ID:

dsi_12880

 Coordinate:

3l:302749-302901 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-18.5 -18.2 -18.1

Flybase annnotation

five_prime_UTR [3l_302599_302968_-]; exon [3l_301959_302968_-]

No Repeatable elements found

Sense Strand Reads

#############################################################################################################################################################################################################################################################
TGGCCAGCATGGAGCTCCGTTGCGGTTGCCGGTTTGTCGTTTAGAGAGAGGCAAGACGACTAGCTAGGAGAGACTCTCCACCAAACTTTTATGTTTATGGTTGTTCTTTTTGGTGTTGTCGGTGTCGTTGTCGCAATCGCAGCCGTTTTTAGACCCGCGTCACATTCGTTGTCAATTTTGGGTTTCCATTGTTGTTGGTTTAGATTTGTGACTCGGCGAGTGTGCGTGCATTGCTCAAAGCGAACGGCGATCG
*********************************************************************((((....(((..((((......)))).)))....))))....(((.((.(((.(((((((.((....))))))........)))))))).)))....................********************************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553487
NRT_0-2 hours eggs
 SRR553488
RT_0-2 hours eggs
 SRR618934
dsim w501 ovaries
 GSM343915
embryo
 SRR553486
Makindu_3 day-old ovaries
 M025
embryo
 M024
male body		 O002
Head
 SRR553485
Chicharo_3 day-old ovaries
 SRR902008
ovaries
 SRR902009
testis
........GTGGAGGTCCGTAGCGGT................................................................................................................................................................................................................................... 18 3 20 19.25 385 270 113 0 0 2 0 0 0 0 0 0
.........TGGAGGTCCGTAGCGGT................................................................................................................................................................................................................................... 17 2 7 9.29 65 38 27 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................................TTAGATTTGTGACTCGGCGAGTGTGCG........................... 27 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0
.....................................................................GAGACTCTCCACCAAACTTTTAT................................................................................................................................................................. 23 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0
.........................................................................................................................................................................................................AGATTTGTGACTCGGCGAGT................................ 20 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 1
.................................................................................................................TGTTGTCGAGGTCGTTGTCGC....................................................................................................................... 21 2 3 1.00 3 3 0 0 0 0 0 0 0 0 0 0
...........................................................CTAGCTAGGAGAGACTCTC............................................................................................................................................................................... 19 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0
.....................................................................................................................................................................TCGTTGTCAATTTTGGGT...................................................................... 18 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0
.............................................................................................................................................................CGTCACATTCGTTGTCGATTT........................................................................... 21 1 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0
.......................................TTTAGAGAGAGGCAAGACGACTAGCAA........................................................................................................................................................................................... 27 1 1 1.00 1 0 0 0 0 0 0 0 0 0 1 0
.......................................................................................................................................................GACCCGCGTCACATTCGTTGTC................................................................................ 22 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0
..GCCAGCATGGAGCTCCGTTGC...................................................................................................................................................................................................................................... 21 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0
.................................TTGTCGTTTAGAGAGAGGCAAGACGA.................................................................................................................................................................................................. 26 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0
.....................................................................................................................GTCGGTGTCGTTGTCGCAATCGCAGC.............................................................................................................. 26 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0
..GCCAGCATGGAGCTCCGT......................................................................................................................................................................................................................................... 18 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0
.......CATGGAGCTCCGTTGCGG.................................................................................................................................................................................................................................... 18 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0
............................CCGGTTTGTCGTTTAGAGAGAG........................................................................................................................................................................................................... 22 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0
........GTGGAGCTCCGTAGCGGT................................................................................................................................................................................................................................... 18 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
........................................................................................................TCTTTTTGGTGTTGTCGGTGTCG.............................................................................................................................. 23 0 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0
........................................................................................................................................................................................................TAGATTTGTGACTCGGCGAGTGTGC............................ 25 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0
...........................................................................................................TTTTGGTCTTGTCAGTGTCGT............................................................................................................................. 21 2 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0
.........TGGAGGTCCGTAGCGG.................................................................................................................................................................................................................................... 16 2 15 0.53 8 4 3 0 0 1 0 0 0 0 0 0
........ATGGAGGTCCGTAGCGGTC.................................................................................................................................................................................................................................. 19 3 7 0.14 1 1 0 0 0 0 0 0 0 0 0 0
..........................TGCGGGTTTGTCGTT.................................................................................................................................................................................................................... 15 1 9 0.11 1 0 1 0 0 0 0 0 0 0 0 0
...............................................................................................CATGGCTGTTCTCTTTGGTG.......................................................................................................................................... 20 3 12 0.08 1 0 0 0 0 0 0 1 0 0 0 0
........GTGGAGCTCCGTAGCGATT.................................................................................................................................................................................................................................. 19 3 14 0.07 1 1 0 0 0 0 0 0 0 0 0 0
.......................................................................................................TTCGTTGTGGTGTAGTCGG................................................................................................................................... 19 3 18 0.06 1 0 1 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................................................GTGAATTGCTCAAAGG............ 16 2 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0
..............................................................................................................TGGGGTTGTCGTTGTCGTTGT.......................................................................................................................... 21 2 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0
