ID:

dsi_12884

 Coordinate:

2r:12318498-12318767 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-41.9 -41.7 -41.7

Flybase annnotation

intergenic

No Repeatable elements found

Sense Strand Reads

GGACCCGGAGTGCGCATCCCACTGTGCAACAGCTGCAATGTGCAGATCAGGTGAAGAGAGCATCCCAGAGTTTGTTGTGTTCAAAGTTTAATTCTAATGTTATGGTTGTTATTTATTTGTGCCCTTGAATGGTTCTAATCCGCTTCCCAACACCTTGAGATTGATCTTTGATATGCCAGTTATATATCTTCTGTTATTATATTATATTTTGGGATCAGCTTCCTACTGATAAGCTTGATACCCGCCAGCCCTACTAATTGCCTGCCACCAATCTAACCCATTCGCTTTTTTGTGTTCTGTTTACCCCCATTCTGTTACAGTTCCCACAGGAGCTCAAAGCGCTGCCAAGTCCACTAATCTGCATGCTAGT
**************************************************(((((.(((((((...(((((.....((((((((((.((((((.(((((((..((..((...(((.....(((.......)))..)))...))..)).))))..))).)))))).)))))).))))(((...........))).................(((((((((((.........)))).)))).)))((..((..........))..))..................)))))...))))))).)))))................************************************************** 		Read size # Mismatch Hit Count Total Norm Total M025
embryo
 GSM343915
embryo
 SRR902009
testis
 SRR553486
Makindu_3 day-old ovaries
 SRR618934
dsim w501 ovaries
 SRR553487
NRT_0-2 hours eggs
..............................................................................................................................................................................................................................CTACTGATAAGCTTGATACCC............................................................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0
.....................CGGTGCAACAGCTGCAATGTGCA...................................................................................................................................................................................................................................................................................................................................... 23 1 1 1.00 1 0 1 0 0 0 0
..................................GCAATGTGCAGATCAGAGGAC........................................................................................................................................................................................................................................................................................................................... 21 3 3 0.33 1 0 0 1 0 0 0
.............................................................................................................................................................................................................ATTTTGGGATGAGCT...................................................................................................................................................... 15 1 15 0.07 1 0 0 0 0 1 0
......................TGTCGAACAGCTGCAATGGG........................................................................................................................................................................................................................................................................................................................................ 20 3 16 0.06 1 0 0 0 1 0 0
............................................................................................................................................................CAGACTGGTCTTTGATATG................................................................................................................................................................................................... 19 3 20 0.05 1 0 0 0 1 0 0
.................................................................CAGAGCTCGTTGTGTT................................................................................................................................................................................................................................................................................................. 16 2 20 0.05 1 0 0 0 0 0 1
........................................................................................................................GCCCTGGATTGGTTCT.......................................................................................................................................................................................................................................... 16 2 20 0.05 1 0 0 0 1 0 0
.......................................................................................................................................................................................................TATTATATTTTGGGG............................................................................................................................................................ 15 1 20 0.05 1 0 0 0 1 0 0

Anti-sense strand reads

CCTGGGCCTCACGCGTAGGGTGACACGTTGTCGACGTTACACGTCTAGTCCACTTCTCTCGTAGGGTCTCAAACAACACAAGTTTCAAATTAAGATTACAATACCAACAATAAATAAACACGGGAACTTACCAAGATTAGGCGAAGGGTTGTGGAACTCTAACTAGAAACTATACGGTCAATATATAGAAGACAATAATATAATATAAAACCCTAGTCGAAGGATGACTATTCGAACTATGGGCGGTCGGGATGATTAACGGACGGTGGTTAGATTGGGTAAGCGAAAAAACACAAGACAAATGGGGGTAAGACAATGTCAAGGGTGTCCTCGAGTTTCGCGACGGTTCAGGTGATTAGACGTACGATCA
**************************************************(((((.(((((((...(((((.....((((((((((.((((((.(((((((..((..((...(((.....(((.......)))..)))...))..)).))))..))).)))))).)))))).))))(((...........))).................(((((((((((.........)))).)))).)))((..((..........))..))..................)))))...))))))).)))))................************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR902008
ovaries
 SRR553487
NRT_0-2 hours eggs
 SRR618934
dsim w501 ovaries
 M023
head
 SRR553486
Makindu_3 day-old ovaries
 SRR553488
RT_0-2 hours eggs
..................................................................................................................................................................................................................................................GCGGTCGGGATATTTAACAGA........................................................................................................... 21 3 1 2.00 2 2 0 0 0 0 0
...........................................................................................................................................................................ATAATGTCAGTATATAGAAGA.................................................................................................................................................................................. 21 3 1 1.00 1 1 0 0 0 0 0
........................................................................................................................................................................................................................................................GGGCTGAATAACGGACGCTGGT.................................................................................................... 22 3 2 0.50 1 0 1 0 0 0 0
....................................................................................................................................................................................................................CTAGTCTAAGGGTGACTA............................................................................................................................................ 18 2 4 0.25 1 0 0 0 1 0 0
..................................................................................................................................................................................................................................................GCGGTCGGGATATTTAAC.............................................................................................................. 18 2 5 0.20 1 0 0 0 0 1 0
...................................................................................................................................................................................................................................................CGGTCGGGTTGCTTAACG............................................................................................................. 18 2 6 0.17 1 0 0 0 1 0 0
