dsi_12893

Antisense to three_prime_UTR [2r_4679149_4680275_-]; Antisense to exon [2r_4679149_4680493_-]

CATATAAAAGAATAGCGTCTCGTCTCGTGCAAATTTTGGTGCAGACTTATGTAAATATTGGAAAGTTTTAATTTCTCTGTATGTCGTTTCATTCGTGTTGTTCTAGATTTTTGTTTTTAGATTTAGATTCTTTGTTTCCATTTTTCATTTAAGATATTCGTACCAAAGTTAGTTTCAGTCGTGTAGTGGACACATAGGTAAAGCTTTAGTTGCGATCGGGAATCTGATCGCAAGTGAGTGACATGTAACT ****************************************************************************************************************.....((((.((((((((((..........((......)).........)))))..))))).))))...........*********************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	SRR618934 dsim w501 ovaries	SRR553488 RT_0-2 hours eggs	SRR553486 Makindu_3 day-old ovaries	SRR902009 testis	M023 head	SRR553487 NRT_0-2 hours eggs	M024 male body	O001 Testis	SRR553485 Chicharo_3 day-old ovaries
...........................................................................................................................................................................GTTTCCGTCGTGTAG................................................................	15	1	18	4.39	79	75	2	0	0	0	1	0	0	1
...........................................................................................................................................................................GTTTCCGTCGTGTAGTGG.............................................................	18	1	4	4.00	16	12	3	0	0	0	1	0	0	0
...........................................................................................................................................................................GTTTCCGTCGTGTAGTG..............................................................	17	1	4	2.50	10	10	0	0	0	0	0	0	0	0
....................................................................................................................................................TGAAGATATTCGTCCCAAAGT.................................................................................	21	2	1	2.00	2	0	1	1	0	0	0	0	0	0
...........................................................................................................................................................................GTTTCCGTCGTGTAGT...............................................................	16	1	6	1.33	8	8	0	0	0	0	0	0	0	0
..................................................................................................................TTTTAGATTTAGATTCTTTGT...................................................................................................................	21	0	1	1.00	1	0	0	0	0	1	0	0	0	0
..........................................................................................................................................................................AGTTTCAGTCGTGTAGTGGAC...........................................................	21	0	1	1.00	1	0	0	0	0	0	0	1	0	0
................................................................................ATGTCGTTTCATTCGTGTTGT.....................................................................................................................................................	21	0	1	1.00	1	0	0	0	0	0	0	0	1	0
........................................................................................................................................................................TTAGTTTCAGTCGTGTAGTGG.............................................................	21	0	1	1.00	1	1	0	0	0	0	0	0	0	0
.....................................................................................................................................................AAAGATATTCGTACCAAAGTTAGT.............................................................................	24	1	1	1.00	1	0	0	1	0	0	0	0	0	0
.......................................................................................................................................................................................................AAAGCTTTAGTTGCGATCGGG..............................	21	0	1	1.00	1	0	1	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................GGAATCTGATCGCAAGTGAGT...........	21	0	1	1.00	1	0	1	0	0	0	0	0	0	0
...........................................................................................................................................................................GTTTCCGTCGTGTAGCGGACT..........................................................	21	3	1	1.00	1	1	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................AGTGAGTGACATGTAACT	18	0	1	1.00	1	0	0	0	0	1	0	0	0	0
.ATATAAAAGAATAGCGTCTCG....................................................................................................................................................................................................................................	21	0	1	1.00	1	0	0	0	1	0	0	0	0	0
........................................................................................................................................................................................................................CGGGAATCTGATCGCAAGTGA.............	21	0	1	1.00	1	1	0	0	0	0	0	0	0	0
...............................................................................TATGTCGCTTCATTCGT..........................................................................................................................................................	17	1	1	1.00	1	0	0	0	0	0	1	0	0	0
.........................................................................................................................................................................................................................GGGAATCTGATCGCAGGTGAG............	21	1	1	1.00	1	0	0	0	1	0	0	0	0	0
.....................................................................................................................................................GAAGATATTCGTCCCAAAGT.................................................................................	20	2	2	0.50	1	0	0	1	0	0	0	0	0	0
...........................................................................................................................................................................GTTTCCGTAGTGTAGTGGA............................................................	19	2	13	0.38	5	0	0	5	0	0	0	0	0	0
.............................................................................................................................................................................TTCAGTCGTATAGTGG.............................................................	16	1	3	0.33	1	0	0	1	0	0	0	0	0	0
...........................................................................................................................................................................GGTTCTGTCGTGTAGTGG.............................................................	18	2	3	0.33	1	0	0	0	0	0	1	0	0	0
......................................................................ATGTCTCTGAATGTCGTT..................................................................................................................................................................	18	2	4	0.25	1	1	0	0	0	0	0	0	0	0
..........................................................................................................................................................................AGTTTCCGTCGTGTAGCGGA............................................................	20	2	4	0.25	1	0	0	0	1	0	0	0	0	0
............................................................................................................................................................................TTTCCGTCGTGTAGTGG.............................................................	17	1	4	0.25	1	1	0	0	0	0	0	0	0	0
...........................................................................................................................................................................GTTTCCGTCGTGTAGTGA.............................................................	18	2	5	0.20	1	1	0	0	0	0	0	0	0	0
.................................................................................TGTCGCTTCATTCGT..........................................................................................................................................................	15	1	10	0.20	2	0	1	0	0	0	1	0	0	0
....................................................................................................................................................TGAAGATATTCGTCCCAAAGA.................................................................................	21	3	5	0.20	1	0	0	1	0	0	0	0	0	0
.....................................................................................................................................................GAAGATATTCGTCCCCAAGT.................................................................................	20	3	7	0.14	1	0	0	1	0	0	0	0	0	0
........................................................................TTCTCTGATTGTCGTTCCATT.............................................................................................................................................................	21	3	8	0.13	1	0	0	1	0	0	0	0	0	0
...........................................................................................................................................................................GTTTCCGTCGTGGAGTGG.............................................................	18	2	8	0.13	1	1	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................GTGAGTAACACGTAACT	17	2	9	0.11	1	0	1	0	0	0	0	0	0	0
......................TCTAGTGCAGATTTTGGTGG................................................................................................................................................................................................................	20	3	12	0.08	1	0	1	0	0	0	0	0	0	0
...........................................................................................................................................................................GTTTCCGCCGTGTAGTG..............................................................	17	2	15	0.07	1	1	0	0	0	0	0	0	0	0
.....................GTCTCGTGTAAAGTATGGT..................................................................................................................................................................................................................	19	3	16	0.06	1	0	0	1	0	0	0	0	0	0
...........................................................................................................................................................................GTTTCCGTCGTGTAGCGGAA...........................................................	20	3	16	0.06	1	0	0	0	1	0	0	0	0	0
..................................................................................GTCGTTTCATTAGTTCTGTT....................................................................................................................................................	20	3	17	0.06	1	1	0	0	0	0	0	0	0	0
.......................CTAGTGCAGATTTTGGT..................................................................................................................................................................................................................	17	2	18	0.06	1	0	0	1	0	0	0	0	0	0
...............................................................................TATGTCGCATCATTCGT..........................................................................................................................................................	17	2	19	0.05	1	0	0	0	0	0	1	0	0	0
...........................................................................................................................................................................GTTTCTGTCGTGTAGC...............................................................	16	2	20	0.05	1	1	0	0	0	0	0	0	0	0
...............................................................AGCTATAAGTTCTCTGTAT........................................................................................................................................................................	19	3	20	0.05	1	0	0	0	0	0	0	1	0	0
...........................................................................................................................................................................GTTTCCGTCGTGTAGAG..............................................................	17	2	20	0.05	1	1	0	0	0	0	0	0	0	0
...........................................................................................................................................................................GTTTCCGTCGTGTAGA...............................................................	16	2	20	0.05	1	0	0	1	0	0	0	0	0	0
...........................................................................................................................................................................GTTTCTGTAGTGTAGTGG.............................................................	18	2	20	0.05	1	0	1	0	0	0	0	0	0	0