...............................GTTTGTCGTCGAGAGA.............................................................................................................................................................................................................. 16 2 20 0.05 1 0 0 1 0 0 0 0 0 0 0 0

Anti-sense strand reads

ACCGGTCGTACCTCGAGGCAACGCCAACGGCCAAACAGCAAATCTCTCTCCGTTCTGCTGATCGATCCTCTCTGAGAGGTGGTTTGAAAATACAAATACCAACAAGAAAAACCACAACAGCCACAGCAACAGCGTTAGCGTCGGCAAAAATCTGGGCGCAGTGTAAGCAACAGTTAAAACCCAAAGGTAACAACAACCAAATCTAAACACTGAGCCGCTCACACGCACGTAACGAGTTTCGCTTGCCGCTAGC
**********************************************************************((((....(((..((((......)))).)))....))))....(((.((.(((.(((((((.((....))))))........)))))))).)))....................********************************************************************* 		Read size # Mismatch Hit Count Total Norm Total SRR618934
dsim w501 ovaries
 SRR553487
NRT_0-2 hours eggs
 SRR553488
RT_0-2 hours eggs
 M023
head
 M024
male body		 SRR553486
Makindu_3 day-old ovaries
 GSM343915
embryo
 M025
embryo
.................................................................................................................................................AAAAATTTGGGCGCACTGT......................................................................................... 19 2 1 1.00 1 0 1 0 0 0 0 0 0
.....................................................................CTCTGAGAAGTGGTTTGA...................................................................................................................................................................... 18 1 1 1.00 1 1 0 0 0 0 0 0 0
.....................................................................CTCTGAGAAGTGGTCTGAA..................................................................................................................................................................... 19 2 1 1.00 1 1 0 0 0 0 0 0 0
............TCGAGGCTACGCCAAC................................................................................................................................................................................................................................. 16 1 3 0.33 1 1 0 0 0 0 0 0 0
..................................................................................................................................................AAAATATGGGCGCACTGT......................................................................................... 18 2 3 0.33 1 0 0 1 0 0 0 0 0
.............................................................................................................................................................................................................................CAGGGAGGTAACGAGTTTCG............ 20 3 6 0.17 1 0 0 0 0 1 0 0 0
....................................................................................................................................................................................CCAGAGGTAGTAACAACCAA..................................................... 20 3 8 0.13 1 0 0 0 1 0 0 0 0
............................................................ATCGAGCCTCTCTGACA................................................................................................................................................................................ 17 2 8 0.13 1 0 0 1 0 0 0 0 0
.......................................................................CTGAGAGCTGGTTCGA...................................................................................................................................................................... 16 2 20 0.10 2 0 0 0 0 0 2 0 0
.........................................................AAGATAGATCCTCTCTGAG................................................................................................................................................................................. 19 3 10 0.10 1 0 0 0 0 0 0 1 0
.............................................................................................................................................................................................................................CAGGGAGGTAACGAGTTTC............. 19 3 20 0.10 2 0 0 0 2 0 0 0 0
.......................................................................................................................................................................................................................................ACGAGCATCGCTTGCCGC.... 18 2 12 0.08 1 1 0 0 0 0 0 0 0
.................................................................TCGTCTCTGAGAAGTGG........................................................................................................................................................................... 17 2 14 0.07 1 1 0 0 0 0 0 0 0
..................................................................................................CCGACAAGAAAGACCAGAAC....................................................................................................................................... 20 3 15 0.07 1 0 0 0 0 0 0 0 1

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim2 3l:302699-302951 - dsi_12880 TGGC-CAGCATGGAGC-----------TCCGT--------------------------------------------TGCGGTTGCCGGTTTGTCG----------TTT--------A--------GAGAGA------GGCA-----AGACG--A---------CT---------AG------C---TAGGAG--A---GACT--CTCCA--------------------------------------------C-------CAAACTTTTATGTTTATGGTTGTTCTTTT--TGGTG---------------------------TTGTCGGTGTCGTTGTCGCAATCG--CAGCCGTTTTTAGACCCGCGT---------CACATTCG-------------------------------------TTGT------CAATT-T-----TGGGTTTCCATTGTTGTTGGTT---------------------------------------------------------------------------TAGATTTGTGACT------------------------CGGCGAGTGTGCGT-------------GCATTGCTCAAA--------G---CGA--------------ACG------------------GC----G---ATCG
droSec2 scaffold_2:363742-363994 - TGGC-CAGCATGGAGC-----------TCCGT--------------------------------------------TGCGGTTGCCGGTTTGTCG----------TTT--------A--------GAGAGA------GGCA-----AGACG--A---------CT---------AG------C---TAGGAG--A---GACT--CTCCA--------------------------------------------C-------CAAACTTTTATGTTTATGGTTGTTCTTTT--TGGTG---------------------------TTGTCGGTGTCGTTGTCGCAATCG--CAGCCGTTTTTAGACCCGCGT---------CACATTCG-------------------------------------TTGT------CAATT-T-----TGGGTTTCCATTGTTGTTGGTT---------------------------------------------------------------------------TAGATTTGTGACT------------------------CGGCGAGTGTGCGT-------------GCATTGCTCAAA--------G---CGA--------------ACG------------------GC----G---ATCG
dm3 chr3L:332037-332289 - TGGC-CAGCATGGAGC-----------TCCGT--------------------------------------------TGCGGTTGCCGGTTTGTCG----------TTT--------A--------GAGAGA------GGCA-----AGACG--A---------CT---------AG------C---TAGGAG--A---GACT--CTCCA--------------------------------------------C-------CAAACTTTTATGTTTATGGTTGTTCTTTT--TGGTG---------------------------TTGTCGGTGTCGTTGTCGCAATCG--CAGCCGTTTTTAGACCCGCGT---------CACATTCG-------------------------------------TTGT------CAATT-T-----TGGGTTTCCATTGTTGTTGGTG---------------------------------------------------------------------------CAGATTTCTGACT------------------------CGGCGAGTGTGCGT-------------GCATTGCTCAAA--------G---CGA--------------ACG------------------GC----G---ATCG
droEre2 scaffold_4784:332049-332298 - TGGC-CAGCATGGAGC-----------GTCGT--------------------------------------------TGCGGTTGCCCGTTTGTCG----------TTT--------A--------GAGAGA------GGCA-----AG-----A---------CT---------AG------C---TGGGAG--A---GACT--CTCCA--------------------------------------------C-------CAGACTTTTATGTTTATGGTTGTTCTTTT--TGGTG---------------------------TTGTCTGTGTCGTTGTCGCAATCG--CAGCCGTTTTTAGACCCGCGT---------CACATTCG-------------------------------------TTGT------CAATT-T-----TGGGCTCCCATTGTTGTTGGTT---------------------------------------------------------------------------TAGATTTGTGAGT------------------------CGGCGAGTGTGCGT-------------GCATTGCTCAAA--------G---CGA--------------ACG------------------GC----G---ATCG
droYak3 3L:311710-311959 - TGGC-CAGCATGGAGC-----------TCCGT--------------------------------------------TGCGGTTGCCGGTTTGTCG----------TTT--------A--------AAGAGA------GGCA-----AG-----A---------GT---------AG------C---TGGGAG--A---GACT--CTCCA--------------------------------------------C-------CAGACTTTTATGTTTATGGTTGTTCTTTT--TGGTG---------------------------------TTGTCGTTGTCGCAATCG--CAGCCGTTTTTAGACCCGCGT---------CACATTCG-------------------------------------TTGT------CAATT-T-----TGGGTTTCCATTGTTGTTGGTT---------------------------------------------------------------------------TGGATTTGTGACT------------------------CGCCGAGTGTGCGT-------------GCAC-ACTCAAA--------G---CGA--------------ACG------------------GTGATCGGTGATCG
droEug1 scf7180000409184:356774-357030 - TGGC-CAGCATGGAGC-----------TGCCT--------------------------------------------TGCGGTCGCCGGTTTGTCG----------TTT--------A--------AAAAGAGA----GAGA-----GGAAG--G---------CT---------AG------C---TGAGAG--A---GACT--CTCCG--------------------------------------------C-------CAGACTTTTATGTTGATGGTTGTTCTTGT--TGGCT---------------------------------TTGTCGTTGTCGCAATCG--CAGCCGTTTTTAGACTCCGGC---------CAGCGTCG-------------------------------------TTGT------CAATT-T-----TGGGTTTCGATTGTTGTCGGAT---------------------------------------------------------------------------TGGATTTGTGAGT--------------CGG---CGCTCGGCGAGTGTGCGT-------------GCATTGCCCAAAA-------G---CGA--------------ACG------------------GC----G---ATCG