....................................................................................................................................................................................................................................................................................GGGTAAGCGAAAAACCAT............................................................................ 18 2 8 0.13 1 0 0 1 0 0 0
.....................................................................................................................................................................................................................TAGTCGAGAGATGACTA............................................................................................................................................ 17 2 9 0.11 1 0 0 1 0 0 0
........................................................................................................................CGGGAACTGACCAAG........................................................................................................................................................................................................................................... 15 1 10 0.10 1 0 0 1 0 0 0
............................................................................................................................................................................TAATGTCAGTATATAGAAGA.................................................................................................................................................................................. 20 3 10 0.10 1 1 0 0 0 0 0
.....................................................................................................................................................................................................................................................................GACGGTGGTTAGCTT.............................................................................................. 15 1 20 0.05 1 0 0 1 0 0 0
........................................................................................................................................................................................................................................................................................................................................................GGCTCAGGTAATGAGACGT....... 19 3 20 0.05 1 0 0 0 0 0 1
....................................................................................................................................................................................................................................................................CGAAGGTGGTTAGATT.............................................................................................. 16 2 20 0.05 1 0 0 1 0 0 0
......................................................................................................................................................................................................................................................TCGGGATGATAAGCGG............................................................................................................ 16 2 20 0.05 1 0 0 0 0 1 0
.....................................................................................................................................................................................................................................................................................................................................................GCCGGTTCAGGAGATTAGT.......... 19 3 20 0.05 1 0 0 0 0 0 1

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim2 2r:12318448-12318817 - dsi_12884 GGACCCGGAGTGCGCATCCCACTGTGCAACAGCTGCAATGTGCAGATCAGGTGAAGAG-------------------AGCATCC--C------------------AG--AGTT-TGTTGTG-------TTCAAAGTTTAAT---------------TCTAATGTTA-------TGGTTGT-----------------------------------------------------------------------------------------------------------------------------------------------------------------TATTTATTTGTGCCCTTGAATGGTTCTAATCCGCT--------T-CCCAAC-------------------------------------------ACCTTGAGATTGATCTTTGAT-----ATGCCA--GT-------------TATA-T------------ATCTTCTG--------T-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TATTATA-------------------------------------------------TTA-TATTTTGGGATCAGCTTCCTACTGATAAGCTTGATACCCGCCAG---------------------------------------------------------------------------------------------------CCCTACTAATT----GCCT-GCCACC---AATCTAACC-CAT------TCGCTTTTTTGTG-TTC-TGTT-TACCCC-CA---TTCT---GTTACAGTTCCC------ACAGGAGCTCAAAGCGCTGCCAAGTCCACTAATCTGCATGCTAGT
droSec2 scaffold_1:9145848-9146261 - GGACCCGGAGTGCGCATCCCACTGTGCAACAGCTGCAATGTGCAGATCAGGTGAACAG-------------------AGCATCC--T------------------AG--AGTT-TGTTGTG-------TTCAAAGTTTGAT---------------TCTAATGTTAACTGTAATGGTTGT-----------------------------------------------------------------------------------------------------------------------------------------------------------------TATTTATTTGCGCCCGTTGATGATTCTAATCTGCT--------T-CCCAAA-------------------------------------------ACCTTTAGATTGATCTTTGAT-----ATGCCACAGT-------------TATA-T------------ATCTTAAG--------TTTATTA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TATATATTATAT----------------ATATATTATATATTATATATTATA-------------------------------------------------ATA-TATTTTGGGATCAGCTTCCTACTGATAAGCTTGATACCCGCCAG---------------------------------------------------------------------------------------------------CCGTACTAATT----GCCT-GCCACC---AATCTAACA-TAT------ACGCTTTTTTGTG-TTC-TGTT-TACCCC-CA---TTTT---GTTACAGTTCCC------ACAGGAGCTCAAAGTGCTACCAAGTCCACTAATCTGCATGCTAGT
dm3 chr2R:11652291-11652677 - GGACCCGGAGTGCGCATCCCACTGTGCAACAGCTGCAATGTGCAGATCAGGTGAACAG-------------------AGCATCC--C------------------AG--AGTT-TGTTGTG-------TTTAAAGTTTGAT---------------TCATATGTTAACTATGATGGTTGT-----------------------------------------------------------------------------------------------------------------------------------------------------------------TATTTATTTTTGCCCTTGAATGATTCTAATCCGCT--------T-CCCAAC-------------------------------------------ACCTTGAGATTGATCTTTGAT-----ATGCCATAGA-------------TCACATATCTTAT----GATCTTATG--------T-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TATTATA-------------------------------------------------ATA-TAATTTGGGATCAGCTTCCTACTGATAAGCTTGATACCAGCCAG---------------------------------------------------------------------------------------------------CCCTACTAATT----GCCT-GCCACC---AATCTAACA-TTT------ACGCT-TTTTGTG-TTC-TGTT-TACCCC-CA---TTTT---GTTACAGTGCCC------ACAGGAGCTCAAAGCGCTGCCAAATCCACTAATCTGCATGCTAGT
droEre2 scaffold_4845:14210078-14210437 + GGACCCGGAGTGCGCATCCCACTGTGCAACAGCTGCAATGTGCAGATCAGGTGAACAG-------------------AGCATCC--C------------------AG--AGTTTTGTTGTG-------TTCAAAGTTTGAT---------------TCTTGTG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGTGCCCTTGAATGATTCTAATCCGCT--------T-CCGAAT-------------------------------------------ACCCTGAGATTGATCTTTTATTTTCTCTGCCATAGT-------------TAAC-T------------TACCTATG--------T-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TATAAT-------------------------------------------------GTTA-TATTTTGGGATCAGCTTCCTACTGATAAGTTCGATACCAACCAG---------------------------------------------------------------------------------------------------TCCCACTAATT---TGCCT-GCCACC---AATCTAACC-CAT------TCGCTATTCTGTG-TTC-TGTT-TACC-C-CA---ATTT---GTTGCAGTTTCC------ACAGGAGCTCAAAGCGCTGCCAAGTCCACTAATACGCATGCTAGT