########################################################################################################################################################################################################################################################## GTATATTTTCTTATCGCAGAGCAGAGCACGTTTAAAACCACGTCTGAATACATTTATAACCTTTCAAAATTAAAGAGACATACAGCAAAGTAAGCACAACAAGATCTAAAAACAAAAATCTAAATCTAAGAAACAAAGGTAAAAAGTAAATTCTATAAGCATGGTTTCAATCAAAGTCAGCACATCACCTGTGTATCCATTTCGAAATCAACGCTAGCCCTTAGACTAGCGTTCACTCACTGTACATTGA *********************************************************.....((((.((((((((((..........((......)).........)))))..))))).))))...........****************************************************************************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	SRR902009 testis	SRR553485 Chicharo_3 day-old ovaries	SRR902008 ovaries	SRR553486 Makindu_3 day-old ovaries	M053 female body	SRR618934 dsim w501 ovaries	SRR553487 NRT_0-2 hours eggs	SRR553488 RT_0-2 hours eggs	M024 male body	M023 head	O001 Testis	M025 embryo
.................................................................................ACAGCAAAGTAAGCACAACAAGATCT...............................................................................................................................................	26	0	1	18.00	18	13	0	5	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................AGACTAGCGTTCACTCACTGTACAT...	25	0	1	9.00	9	0	2	0	6	0	0	1	0	0	0	0	0
........................................................................................................................................AGGTAAAAAGTAAATTCTATAAGCATGGT.....................................................................................	29	0	1	8.00	8	0	2	0	6	0	0	0	0	0	0	0	0
..................................................................................CAGCAAAGTAAGCACAACAAGATCT...............................................................................................................................................	25	0	1	7.00	7	4	0	3	0	0	0	0	0	0	0	0	0
......TTTCTTATCGCAGAGCAGAGCACGTTT.........................................................................................................................................................................................................................	27	0	1	6.00	6	4	1	1	0	0	0	0	0	0	0	0	0
.................................................................................ACAGCAAAGTAAGCACAACAAGATCTA..............................................................................................................................................	27	0	1	5.00	5	3	0	1	0	1	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................AGACTAGCGTTCACTCACTGTACATT..	26	0	1	5.00	5	0	3	0	2	0	0	0	0	0	0	0	0
.......TTCTTATCGCAGAGCAGAGCACGTTT.........................................................................................................................................................................................................................	26	0	1	5.00	5	0	0	5	0	0	0	0	0	0	0	0	0
.......TTCTTATCGCAGAGCAGAGCACGTT..........................................................................................................................................................................................................................	25	0	1	4.00	4	3	0	1	0	0	0	0	0	0	0	0	0
..........TTATCGCAGAGCAGAGCACGT...........................................................................................................................................................................................................................	21	0	1	4.00	4	4	0	0	0	0	0	0	0	0	0	0	0
...............................TTAAAACCACGTCTGAATACATTT...................................................................................................................................................................................................	24	0	1	4.00	4	0	1	0	1	0	0	1	1	0	0	0	0
.............................................................................................................................CTAAGAAACAAAGGTAAAAAGTAAATT..................................................................................................	27	0	1	3.00	3	0	3	0	0	0	0	0	0	0	0	0	0
.................AGAGCAGAGCACGTTTAAAACCACGT...............................................................................................................................................................................................................	26	0	1	3.00	3	0	1	0	1	1	0	0	0	0	0	0	0
...............................................................................ATACAGCAAAGTAAGCACAACAAGAT.................................................................................................................................................	26	0	1	3.00	3	2	0	1	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................GGTTTCAATCAAAGTCAGCACATC................................................................	24	0	1	3.00	3	0	2	0	1	0	0	0	0	0	0	0	0
......TTTCTTATCGCAGAGCAGAGCACGTT..........................................................................................................................................................................................................................	26	0	1	3.00	3	3	0	0	0	0	0	0	0	0	0	0	0
........TCTTATCGCAGAGCAGAGCACGTTT.........................................................................................................................................................................................................................	25	0	1	2.00	2	1	0	1	0	0	0	0	0	0	0	0	0
..............CGCAGAGCAGAGCACGTTTAAAACCA..................................................................................................................................................................................................................	26	0	1	2.00	2	0	0	2	0	0	0	0	0	0	0	0	0
..................................................................................CAGCAAAGTAAGCACAACAAGATCTAAA............................................................................................................................................	28	0	1	2.00	2	0	0	2	0	0	0	0	0	0	0	0	0
................................................................................................................................AGAAACAAAGGTAAAAAGTAAATTCTAT..............................................................................................	28	0	1	2.00	2	1	0	0	0	1	0	0	0	0	0	0	0
..................................................................................................................................................................GGTTTCAATCAAAGTCAGCACATCACCT............................................................	28	0	1	2.00	2	0	1	0	0	1	0	0	0	0	0	0	0
.........ATTATCGCAGAGCAGAGCACGT...........................................................................................................................................................................................................................	22	1	1	2.00	2	2	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................AGCCCTTAGACTAGCGTTCACTCAC..........	25	0	1	2.00	2	0	1	0	1	0	0	0	0	0	0	0	0
........TCTTATCGCAGAGCAGAGCACGTT..........................................................................................................................................................................................................................	24	0	1	2.00	2	2	0	0	0	0	0	0	0	0	0	0	0
..............................................................TTCAAAATTAAAGAGACATACAGCAAAGT...............................................................................................................................................................	29	0	1	2.00	2	0	1	0	1	0	0	0	0	0	0	0	0
................................................................................................................................AGAAACAAAGGTAAAAAGTAAATTCT................................................................................................	26	0	1	2.00	2	0	2	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................AAAAAGTAAATTCTATAAGCATGGTTT...................................................................................	27	0	1	2.00	2	1	0	0	0	0	0	1	0	0	0	0	0
................................................................................................................................................AGTAAATTCTATAAGCATGGTTTCAA................................................................................	26	0	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0
.........CTTATCGCAGAGCAGAGCACGTTT.........................................................................................................................................................................................................................	24	0	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................AGTAAATTCTATAAGCATGGTT....................................................................................	22	0	1	1.00	1	0	0	0	0	1	0	0	0	0	0	0	0
.................................................................................TCAGCAAAGTAAGCACAACAAGATCT...............................................................................................................................................	26	1	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0
......................................CACGTCTGAATACATTTATAACCTT...........................................................................................................................................................................................	25	0	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................ATTCTATAAGCATGGTTTCAATCAAAGT.........................................................................	28	0	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................TTCGAAATCAACGCTAGCCCTTAGACT.......................	27	0	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................AGGTAAAAAGTAAATTCTATAAGCATGGTT....................................................................................	30	0	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0
..................................................................................CAGCAAAGTAAGCACAACAAGATCTA..............................................................................................................................................	26	0	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0
............ATCGCAGAGCAGAGCACGTTTAAAACCA..................................................................................................................................................................................................................	28	0	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0
.................................AAAACCACGTCTGAATACATT....................................................................................................................................................................................................	21	0	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0
.....................................................................................................................................................................TTCAATCAAAGTCAGCACATCACCTGTGT........................................................	29	0	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0
................................................................................AACAGCAAAGTAAGCACAACAAGATCTA..............................................................................................................................................	28	1	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0
...........TATCGCAGAGCAGAGCACGTT..........................................................................................................................................................................................................................	21	0	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................AGCATGGTTTCAATCAAAGTC........................................................................	21	0	1	1.00	1	0	0	0	0	0	0	0	0	1	0	0	0
............ATCGCAGAGCAGAGCACGTTTAAAACGA..................................................................................................................................................................................................................	28	1	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0
.................................................................................ATAGCAAAGTAAGCACAACAAGATCTAA.............................................................................................................................................	28	1	1	1.00	1	0	0	0	0	0	1	0	0	0	0	0	0
.....................................................................................................................................................ATTCTATAAGCATGGTTTCAAT...............................................................................	22	0	1	1.00	1	0	0	0	0	0	0	0	1	0	0	0	0
....................................................................................................................................................ACTTCTATAAGCAGGGTTTCA.................................................................................	21	2	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0
............................................................................................................................................................AAGCATGGTTTCAATCAAAGTCAGCACAT.................................................................	29	0	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................AGCATGGTTTCAATCAAAGTCAGCACAT.................................................................	28	0	1	1.00	1	0	0	0	0	1	0	0	0	0	0	0	0
......................AGAGCACGTTTAAAACCACGTCTGA...........................................................................................................................................................................................................	25	0	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0
.....................................................................................................AGATCTAAAAACATAATTCTAAATCTA..........................................................................................................................	27	2	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0
..........TTATCGCAGAGCAGAGCACGTT..........................................................................................................................................................................................................................	22	0	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0
.........CTTATCGCAGAGCAGAGCACGTTTAAA......................................................................................................................................................................................................................	27	0	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................CAGCACATCACCTGTGTATCCATTTC...............................................	26	0	1	1.00	1	0	0	0	0	1	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................CCCTTAGACTAGCGTTCACTCACTG........	25	0	1	1.00	1	0	0	0	0	1	0	0	0	0	0	0	0
...............................................................................................................ACATAATTCTAAATCTAAGAAACAAAGGT..............................................................................................................	29	2	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0
....ATTTTCTTATCGCAGAGCAGAGCACGTT..........................................................................................................................................................................................................................	28	0	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0
.............TCGCAGAGCAGAGCACGTTT.........................................................................................................................................................................................................................	20	0	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0
..............................................................TTCAAAATTAAAGAGACATACAGCA...................................................................................................................................................................	25	0	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0
......TTTCTTATCGCAGAGCAGGGCACGTT..........................................................................................................................................................................................................................	26	1	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................TCTATAAGCATGGTTTCAATCAAAGT.........................................................................	26	0	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0
...........................................CTGAATACATTTATAACC.............................................................................................................................................................................................	18	0	1	1.00	1	0	0	0	0	0	0	0	0	0	1	0	0
................................................................................................................................................................ATGGTTTCAATCAAAGTCAGC.....................................................................	21	0	1	1.00	1	0	0	0	0	0	0	0	0	1	0	0	0
........................................................................................................................................................................................................................GCCCTTAGACTAGCGTTCACTCACTGT.......	27	0	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0
...................................................................................AGCAAAGTAAGCACAACAAGATCTAAAA...........................................................................................................................................	28	0	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................TTCTATAAGCATGGTTTCAATCAA............................................................................	24	0	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0
...............................................................................ATACAGCAAAGTAAGCACAACAAGATCT...............................................................................................................................................	28	0	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................TTCAATCAAAGTCAGCACATCCATT............................................................	25	3	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0
.....................................................................................CAAAGTAGGCACAACAAGATCTAAAAAC.........................................................................................................................................	28	1	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	1
...............................................................................................................................AAGAAACAAAGGTAAAAAGTAAAT...................................................................................................	24	0	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0
.......TTCTTATCGCAGAGCAGAGCA..............................................................................................................................................................................................................................	21	0	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................GGTTTCAATCAAAGTCAGCACATCAC..............................................................	26	0	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0
...........AATCGCAGAGCAGAGCACGT...........................................................................................................................................................................................................................	20	1	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0
......................................CACGTCTGAATACATTTATAACCTTT..........................................................................................................................................................................................	26	0	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0
...................................................................................AGCAAAGTAAGCACAACAAGATCT...............................................................................................................................................	24	0	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................AGACTAGCGTTCACTCACTGTACACT..	26	1	1	1.00	1	0	0	0	0	0	1	0	0	0	0	0	0
.......................................................................................................................................................................................................................AGCCCTTAGACTAGCGTTCACTCACTGT.......	28	0	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0
.................................................................................................................................................................................CAGCACATCACCTGTGTATCCATTTCG..............................................	27	0	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0
......TTTCTTATCGCAGAGCAGAGCACGT...........................................................................................................................................................................................................................	25	0	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0
......................AGAGCACGTTTAAAACCACGTCTGAAT.........................................................................................................................................................................................................	27	0	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0
........TCTTATCGCAGAGCAGAGCA..............................................................................................................................................................................................................................	20	0	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................TTCTATAAGCATGGTTTCAATCAAAGT.........................................................................	27	0	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................TGGTTTCAATCAAAGTCAGC.....................................................................	20	0	1	1.00	1	0	0	0	0	0	0	0	0	1	0	0	0
................................................................................................................................................................................TCAGCACATCACCTGTGTATCCATT.................................................	25	0	1	1.00	1	0	0	0	0	0	0	0	1	0	0	0	0
......TTTCTTATCGCAGAGCAGAGC...............................................................................................................................................................................................................................	21	0	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................GAAATCAACGCTAGCCCTTAGA.........................	22	0	1	1.00	1	0	0	0	0	0	0	0	0	0	1	0	0
......ATTCTTATCGCAGAGCAGAGCACGT...........................................................................................................................................................................................................................	25	1	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0
............ATCGCAGAGCAGAGCACGTTT.........................................................................................................................................................................................................................	21	0	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0
................................................................................AACAGCAAAGTAAGCACAACAAGATCT...............................................................................................................................................	27	1	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................GCGTTCACTCACTGTACATT..	20	0	1	1.00	1	0	0	0	0	1	0	0	0	0	0	0	0
....................................................................................GCAAAGTAAGCACAAC......................................................................................................................................................	16	0	1	1.00	1	0	0	0	0	0	1	0	0	0	0	0	0
....................................................................................................................................................................................................CCATTTCGAAATCAACGCTAGCCCT.............................	25	0	1	1.00	1	0	0	0	0	1	0	0	0	0	0	0	0
.................................................................................ACAGCAAAGTAAGCACAACAAGATCTAA.............................................................................................................................................	28	0	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................GGTTGCAATCTAAGACAGCA....................................................................	20	3	2	0.50	1	0	0	0	0	0	1	0	0	0	0	0	0
.....................................................................................................................................CAAGGGTCAAAAGTAAATTGTA...............................................................................................	22	3	3	0.33	1	0	0	0	0	0	0	0	0	0	1	0	0
..........................................................................................................................AATCTGAGGAACAAAGGT..............................................................................................................	18	2	5	0.20	1	0	0	0	0	0	1	0	0	0	0	0	0
................................................................................................................................TGAAACAAAGATAAAAAATAAAT...................................................................................................	23	3	20	0.10	2	0	0	0	0	0	0	2	0	0	0	0	0
............................................................................................................................................................ACGCATGTTTTCAATCAA............................................................................	18	2	10	0.10	1	0	0	0	0	0	0	0	1	0	0	0	0
.........................................................................................................CTAAAAACACAAATCT.................................................................................................................................	16	1	19	0.05	1	0	0	0	0	0	1	0	0	0	0	0	0