droBia1 scf7180000300910:394777-395041 - TGGC-CAGCATGGAGC-----------TGCGC--------------------------------------------TGCGGTGGCCGGTTCGTCG----------ACT--------AGTCGGTTGGAGAGC------GGGA-----AGACA--G---------CT-----------------C---TGCGAG--A---GTCT--CTCCA--------------------------------------------T-------CAGGCTTTTATGTTTATGGTTGTTCTTTT--TGCTG---------------------------TTGTCGCTGGCGTTGTCGCAATCG--CAGCCGTTTTTAGACCCGCGT---------CACATTCG-------------------------------------TAGT------CGATT-T-----TGGGCTTCGATTGTTGTTGGCTC----------------------------------------GGAT------------------------------TGGATTTGTGACT------------------------CGGCGAGTGTGCGT-------------GCACTGCCCAAAC-------G---CGA--------------ACG------------------GT----G---ATCG
droTak1 scf7180000415846:403810-404070 + TGGC-CAGCATGGAGC-----------TGCCT--------------------------------------------TGCGGTTGCCGGTTTGTCG----------TTT--------A--------GAGAGA------GCAA-----AGACAACA---------AC---------AA------C---CGGGAG--A---GTCT--CTCCA--------------------------------------------T-------CAGGCTTTTATGTTTATGGTTGTTCTTTT--TCTTTTT--------------------T--GGTTGCCGTTGTCGTTGTCGCAATCG--CAGCCGTTTTTAGACCCGCGT---------CACATTCG-------------------------------------TTGT------CAATT-T-----TGGGTTTCGATTGTTGTTGCTT---------------------------------------------------------------------------CGGATTTGTGACT------------------------CGACGAGTGTGCGT-------------GCATTGCCCAAAA-------C---CGA--------------ACG------------------GC----G---ATCG
droEle1 scf7180000491249:417264-417507 - TGGC-CAGCATGGAGC-----------TGCGT--------------------------------------------TGCGGTTGCCGGTTTGTCG----------TTT--------A--------AAGAGA------GA-A-----AA-----A---------CA---------AA------C---TGGGAG--A---GTCT--CTCCA--------------------------------------------T-------CAGGCTTTTATGTTTATGGTTGTTCTTTT--TGGTG---------------------------------TTGTCGTTGTCGCAATCG--CAGCCGTTTTTAGACCCGCGC---------CAGCGTCG-------------------------------------TTGT------CACTT-T-----TTTGTTTCGAATGTTGTTGGCTG--------------------------------------------------------------------------TGGATTTGTGACT------------------------CGGCAAGTGTGCGT-------------GCATTGCCCAAA--------G---CGA--------------ACG------------------GC----G---ATCG
droRho1 scf7180000768167:24922-25168 + TGGG-CAGAATGGAGC-----------TGCGT--------------------------------------------TGCGGTTGCCGGTTTGTCG----------TTT--------A--------AAGAGA------GA-A-----AGA-------------------------AA------C---TGGGAG--A---GTCT--CTCCA--------------------------------------------T-------CAGGCTTTTATGTTTATGGTTGTTCTTTT--TGGTG---------------------------TTGTCGTTGTCGTTGTCGCAATCG--CAGCCGTTTTTAGACCCGCGC---------CAGCGTCG-------------------------------------TTGT------CACTT-T-----TTTGTTTCGATTGTTGTTGGTT---------------------------------------------------------------------------TGGATTTGTGACT------------------------CGGCGAGTGTGCGT-------------GCATTGCCAAAA--------G---CGA--------------ACG------------------GC----G---ATCG
droFic1 scf7180000454105:443487-443753 - TGCC-CAGCATGGAGC-----------TGCGT--------------------------------------------TGCGGTTGCCGGTTTGTCG----------CTT--------A--------AAGAGA------GGAA-----AG-----A---------TT---------AA------C---TGGGAG--A---GTCT--CTCCA--------------------------------------------T-------CGGTCTTTTATGTTTATGGTTGTTCTTTT--TGGTGTTGCCATTGCCGCTG-------C--CGTTGTCGTTGTCGTTGTCGCAATCA--CAGCCGTTTTTAGACCCGCGC---------CAGCGTCG-------------------------------------CTGT------CAATT-T-----TGGGCTTCGATTGTTGTTGGAT---------------------------------------------------------------------------TGGCTTTGTGACT------------------------CGACGAGTGTGCGT-------------GCATGGCCCAAA--------G---CG---------------ACG------------------GC----G---ATCG
droKik1 scf7180000301710:109737-109995 + TGGC-CAGCATGGAGC-----------GGCAC--------------------------------------------TGCGGTTGCCC--CTGCCG--------GGTCT--------A---------AGAGA------GA--------------------------------------------------GAG--AGCGGTCT--CTCCA--------------------------------------------T-------CG-------TTGTTTACGGCTGTTCTTTTGTCGTTG---------------------------TCGCCGCTGTCGTTGTCGCAATCA--CAGACGTTTTTAGACA-GCGC---------CGCTGCCT-------------------------------------TCGT------CAGTTTT-----TGGGTTCCGATTGTTGTGGACT---------------------------------------------------------------------------CGGAGTCG-GATTCGAATTCGGA--TTCAG---ATT-TTGCGAGTGTGCGT-------------GGATTGCATAAA--------G---AGA-----A-TTCG---GCG------------------GC----GATCATCG
droAna3 scaffold_13337:279606-279850 - TGGC-CAGTATGGAGC-----------TGCCC--------------------------------------------TGCTGTGGCGGGTTTGTCG----------TCT-----GCTAGTC-----GAGAGA------GAGG-----AG-----A---------AT---------GG------G---CCGGAG--A---GTCT--ACTCG--------------------------------------------G-------CGGACGTTGTTGCTTGCGGTGGTTCTTTT--TGGCG---------------------------------TTGTCGTTGCCGCAATCG--CAGCCGTTTTTAGACC-GCGCC---GTCGTCGGCGTCG-------------------------------------TTGT------CACTT-T-----CGGATCTCGATTGTTGTGGACT---------------------------------------------------------------------------TTTGTTGGCTGTT------------------------C----------TTT-------------ACTTTGTATTAA--------T---TCG--------------ACG------------------GC----A---ATCG
droBip1 scf7180000395155:484781-485016 + TGGC-CAGCATAGAGC-----------TGCGC--------------------------------------------TGCTGTGGCGGTTGTGTCG----------TCT-----GCTAGCCG-CGAGAGAGA------GCGG-----AG-----A---------AT---------GG------T---CCGGAG--A---GTCT--ACTCG-------------------------------------------------------------------GCGGTGGTTCTTTT--TGGCG---------------------------------TTGTCGTTGCCGCAATCG--CAGCCGTTTTTAGACC-GCACCAGCGTCGTCAGCGTCG-------------------------------------TTGT------CACTT-CACAGATCTTTTCGGATTGTTGTGAACTG--------------------------------------------------------------------------TTTGTTCTTTACT-----------------------------------TTT-------------GTATT-----AA--------T---TCA--------------ACG------------------GC----A---ATCG
dp5 XR_group8:1223489-1223882 - TGGC-CAGCATGGAGC-----------TGCT-------GCC-TTCTCGCGGTCTCCGTCGTTGTTGTGGTTGTCGTTGCGGTTGCCGGTTTGTCG----------TTT-----ACTA--------AAGTGA------GA-G-----AG-----A---------GA---------GA-----------GAGAGAGA---G-CT--GCCTG--------CC-------------------TGTCTGTCTGTCTGTCCGTCGATCGGTCGTTGTTG--TATGGTTGTTCTTTT--TGGGG---------------------------C--TCGTTGTCGTTGTCGCAATCG--CAGCCGTTTTTAGACCTACGC------CGTCAACGTCGCAC------------------GTCGCG--TCGTCGTTTTGT------CATTT-T-----TGAA-TCCGATTGTTGTTGATTTTACTCGTATGCTTTGTTGTTGTTTTATTTTTTGGTGCTGCTTTG------------------------------CGTGCTCGTGTGC------------------------GTGTGCGTGTGCGTGAGTGTATTCTGTGCCTTGCATAAAAGGCCGAAC---CGA--------------ACAGA----------------GC----G---ATCG
droPer2 scaffold_510:6579-6846 - TGGC-CAGCATGGAGC-----------TGCT-------GCC-TTCTCGCGGTCTCCGTCGTTGTAGAGGTTGTAGTTGCGGTTGCCGGTTTGTCG----------TTT-----ACTA--------AAGTGAGAGAGAGA--------------------------------------------------GAG--AGCTGCCT--GTC-------------------------------TGTCTGTCTGTCTGTCCGTCCCTCGGTCGTTGTTG--TATGGTTGTTATTTT--TGGGG---------------------------C--TCGTTGTCGTTGTCGCAATCG--CAGCCGTTTTTAGACCTACGC------CGTCAACGTCGCAC------------------GTCGCG--TGGTCGTTTTGT------CATTT-T-----TGAA-TCAAAGTGTTGTTGATT---------------------------------------------------------------------------T-------------------------------------------------------------------------------------------------------------------------------------------
droWil2 scf2_1100000004540:1977034-1977420 + TGGC-CGGCATGGAGC-----------GTTGT----CG-TAGTCGTTGCGGTTTCAGTCTTTGCC---TTTGCGTTTGCGTTTGCCGGTTTATCG----------TTT--------A--------G-------------------------------------------------C------C---CGCGAG--A---GAGTCTTCAAAGAGTTGTT------------------------------------------------TTTTTTTG-TTGTAGTTGTTGTTGT--TGTAG---TTGTTGTTGCTT-------A--TGATTCTGTTGAGGTTGTCGCAATCG--TAGCCGTTTTTAGACATACAA------CGTCAGCGTCAG-C------------------GTCGCGACTCGACGTTTTGTCGTTGTCAATT-T------GGATTTTGGTTTT-------A----------------------------------------TATAGTGTGTGTACACAAAAAAACACACTCACTTATAGAGGTGTGTGT--GTGT----GAGTGTGAGCAGCCCTGTGTGCGTATGC-------------GTATTGCATAAAAGTCCAAAATAGTGAGAAGAAATAACAACACA------------------AA----A---ATTG
droVir3 scaffold_13049:3039323-3039610 - TGGCCCGGCATGGTGCGTTGACGTT--TCTGCCGCG-------------------------------------------GTTTGCCGGTTT--CG----------TTA--------A--------GCGAGA---------AAGTCAAC-----AGCAACAAAAAT--------------CAACGCATCAAAA--A---GTTC------------GCTGCACTCCTCAAGCTCCTGTCCCCCCTCTCT--------------CG------CGCGTTCACA-TCGTTCC------------------------------------ATTATTGTCGTTGTTGTCGCAATCATATAGCCGTTTTTAGCCGT-CGC------TGTCGCCGTCGC-CGTCAGCGTCGACGTCAGCGTCT-GCGTCA--GCTTTGTCGCTGTCC-------------GTTTTGATTGTTGTG--------------------------------------------------------------------------------------------------------------------TGGTGTGTTTATTT-------------GTGTTGCT--------------------------------------------------------------------
droMoj3 scaffold_6654:908553-908931 + TGGC-CGGCATGGTGCGTTGACGTCTCTGCGCCGCG-------------------------------------------GTTTGCCGGTTT--CG----------TTA--------A-CT-----GAGAAA------GTCA-----AC-----AATAACAACAACAACAAGAGCAGCGACAACGCATCACAA--A---GTTC------------GTTTCC---------------TTCTCCCTCTCTCCCTT-T-------TCGTTCTCTATCCTCATCGTTTTCTCGCT--TG-CG---------------CGCCATAT--AATTATTGTCGTTGTTGTCGCAATCATATAGCCGTTTTTAGACGT-CGC------TGTCAGCGTCGT-CGTCAACGTCAGCGTCAGCGTCG-GTGTCAGCG--TTCTCGCCGTCA-------------GTTTTGATTGTTGTAC-TT----------------------------------------TGTTG------------------------------TGTGTTTGTGTGT------------------------ATGTGTGCGTGCGT-------------GCGTTT---AAAATCCAAAAC---CCA--------------AGACAAATATATCGTATGGATAC----G---ATCG
droGri2 scaffold_2721:1616-1818 + TGGC-CGGCATGGAGC----------------------------------------------------------------GTTGCCGGTTT--CGCTTGGCTTCGTTTCAAATTTTA--------GCGTGA------AACT-----TAGCA--A---------CA---------CA----------TC--AA--A---GTCC------------GTTCCA---------------TCGCATCTATCTCGCT-----------CGCTCTCACTGCCAATAC-------------G-CA---------------GACCATATAAAATTATTGTCGTTGTTGTCGCAATCATATAGCCGTTTTTAGACGT-CGT------CGTCAGCGTCAC-C------------------GTCA------------CCGT------CA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