droYak3 2R:17334712-17335097 + GGACCCGGAGTGCGCATCCCACTGTGCAACAGCTGCAATGTGCAGATCAGGTGAACAG-------------------AGCATCC--C------------------CG--AGTTTTGTTGTG-------TTCAAAGTTTGAT---------------TCTATTGTTAACTAAGATTGCTGT-----------------------------------------------------------------------------------------------------------------------------------------------------------------TATTTATTTGTGCCCTTGAATGAATCTAATCCGCT--------T-CTGAAC-------------------------------------------ACCTTGAGATTGATCTTTGATTTTCTCTGCCATATT-------------GATC-T------------TTCCTAAG--------T-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TATAATA-------------------------------------------------TTA-TATTTTGGGATCAGCTTCCTACTGATAAGCTTGATACCACCCAG---------------------------------------------------------------------------------------------------TCATACTAATT---CGCCT-GCCACC---AATCTAACC-CAT------TCGCTATTCTGTG-TTC-TGTT-TACCCC-CA---TTTT---GTTGCAGTTCCC------ACAGGAGCTCAAAGCGCTGCCAAGTCCACTAATCCGCATGCTAGT
droEug1 scf7180000409672:551076-551457 - GGACCCGGAGTGCGCATCCCATTGTGCAACAGCTGCAACGTGCAGATCAGGTGAACAG-------------------AGCATCC--C------------------AG--AGTT-TGTTGTG-------TTCCAAGTTTGAT---------------TTTGGTGTTCAATCTGTTTGTTGTG------------T---------------------------------------------------------------------------------------------------------------------------------------------------------TTTGAGGCTTTAAATGATCTTAGTTCGT-----------CCTATT-------------------------------------------ATC-------------------------------------------------------TGAT--CT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTCTAACGTTATTTAGTTAATC---GTAATGTT-ACTTAGTA------TAAGAGTTATCTTTTTGGGATCAGCTTCCTACTGAAAAGCTTGATCCCATTCAA------------------------------------------------------------------------------------G-AAA---------TCCCAACTAATT---TGCCTGGCCACC---AATCTAACC-CGC------TAGCT-TTTTGTGTTTT-TGTT-TCCCCC-CG---TTTT---GTTCCAGTTCCC------ACAGGAGCTTCCAGCGCTGTCAAGGCCACTAATCCGCATGCTAAT
droBia1 scf7180000302292:4006073-4006454 + GGACCTGGAGTGCGCATCCCACTGTGCAACAGCTGCAACGTGCAGATCAGGTGAACAG-------------------AGCAACC--C------------------AG--TGTT-TGTTGTG-------TTCCAAGTTCGAT---------------------GTTGACC-AGATTGTTGTG------------TTTTGAATGATATTAACCCAT------------------------------------------------------------------------------------------------------------------------------------------------------------------GATTTGTTTACCCAA------------------------------AAGGAGTTTGGATTTTCTTTAGAT----------------------------------------TA-ATATCTGAT--CC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTTC------------------CTGTTATGTT-ATTTATTC------TAAGAGTTA-CTTGTTGGGATCAGCTTCCTACTGAAGAGCTTGATCCCTGAT-----------------------------------------------------------------------------------------------------ACCAAATAATT----GCCTTGCCACT---AATCTAACC-CGC------TCGCT-TTCTGTG-TTC-TGTT-TACCCC-CG---TTTTTCAGTTCCAGTTCCT------CCAGGAGCTTCCATCGCCGCCAAGGTCACTAATCCGCATGCTAAT
droTak1 scf7180000415241:27307-27635 + GCTCCCGGAGTGCGCGTTCCATTGTGCAACAGCTGCAACGTGCAGATCAGGTGAACAG-------------------AGCATCC--C------------------AG--AGTTTCGTTGTG-------TTGCAAGTTTGAT---------------T--------------GATTGTTGCG------------TTTTATATGATCTTAAGCCAT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAC------CTC------------------------------------------------------------------------------------------------------------------------------------------------------------------TTAATTTCTGTTACGTATTTTTATTC------TAATCGTTA-T-TTTTGGGATCAGATTTCTAAGGAAGTTCTTGATCCCTACC-----------------------------------------------------------------------------------------------------CAATACTAATT---TGCCT-GCCACT---AATCTAACC-CGC------TCGCT-TTCTGTG-TTC-TGTT-TTCCCC-CG---TTTT---GTTGCAGTTTCC------TCAGGAGTTACCAGCGCCGCCAAGGTGACTAATCCGCATGCTAAA
droEle1 scf7180000491107:631773-632264 - GGACCAGGAGTCCGCATCCCATTGTGCAACAGCTGCAACGTGCAGATCAGGTGAACAG-------------------AGCATCC--C------------------AGTTGGTT-TGTTGTT-GTGGCCTTCCGAGTTTGAA---------------T--------------------TGTGTTTATTTTGTGGCTG-----------------------------------------AGATAGATACTAATCCAGAATGTCAATAGATGGTTTTGATATCTTTTGATTTATGTTTAATCCAACGAAGAACTTATGGATATCTGACTTTGTCTTTTGATTTGTGTTTGTTTGTGGCATTGAAAGTTACTAATCC---------------------------------------------AAAGAGGAATTAGGTATATCTACAGAC--------------------------TTTTGTGATGATTTTG-ATATCTGAC-------------------------------------------------------------------------------------------------------------TAAGTG---------TTAC------CTC-----------------------------------------------------------------------------------------------------------------------------------------------------T-------------------------------------------------GTTA-TTTTTTGTGATCAGCTTCCTACTGAAGAGCTCGATCCCAGCCTGA-------------------------------------------------------------------------------------------------TTCCCACTAATT----ACCT-GCAACT---AATCTAACC-CGC------TCGCT-TTTTGTG-TTT-TGTT-T-CCTC-CG---TTTT---GTTGCAGTTCCC------ACAGGAGTTGCCACCGCTGCCAAGGTCACTAATCCGCATGCTAAT
droRho1 scf7180000779911:460115-460577 + GGACCCGGAGTGCGCATCCCACTGTGCAACAGCTGCAACGTGCAGATCAGGTGAACAG-------------------AGCATCC--C------------------CG--AGTT-CGTTGTTG----GTTTCCGAGTTTGAT---------------T--------------------TGT------------------------------------------------------------------------------------------------------------------------------------------------------------------GTTTATTTGTGGCTTCGAAAGATACTAATTC---------------------------------------------AAAGAGGA--------TATCCTGAGAT--------------------------TTTTGTGACCATATTG-ATATCTGAC-------------------------------------------------------------------------------------------------------------T--TTTAATGACCTTTTCC------CTC------------------------------------------------------------------------------------------------------------------------------------------------------------------TT---TT-----TTGTT-ACTTATTT------TAAGAGTTG-TTTTTTGGGATCAGCTTCCTACTGAAGAGCTTGATCCCAGCCCGATACCCA--------TTAATTTGACTTACTTATTTTAAGAGTTATTTTTTGGGATCAACTTCCTACT---GAA----------TTGATCCCAGCACGATTCCCACTAATT---TGCCT-GCAACC---AATCTAACC-CGC------TCGCT-TTTTGTG-TTT-TGTT-TAC-CC-CG---TTTT---TTTGCAGTTCCC------AAGGGAGCTACCACCGCTGTCAAAGCCACTAATCCGCATGCTAAT
droFic1 scf7180000453809:146597-146969 - GGACCCGGAGTGCGCATCCCCTTGTGCAACAGCTGCAACGTGCAGATCAGGTGAACACG----------------AGAGCATCC--C------------------GG--AGTTCTGTTGTG-------TTTTCAGTTTGTG---------------ATTGAAGTTCT-------G-----------------------AATG-------------TA-------------------------------------------------------------------------------------------------------------------------------TTACTTTTACCCCTGAGTGAAACTAATCA---------------------------------------------AAAAAGAAGT--------------GTC----------------------------------------AA-ACACCTGACTT--GT-TC----CCATTTTAT-------------------------CCA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTAATCTATGTTATGTTCAATAATTCTAGTTTTAAGAGTTAATTTGTTTTGTTTAGCTTTCCTCTGAA--------------------------------------------------------------------------------------------------------------------CCCTTACTAATT---TACCT-GCCAGT-A-AACCTAACCTCGC------TCGCT-TTTCAT-------GTT-TAC-CC-CG---ATTT---GTTGCAGTACCC------GCAGGATTGAATACCGCTGCCAAGGCCACTAATCCGCATGCTAAT
droKik1 scf7180000302682:1826814-1827245 - GGACCCGGTGTGCGTATCCCACTATGCAACAGCTGCAACGTGCAGATCAGGTGAACAAG------------------AGCATCC--C------------------AG--CGTT-C----------------AATATTTGATGTTTTTTGATATTT-C--------------------TGTGTTTAATTTGTTGTTG-----------------------------------------------------------------------------------------------------------------------------------------------------------------GGAATGATTCTTAACCCTTG---------AAAAACAATCTTTAAGAGATTTTTAAGGGTTCCAAGAGGTAT-------CCCTTGGGAT--ATC------------------------------------------CTTA-------CTTTAAG--------TTAATTATTGTTTATATTT----A--CCAATTAACCAAGGCATTT-TT--------------------------------------------TG---------T---------------------------------------------------------------------------------------------------------------------------------------------------TATATCTTTTATTTTA-----------------------------ATTAACTT------TAAGTGTTC--TTTTTGGGATCAGCTTCCTACTGAAAAGCTTGATCTCACCCAGA-------------------------------------------------------------------------------------------------TCCTCACTAATT---CGCAT-GATTTT-A-AACCTAACC-CAATGCCGCCTGTT-T-----------TGT----------------------TTGCAGTTCCC------ACAGGAGCTCCTGCCGCTGTCAAGGCCACTAATCCGCATGCTAAT