Species	Coordinate	ID	Alignment
droSim2	2r:4679718-4679967 +	dsi_12893	CA-TATAAAAG-A------------------ATAGCG-----------TC---T-CG--------TCTCGTGCAAATTTTGGTGCAGACTTAT----------GTAAA----TA----------------------TTGGAAAGTTTTA-ATTT-----CTCTGTATGTCGTTTCATTCGTGTT-G--------------TTCTAGATTTTTGTTT-------TTAGATTTAGAT---------TCTTTGTTTCCATTTT-----TCATTT---A----AGA--TATTCGTACCAAAGT---TAGTTTCAGTCGTGT-AGTGGACA--------CATAGGTAAAGCTTTAG--TTGCGATC--GGGAA-TCTGA----------------------------------TCGCAAGTG--A----GTGA---CATGTAACT
droSec2	scaffold_1:1493510-1493758 +		CA-TATAAAAG-A------------------ATAGCG-----------TC---T-CG--------TCTCGTGCAAATTTTGGTGCAGACTTAT----------GTAAA----TA----------------------TTGGAAAGTTTTA-ATTT-----CTCTGTATGTCGTTTCATTCGTGTT-G--------------TTCTAGA-TTTTGTTT-------TTAGATTTAGAT---------TCTTTGTTTCCATTTT-----TCATTT---A----AGA--TATTCGTACCAAAGT---TAGTTTCAGTCGTGT-AGTGGACA--------CATAGGTAAAGCTTTAC--TTGCGATC--GGGAA-TCTGA----------------------------------TCGCAAGTG--A----GTGA---CATGTAACT
dm3	chr2R:3856204-3856455 +		CA-TATAAAAG-A------------------ATAGCATCTCG------TC---T-CG--------TCTCGTGCAAATTTTGGTGCAGACTTAT----------GTAAA----TA----------------------TTGGAAAGTT-TAAATTT-----CTCTGTATGTCGTTTCATTCGTGTT------------------CTAGATTTTTGTTT-------TTAGATTTAGAT---------ACTTTGTTTCCATTTT-----TCATTT---A----AGA--TATTCGTACCAAAGT---TAGTATCAGTCGTGT-AGTGGACA--------CATAGGTAAAGCTTTAG--TTGCGATC--GGGAA-TCTGA----------------------------------TCGCAAGTG--A----GTGA---CATGTAACT
droEre2	scaffold_4929:18771908-18772151 -		CA-TATAAAAG-A------------------ATAGCG-----------TA---T-CG--------TCTCGTGCAAATTTTGGTGCAGACTTTT----------GTAAA----TA----------------------TTGGAAAGTTCTA-ATTT-----CTCTGTATGTCGTTTCCTTCGAGTT-C--------------TT------TTTTGGTT-------TTAGATTTAGAT---------TCTTTGTTTCCATTTT-----TCATTT---A----AGT--TATTCGTACCAAAGT---TAGTTTCAGTCGTGT-AGTGGACA--------CATAGGTAAAGCTTTAG--TTGCGATC--GGGAA-TCTGC----------------------------------TCGCAAGTG--A----GTGA---CATGTAACT
droYak3	2L:16512492-16512735 +		CA-TATAAAAG-A------------------ATAGTG-----------TT---T-CG--------TCTAGTGCAAATTTTGGTGCAGACTTAT----------GTAAA----TA----------------------TTGGAAAGTTCTA-ATTT-----CTCTTTATGTCGTTTCTTTTGAGTT-G--------------TT------TTTTGTTT-------TAAGATTTAGAT---------TCTTTGTTTCCATTTT-----TCAATT---A----AGA--TATTCGTACCAAAGT---TAGTTTCAGTCGTGT-AGTGGACA--------CATAGGTAAAGCTTTAG--TTGCGATC--GGAAA-TCTGC----------------------------------TCGCAAGTG--A----GTGA---CATGTAACT
droEug1	scf7180000409474:2693223-2693454 +		CT-TATAAAAG-A------------------ATAGCG-----------TC---T-CG--------TTTCGTGCAAATTTTGGTGCAGACTTAT----------GTAAA----TA----------------------TTGGAAAGTACTAAATTT-----CTCTGTATGTCGATTCTTA---------------------------------TTTTT-------TTTGTTCTAGTT---------TCTTTGTTTCCATTTC-----TCATTT---T----AGA--TATTCGTACCAAAGT---TAGTTTCAGTCGTGT-AGTGGACA--------CATAGGTAAAGCTTTAG--TTGCGATCC-GGGAG-TCTGT----------------------------------TCGCAATT--------GTGA---CATGTAACT
droBia1	scf7180000302291:1698033-1698282 +		CT-TATAAAAG-A------------------ATAGCG-----------TC---T-CG--------TCCCGTGCAAATTTTGGTGCAGACTTAT----------GTAAA----TA----------------------TTGGAAAGTACTACATTTTTC--CTCCG---GTCGTTTCTTTCCATTT-T--------------TTC----TTTTTGTTTG------TTTGTTCTAGAT---------TCTTTGTTTCCGTTTT-----TAATTT--TT----AGA--TATTCGTACCAAAGT---TAGTTTCAGTCGTGT-AGTGGACA--------CATAGGTAAAGCTTTAG--TTGCGACCT-GGGAG-TCTGT----------------------------------TCGCAAATG--A----GTGA---CGTGTAACT
droTak1	scf7180000415088:277820-278069 -		CT-TATAAAAG-A------------------ATAGCG-----------TC---T-CG--------TCCCGTGCAAATTTTGGTGCAGACTTAT----------GTAAA----TA----------------------TTGGAAAGTACTAAATTT-----CTCCATATGTCGTTTCTTTCCTGTT-T-----------------------TTT-CTT-------TTTGTCTTAGAT---------TCTTTGTTTCCGTTTT-----TCATTT-TTT----AGA--TATTCGTACCAAAGT---TAGTTTCAGTCGTGT-AGTGGACA--------CATAGGTAAAGCTTTAG--TTGCGATCT-GGGAG-TCTGT----------------------------------TCGCAAATGAGTTTTAGTGA---CATGTAACT
droEle1	scf7180000491258:182509-182751 -		CT-TATAAAAG-A------------------ATAGCTTCACG-------------CG--------TCTCGTGCAAATTTTGGTGCAGACTTATG------TTTGTAAA----TA----------------------TTGGAAAGTACTAAATTT-----CTCTGTATCTCGTTTCATTCTTGTT------------------C---------------------------TACAT--TT-T---TTTTTGTTTCCATTTTCATGTTCATTT---T----AGA--TATTCGTACCAAAGT---TAGTTTCAGTCGTGT-AGTGGACA--------CATAGGTAAAGCTTTAG--TTGCGATCC-GGGAG-TCTGC----------------------------------TCGCAAATG--T----GTGA---CTTGTAACT
droRho1	scf7180000774573:102642-102864 +		CT-TATAAAAG-A------------------ATAGCG-----------TA---TCCG--------TCTCGTGCAAATTTTGGTGCAGACTTAT----------GTAAA----TA----------------------TTGGAAAGTACTAAATTT-----CTCCGTTTGTCTTTTCTTGCTTGTT---------------------------------------------TTAGAT----------TTTTGTTTCC----------TCATT----T----AGA--TATTCGTACCAAAGT---TAGTTTCAGTCGTGT-AGTGGACA--------CATAGGTAAAGCTTTAG--TTGCGATCC-GGGAG-TATGC----------------------------------TCGCAAATG--T----GTGA---CTTGTAACT