TGGC-CAGCATGGAGC-----------TCCGT--------------------------------------------TGCGGTTGCCGGTTTGTCG----------TTT--------A--------GAGAGA------GGCA-----AGACG--A---------CT---------AG------C---TAGGAG--A---GACT--CTCCA--------------------------------------------C-------CAAACTTTTATGTTTATGGTTGTTCTTTT--TGGTG---------------------------TTGTCGGTGTCGTTGTCGCAATCG--CAGCCGTTTTTAGACCCGCGT---------CACATTCG-------------------------------------TTGT------CAATT-T-----TGGGTTTCCATTGTTGTTGGTT---------------------------------------------------------------------------TAGATTTGTGACT------------------------CGGCGAGTGTGCGT-------------GCATTGCTCAAA--------G---CGA--------------ACG------------------GC----G---ATCGSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T---------------------------------------------------------------------------TAGATTTGTGACT------------------------CGGCGAGTGTGCG..........................................................................................2711.00100000000001000000
...............................................................................................................................................................................................G--A---GACT--CTCCA--------------------------------------------C-------CAAACTTTTAT............................................................................................................................................................................................................................................................................................................................................................................................................................2311.00100100000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGATTTGTGACT------------------------CGGCGAGT...............................................................................................2011.00100000000000001000
...................................................................................................................................................................CT---------AG------C---TAGGAG--A---GACT--CTC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00100000100000000000
.................................................................................................................................................................................................................................................................................................................................................................................................TCG-------------------------------------TTGT------CAATT-T-----TGGGT........................................................................................................................................................................................................................................1811.00100000000001000000
..........................................................................................................................................................................................................................................................................................................................................................................GACCCGCGT---------CACATTCG-------------------------------------TTGT------C........................................................................................................................................................................................................................................................2211.00101000000000000000
..GC-CAGCATGGAGC-----------TCCGT--------------------------------------------TGC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100000000000100000
.........................................................................................TTGTCG----------TTT--------A--------GAGAGA------GGCA-----AGACG--A---------.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.00100000000001000000
......................................................................................................................................................................................................................................................................................................................................GTCGGTGTCGTTGTCGCAATCG--CAGC..........................................................................................................................................................................................................................................................................................................................................2611.00100000000001000000
..GC-CAGCATGGAGC-----------TCCGT--------------------------------------------................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.00100000000001000000
........CATGGAGC-----------TCCGT--------------------------------------------TGCGG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.00100000000000100000
....................................................................................CCGGTTTGTCG----------TTT--------A--------GAGAGA------G..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.00100100000000000000
............................................................................................................................................................................................................................................................................................TCTTTT--TGGTG---------------------------TTGTCGGTGTCG............................................................................................................................................................................................................................................................................................................................................................2311.00100000010000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAGATTTGTGACT------------------------CGGCGAGTGTGC...........................................................................................2511.00100000001000000000
droSec2
TGGC-CAGCATGGAGC-----------TCCGT--------------------------------------------TGCGGTTGCCGGTTTGTCG----------TTT--------A--------GAGAGA------GGCA-----AGACG--A---------CT---------AG------C---TAGGAG--A---GACT--CTCCA--------------------------------------------C-------CAAACTTTTATGTTTATGGTTGTTCTTTT--TGGTG---------------------------TTGTCGGTGTCGTTGTCGCAATCG--CAGCCGTTTTTAGACCCGCGT---------CACATTCG-------------------------------------TTGT------CAATT-T-----TGGGTTTCCATTGTTGTTGGTT---------------------------------------------------------------------------TAGATTTGTGACT------------------------CGGCGAGTGTGCGT-------------GCATTGCTCAAA--------G---CGA--------------ACG------------------GC----G---ATCGSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
.....CAGCATGGAGC-----------TCCGT--------------------------------------------TG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1812.0020020
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTGTGACT------------------------CGGCGAGTGTGCGT-------------............................................................................2411.0010010
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GT-------------GCATTGCTCAAA--------G---CGA--------------ACG------------------GC----........2311.0010010
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTTGTTGGTT---------------------------------------------------------------------------TAGATTTGTGA.................................................................................................................................2211.0010100
.................................................................................................................................................................................................................................................................................TTTATGGTTGTTCTTTT--TGGTG---------------------------T.......................................................................................................................................................................................................................................................................................................................................................................2311.0010010
.........ATGGAGC-----------TCCGT--------------------------------------------TGCGGT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010010
............................................................................................................................................A-----AGACG--A---------CT---------AG------C---TAGGAG--A---GACT--CTC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010010
............................................................................................................................................A-----AGACG--A---------CT---------AG------C---TAGGAG--..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010010
..GC-CAGCATGGAGC-----------TCCGT--------------------------------------------TGCG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010010
.GGC-CAGCATGGAGC-----------TCCGT--------------------------------------------TG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010010
..GC-CAGCATGGAGC-----------TCCGT--------------------------------------------TG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010010
dm3