droAna3 scaffold_13266:12547620-12547983 + GCACCCGGAGTGCGCATCCCACTGTGCAACAGTTGCAACGTCCAGATCAGGTGAAGTTA---AAGAT----------------------GGTTGTTGCATGTTCCAG--TGTT-TGATTTT-TTGGCCT--TGAGTTTGAT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTTTC-----------------------------------------------------------------------TTTAGAT----------------------------------------TCTACA--TGAA-------C------ATTTATGTTTACTT------------TATAA--TCC----------A--TTA-TTTAA--CATAT-AATTACTTTCAGCTTTTAAGT-ATCTGAATAACCC---------AAAT------CTTTGTGAA-TTGCTG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGAATCGGCTCCCTTCTGATGGGCCCAATTCCAGCCAG---------------------------------------------------------------------------------------------------C---TCTAATT---CGCAT-GCTCTGTACACGCTAACC-CGC------TTGTT-TTTTGTC-TTGCT-CTGTGGC--------CTTT---GTTGCAGTTCCT------CCAGCA---------GCTGCGAACTCCACTAATCTGCAT------
droBip1 scf7180000396372:47600-47939 + GCACCCGGAGTGCGCATCCCACTGTGCAACAGCTGCAACGTGCAGATCAGGTGAAGTTA---ATGAT----------------------GGATGTTGCATGTTCCAG--TGTT-CGATGTT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTGGCCTCTTATGTTTCTAAGAGGC----------------------------------------------------------------------------------------------------------------------------------------AATTATGT-------------------------TCC----------A--TTTTTTTAA--CTAATTTATTACTATTCG-TTTTAAGT-ATTCTAATAACCC---------AAAA------ATTGGTTTATTTACCA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGGATTGGCTCCCTACTGATGAGCGCAATCCCCGCCAG---------------------------------------------------------------------------------------------------C---TCTAATT---TGCAT-GCTCCATACACGCTAACC-CGC------TTGTT-TTTTGTT-TTTCT-CTGTGGC--------CTTT---GTTGCAGTGCCT------CCAGCA---------GCTGCTAACACCACTAATCTGCAT------
dp5 3:19532928-19533276 + GCACCGGGAGTGCGCATCCCTCTGTGCAATAGCTGCAACGTGCAGATCAGGTGAAGAGC------------------GGCATCC--C------------------C---ACCT-CGTTGTG-------TTCTCTGTTC-----------------TGTTGATGTTCT-------C-----------------------CATG-------------TTCTTTAA---------------------------------------------------------------------------------------------------------------------------------------GAGTGATTCTAACCCGCTGT---------T------------------------------------------------------------------------------------------------------------------------------------------------------A--------------------------------------------------TATCTAAGT-ATCA--------G---------ATAGAGCCCT-------------CCG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGGATCAGCTTCCTAGTGATCAGCT-GATGTCAGGCGGGTTCTCTGATGCCCTTT---------------------------------------GTTTTTGTTTTTATTAACTAAGTTTTAAG-TGTTT-------CGCCAACTAATT---TGCAT-GCCTGT---GACCTAACG-CGC------TCGCC---CTGTG-TTC-TGTC-T----C-CG----TTC---GTTGCAG------------------------CCGCCGTCAAGCAAACTAATTCGCATGCAAAC
droPer2 scaffold_37:535218-535567 + GCACCGGGAGTGCGCATCCCTCTGTGCAATAGCTGCAACGTGCAGATCAGGTGAAGAGC------------------AGCATCC--C------------------C---ACCT-CGTTGTG-------TTCTCTGTTC-----------------TGTTGATGTTCT-------C-----------------------CATG-------------TTCTTTAA---------------------------------------------------------------------------------------------------------------------------------------GAGTGATTCTAACCCGCTGT---------T------------------------------------------------------------------------------------------------------------------------------------------------------A--------------------------------------------------TATCTAAGT-ATCA--------G---------ATAGAGCCCT-------------CCG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGGATCAGCTTCCTAGTGATCAGCT-GATGTCAGGCGGGTTCTCTGATGCCCTTT---------------------------------------GTTTTTGTTTTTATTAACTAAGATTTAAG-TGTTT-------CGCCAACTAATT---TGCAT-GCCTGT---GACTTAACG-CGC------TCGCC---CTGTG-TTC-TGT-----CTC-CG---TTTC---GTTGCAGC------------------------CGCCGTCAAGCAAACTAATTCGCATGCAAAC
droWil2 scf2_1100000004512:936534-936785 + GGACCCGGAGTGCGTATCCCCTTGTGTAATAGCTGCAATGTGCAGATCAGGTGAAGAAATAAA----------AGAGAGTTTGC--C------------------CG---------TTGTT----------------------------------AGTTGTTGTTCT-------T-----------------------TATG-----------------------------------------------------------------------------------------------------------------------------------------------------------------ATTGTTATC-------------------------------------------------------------------------------------------------------------------------------------CTA-GT--------------------------TA------------------------------------------------------TAAGA-GTTCTTAACCCCC---------AAGGACCTCATTGGGTCTATTT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCTGCAT---------------------------------------GTTTTTGTTC----------------------------------CGAACTAA-------------------CCCTTAAACC-CGT------TTGCC-TT--GCG-TTT----C-TA-TTC-CA---TGTT---GTTGCAGTT------------------------GCGCCTAAGCCCACTAACCCACAAG-----
droVir3 scaffold_12823:1414322-1414629 + GGACCGGGGGTGCGCATCCCGCTGTGCAACAGCTGCAATGTGCAGATCAGGTGAACAGTTCCC----AACAATACGAAGTTTCTC-C------------------AG--TTTA-TGTTGTTC----GTTC------TCGTT---------------CTCGCAG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTCGCATGTTT---------------------------------------------------------------------------------------------------------------------------------------GC-CC----CAATTATCT-------------------------CCA----------G--TTTAATTAAATCTAATTTA-----------ATCTAAGCTTATCTAATAAC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTATTAATTCTGCGCAT-GTTTC--AAGCTCTAACC-CCCTAAAACTTGTT-TGTTGTT-TTT-CGTTCTCGTTTTCGTTTCATT---GTTGCAGCG------------ATCCCTTCGCTAGCCTCCAAGCCCAATAACACGCATGCTTAT
droMoj3 scaffold_6496:485974-486443 - GGACCAGGCGTTCGCATCCCACTGTGCAACAGCTGCAATGTGCAGATCAGGTGAAGAA-------------------GAATTCC--CCATGCTGTTTCA------AG--TTCT-CGTTGTT-------GTTTTTGTTT-----------------TG-----------------------------------------TTTGATTTCTATTCATGTTATTTTACTATCTGGAGTCCCAGGTGAATTCCAGGCTCCAATTGTTACG------------------------------------------------------------------------------------TATACTTCTAATTCCCCCCAAGCC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACAGCTGACCTGAGACTT-----GCTTCTCTGACTGTTTAGAGAGCAAGTCCTGCATGATTGCTAACCACTTACCTCGATTATATATACGGCTTGGCTGGCGAAGCTCTGATTAATCTCAGATTGTCTTTGCCA--------------------------------------------------------------------------------------ATGCCATTTAG------------------------------------------------------------------------------GTCTAAG-TCTCC-------A----GCTAATTCATTGCAC-GAACTGTAAACCCTAACC-AAT-----TTCGTT-TGTTGTT-TTT-CGTTATCGTTC-CA---TT-----ATT-CCCTTGCC------GCAGGGCCTCCTCCGCTTGCTCAGCCAATTAACTCGCATGCTAAT
droGri2 scaffold_15245:5831977-5832383 - GCACCCGGTGTCCGCATCCCATTGTGCAACAGCTGCAATGTGCAGATCAGGTGATAAATTGAA-----TCAATCTGAAGTTCCCCCT------------------AC--ACCT-TGTTGTT-------GTTTATATTTGCT---------------GTTGTTGTTGATTAAC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTA-GC--------------------------GATAAGTTGC----------A--TTG-TTGAA--CAAAG---TTACTTGCAG-----------TTCTTAAAACAC---------ATAAAGCTCT-------------CTGGTCAACAGCTCGCTTGTGTCTTCGAGCGATTTACAAACTGTACAGTTTGACAGGCTTTCTTGATTGA------------------------------------------------------------------------------------------------------------------------------------------------------------AATCTACA---------------------------------------------------------------------------------------AT-AATC---------CAGCACTAATTCCACGCAT-GTTTT--ACGCTCTAACC-CGCTAACAATTGTT-TGTTGTT-TTC--GTTTTCGTTT-CG---TTCT---GTTACAGCTCCCTCCTCCTCGTCCGCCCCCACTCTTGCCAAGCCCAATAACATGCATGCTAAC

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