droFic1	scf7180000453215:354516-354742 -		CT-TATAAAAG-A------------------ATAGCG-----------TC---TTCG--------TCTCGTGCAAATTTTGGTGCAGACTTAT----------GTAAA----TA----------------------TTGGAAAGTACTAAATTT-----CTCTGTACGTCGATTCATTCTAGTT-T--------------TT------------------------------------------TTTTTGT-TCCATTTT-----TCTTTT---A----AGA--TATTCGTACCAAAGT---TAGTTTCAGTCGTGT-AGTGGACA--------CATAGGTAAAGCTTTAG--TTGCAATCCGGGGCG-TCTGC----------------------------------TCGCAAATG--T----GTGA---CTTGTAACT
droKik1	scf7180000302471:478457-478700 +		CT-TATAAAAG-A------------------ATAGCA-----------TC---T-CCTTTTCCGTTCTCGTGCAAATTTTGGTGCAGACTTATGTATATGTATGTAAA----TA----------------------TTGGAAAGTACTA-ATTT-----CTCTGTCTGTCGTTTCGTT------------------------------TTTTGTTTCTCAGTTTTAGCTTTAGT-----------TTTAGTTTCCCTCGT-----TTTTGT---T----AGA--TATTCGTACCAAAGT---TAGTTTCAGTCGTGT-AGTGGACA--------CATAGGTAAAGCTTTAG--TTGCGACCC--GGCG-TCTGT----------------------------------TCGCAAATG-----------------------
droAna3	scaffold_13266:16180393-16180660 +		A--TATAAAAG-A------------------ATAGCGTCTCTTCGTCTTCGTCTTCG--------TCTCGTGCA-ATTTTGGTGCAGACTTAT----------CTAAA----TA----------------------TTGGAAAGTACTA-AGTT-----CTCTATTTGTCGTTTCATTCAAGTTTT-TTG----------T------TTTTTGTTTCTCCG-------TTTAGAT------AAA-TTTTGTTTCCATTTT-----TTAGATTTTT--AGAGA--TATTCGTACCAAAG-------TTTCAGTCG--T-AGTGGACA--------CATATGTAAAGCTTTAG--TTGCGATCC--GGAATCCCG---------------GA-------------ATGTCTCGCAA-TG--T----CTGA---CTTCTAACT
droBip1	scf7180000396567:660780-661013 +		A--TATAAAAG-A------------------ATAGCGTCTCT-----------T-CG--------TCTCGTGCA-ATTTTGGTGCAGACTTAT----------CTAAA----TA----------------------TTGGAAAGTACTA-AGTT-----CTCTATTTGTCGTTTCCTTCGTGTT-A--CAT---------TTATAGT-TTTTGT-------------ATTTT--------TTAA-TTTTGTTTCCATT------------T---T----AGA--TATTCGTACCAAAG-------TTTCAGTCG--T-AGTGGACA--------CATATGTAAAGCTTTAG--TTGCGATCC--GGAAACCCGC----------------------------------TCGCAA-TG--T----CTGA---CTTCTAACT
dp5	3:5486528-5486794 +		TATTATAAAAG-ATA----GTTCTCTCTTAGATAGCA-----------TCGTC--CG----------TGGTGCAAATTTTGGTGCAGACTTATT----TGTATGTAAA----TA----------------------TTGGAAAGTATTAGATTC-----CTCTGTATGTCGTTTGTT-C-----------------------------TTCTGTTTTTCGG-------------T----------TTTTGTTTC-------------TT-----TTG--ATATTCATTCGTACCAAAGT---TAGTTTCAGTCGTGT-AGTGGACA--------CATAAGTAAAGCTTTAG--TTGCGATCT--GGAG-CCTGTTTTGGGATTCGTTAGA-------------CCGTTTCGCAA-CGTGTT---GTGA---CTCGTAACG
droPer2	scaffold_2:5686066-5686332 +		TATTATAAAAG-ATA----GTTCTCTCTTTGATAGCA-----------TCGTC--CG----------TGGTGCAAATTTTGGTGCAGACTTATT----TGTATGTAAA----TA----------------------TTGGAAAGTATTAGATTC-----CTCTGTATGTCGTTTGTT-C-----------------------------TTCTGTTTTTCGG-------------T----------TTTTGTTTC-------------TT-----TTG--ATATTCATTCGTACCAAAGT---CAGTTTCAGTCGTGT-AGTGGACA--------CATAAGTAAAGCTTTAG--TTGCGATCT--GGAG-CCTGTTTTGGGATTCGTTAGA-------------CCGTTTCGCAA-CGTGTT---GTGA---CTCGTAACG
droWil2	scf2_1100000004382:1024083-1024330 +		CTTTATAAATATATATATATGTATAT-ATTTATAGTGG-TAG------CC---C-CG----------TAGTGCAAATTTTGGTGCAGACTTATA---------GTTAG--GTTA----------------------TCGGAAAGTTCTATATGTATATTCA----ATGTTTTTTTTTTATAGTT-TCTCATCTTTTCTTTTTCTAGG---------------------------T----------TTT-----------------TTTTTT---T--ATA-----GTTCGTACCAAAGATTTGTTTCTCAGTCGTGTAAGTGGACA--------CATATGTAAAGCTTTAAGATTGCTAA------------------------------------------------------GTG--T----GTGTGTGTGTGTGTAT
droVir3	scaffold_12875:16882740-16882990 -		TA-TA-AGTAG-ATT----ATTT----GTTTAGAGCG-----------TC---ATCG----------TCGTGCGAATTTTGGTGCAGACTTATA---------GTTAACAATTT----------------------TTGGAAATTTTTAAAT-T-----GTTTTTT-----------------------------------------------TTT-------TTTGTCT-----TGTTATTAA-TCGTGA-------TT-----TCATTT---A----AGA--TACTCGTACCAAAGT---TAGTCTCAGTCGTGT-AGTGGTCATGTATATGTATATGTAAAGCTTTAG--TTGCGTAC--GCTTG---------------------ACCTTTAGTCGCCTCCGTATCGCAGACGTGT----GTGA---TTTGTAACT
droMoj3	scaffold_6496:11119127-11119360 +		TA-T-TAGTAG-T------------------AGAACG-----------CC---T-------------TCGTGCGGATTTTGGTGCAGACTTATA---------GTTAA----CATAATTCAT--------------TTGGAAATTTCTCAAT-A-----GTTTTTGTTTCCTC-------------------------------------------------------------TTCTTTGAAA-TCGTGT------TTC-----GCATTC---A----AGA--TTCTCGTACCAAAGA---TATTTTCAGTCGTGT-AGTGGTCGTGTATATGTATATGTAAAGCTTTAG--TTGCGTAC--GCTTG-ACCAT--------------------TCGCCATCCTCGTATCGCAGACG--T----G--------TGTGATT
droGri2	scaffold_15245:5677693-5677959 -		TA-TA-AATAG-ATT----ATTC----GATTAGAGCG-----------TC---A-------------TCGTGCAAATTTTGGTGCAGACTTATGG------T--TCAA----TT-----TGTTTGTTTTTTTTTTTAAGGAAATTTCTAAAT-T-----GTCTTTTTGTTTTCT-AATCGTGTT-T--------------TT------TTTT-------------------------------------------TTTTT-----TTGTTT---A----AGA--TACTCGTACCAAAGTGGTGATTCTCAGTCGTGT-AGTGGTCATGTATATGTATATGTAAAGCTTTAG--TTGCGTAC--GCTTG---------------------ACCATTAGCCGTCTCCGTATCGCAGACGTGT----ATGA---TTTATAACT