TGGC-CAGCATGGAGC-----------TCCGT--------------------------------------------TGCGGTTGCCGGTTTGTCG----------TTT--------A--------GAGAGA------GGCA-----AGACG--A---------CT---------AG------C---TAGGAG--A---GACT--CTCCA--------------------------------------------C-------CAAACTTTTATGTTTATGGTTGTTCTTTT--TGGTG---------------------------TTGTCGGTGTCGTTGTCGCAATCG--CAGCCGTTTTTAGACCCGCGT---------CACATTCG-------------------------------------TTGT------CAATT-T-----TGGGTTTCCATTGTTGTTGGTG---------------------------------------------------------------------------CAGATTTCTGACT------------------------CGGCGAGTGTGCGT-------------GCATTGCTCAAA--------G---CGA--------------ACG------------------GC----G---ATCGSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
..GC-CAGCATGGAGC-----------TCCGT--------------------------------------------T...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1917.0070000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000220000000000000001000000000000000000000000
.................................................................................................................................GA------GGCA-----AGACG--A---------CT---------AG------C---TAGGAG--A---GAC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2717.0070000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007
..GC-CAGCATGGAGC-----------TCCGT--------------------------------------------TG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2017.0070000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000010000000001000001000000001000100000000000
..GC-CAGCATGGAGC-----------TCCGT--------------------------------------------................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1815.0050000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000101000000000000100000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATTGTTGTTGGTG---------------------------------------------------------------------------CAGATTTCTGAC................................................................................................................................2614.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100300000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................CGTTGTCGCAATCG--CACG..........................................................................................................................................................................................................................................................................................................................................1863.67220000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002170000000000000000040000000000000000000000000000233000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....CAGCATGGAGC-----------TCCGT--------------------------------------------TG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1813.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001100000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................TT-T-----TGGGTTTCCATTGTTGTT...........................................................................................................................................................................................................................2113.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTGACT------------------------CGGCGAGTGTGT...........................................................................................1912.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000
..............................GT--------------------------------------------TGCGGTTGCCGGTTTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1812.0020000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTCTGACT------------------------CGGCGAGTGTGC...........................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..GC-CAGCATGGAGC-----------TCCGT--------------------------------------------TGC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000100000000000
.........................................................................................................................................................................................................................................................................................TGTTCTTTT--TGGTG---------------------------TTGTC...................................................................................................................................................................................................................................................................................................................................................................1912.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...C-CAGCATGGAGC-----------TCCGT--------------------------------------------TG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1912.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......GCATGGAGC-----------TCCGT--------------------------------------------TGCGGTT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................CCGGTTTGTCG----------TTT--------A--------GAGAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2012.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000
...................................................................................................................................................GACG--A---------CT---------AG------C---TAGGAG--A---GACT--CTCC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
....................................................................................................................................................................................................................................................................................................TGGTG---------------------------TTGTCGGTGTCG............................................................................................................................................................................................................................................................................................................................................................1711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........CATGGAGC-----------TCCGT--------------------------------------------TGCGGTTGCCGGTT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000
.GGC-CAGCATGGAGC-----------TCCG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................TTT--TGGTG---------------------------TTGTCGGTGTCGTTGT........................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000
.........................................................................................................................................................................................................................................................................................TGTTCTTTT--TGGTG---------------------------TTGTCGGTG...............................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
TGGC-CAGCATGGAGC-----------TCCGT--------------------------------------------TGC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................TCTTTT--TGGTG---------------------------TTGTCGGTGT..............................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TG---------------------------------------------------------------------------CAGATTTCTGACT------------------------CGGCGAGTGTG............................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTCCATTGTTGTTGGTG---------------------------------------------------------------------------CAGATT......................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........ATGGAGC-----------TCCGT--------------------------------------------TGCGGTTGCC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTGACT------------------------CGGCGAGTGTGCGT-------------............................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000
........................................................................................................................................................................................................................................................................................................................................CGGTGTCGTTGTCGCAATCG--C.............................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................GCA-----AGACG--A---------CT---------AG------C---TAGGAG--A---......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000
.........................................................................................................................................................A---------CT---------AG------C---TAGGAG--A---GACT--CTCCA--------------------------------------------C-------CAAAC..................................................................................................................................................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGAGTGTGCGT-------------GCATTGCT....................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGACT------------------------CGGCGAGTGTGCGT-------------GC..........................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACT------------------------CGGCGAGTGTGCGT-------------G...........................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000
..........................................................................................TGTCG----------TTT--------A--------GAGAGA------GGC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......AGCATGGAGC-----------TCCGT--------------------------------------------TGCGGTTGCC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000
........CATGGAGC-----------TCCGT--------------------------------------------TGCGGTTGCC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000