GGACCCGGAGTGCGCATCCCACTGTGCAACAGCTGCAATGTGCAGATCAGGTGAAGAG-------------------AGCATCC--C------------------AG--AGTT-TGTTGTG-------TTCAAAGTTTAAT---------------TCTAATGTTA-------TGGTTGT-----------------------------------------------------------------------------------------------------------------------------------------------------------------TATTTATTTGTGCCCTTGAATGGTTCTAATCCGCT--------T-CCCAAC-------------------------------------------ACCTTGAGATTGATCTTTGAT-----ATGCCA--GT-------------TATA-T------------ATCTTCTG--------T-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TATTATA-------------------------------------------------TTA-TATTTTGGGATCAGCTTCCTACTGATAAGCTTGATACCCGCCAG---------------------------------------------------------------------------------------------------CCCTACTAATT----GCCT-GCCACC---AATCTAACC-CAT------TCGCTTTTTTGTG-TTC-TGTT-TACCCC-CA---TTCT---GTTACAGTTCCC------ACAGGAGCTCAAAGCGCTGCCAAGTCCACTAATCTGCATGCTAGTSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTACTGATAAGCTTGATACCC.................................................................................................................................................................................................................................................................2111.00100100000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TA-------------------------------------------------TTA-TATTTTGGGG..............................................................................................................................................................................................................................................................................................15200.05100000001000000000
droSec2
GGACCCGGAGTGCGCATCCCACTGTGCAACAGCTGCAATGTGCAGATCAGGTGAACAG-------------------AGCATCC--T------------------AG--AGTT-TGTTGTG-------TTCAAAGTTTGAT---------------TCTAATGTTAACTGTAATGGTTGT-----------------------------------------------------------------------------------------------------------------------------------------------------------------TATTTATTTGCGCCCGTTGATGATTCTAATCTGCT--------T-CCCAAA-------------------------------------------ACCTTTAGATTGATCTTTGAT-----ATGCCACAGT-------------TATA-T------------ATCTTAAG--------TTTATTA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TATATATTATAT----------------ATATATTATATATTATATATTATA-------------------------------------------------ATA-TATTTTGGGATCAGCTTCCTACTGATAAGCTTGATACCCGCCAG---------------------------------------------------------------------------------------------------CCGTACTAATT----GCCT-GCCACC---AATCTAACA-TAT------ACGCTTTTTTGTG-TTC-TGTT-TACCCC-CA---TTTT---GTTACAGTTCCC------ACAGGAGCTCAAAGTGCTACCAAGTCCACTAATCTGCATGCTAGTSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
.GACCCGGAGTGCGCATCCCA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010100
................................................................................ATCC--T------------------AG--AGTT-TGTTGTG-------TTC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010100
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAAGTGCTACCAAGTCCA.................1911.0010010
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCC------ACAGGAGCTCAAAGTGCT...........................2211.0010100
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCCC------ACAGGAGCTCAAAGT..............................2111.0010010
dm3
GGACCCGGAGTGCGCATCCCACTGTGCAACAGCTGCAATGTGCAGATCAGGTGAACAG-------------------AGCATCC--C------------------AG--AGTT-TGTTGTG-------TTTAAAGTTTGAT---------------TCATATGTTAACTATGATGGTTGT-----------------------------------------------------------------------------------------------------------------------------------------------------------------TATTTATTTTTGCCCTTGAATGATTCTAATCCGCT--------T-CCCAAC-------------------------------------------ACCTTGAGATTGATCTTTGAT-----ATGCCATAGA-------------TCACATATCTTAT----GATCTTATG--------T-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TATTATA-------------------------------------------------ATA-TAATTTGGGATCAGCTTCCTACTGATAAGCTTGATACCAGCCAG---------------------------------------------------------------------------------------------------CCCTACTAATT----GCCT-GCCACC---AATCTAACA-TTT------ACGCT-TTTTGTG-TTC-TGTT-TACCCC-CA---TTTT---GTTACAGTGCCC------ACAGGAGCTCAAAGCGCTGCCAAATCCACTAATCTGCATGCTAGTSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
..........................................CAGATCAGGTGAACAG-------------------AGCA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2017.0070000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000070000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................CACTGTGCAACAGCTGCAATGT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2213.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
GGACCCGGAGTGCGCATCC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1913.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............GCATCCCACTGTGCAACA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1812.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................AGCTGCAATGTGCAGATCA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1912.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......GAGTGCGCATCCCACTGTGCAACA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2412.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................AACAG-------------------AGCATCC--C------------------AG--AGTT-TG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2112.0020000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000
............................ACAGCTGCAATGTGCAGATCAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2212.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................AAAGTTTGAT---------------TCATATGTTG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................C------ACAGGAGCTCAAAGCGCTGCC........................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
.GACCCGGAGTGCGCATCCC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................CACTGTGCAACAGCTGCAATGTGC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....CGGAGTGCGCATCCCACTGTGCA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................AGCTGCAATGTGCAGATC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....CCGGAGTGCGCATCCCACTGTGCAACA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000
................TCCCACTGTGCAACAGCTGCAA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................TGCAACAGCTGCAATGTGCAGATCAGT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
....................ACTGTGCAACAGCTGCAATGT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................GAACAG-------------------AGCATCC--C------------------AG--AGT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTGCCC------ACAGGAGCTCAAAGCGCTGCC........................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....CGGAGTGCGCATCCCACTG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................CTGTGCAACAGCTGCAATGTGCAGATC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................TGCAGATCAGGTGAACAG-------------------.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................CGCT--------T-CCCAAC-------------------------------------------ACCTTGA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
GGACCCGGAGTGCGCATC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGAGCTCAAAGCGCTGCCA.......................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................TCCCACTGTGCAACAGCTGCA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTGCCC------ACAGGAGCTCAA.................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......GGAGTGCGCATCCCACTGTGC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........GTGCGCATCCCACTGTGCAACAGCTGC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................CCCACTGTGCAACAGCTGC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................CGCT--------T-CCCAAC-------------------------------------------ACCTTGAGAT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................GCTGCAATGTGCAGATCAGAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................ACAGCTGCAATGTGCAGATC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........TGCGCATCCCACTGTGCAACA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................GCTGCAATGTGCAGATCA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................TTTTGCCCTTGAATGATTCTA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..ACCCGGAGTGCGCATCCC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................ACTGTGCAACAGCTGCAATGTGCAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCACTAATCTGCATGCTA..1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T---GTTACAGTGCCC------ACAGG........................................1811.0010000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGCT-TTTTGTG-TTC-TGTT-TAC...............................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000