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droSim2

CA-TATAAAAG-A------------------ATAGCG-----------TC---T-CG--------TCTCGTGCAAATTTTGGTGCAGACTTAT----------GTAAA----TA----------------------TTGGAAAGTTTTA-ATTT-----CTCTGTATGTCGTTTCATTCGTGTT-G--------------TTCTAGATTTTTGTTT-------TTAGATTTAGAT---------TCTTTGTTTCCATTTT-----TCATTT---A----AGA--TATTCGTACCAAAGT---TAGTTTCAGTCGTGT-AGTGGACA--------CATAGGTAAAGCTTTAG--TTGCGATC--GGGAA-TCTGA----------------------------------TCGCAAGTG--A----GTGA---CATGTAACT	Size	Hit Count	Total Norm	Total	M023 Head	M024 Male-body	M025 Embryo	M053 Female-body	O001 Testis	O002 Head	SRR553485 Ovary	SRR553486 Ovary	SRR553487 Ovary	SRR553488 Ovary	SRR618934 Ovary	V044 Embryo	SRR902008 Ovary	SRR902009 Testis	SRR1275487 Male larvae	SRR1275485 Male prepupae	SRR1275483 Male prepupae
......................................................................................................................................................................................................................TT-------TTAGATTTAGAT---------TCTTTGT.............................................................................................................................................................................................	21	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................AGTTTCAGTCGTGT-AGTGGAC...................................................................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................ATGTCGTTTCATTCGTGTT-G--------------T...............................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................T---TAGTTTCAGTCGTGT-AGTGG.....................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................AAAGCTTTAG--TTGCGATC--GGG..........................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................GGAA-TCTGA----------------------------------TCGCAAGTG--A----GT..............	21	1	1.00	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................................................AGTG--A----GTGA---CATGTAACT	18	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.A-TATAAAAG-A------------------ATAGCG-----------TC---T-CG--------.......................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................C--GGGAA-TCTGA----------------------------------TCGCAAGTG--A----................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0

droSec2

CA-TATAAAAG-A------------------ATAGCG-----------TC---T-CG--------TCTCGTGCAAATTTTGGTGCAGACTTAT----------GTAAA----TA----------------------TTGGAAAGTTTTA-ATTT-----CTCTGTATGTCGTTTCATTCGTGTT-G--------------TTCTAGA-TTTTGTTT-------TTAGATTTAGAT---------TCTTTGTTTCCATTTT-----TCATTT---A----AGA--TATTCGTACCAAAGT---TAGTTTCAGTCGTGT-AGTGGACA--------CATAGGTAAAGCTTTAC--TTGCGATC--GGGAA-TCTGA----------------------------------TCGCAAGTG--A----GTGA---CATGTAACT	Size	Hit Count	Total Norm	Total	M054 Female-body	V113 Male-body	V114 Embryo	V115 Head
...............................ATAGCG-----------TC---T-CG--------TCTCGTGC...............................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	1	0
..................................................................................................................................................................................................................................................................................................................TTCAGTCGTGT-AGTGGACA--------CA........................................................................................................	21	1	1.00	1	0	1	0	0