....................................................................................................................................................................................................................................................................................ATGGTTGTTCTTTT--TGGTG---------------------------TTG.....................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................TTTT--TGGTG---------------------------TTGTCGGTGTC.............................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000
....................................................................................................................................................ACG--A---------CT---------AG------C---TAGGAG--A---GACT--C...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................GCA-----AGACG--A---------CT---------AG------C---TAGGAG--..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000
.........................................................................................................................................................A---------CT---------AG------C---TAGGAG--A---GACT--C...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
..........TGGAGC-----------TCCGT--------------------------------------------TGCGGTTGCCGG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000
.......................................................................................................................................................................................................................................................................................GTTGTTCTTTT--TGGTG---------------------------TTG.....................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................CG----------TTT--------A--------GAGAGA------GGCA-----AGA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................TT--TGGTG---------------------------TTGTCGGTGTCG............................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000
....................................................................................................................................................................T---------AG------C---TAGGAG--A---GACT--CTC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCATTGTTGTTGGTG---------------------------------------------------------------------------CAGATTTCTGAC................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGGTTTCCATTGTTGTTGGT........................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................AGA------GGCA-----AGACG--A---------CT---------AG------C---TAGG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACT------------------------CGGCGAGTGTGCGT-------------GCATT.......................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGAGTGTGCGT-------------GCATTGCTCA..................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................GCCGGTTTGTCG----------TTT--------A--------GG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T------------------------CGGCGAGTGTGCGT-------------GCATTGCTCA..................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTGACT------------------------CGGCGAGTGTGCGT-------------GCATTGC.....................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
..............................................................................................................................................................................................................................................................................................TTTT--TGGTG---------------------------TTGTCGGTGTCGTTGTC.......................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
.....................................................................................................................................................CG--A---------CT---------AG------C---TAGGAG--A---GACT--C...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTTCTGACT------------------------CGGCGAGTGTGCG..........................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000
...................................................................................GCCGGTTTGTCG----------TTT--------A--------GAGA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.GGC-CAGCATGGAGC-----------TCCGT--------------------------------------------TG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................CACATTCG-------------------------------------TTGT------CAATT-T-----TGGGT........................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GT-------------GCATTGCTCAAA--------G---CGA--------------ACG------------------G.............2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................AGACG--A---------CT---------AG------C---TAGGAG--A---GATC--................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droEre2
TGGC-CAGCATGGAGC-----------GTCGT--------------------------------------------TGCGGTTGCCCGTTTGTCG----------TTT--------A--------GAGAGA------GGCA-----AG-----A---------CT---------AG------C---TGGGAG--A---GACT--CTCCA--------------------------------------------C-------CAGACTTTTATGTTTATGGTTGTTCTTTT--TGGTG---------------------------TTGTCTGTGTCGTTGTCGCAATCG--CAGCCGTTTTTAGACCCGCGT---------CACATTCG-------------------------------------TTGT------CAATT-T-----TGGGCTCCCATTGTTGTTGGTT---------------------------------------------------------------------------TAGATTTGTGAGT------------------------CGGCGAGTGTGCGT-------------GCATTGCTCAAA--------G---CGA--------------ACG------------------GC----G---ATCGSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
.......................................................................................GTTTGTCG----------TTT--------A--------GAGAGA------G..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010001000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................T-T-----TGGGCTCCCATTGTTGTTGGT........................................................................................................................................................................................................................2311.0010001000
droYak3
TGGC-CAGCATGGAGC-----------TCCGT--------------------------------------------TGCGGTTGCCGGTTTGTCG----------TTT--------A--------AAGAGA------GGCA-----AG-----A---------GT---------AG------C---TGGGAG--A---GACT--CTCCA--------------------------------------------C-------CAGACTTTTATGTTTATGGTTGTTCTTTT--TGGTG---------------------------------TTGTCGTTGTCGCAATCG--CAGCCGTTTTTAGACCCGCGT---------CACATTCG-------------------------------------TTGT------CAATT-T-----TGGGTTTCCATTGTTGTTGGTT---------------------------------------------------------------------------TGGATTTGTGACT------------------------CGCCGAGTGTGCGT-------------GCAC-ACTCAAA--------G---CGA--------------ACG------------------GTGATCGGTGATCGSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
..................................................................................TGCCGGTTTGTCG----------TTT--------A--------AAGAGA------GG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2519.00900000000009
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCATTGTTGTTGGTT---------------------------------------------------------------------------TGGATTTGTGAC................................................................................................................................2819.00900000000009
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTT---------------------------------------------------------------------------TGGATTTGTGACT------------------------CGCCGAGT...............................................................................................2512.00200000020000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTGCGT-------------GCAC-ACTCAAA--------G---CGA--------------ACG------------------G.............2611.00101000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTTGTGACT------------------------CGCCGAGT...............................................................................................1911.00100100000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGTT---------------------------------------------------------------------------TGGATTTGTGACT------------------------CGCCGAGTG..............................................................................................2711.00101000000000
..................................................................................................................................................AG-----A---------GT---------AG------C---TGGGAG--A---GACT--CTCCA--------------------------------------------C-------C......................................................................................................................................................................................................................................................................................................................................................................................................................................2611.00101000000000
............................................................................................................................................................................................................................................................................TTATGTTTATGGTTGTTCTTTT--TGGT....................................................................................................................................................................................................................................................................................................................................................................................................2611.00101000000000