............................................GATCAGGTGAACAG-------------------AGCATC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000
..................................GCAATGTGCAGATCAGAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1840.2510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droEre2
GGACCCGGAGTGCGCATCCCACTGTGCAACAGCTGCAATGTGCAGATCAGGTGAACAG-------------------AGCATCC--C------------------AG--AGTTTTGTTGTG-------TTCAAAGTTTGAT---------------TCTTGTG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGTGCCCTTGAATGATTCTAATCCGCT--------T-CCGAAT-------------------------------------------ACCCTGAGATTGATCTTTTATTTTCTCTGCCATAGT-------------TAAC-T------------TACCTATG--------T-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TATAAT-------------------------------------------------GTTA-TATTTTGGGATCAGCTTCCTACTGATAAGTTCGATACCAACCAG---------------------------------------------------------------------------------------------------TCCCACTAATT---TGCCT-GCCACC---AATCTAACC-CAT------TCGCTATTCTGTG-TTC-TGTT-TACC-C-CA---ATTT---GTTGCAGTTTCC------ACAGGAGCTCAAAGCGCTGCCAAGTCCACTAATACGCATGCTAGTSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGGAGCTCAAAGCGCTGCCAAGTCCACT...............2911.0011000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTCC------ACAGGAGCTCAAAGCGCTGCCAA......................2811.0011000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGCGCTGCCAAGTCCACT...............1911.0010001000
................TCCCACTGTGCAACAGCTGCAA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0011000000
droYak3
GGACCCGGAGTGCGCATCCCACTGTGCAACAGCTGCAATGTGCAGATCAGGTGAACAG-------------------AGCATCC--C------------------CG--AGTTTTGTTGTG-------TTCAAAGTTTGAT---------------TCTATTGTTAACTAAGATTGCTGT-----------------------------------------------------------------------------------------------------------------------------------------------------------------TATTTATTTGTGCCCTTGAATGAATCTAATCCGCT--------T-CTGAAC-------------------------------------------ACCTTGAGATTGATCTTTGATTTTCTCTGCCATATT-------------GATC-T------------TTCCTAAG--------T-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TATAATA-------------------------------------------------TTA-TATTTTGGGATCAGCTTCCTACTGATAAGCTTGATACCACCCAG---------------------------------------------------------------------------------------------------TCATACTAATT---CGCCT-GCCACC---AATCTAACC-CAT------TCGCTATTCTGTG-TTC-TGTT-TACCCC-CA---TTTT---GTTGCAGTTCCC------ACAGGAGCTCAAAGCGCTGCCAAGTCCACTAATCCGCATGCTAGTSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
............CGCATCCCACTGTGCAACAGCTGC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.00101000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCACCCAG---------------------------------------------------------------------------------------------------TCATACTAATT---CGCCT-G....................................................................................................................................2511.00110000000000
.GACCCGGAGTGCGCATCCCA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00100000010000
......GGAGTGCGCATCCCACTGTGCAACA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.00101000000000
.....CGGAGTGCGCATCCCACTGTGC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.00101000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCAAAGCGCTGCCAAGTCCACT...............2311.00100000010000
droEug1
GGACCCGGAGTGCGCATCCCATTGTGCAACAGCTGCAACGTGCAGATCAGGTGAACAG-------------------AGCATCC--C------------------AG--AGTT-TGTTGTG-------TTCCAAGTTTGAT---------------TTTGGTGTTCAATCTGTTTGTTGTG------------T---------------------------------------------------------------------------------------------------------------------------------------------------------TTTGAGGCTTTAAATGATCTTAGTTCGT-----------CCTATT-------------------------------------------ATC-------------------------------------------------------TGAT--CT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTCTAACGTTATTTAGTTAATC---GTAATGTT-ACTTAGTA------TAAGAGTTATCTTTTTGGGATCAGCTTCCTACTGAAAAGCTTGATCCCATTCAA------------------------------------------------------------------------------------G-AAA---------TCCCAACTAATT---TGCCTGGCCACC---AATCTAACC-CGC------TAGCT-TTTTGTGTTTT-TGTT-TCCCCC-CG---TTTT---GTTCCAGTTCCC------ACAGGAGCTTCCAGCGCTGTCAAGGCCACTAATCCGCATGCTAATSizeHit CountTotal NormTotal
No Reads
droBia1
GGACCTGGAGTGCGCATCCCACTGTGCAACAGCTGCAACGTGCAGATCAGGTGAACAG-------------------AGCAACC--C------------------AG--TGTT-TGTTGTG-------TTCCAAGTTCGAT---------------------GTTGACC-AGATTGTTGTG------------TTTTGAATGATATTAACCCAT------------------------------------------------------------------------------------------------------------------------------------------------------------------GATTTGTTTACCCAA------------------------------AAGGAGTTTGGATTTTCTTTAGAT----------------------------------------TA-ATATCTGAT--CC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTTC------------------CTGTTATGTT-ATTTATTC------TAAGAGTTA-CTTGTTGGGATCAGCTTCCTACTGAAGAGCTTGATCCCTGAT-----------------------------------------------------------------------------------------------------ACCAAATAATT----GCCTTGCCACT---AATCTAACC-CGC------TCGCT-TTCTGTG-TTC-TGTT-TACCCC-CG---TTTTTCAGTTCCAGTTCCT------CCAGGAGCTTCCATCGCCGCCAAGGTCACTAATCCGCATGCTAATSizeHit CountTotal NormTotal
No Reads
droTak1
GCTCCCGGAGTGCGCGTTCCATTGTGCAACAGCTGCAACGTGCAGATCAGGTGAACAG-------------------AGCATCC--C------------------AG--AGTTTCGTTGTG-------TTGCAAGTTTGAT---------------T--------------GATTGTTGCG------------TTTTATATGATCTTAAGCCAT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAC------CTC------------------------------------------------------------------------------------------------------------------------------------------------------------------TTAATTTCTGTTACGTATTTTTATTC------TAATCGTTA-T-TTTTGGGATCAGATTTCTAAGGAAGTTCTTGATCCCTACC-----------------------------------------------------------------------------------------------------CAATACTAATT---TGCCT-GCCACT---AATCTAACC-CGC------TCGCT-TTCTGTG-TTC-TGTT-TTCCCC-CG---TTTT---GTTGCAGTTTCC------TCAGGAGTTACCAGCGCCGCCAAGGTGACTAATCCGCATGCTAAASizeHit CountTotal NormTotal
No Reads
droEle1
GGACCAGGAGTCCGCATCCCATTGTGCAACAGCTGCAACGTGCAGATCAGGTGAACAG-------------------AGCATCC--C------------------AGTTGGTT-TGTTGTT-GTGGCCTTCCGAGTTTGAA---------------T--------------------TGTGTTTATTTTGTGGCTG-----------------------------------------AGATAGATACTAATCCAGAATGTCAATAGATGGTTTTGATATCTTTTGATTTATGTTTAATCCAACGAAGAACTTATGGATATCTGACTTTGTCTTTTGATTTGTGTTTGTTTGTGGCATTGAAAGTTACTAATCC---------------------------------------------AAAGAGGAATTAGGTATATCTACAGAC--------------------------TTTTGTGATGATTTTG-ATATCTGAC-------------------------------------------------------------------------------------------------------------TAAGTG---------TTAC------CTC-----------------------------------------------------------------------------------------------------------------------------------------------------T-------------------------------------------------GTTA-TTTTTTGTGATCAGCTTCCTACTGAAGAGCTCGATCCCAGCCTGA-------------------------------------------------------------------------------------------------TTCCCACTAATT----ACCT-GCAACT---AATCTAACC-CGC------TCGCT-TTTTGTG-TTT-TGTT-T-CCTC-CG---TTTT---GTTGCAGTTCCC------ACAGGAGTTGCCACCGCTGCCAAGGTCACTAATCCGCATGCTAATSizeHit CountTotal NormTotal
No Reads
droRho1