dm3

CA-TATAAAAG-A------------------ATAGCATCTCG------TC---T-CG--------TCTCGTGCAAATTTTGGTGCAGACTTAT----------GTAAA----TA----------------------TTGGAAAGTT-TAAATTT-----CTCTGTATGTCGTTTCATTCGTGTT------------------CTAGATTTTTGTTT-------TTAGATTTAGAT---------ACTTTGTTTCCATTTT-----TCATTT---A----AGA--TATTCGTACCAAAGT---TAGTATCAGTCGTGT-AGTGGACA--------CATAGGTAAAGCTTTAG--TTGCGATC--GGGAA-TCTGA----------------------------------TCGCAAGTG--A----GTGA---CATGTAACT	Size	Hit Count	Total Norm	Total	GSM154618 Ovary	GSM154620 Ovary	GSM154621 Ovary	GSM154622 Ovary	GSM180328 Head	GSM180329 Mixed-body	GSM180330 Embryo	GSM180331 Embryo	GSM180332 Embryo	GSM180333 Embryo	GSM180334 Larvae	GSM180335 Disc	GSM180336 Pupae	GSM180337 S2	GSM231091 Ovary	GSM239041 Head	GSM239050 Head	GSM239051 S2	GSM239052 S2	GSM246084 Head	GSM266765 S2	GSM280082 Ovary	GSM280083 Ovary	GSM280084 Ovary	GSM280085 Testis	GSM280086 Ovary	GSM280087 S2-NP	GSM280088 S2-NP	GSM312995 Head	GSM313160 Head	GSM313161 Head	GSM313162 Head	GSM313163 Head	GSM313164 Head	GSM313165 Head	GSM343287 Embryo	GSM379050 Ovary	GSM379051 Ovary	GSM379052 Ovary	GSM379053 Ovary	GSM379054 Ovary	GSM379055 Ovary	GSM379056 Ovary	GSM379057 Ovary	GSM379058 Ovary	GSM379059 Ovary	GSM379060 Ovary	GSM379061 Ovary	GSM379062 Ovary	GSM379063 Ovary	GSM379064 Ovary	GSM379065 Ovary	GSM379066 Ovary	GSM379067 Ovary	GSM424739 S2	GSM424740 S2	GSM424741 S2	GSM467729 Female-body	GSM467730 Female-body	GSM467731 Female-body	M002 CS	M003 Male-body	M004 Male-body	M005 ML-DmD32	M006 ML-DmD32	M029 OSC	M030 OSC	M031 OSC	M032 S2-R+	M033 S2-R+	M034 S2-R+	M035 S2-R+	M036 S2-R+	M037 S2-R+	M038 S2-R+	M039 S2-R+	M048 S2-R+	OSS2 OSS	OSS6 OSS	OSS7 OSS	OSS8 OSS	S1 Head	S10 Embryo	S11 Embryo	S12 Embryo	S13 Embryo	S14 Embryo	S15 S2-GMR	S16 Kc	S17 Larvae	S18 Larvae	S19 Pupae	S2 Head	S20 Pupae	S21 Disc	S22 Head	S23 Female-body	S24 Male-body	S25 Larvae	S26 Larvae	S27 Pupae	S28 Pupae	S29 Head	S3 Male-body	S30 S2-GMR	S31 S2	S32 S2	S33 Kc	S34 Kc	S35 Kc	S4 Female-body	S5 Disc	S6 Embryo	S7 Embryo	S8 S2	S9 Embryo	SRR001337 Head	SRR001338 Head	SRR001339 Head	SRR001340 Head	SRR001341 Head	SRR001342 Head	SRR001343 Head	SRR001344 Head	SRR001345 Head	SRR001346 Head	SRR001347 Head	SRR001348 Head	SRR001349 Head	SRR001664 Head	SRR010951 Ovary	SRR010952 Ovary	SRR010953 Ovary	SRR010954 Ovary	SRR010955 Ovary	SRR010956 Ovary	SRR010957 Ovary	SRR010958 Ovary	SRR010959 Ovary	SRR010960 Ovary	SRR014268 Embryo	SRR014269 Embryo	SRR014270 Embryo	SRR014271 Embryo	SRR014272 Embryo	SRR014273 Ovary	SRR014274 Ovary	SRR014275 Ovary	SRR014276 Ovary	SRR014277 Ovary	SRR014278 Ovary	SRR014279 Ovary	SRR014280 Ovary	SRR014281 Ovary	SRR014282 Ovary	SRR023197 S2	SRR023399 S2	SRR023400 S2	SRR023402 S2	SRR023407 S2	SRR029028 S2	SRR029029 S2	SRR029030 S2	SRR029031 S2	SRR029032 S2	SRR029033 S2	SRR029608 Head	SRR029633 Head	SRR030145 gb3	SRR031692 Head	SRR031693 Head	SRR031694 Head	SRR031696 Head	SRR031697 Head	SRR031698 Head	SRR031699 Head	SRR031700 Head	SRR031701 Head	SRR031702 Head	SRR031703 Head	SRR031704 Head	SRR032092 S2	SRR032093 S2	SRR032094 S2	SRR032095 S2-NP	SRR032096 S2-NP	SRR032152 Head	SRR060643 Testis	SRR060644 Ovary	SRR060645 Testis	SRR060646 Ovary	SRR060647 Ovary	SRR060648 Ovary	SRR060649 Ovary	SRR060650 Testis	SRR060651 Ovary	SRR060652 Testis	SRR060653 Ovary	SRR065151 Ovary	SRR065152 Ovary	SRR065153 Ovary	SRR065154 Ovary	SRR065155 Ovary	SRR065800 Ovary	SRR065801 Ovary	SRR065802 Ovary	SRR065803 Ovary	SRR065804 Ovary	SRR065805 Ovary	SRR065806 Ovary	SRR065807 Ovary	SRR097865 S2-NP	SRR097866 S2-NP	SRR097867 S2-NP	SRR298536 Ovary	SRR298537 Ovary	SRR298711 Ovary	SRR298712 Ovary	SRR317110 Ovary	SRR317111 Ovary	SRR317112 Ovary	SRR317113 Ovary	SRR317114 Ovary	SRR317115 Ovary	SRR317116 Ovary	SRR317117 Ovary	SRR341115 S2	SRR341116 S2	SRR341117 S2	SRR341118 S2	SRR351332 Mixed-body	SRR351333 Mixed-body	T004 OSC	T005 CME-L1	V001 Embryo	V002 Embryo	V003 S2	V006 Female-body	V007 Head	V008 S2	V009 CME-L1	V010 ML-DmD20-C5	V011 Sg4	V012 Male-body	V013 Head	V014 DTT	V015 DreRFHV	V018 Kc167	V019 GM2	V020 S2-R+	V021 ML-DmD21	V022 ML-DmD32	V023 Head	V024 Kc167	V025 S2-R+	V026 1182-2H	V027 ML-DmD21	V028 CME-W1-Cl.8+	V029 ML-DmD9	V030 ML-DmD8	V031 GM2	V032 S1	V033 CME-W1-Cl.8+	V034 ML-DmD16-C3	V035 ML-DmD32	V036 ML-DmD20-C5	V037 S2	V038 S2	V063 Ovary	V0632 Ovary	V064 Ovary	V0642 Ovary	V065 Ovary	V0652 Ovary	V066 Ovary	V0662 Ovary	V067 S2-NP	V073 mbn2	V074 S3	V075 ML-DmBG1-C1	V076 ML-DmBG3-C2	V077 Head	V078 Head	V079 Head	V080 Head	V081 Embryo	V082 Embryo	V083 Male-body	V084 Female-body	V085 CME-W2	V086 Female-body	V088 Ovary	V0882 Ovary	V089 Ovary	V0892 Ovary	V090 Male-body	V091 fGS/OSS	V092 Male-body	V093 Male-body	V094 S2-R+	V095 S2-R+	V096 Ovary	V097 Ovary	V098 Ovary	V125 ML-DmD9	V126 CME-L1	V127 G2	V128 S3	V129 ML-DmBG1-C1	V130 ML-DmBG3-C2	V131 ML-DmD16-C3	V132 ML-DmD32	V133 Sg4	V134 ML-DmD8	V135 CME-W2	V136 Male-body	V137 Head	V138 Male-body	V139 Female-body	V140 Female-body	V141 Female-body	V142 Female-body	V144 OSC	V145 S2	V146 S1	V147 1182-2H	V148 mbn2	GSM1528798 follicle cells
...............................................................................................................................................................................................................................................................................................................................GTGGACA--------CATAGGTAAAGCTT............................................................................................	21	1	8.00	8	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	2	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	0
............A------------------ATAGCATCTCG------TC---T-CG--------TCT....................................................................................................................................................................................................................................................................................................................................................................................	20	1	8.00	8	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	6	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................CAAATTTTGGTGCAGACTTAT----------.................................................................................................................................................................................................................................................................................................................................................	21	1	7.00	7	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	3	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............A------------------ATAGCATCTCG------TC---T-CG--------TC.....................................................................................................................................................................................................................................................................................................................................................................................	19	1	6.00	6	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	6	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................C--GGGAA-TCTGA----------------------------------TCGCAAGTG--A----................	21	1	6.00	6	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	6	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................TTGCGATC--GGGAA-TCTGA----------------------------------TCG.............................	21	1	5.00	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................TCTGA----------------------------------TCGCAAGTG--A----GTGA---CA.......	21	1	5.00	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................TAG--TTGCGATC--GGGAA-TCTGA----------------------------------................................	21	1	5.00	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
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...............................................................................................................................................................................................................TTTTTGTTT-------TTAGATTTAGAT---------....................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................ATAGGTAAAGCTTTAG--TTGCG..................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................TCAGTCGTGT-AGTGGACA--------CAT.......................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................TCTGA----------------------------------TCGCAAGTG--A----GTGA---CAT......	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................ATAGCATCTCG------TC---T-CG--------TCTCGT.................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................TCG------TC---T-CG--------TCTCGTGCAAATTTTGGT.....................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................ATC--GGGAA-TCTGA----------------------------------TCGCAAGTG--A----GTGA---.........	27	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0

droEre2

CA-TATAAAAG-A------------------ATAGCG-----------TA---T-CG--------TCTCGTGCAAATTTTGGTGCAGACTTTT----------GTAAA----TA----------------------TTGGAAAGTTCTA-ATTT-----CTCTGTATGTCGTTTCCTTCGAGTT-C--------------TT------TTTTGGTT-------TTAGATTTAGAT---------TCTTTGTTTCCATTTT-----TCATTT---A----AGT--TATTCGTACCAAAGT---TAGTTTCAGTCGTGT-AGTGGACA--------CATAGGTAAAGCTTTAG--TTGCGATC--GGGAA-TCTGC----------------------------------TCGCAAGTG--A----GTGA---CATGTAACT	Size	Hit Count	Total Norm	Total	M055 Female-body	M057 Embryo	V060 Head	V040 Embryo	V107 Male-body	V108 Head	GSM1528801 follicle cells
..........................................................................................................................................................................................................................................................................................................T---TAGTTTCAGTCGTGT-AGTGG.....................................................................................................................	21	1	1.00	1	0	0	0	0	0	1	0

droYak3

CA-TATAAAAG-A------------------ATAGTG-----------TT---T-CG--------TCTAGTGCAAATTTTGGTGCAGACTTAT----------GTAAA----TA----------------------TTGGAAAGTTCTA-ATTT-----CTCTTTATGTCGTTTCTTTTGAGTT-G--------------TT------TTTTGTTT-------TAAGATTTAGAT---------TCTTTGTTTCCATTTT-----TCAATT---A----AGA--TATTCGTACCAAAGT---TAGTTTCAGTCGTGT-AGTGGACA--------CATAGGTAAAGCTTTAG--TTGCGATC--GGAAA-TCTGC----------------------------------TCGCAAGTG--A----GTGA---CATGTAACT	Size	Hit Count	Total Norm	Total	M026 Head	M043 Female-body	M056 Embryo	V046 Embryo	V052 Head	V058 Head	V120 Male-body	SRR1275488 Male larvae	SRR1275486 Male prepupae	SRR1275484 Male prepupae	GSM1528802 follicle cells
........................................................................................................................................................TT-----CTCTTTATGTCGTTTCTTTTGAGT.................................................................................................................................................................................................................................................................	26	1	16.00	16	0	0	0	0	0	0	0	0	0	0	16
........................................................................................................................................................TT-----CTCTTTATGTCGTTTCTTT......................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................AGTGGACA--------CATAGGTAAAGCTTTAG--T......................................................................................	26	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0