............................................................................................TCG----------TTT--------A--------AAGAGA------GGCA-----AG-----A---------GT---------AG------C---T.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.00100000010000
.................................................................................................................................................................................................................................................................................................T--TGGTG---------------------------------TTGTCGTTGTCGCAATCG--C.............................................................................................................................................................................................................................................................................................................................................2511.00100000010000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCGT-------------GCAC-ACTCAAA--------G---CGA--------------ACG------------------GTGA..........2711.00101000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCAAA--------G---CGA--------------ACG------------------GTGATCGGC.....2211.00100100000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAC-ACTCAAA--------G---CGA--------------ACG------------------GTGATCGG......2511.00101000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GT-------------GCAC-ACTCAAA--------G---CGA--------------ACG------------------GTGATC........2611.00101000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCATTGTTGTTGGTT---------------------------------------------------------------------------TGGAT.......................................................................................................................................2111.00100100000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGTT---------------------------------------------------------------------------TGGATTTGTGACT------------------------CGCCGAGT...............................................................................................2611.00100000010000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................TGT------CAATT-T-----TGGGTTTCCATTGTTG.............................................................................................................................................................................................................................2511.00101000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGATTTGTGACT------------------------CGCCGAGTGTGCG..........................................................................................2611.00101000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGATTTGTGACT------------------------CGCCGAGTGTGC...........................................................................................2511.00101000000000
.....CAGCATGGAGC-----------TCCGT--------------------------------------------TGCGGT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.00100000010000
.........................................................................................................................................................................................................T--CTCCA--------------------------------------------C-------CAGACTTTTATGTTTATGG....................................................................................................................................................................................................................................................................................................................................................................................................................2611.00101000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CT------------------------CGCCGAGTGTGCGT-------------GCAC-ACTCAAA--------G---C...................................................2911.00100100000000
.................................................................................................................................................................................................................................................................................................................................................................................GT---------CACATTCG-------------------------------------TTGT------CAATT-T-----TGGGT........................................................................................................................................................................................................................................2511.00100000010000
...........................................................................................................T--------A--------AAGAGA------GGCA-----AG-----A---------GT---------AG------C---TGGGAG--..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.00101000000000
.................................................................................................................................................................................................................................................................................................T--TGGTG---------------------------------TTGTCGTTGTCGCAATCG--CA............................................................................................................................................................................................................................................................................................................................................2611.00100000000001
.........................................................................................................TTT--------A--------AAGAGA------GGCA-----AG-----A---------GT---------AG------C---TGGGA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.00101000000000
droEug1
TGGC-CAGCATGGAGC-----------TGCCT--------------------------------------------TGCGGTCGCCGGTTTGTCG----------TTT--------A--------AAAAGAGA----GAGA-----GGAAG--G---------CT---------AG------C---TGAGAG--A---GACT--CTCCG--------------------------------------------C-------CAGACTTTTATGTTGATGGTTGTTCTTGT--TGGCT---------------------------------TTGTCGTTGTCGCAATCG--CAGCCGTTTTTAGACTCCGGC---------CAGCGTCG-------------------------------------TTGT------CAATT-T-----TGGGTTTCGATTGTTGTCGGAT---------------------------------------------------------------------------TGGATTTGTGAGT--------------CGG---CGCTCGGCGAGTGTGCGT-------------GCATTGCCCAAAA-------G---CGA--------------ACG------------------GC----G---ATCGSizeHit CountTotal NormTotal
No Reads
droBia1
TGGC-CAGCATGGAGC-----------TGCGC--------------------------------------------TGCGGTGGCCGGTTCGTCG----------ACT--------AGTCGGTTGGAGAGC------GGGA-----AGACA--G---------CT-----------------C---TGCGAG--A---GTCT--CTCCA--------------------------------------------T-------CAGGCTTTTATGTTTATGGTTGTTCTTTT--TGCTG---------------------------TTGTCGCTGGCGTTGTCGCAATCG--CAGCCGTTTTTAGACCCGCGT---------CACATTCG-------------------------------------TAGT------CGATT-T-----TGGGCTTCGATTGTTGTTGGCTC----------------------------------------GGAT------------------------------TGGATTTGTGACT------------------------CGGCGAGTGTGCGT-------------GCACTGCCCAAAC-------G---CGA--------------ACG------------------GT----G---ATCGSizeHit CountTotal NormTotal
No Reads
droTak1
TGGC-CAGCATGGAGC-----------TGCCT--------------------------------------------TGCGGTTGCCGGTTTGTCG----------TTT--------A--------GAGAGA------GCAA-----AGACAACA---------AC---------AA------C---CGGGAG--A---GTCT--CTCCA--------------------------------------------T-------CAGGCTTTTATGTTTATGGTTGTTCTTTT--TCTTTTT--------------------T--GGTTGCCGTTGTCGTTGTCGCAATCG--CAGCCGTTTTTAGACCCGCGT---------CACATTCG-------------------------------------TTGT------CAATT-T-----TGGGTTTCGATTGTTGTTGCTT---------------------------------------------------------------------------CGGATTTGTGACT------------------------CGACGAGTGTGCGT-------------GCATTGCCCAAAA-------C---CGA--------------ACG------------------GC----G---ATCGSizeHit CountTotal NormTotal
No Reads
droEle1
TGGC-CAGCATGGAGC-----------TGCGT--------------------------------------------TGCGGTTGCCGGTTTGTCG----------TTT--------A--------AAGAGA------GA-A-----AA-----A---------CA---------AA------C---TGGGAG--A---GTCT--CTCCA--------------------------------------------T-------CAGGCTTTTATGTTTATGGTTGTTCTTTT--TGGTG---------------------------------TTGTCGTTGTCGCAATCG--CAGCCGTTTTTAGACCCGCGC---------CAGCGTCG-------------------------------------TTGT------CACTT-T-----TTTGTTTCGAATGTTGTTGGCTG--------------------------------------------------------------------------TGGATTTGTGACT------------------------CGGCAAGTGTGCGT-------------GCATTGCCCAAA--------G---CGA--------------ACG------------------GC----G---ATCGSizeHit CountTotal NormTotal
No Reads
droRho1
TGGG-CAGAATGGAGC-----------TGCGT--------------------------------------------TGCGGTTGCCGGTTTGTCG----------TTT--------A--------AAGAGA------GA-A-----AGA-------------------------AA------C---TGGGAG--A---GTCT--CTCCA--------------------------------------------T-------CAGGCTTTTATGTTTATGGTTGTTCTTTT--TGGTG---------------------------TTGTCGTTGTCGTTGTCGCAATCG--CAGCCGTTTTTAGACCCGCGC---------CAGCGTCG-------------------------------------TTGT------CACTT-T-----TTTGTTTCGATTGTTGTTGGTT---------------------------------------------------------------------------TGGATTTGTGACT------------------------CGGCGAGTGTGCGT-------------GCATTGCCAAAA--------G---CGA--------------ACG------------------GC----G---ATCGSizeHit CountTotal NormTotal
No Reads
droFic1