GGACCCGGAGTGCGCATCCCACTGTGCAACAGCTGCAACGTGCAGATCAGGTGAACAG-------------------AGCATCC--C------------------CG--AGTT-CGTTGTTG----GTTTCCGAGTTTGAT---------------T--------------------TGT------------------------------------------------------------------------------------------------------------------------------------------------------------------GTTTATTTGTGGCTTCGAAAGATACTAATTC---------------------------------------------AAAGAGGA--------TATCCTGAGAT--------------------------TTTTGTGACCATATTG-ATATCTGAC-------------------------------------------------------------------------------------------------------------T--TTTAATGACCTTTTCC------CTC------------------------------------------------------------------------------------------------------------------------------------------------------------------TT---TT-----TTGTT-ACTTATTT------TAAGAGTTG-TTTTTTGGGATCAGCTTCCTACTGAAGAGCTTGATCCCAGCCCGATACCCA--------TTAATTTGACTTACTTATTTTAAGAGTTATTTTTTGGGATCAACTTCCTACT---GAA----------TTGATCCCAGCACGATTCCCACTAATT---TGCCT-GCAACC---AATCTAACC-CGC------TCGCT-TTTTGTG-TTT-TGTT-TAC-CC-CG---TTTT---TTTGCAGTTCCC------AAGGGAGCTACCACCGCTGTCAAAGCCACTAATCCGCATGCTAATSizeHit CountTotal NormTotal
No Reads
droFic1
GGACCCGGAGTGCGCATCCCCTTGTGCAACAGCTGCAACGTGCAGATCAGGTGAACACG----------------AGAGCATCC--C------------------GG--AGTTCTGTTGTG-------TTTTCAGTTTGTG---------------ATTGAAGTTCT-------G-----------------------AATG-------------TA-------------------------------------------------------------------------------------------------------------------------------TTACTTTTACCCCTGAGTGAAACTAATCA---------------------------------------------AAAAAGAAGT--------------GTC----------------------------------------AA-ACACCTGACTT--GT-TC----CCATTTTAT-------------------------CCA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTAATCTATGTTATGTTCAATAATTCTAGTTTTAAGAGTTAATTTGTTTTGTTTAGCTTTCCTCTGAA--------------------------------------------------------------------------------------------------------------------CCCTTACTAATT---TACCT-GCCAGT-A-AACCTAACCTCGC------TCGCT-TTTCAT-------GTT-TAC-CC-CG---ATTT---GTTGCAGTACCC------GCAGGATTGAATACCGCTGCCAAGGCCACTAATCCGCATGCTAATSizeHit CountTotal NormTotal
No Reads
droKik1
GGACCCGGTGTGCGTATCCCACTATGCAACAGCTGCAACGTGCAGATCAGGTGAACAAG------------------AGCATCC--C------------------AG--CGTT-C----------------AATATTTGATGTTTTTTGATATTT-C--------------------TGTGTTTAATTTGTTGTTG-----------------------------------------------------------------------------------------------------------------------------------------------------------------GGAATGATTCTTAACCCTTG---------AAAAACAATCTTTAAGAGATTTTTAAGGGTTCCAAGAGGTAT-------CCCTTGGGAT--ATC------------------------------------------CTTA-------CTTTAAG--------TTAATTATTGTTTATATTT----A--CCAATTAACCAAGGCATTT-TT--------------------------------------------TG---------T---------------------------------------------------------------------------------------------------------------------------------------------------TATATCTTTTATTTTA-----------------------------ATTAACTT------TAAGTGTTC--TTTTTGGGATCAGCTTCCTACTGAAAAGCTTGATCTCACCCAGA-------------------------------------------------------------------------------------------------TCCTCACTAATT---CGCAT-GATTTT-A-AACCTAACC-CAATGCCGCCTGTT-T-----------TGT----------------------TTGCAGTTCCC------ACAGGAGCTCCTGCCGCTGTCAAGGCCACTAATCCGCATGCTAATSizeHit CountTotal NormTotal
No Reads
droAna3
GCACCCGGAGTGCGCATCCCACTGTGCAACAGTTGCAACGTCCAGATCAGGTGAAGTTA---AAGAT----------------------GGTTGTTGCATGTTCCAG--TGTT-TGATTTT-TTGGCCT--TGAGTTTGAT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTTTC-----------------------------------------------------------------------TTTAGAT----------------------------------------TCTACA--TGAA-------C------ATTTATGTTTACTT------------TATAA--TCC----------A--TTA-TTTAA--CATAT-AATTACTTTCAGCTTTTAAGT-ATCTGAATAACCC---------AAAT------CTTTGTGAA-TTGCTG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGAATCGGCTCCCTTCTGATGGGCCCAATTCCAGCCAG---------------------------------------------------------------------------------------------------C---TCTAATT---CGCAT-GCTCTGTACACGCTAACC-CGC------TTGTT-TTTTGTC-TTGCT-CTGTGGC--------CTTT---GTTGCAGTTCCT------CCAGCA---------GCTGCGAACTCCACTAATCTGCAT------SizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCCT------CCAGCA---------GCTGCGAA......................1911.001100000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCCT------CCAGCA---------GCTGCG........................1811.001100000
...........................AACAGTTGCAACGTCCAGATCAGAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.001000001
...CCCGGAGTGCGCATCCCACTGTGCAACA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.001000010
.CACCCGGAGTGCGCATCCCA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001000001
.....CGGAGTGCGCATCCCACTGTGCAACA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.001100000
.......................GTGCAACAGTTGCAACGTCC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001000001
.........................GCAACAGTTGCAACGTCCAGATCA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.001000001
....................ACTGTGCAACAGTTGCAACGTT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001100000
.................CCCACTGTGCAACAGTTGCAACG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001000100
.......................GTGCAACAGTTGCAACGTCCAGATCAGAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2911.001000010
.................................TGCAACGTCCAGATCAGAC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1920.501010000
droBip1
GCACCCGGAGTGCGCATCCCACTGTGCAACAGCTGCAACGTGCAGATCAGGTGAAGTTA---ATGAT----------------------GGATGTTGCATGTTCCAG--TGTT-CGATGTT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTGGCCTCTTATGTTTCTAAGAGGC----------------------------------------------------------------------------------------------------------------------------------------AATTATGT-------------------------TCC----------A--TTTTTTTAA--CTAATTTATTACTATTCG-TTTTAAGT-ATTCTAATAACCC---------AAAA------ATTGGTTTATTTACCA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGGATTGGCTCCCTACTGATGAGCGCAATCCCCGCCAG---------------------------------------------------------------------------------------------------C---TCTAATT---TGCAT-GCTCCATACACGCTAACC-CGC------TTGTT-TTTTGTT-TTTCT-CTGTGGC--------CTTT---GTTGCAGTGCCT------CCAGCA---------GCTGCTAACACCACTAATCTGCAT------SizeHit CountTotal NormTotal
No Reads
dp5
GCACCGGGAGTGCGCATCCCTCTGTGCAATAGCTGCAACGTGCAGATCAGGTGAAGAGC------------------GGCATCC--C------------------C---ACCT-CGTTGTG-------TTCTCTGTTC-----------------TGTTGATGTTCT-------C-----------------------CATG-------------TTCTTTAA---------------------------------------------------------------------------------------------------------------------------------------GAGTGATTCTAACCCGCTGT---------T------------------------------------------------------------------------------------------------------------------------------------------------------A--------------------------------------------------TATCTAAGT-ATCA--------G---------ATAGAGCCCT-------------CCG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGGATCAGCTTCCTAGTGATCAGCT-GATGTCAGGCGGGTTCTCTGATGCCCTTT---------------------------------------GTTTTTGTTTTTATTAACTAAGTTTTAAG-TGTTT-------CGCCAACTAATT---TGCAT-GCCTGT---GACCTAACG-CGC------TCGCC---CTGTG-TTC-TGTC-T----C-CG----TTC---GTTGCAG------------------------CCGCCGTCAAGCAAACTAATTCGCATGCAAACSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
.............GCATCCCTCTGTGCAATAGC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010001000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAGAGCCCT-------------CCG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGGATCAGCC........................................................................................................................................................................................................................................................................................2311.0010001000000