droEug1

CT-TATAAAAG-A------------------ATAGCG-----------TC---T-CG--------TTTCGTGCAAATTTTGGTGCAGACTTAT----------GTAAA----TA----------------------TTGGAAAGTACTAAATTT-----CTCTGTATGTCGATTCTTA---------------------------------TTTTT-------TTTGTTCTAGTT---------TCTTTGTTTCCATTTC-----TCATTT---T----AGA--TATTCGTACCAAAGT---TAGTTTCAGTCGTGT-AGTGGACA--------CATAGGTAAAGCTTTAG--TTGCGATCC-GGGAG-TCTGT----------------------------------TCGCAATT--------GTGA---CATGTAACT	Size	Hit Count	Total Norm	Total
No Reads

droBia1

CT-TATAAAAG-A------------------ATAGCG-----------TC---T-CG--------TCCCGTGCAAATTTTGGTGCAGACTTAT----------GTAAA----TA----------------------TTGGAAAGTACTACATTTTTC--CTCCG---GTCGTTTCTTTCCATTT-T--------------TTC----TTTTTGTTTG------TTTGTTCTAGAT---------TCTTTGTTTCCGTTTT-----TAATTT--TT----AGA--TATTCGTACCAAAGT---TAGTTTCAGTCGTGT-AGTGGACA--------CATAGGTAAAGCTTTAG--TTGCGACCT-GGGAG-TCTGT----------------------------------TCGCAAATG--A----GTGA---CGTGTAACT	Size	Hit Count	Total Norm	Total
No Reads

droTak1

CT-TATAAAAG-A------------------ATAGCG-----------TC---T-CG--------TCCCGTGCAAATTTTGGTGCAGACTTAT----------GTAAA----TA----------------------TTGGAAAGTACTAAATTT-----CTCCATATGTCGTTTCTTTCCTGTT-T-----------------------TTT-CTT-------TTTGTCTTAGAT---------TCTTTGTTTCCGTTTT-----TCATTT-TTT----AGA--TATTCGTACCAAAGT---TAGTTTCAGTCGTGT-AGTGGACA--------CATAGGTAAAGCTTTAG--TTGCGATCT-GGGAG-TCTGT----------------------------------TCGCAAATGAGTTTTAGTGA---CATGTAACT	Size	Hit Count	Total Norm	Total
No Reads

droEle1

CT-TATAAAAG-A------------------ATAGCTTCACG-------------CG--------TCTCGTGCAAATTTTGGTGCAGACTTATG------TTTGTAAA----TA----------------------TTGGAAAGTACTAAATTT-----CTCTGTATCTCGTTTCATTCTTGTT------------------C---------------------------TACAT--TT-T---TTTTTGTTTCCATTTTCATGTTCATTT---T----AGA--TATTCGTACCAAAGT---TAGTTTCAGTCGTGT-AGTGGACA--------CATAGGTAAAGCTTTAG--TTGCGATCC-GGGAG-TCTGC----------------------------------TCGCAAATG--T----GTGA---CTTGTAACT	Size	Hit Count	Total Norm	Total
No Reads

droRho1

CT-TATAAAAG-A------------------ATAGCG-----------TA---TCCG--------TCTCGTGCAAATTTTGGTGCAGACTTAT----------GTAAA----TA----------------------TTGGAAAGTACTAAATTT-----CTCCGTTTGTCTTTTCTTGCTTGTT---------------------------------------------TTAGAT----------TTTTGTTTCC----------TCATT----T----AGA--TATTCGTACCAAAGT---TAGTTTCAGTCGTGT-AGTGGACA--------CATAGGTAAAGCTTTAG--TTGCGATCC-GGGAG-TATGC----------------------------------TCGCAAATG--T----GTGA---CTTGTAACT	Size	Hit Count	Total Norm	Total
No Reads

droFic1

CT-TATAAAAG-A------------------ATAGCG-----------TC---TTCG--------TCTCGTGCAAATTTTGGTGCAGACTTAT----------GTAAA----TA----------------------TTGGAAAGTACTAAATTT-----CTCTGTACGTCGATTCATTCTAGTT-T--------------TT------------------------------------------TTTTTGT-TCCATTTT-----TCTTTT---A----AGA--TATTCGTACCAAAGT---TAGTTTCAGTCGTGT-AGTGGACA--------CATAGGTAAAGCTTTAG--TTGCAATCCGGGGCG-TCTGC----------------------------------TCGCAAATG--T----GTGA---CTTGTAACT	Size	Hit Count	Total Norm	Total
No Reads

droKik1

CT-TATAAAAG-A------------------ATAGCA-----------TC---T-CCTTTTCCGTTCTCGTGCAAATTTTGGTGCAGACTTATGTATATGTATGTAAA----TA----------------------TTGGAAAGTACTA-ATTT-----CTCTGTCTGTCGTTTCGTT------------------------------TTTTGTTTCTCAGTTTTAGCTTTAGT-----------TTTAGTTTCCCTCGT-----TTTTGT---T----AGA--TATTCGTACCAAAGT---TAGTTTCAGTCGTGT-AGTGGACA--------CATAGGTAAAGCTTTAG--TTGCGACCC--GGCG-TCTGT----------------------------------TCGCAAATG-----------------------	Size	Hit Count	Total Norm	Total
No Reads

droAna3

A--TATAAAAG-A------------------ATAGCGTCTCTTCGTCTTCGTCTTCG--------TCTCGTGCA-ATTTTGGTGCAGACTTAT----------CTAAA----TA----------------------TTGGAAAGTACTA-AGTT-----CTCTATTTGTCGTTTCATTCAAGTTTT-TTG----------T------TTTTTGTTTCTCCG-------TTTAGAT------AAA-TTTTGTTTCCATTTT-----TTAGATTTTT--AGAGA--TATTCGTACCAAAG-------TTTCAGTCG--T-AGTGGACA--------CATATGTAAAGCTTTAG--TTGCGATCC--GGAATCCCG---------------GA-------------ATGTCTCGCAA-TG--T----CTGA---CTTCTAACT	Size	Hit Count	Total Norm	Total	M044 Female-body	M058 Embryo	V039 Embryo	V055 Head	V105 Male-body	V106 Head
................................TAGCGTCTCTTCGTCTTCGTC...................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	1	0	0	0	0	0

droBip1

A--TATAAAAG-A------------------ATAGCGTCTCT-----------T-CG--------TCTCGTGCA-ATTTTGGTGCAGACTTAT----------CTAAA----TA----------------------TTGGAAAGTACTA-AGTT-----CTCTATTTGTCGTTTCCTTCGTGTT-A--CAT---------TTATAGT-TTTTGT-------------ATTTT--------TTAA-TTTTGTTTCCATT------------T---T----AGA--TATTCGTACCAAAG-------TTTCAGTCG--T-AGTGGACA--------CATATGTAAAGCTTTAG--TTGCGATCC--GGAAACCCGC----------------------------------TCGCAA-TG--T----CTGA---CTTCTAACT	Size	Hit Count	Total Norm	Total
No Reads

dp5

TATTATAAAAG-ATA----GTTCTCTCTTAGATAGCA-----------TCGTC--CG----------TGGTGCAAATTTTGGTGCAGACTTATT----TGTATGTAAA----TA----------------------TTGGAAAGTATTAGATTC-----CTCTGTATGTCGTTTGTT-C-----------------------------TTCTGTTTTTCGG-------------T----------TTTTGTTTC-------------TT-----TTG--ATATTCATTCGTACCAAAGT---TAGTTTCAGTCGTGT-AGTGGACA--------CATAAGTAAAGCTTTAG--TTGCGATCT--GGAG-CCTGTTTTGGGATTCGTTAGA-------------CCGTTTCGCAA-CGTGTT---GTGA---CTCGTAACG	Size	Hit Count	Total Norm	Total	M022 Male-body	M040 Female-body	M059 Embryo	M062 Head	V043 Embryo	V051 Head	V112 Male-body	SRR902010 Ovary	SRR902011 Testis	SRR902012 CNS imaginal disc
.........................................................................................................................................................................................................................................................................................................................................................CTTTAG--TTGCGATCT--GGAG-CC.....................................................................	21	1	3.00	3	1	2	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................ATCT--GGAG-CCTGTTTTGGGAT..........................................................	21	1	2.00	2	0	2	0	0	0	0	0	0	0	0
............................................................................TTTTGGTGCAGACTTATT----TGT...................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...........................TTAGATAGCA-----------TCGTC--CG----------TGG..................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................TTTTGGGATTCGTTAGA-------------CC...................................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...................GTTCTCTCTTAGATAGCA-----------TCG.....................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................TTTAG--TTGCGATCT--GGAG-CCT....................................................................	21	1	1.00	1	0	0	0	0	0	0	1	0	0	0
.......................................................................................................................................................................................................................................................................................ATATTCATTCGTACCAAAGT---C.........................................................................................................................................	21	1	1.00	1	0	0	0	1	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................GGATTCGTTAGA-------------CCGTTTCGC............................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................................................TTCGCAA-CGTGTT---GTGA---CTCGT....	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..........................CTTAGATAGCA-----------TCGTC--CG----------TGG..................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...........................................................................................................................................................................TTTGTT-C-----------------------------TTCTGTTTTTCGG-------------T----------...................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................TGTTTC-------------TT-----TTG--ATATTCATTCG......................................................................................................................................................	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.......................................................................................................................................................TTC-----CTCTGTATGTCGTTTGTT-......................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	1	0	0	0
..........................................................................................................................................................................................................................................................................................................................TGT-AGTGGACA--------CATAAGTAAAGCTT............................................................................................	25	1	1.00	1	0	1	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................CAGTCGTGT-AGTGGACA--------CAT.......................................................................................................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0
............................TAGATAGCA-----------TCGTC--CG----------TGGTG................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.........AG-ATA----GTTCTCTCTTAGATAGC....................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	1
............................................................................................................................................................................................................................................................................................................................................................................................ATTCGTTAGA-------------CCGTTTCGCA...........................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................TGTTTTTCGG-------------T----------TTTTGTTTC-------------T............................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.....................TCTCTCTTAGATAGCA-----------TCGTC--.................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................TTCAGTCGTGT-AGTGGACA--------C.........................................................................................................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................CAGTCGTGT-AGTGGACA--------CA........................................................................................................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................TTCAGTCGTGT-AGTGGACA--------CA........................................................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0

