGTGAAAGAATGTTGTTGTGCCAGTGCTTTGGCCAAAGAATGTAAGTAATCCGT---------------TTATA--T-AC--CTATAT-------------------------GTA----------------------------------------------------------------------------TTATTAGGTATATA------------------------------------------------------------------AAAATCT-ATGATATAT------ATGTACAT---------------ATGT-------ACACATGTTTTGGGCGGGGGA-TTAACAATGCTTTGCTAATTTTTATAACGTAAATAGAT-CTCT-----------CGATTTCCACA-TAGCGAAGGCGCCGATAAAT--AAACAA--ATC-AAAA-------------------------------------------------------------GAGAACSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
.........GGTGAAAGAATGTTGTTGTGCCAGT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.00100100
..............AAGAATGTTGTTGTGCCAGTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00101000
..................ATGTTGTTGTGCCAGTGC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.00101000
...............................AGTGCTTTGGCCAAAGAATGGCG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.00100010
droVir3
CTTCGAGGAGGTCAAGGAATGCTGCTGTGCAGCCGCTTTGGTCAGCGAGTGTAAGTGTGATTG---------------GAATTTTT---------------TTTTGGTTGAGTTTAGGCAATATTT---------------------------------------GTTATTTAACCAGCCC------------------------------------------CTTGGATATATGATCAA-AAAATACTTATATAGGTGCT------ACAC---------TGAAATCA-ATGCTAAAC------ACACACAC---------------AC---------ACACCCATCTT------AAGA-TCAACAAAACGGTGCTAATT-CCATAA---------------------------------------------------------AC--------AAACCTAAGAA--AGCCAGCAGAAAT------------------------------------------------GATSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
.....................................TTGGTCAGCGAGTGTAAGTG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001000000000000000000000000000000000000000000000000000000000000010
.......GAGGTCAAGGAATGCTGCTGT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000000000000000000000000000010000000000000000000000000000000000
..........................................................................................................................................................................TTAACCAGCCC------------------------------------------CTTGGATATA..........................................................................................................................................................................................................................................................................................................2111.001001000000000000000000000000000000000000000000000000000000000000
.........................TGTGCAGCCGCTTTGGTCAGCGA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001000000000000000010000000000000000000000000000000000000000000000
..................................................GTAAGTGTGATTG---------------GAATTTTT---------------..............................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001001000000000000000000000000000000000000000000000000000000000000
.........GGTCAAGGAATGCTGCTGTGCA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001000000000000000000000000000000000000000000000000000000000000010
droMoj3
CTTCGAGGAAGTCAAGGAATGCTGTTGTGTATCCGCTTTTCTCAGAGAGTGTAAGTGCCATTG---------------GAATG--T---------------TTATGGAAGAGTTGGAACAAGT--T---------------------------------------GGTATTTGGACA------------------------------------GCAGCAGCACAGCAGATCAATGATCAATAAAATACTTATATATGTATAACGTGTATAC-------------ATAA-ACACTCAGC------AGCCA---------ACGCTCACCACTC---ATACACACCCAGTTG------AAGA-TTAACAAAGCAATGCTAATT-TTATAATGTAAATAG--------------------------------------TACTGGATAGAC-------------------------------------------------------------------------C--TGCAA-GATSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
..........GTCAAGGAATGCTGTTGT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1812.002200000
......................................................................................................................................................................GTATTTGGACA------------------------------------GCAGCAGCACAGCA................................................................................................................................................................................................................................................................................................................2511.001000001
..................................................................................................................................................................................................................................................................................................................................................................................................ATGTAAATAG--------------------------------------TACTGGAT.........................................................................................1811.001100000
.........................TGTGTATCCGCTTTTCTCAGAGAGTGGC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.001000001
..........GTCAAGGAATGCTGTTGTGTA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000001
...............................................................................................................................................................................................................................AGCAGATCAATGATCAATAAAATACTT.........................................................................................................................................................................................................................................................................................2711.001100000
.............................TATCCGCTTTTCTCAGAGAGT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001100000
...CGAGGAAGTCAAGGAATGCTGTTGTGT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.001100000
..................ATGCTGTTGTGTATCCGC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.001100000
..........................................................................................................................................................................................................................................................................................................................................................................................................AG--------------------------------------TACTGGATAGAC-------------------------------------------------------------------------C--TGC......1811.001100000
CTTCGAGGAAGTCAAGGAATGCTGTT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.001100000
...............................................................................................................................................................................................................................................................................................................................................................................................ATAATGTAAATAG--------------------------------------TACTGGATA........................................................................................2211.001100000
.................AATGCTGTTGTGTATCCGCTTTTCT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.001100000
.................AATGCTGTTGTGTATCCGCTTTTC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.001000001
............................GTATCCGCTTTTCTCAGAGAGT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001100000
droGri2
CTTTGAGGAAGTCAAGGAATGCTGTTGCGCATCCGCTTTGGTCCGCGAGTGTAAGTGTGATTA---------------GAATC--T---------------GTATGAATCACTTTCAACAAGATAT---------------------------------------TTTATTTGAAGAGCAC------------------------------------------TGGATATATATGTCCGT-AATATACTAATACTTGTGC-------ATAC---------AGAAATCA-ATGCTAAAT------GCTGGGGTTCCGCAACATTCAACACTC---ACACACACCCATCTA------GGGA-TTAACAAAGCGATGCTAATT-TCATAATGTAAATAGAC-ACGATCGCT-----TCTG------------------ATTCGATAAAC--AAACCTAAGAA-AG-------GCAGCA--------------------------------------------------GATCATSizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads

Generated: 05/19/2015 at 12:17 AM