.................CCCTCTGTGCAATAGCTGCA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010100000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TT-------CGCCAACTAATT---TGCAT-GCCTGT---G...........................................................................................................................2611.0010100000000
droPer2
GCACCGGGAGTGCGCATCCCTCTGTGCAATAGCTGCAACGTGCAGATCAGGTGAAGAGC------------------AGCATCC--C------------------C---ACCT-CGTTGTG-------TTCTCTGTTC-----------------TGTTGATGTTCT-------C-----------------------CATG-------------TTCTTTAA---------------------------------------------------------------------------------------------------------------------------------------GAGTGATTCTAACCCGCTGT---------T------------------------------------------------------------------------------------------------------------------------------------------------------A--------------------------------------------------TATCTAAGT-ATCA--------G---------ATAGAGCCCT-------------CCG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGGATCAGCTTCCTAGTGATCAGCT-GATGTCAGGCGGGTTCTCTGATGCCCTTT---------------------------------------GTTTTTGTTTTTATTAACTAAGATTTAAG-TGTTT-------CGCCAACTAATT---TGCAT-GCCTGT---GACTTAACG-CGC------TCGCC---CTGTG-TTC-TGT-----CTC-CG---TTTC---GTTGCAGC------------------------CGCCGTCAAGCAAACTAATTCGCATGCAAACSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
.................CCCTCTGTGCAATAGCTGCA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001010000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAACTAATTCGCATGCAAAC2011.001010000
droWil2
GGACCCGGAGTGCGTATCCCCTTGTGTAATAGCTGCAATGTGCAGATCAGGTGAAGAAATAAA----------AGAGAGTTTGC--C------------------CG---------TTGTT----------------------------------AGTTGTTGTTCT-------T-----------------------TATG-----------------------------------------------------------------------------------------------------------------------------------------------------------------ATTGTTATC-------------------------------------------------------------------------------------------------------------------------------------CTA-GT--------------------------TA------------------------------------------------------TAAGA-GTTCTTAACCCCC---------AAGGACCTCATTGGGTCTATTT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCTGCAT---------------------------------------GTTTTTGTTC----------------------------------CGAACTAA-------------------CCCTTAAACC-CGT------TTGCC-TT--GCG-TTT----C-TA-TTC-CA---TGTT---GTTGCAGTT------------------------GCGCCTAAGCCCACTAACCCACAAG-----SizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
........................TGTAATAGCTGCAATGTGC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00100001
.........GTGCGTATCCCCTTGTGTA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00100010
.......GAGTGCGTATCCCCTTGTGTAATAGCT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.00100001
..........................................................ATAAA----------AGAGAGTTTGC--C------------------CG---------TTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.00100100
........AGTGCGTATCCCCTTGTGTA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00100001
.......GAGTGCGTATCCCCTTGTGTA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100001
....................................................GAAGAAATAAA----------AGAGAGTTTG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100100
droVir3
GGACCGGGGGTGCGCATCCCGCTGTGCAACAGCTGCAATGTGCAGATCAGGTGAACAGTTCCC----AACAATACGAAGTTTCTC-C------------------AG--TTTA-TGTTGTTC----GTTC------TCGTT---------------CTCGCAG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTCGCATGTTT---------------------------------------------------------------------------------------------------------------------------------------GC-CC----CAATTATCT-------------------------CCA----------G--TTTAATTAAATCTAATTTA-----------ATCTAAGCTTATCTAATAAC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTATTAATTCTGCGCAT-GTTTC--AAGCTCTAACC-CCCTAAAACTTGTT-TGTTGTT-TTT-CGTTCTCGTTTTCGTTTCATT---GTTGCAGCG------------ATCCCTTCGCTAGCCTCCAAGCCCAATAACACGCATGCTTATSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
.................................TGCAATGTGCAGATCAGGG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001001000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................CGCAG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTCGCATGTTT---------------------------------------------------------------------------------------------------------------------------------------GC-CC----CA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001001000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTT-TTT-CGTTCTCGTTTTCGT........................................................................2111.001000000000000000000000000001000000000000000000000000000000000000
.........GTGCGCATCCCGCTGTGCA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001000000000000000010000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TC--AAGCTCTAACC-CCCTAAAAC.........................................................................................................2211.001000000000000001000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTTGTT-TTT-CGTTCTCGTT.............................................................................2011.001000000000000000010000000000000000000000000000000000000000000000
droMoj3
GGACCAGGCGTTCGCATCCCACTGTGCAACAGCTGCAATGTGCAGATCAGGTGAAGAA-------------------GAATTCC--CCATGCTGTTTCA------AG--TTCT-CGTTGTT-------GTTTTTGTTT-----------------TG-----------------------------------------TTTGATTTCTATTCATGTTATTTTACTATCTGGAGTCCCAGGTGAATTCCAGGCTCCAATTGTTACG------------------------------------------------------------------------------------TATACTTCTAATTCCCCCCAAGCC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACAGCTGACCTGAGACTT-----GCTTCTCTGACTGTTTAGAGAGCAAGTCCTGCATGATTGCTAACCACTTACCTCGATTATATATACGGCTTGGCTGGCGAAGCTCTGATTAATCTCAGATTGTCTTTGCCA--------------------------------------------------------------------------------------ATGCCATTTAG------------------------------------------------------------------------------GTCTAAG-TCTCC-------A----GCTAATTCATTGCAC-GAACTGTAAACCCTAACC-AAT-----TTCGTT-TGTTGTT-TTT-CGTTATCGTTC-CA---TT-----ATT-CCCTTGCC------GCAGGGCCTCCTCCGCTTGCTCAGCCAATTAACTCGCATGCTAATSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
................................................................................................................T-CGTTGTT-------GTTTTTGTTT-----------------TG-----------------------------------------TT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001000010
.....................CTGTGCAACAGCTGCAATGTGC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001100000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCGCTTGCTCAGCCAATTAACT...........2211.001100000
...............ATCCCACTGTGCAACAGCTGCAATGTGCA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2911.001100000
...............ATCCCACTGTGCAACAGCTGCAAT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.001100000
..................................GCAATGTGCAGATCAGGG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.001100000
droGri2
GCACCCGGTGTCCGCATCCCATTGTGCAACAGCTGCAATGTGCAGATCAGGTGATAAATTGAA-----TCAATCTGAAGTTCCCCCT------------------AC--ACCT-TGTTGTT-------GTTTATATTTGCT---------------GTTGTTGTTGATTAAC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTA-GC--------------------------GATAAGTTGC----------A--TTG-TTGAA--CAAAG---TTACTTGCAG-----------TTCTTAAAACAC---------ATAAAGCTCT-------------CTGGTCAACAGCTCGCTTGTGTCTTCGAGCGATTTACAAACTGTACAGTTTGACAGGCTTTCTTGATTGA------------------------------------------------------------------------------------------------------------------------------------------------------------AATCTACA---------------------------------------------------------------------------------------AT-AATC---------CAGCACTAATTCCACGCAT-GTTTT--ACGCTCTAACC-CGCTAACAATTGTT-TGTTGTT-TTC--GTTTTCGTTT-CG---TTCT---GTTACAGCTCCCTCCTCCTCGTCCGCCCCCACTCTTGCCAAGCCCAATAACATGCATGCTAACSizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads

Generated: 05/19/2015 at 04:56 AM