droPer2

TATTATAAAAG-ATA----GTTCTCTCTTTGATAGCA-----------TCGTC--CG----------TGGTGCAAATTTTGGTGCAGACTTATT----TGTATGTAAA----TA----------------------TTGGAAAGTATTAGATTC-----CTCTGTATGTCGTTTGTT-C-----------------------------TTCTGTTTTTCGG-------------T----------TTTTGTTTC-------------TT-----TTG--ATATTCATTCGTACCAAAGT---CAGTTTCAGTCGTGT-AGTGGACA--------CATAAGTAAAGCTTTAG--TTGCGATCT--GGAG-CCTGTTTTGGGATTCGTTAGA-------------CCGTTTCGCAA-CGTGTT---GTGA---CTCGTAACG	Size	Hit Count	Total Norm	Total	M021 Embryo	M042 Female-body	V042 Embryo	V050 Head	V057 Head	V111 Male-body
.....................................................................................................................................................................................................................................................................................................CAAAGT---CAGTTTCAGTCGTG............................................................................................................................	20	1	1.00	1	0	1	0	0	0	0
....................................................................................................................................................AGATTC-----CTCTGTATGTCGTT...........................................................................................................................................................................................................................................................................	20	1	1.00	1	0	1	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................TTAG--TTGCGATCT--GGAG-CCTGTT.................................................................	23	1	1.00	1	0	1	0	0	0	0

droWil2

CTTTATAAATATATATATATGTATAT-ATTTATAGTGG-TAG------CC---C-CG----------TAGTGCAAATTTTGGTGCAGACTTATA---------GTTAG--GTTA----------------------TCGGAAAGTTCTATATGTATATTCA----ATGTTTTTTTTTTATAGTT-TCTCATCTTTTCTTTTTCTAGG---------------------------T----------TTT-----------------TTTTTT---T--ATA-----GTTCGTACCAAAGATTTGTTTCTCAGTCGTGTAAGTGGACA--------CATATGTAAAGCTTTAAGATTGCTAA------------------------------------------------------GTG--T----GTGTGTGTGTGTGTAT	Size	Hit Count	Total Norm	Total	M020 Head	M045 Female-body	V117 Male-body	V118 Embryo	V119 Head
..............................................................................................................................................................................................................................................................................................................................................................AGATTGCTAA------------------------------------------------------GTG--T----GTGTGTG.........	21	1	1.00	1	0	0	0	1	0
..............................TATAGTGG-TAG------CC---C-CG----------TAGTG................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0
................................................................................................................................................................................................................................................................................................................TTCTCAGTCGTGTAAGTGGAC...................................................................................................................	21	1	1.00	1	1	0	0	0	0
...........................................................................................................................................................................................................................................................................TTTT---T--ATA-----GTTCGTACCAAAG..............................................................................................................................................	21	1	1.00	1	0	1	0	0	0

droVir3

TA-TA-AGTAG-ATT----ATTT----GTTTAGAGCG-----------TC---ATCG----------TCGTGCGAATTTTGGTGCAGACTTATA---------GTTAACAATTT----------------------TTGGAAATTTTTAAAT-T-----GTTTTTT-----------------------------------------------TTT-------TTTGTCT-----TGTTATTAA-TCGTGA-------TT-----TCATTT---A----AGA--TACTCGTACCAAAGT---TAGTCTCAGTCGTGT-AGTGGTCATGTATATGTATATGTAAAGCTTTAG--TTGCGTAC--GCTTG---------------------ACCTTTAGTCGCCTCCGTATCGCAGACGTGT----GTGA---TTTGTAACT	Size	Hit Count	Total Norm	Total	M027 Male-body	M028 Head	M047 Female-body	M061 Embryo	SRR060654 Ovary	SRR060655 Testis	SRR060656 Ovary	SRR060657 Testis	SRR060658 Ovary	SRR060659 Testis	SRR060660 Ovary	SRR060661 Embryo	SRR060662 Embryo	SRR060663 Embryo	SRR060664 Male-body	SRR060665 Female-body	SRR060666 Male-body	SRR060667 Female-body	SRR060668 Male-body	SRR060669 Female-body	SRR060670 Testis	SRR060671 Male-body	SRR060672 Female-body	SRR060673 Ovary	SRR060674 Ovary	SRR060675 Ovary	SRR060676 Ovary	SRR060677 Ovary	SRR060678 Testis	SRR060679 Testis	SRR060680 Testis	SRR060681 Testis	SRR060682 Embryo	SRR060683 Testis	SRR060684 Embryo	SRR060685 Embryo	SRR060686 Embryo	SRR060687 Embryo	SRR060688 Ovary	SRR060689 Testis	SRR1106712 embryo_0-2h	SRR1106713 embryo_0-2h	SRR1106714 embryo_2-4h	SRR1106715 embryo_4-6h	SRR1106716 embryo_4-6h	SRR1106717 embryo_6-8h	SRR1106718 embryo_6-8h	SRR1106719 embryo_8-10h	SRR1106720 embryo_8-10h	SRR1106721 embryo_10-12h	SRR1106722 embryo_10-12h	SRR1106723 embryo_12-14h	SRR1106724 embryo_12-14h	SRR1106725 embryo_14-16h	SRR1106726 embryo_14-16h	SRR1106727 larvae	SRR1106728 larvae	SRR1106729 mixed whole adult body	SRR1106730 embryo_16-30h	V047 Embryo	V053 Head	V116 Male-body	GSM1528803 follicle cells
......................................................................................................................................................................................................................................................................................................AAAGT---TAGTCTCAGTCGTGT-A.........................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droMoj3

TA-T-TAGTAG-T------------------AGAACG-----------CC---T-------------TCGTGCGGATTTTGGTGCAGACTTATA---------GTTAA----CATAATTCAT--------------TTGGAAATTTCTCAAT-A-----GTTTTTGTTTCCTC-------------------------------------------------------------TTCTTTGAAA-TCGTGT------TTC-----GCATTC---A----AGA--TTCTCGTACCAAAGA---TATTTTCAGTCGTGT-AGTGGTCGTGTATATGTATATGTAAAGCTTTAG--TTGCGTAC--GCTTG-ACCAT--------------------TCGCCATCCTCGTATCGCAGACG--T----G--------TGTGATT	Size	Hit Count	Total Norm	Total	M046 Female-body	V041 Embryo	V049 Head	V056 Head	M060 Embryo	V110 Male-body
.................................................................................................................................................................................................................................................................................................................................................................TTGCGTAC--GCTTG-ACCAT--------------------TCGCCATCC.....................................	27	1	1.00	1	1	0	0	0	0	0

droGri2

TA-TA-AATAG-ATT----ATTC----GATTAGAGCG-----------TC---A-------------TCGTGCAAATTTTGGTGCAGACTTATGG------T--TCAA----TT-----TGTTTGTTTTTTTTTTTAAGGAAATTTCTAAAT-T-----GTCTTTTTGTTTTCT-AATCGTGTT-T--------------TT------TTTT-------------------------------------------TTTTT-----TTGTTT---A----AGA--TACTCGTACCAAAGTGGTGATTCTCAGTCGTGT-AGTGGTCATGTATATGTATATGTAAAGCTTTAG--TTGCGTAC--GCTTG---------------------ACCATTAGCCGTCTCCGTATCGCAGACGTGT----ATGA---TTTATAACT	Size	Hit Count	Total Norm	Total	M041 Female-body	V109 Male-body
No Reads

dsi_12893

2r:4679768-4679917 +

Candidate

Unknown

Predicted structure

Flybase annnotation

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads

-4.7	-4.5	-4.2