TGCC-CAGCATGGAGC-----------TGCGT--------------------------------------------TGCGGTTGCCGGTTTGTCG----------CTT--------A--------AAGAGA------GGAA-----AG-----A---------TT---------AA------C---TGGGAG--A---GTCT--CTCCA--------------------------------------------T-------CGGTCTTTTATGTTTATGGTTGTTCTTTT--TGGTGTTGCCATTGCCGCTG-------C--CGTTGTCGTTGTCGTTGTCGCAATCA--CAGCCGTTTTTAGACCCGCGC---------CAGCGTCG-------------------------------------CTGT------CAATT-T-----TGGGCTTCGATTGTTGTTGGAT---------------------------------------------------------------------------TGGCTTTGTGACT------------------------CGACGAGTGTGCGT-------------GCATGGCCCAAA--------G---CG---------------ACG------------------GC----G---ATCGSizeHit CountTotal NormTotal
No Reads
droKik1
TGGC-CAGCATGGAGC-----------GGCAC--------------------------------------------TGCGGTTGCCC--CTGCCG--------GGTCT--------A---------AGAGA------GA--------------------------------------------------GAG--AGCGGTCT--CTCCA--------------------------------------------T-------CG-------TTGTTTACGGCTGTTCTTTTGTCGTTG---------------------------TCGCCGCTGTCGTTGTCGCAATCA--CAGACGTTTTTAGACA-GCGC---------CGCTGCCT-------------------------------------TCGT------CAGTTTT-----TGGGTTCCGATTGTTGTGGACT---------------------------------------------------------------------------CGGAGTCG-GATTCGAATTCGGA--TTCAG---ATT-TTGCGAGTGTGCGT-------------GGATTGCATAAA--------G---AGA-----A-TTCG---GCG------------------GC----GATCATCGSizeHit CountTotal NormTotal
No Reads
droAna3
TGGC-CAGTATGGAGC-----------TGCCC--------------------------------------------TGCTGTGGCGGGTTTGTCG----------TCT-----GCTAGTC-----GAGAGA------GAGG-----AG-----A---------AT---------GG------G---CCGGAG--A---GTCT--ACTCG--------------------------------------------G-------CGGACGTTGTTGCTTGCGGTGGTTCTTTT--TGGCG---------------------------------TTGTCGTTGCCGCAATCG--CAGCCGTTTTTAGACC-GCGCC---GTCGTCGGCGTCG-------------------------------------TTGT------CACTT-T-----CGGATCTCGATTGTTGTGGACT---------------------------------------------------------------------------TTTGTTGGCTGTT------------------------C----------TTT-------------ACTTTGTATTAA--------T---TCG--------------ACG------------------GC----A---ATCGSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
.........................................................................................................................................................................................................................................................................................GGTTCTTTT--TGGCG---------------------------------TTGTCGTTGCC.......................................................................................................................................................................................................................................................................................................................................................2512.002020000
.............................................................................................CG----------TCT-----GCTAGTC-----GAGAGA------GA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2012.002002000
........................................................................................................................................................................................................................................................................................................................................................ATCG--CAGCCGTTTTTAGACC-.............................................................................................................................................................................................................................................................................................................................2012.002020000
........................................................................................................................................................................................................CT--ACTCG--------------------------------------------G-------CGGACGTTGTTG...........................................................................................................................................................................................................................................................................................................................................................................................................................2011.001100000
......AGTATGGAGC-----------TGCCC--------------------------------------------TGCTGTGGCGGG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.001010000
.................................................................................................................................GA------GAGG-----AG-----A---------AT---------GG------G---CCGGAG--A---GT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001000010
...........................................................................................................................................................................................................................................................................................................................................TGTCGTTGCCGCAATCG--CAGCC.........................................................................................................................................................................................................................................................................................................................................2211.001001000
..................................................................................................................................................................................................................................................................................................................................................................................................CG-------------------------------------TTGT------CACTT-T-----CGGATCT......................................................................................................................................................................................................................................1911.001010000
..........................................................................................................................................................................................................................................................................GTTGTTGCTTGCGGTGGTT...............................................................................................................................................................................................................................................................................................................................................................................................................1911.001010000
.................................................................................................................................GA------GAGG-----AG-----A---------AT---------GG------G---CCGGAG--A---GTC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.001010000
..........................................................................................TGTCG----------TCT-----GCTAGTC-----GAGAGA------...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001010000
..........................................................................................................CT-----GCTAGTC-----GAGAGA------GAGG-----AG-----...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001010000
.......GTATGGAGC-----------TGCCC--------------------------------------------TGCTG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001001000
........................................................................................TTTGTCG----------TCT-----GCTAGTC-----GAGA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000010
.......................................................................................................................................................................................................................................................................................GTGGTTCTTTT--TGGCG---------------------------------TTGT..............................................................................................................................................................................................................................................................................................................................................................2011.001010000
.........................................................................................................................................................A---------AT---------GG------G---CCGGAG--A---GTCT--ACTCG--------------------------------------------G-------CGGAC..................................................................................................................................................................................................................................................................................................................................................................................................................................2811.001010000
droBip1
TGGC-CAGCATAGAGC-----------TGCGC--------------------------------------------TGCTGTGGCGGTTGTGTCG----------TCT-----GCTAGCCG-CGAGAGAGA------GCGG-----AG-----A---------AT---------GG------T---CCGGAG--A---GTCT--ACTCG-------------------------------------------------------------------GCGGTGGTTCTTTT--TGGCG---------------------------------TTGTCGTTGCCGCAATCG--CAGCCGTTTTTAGACC-GCACCAGCGTCGTCAGCGTCG-------------------------------------TTGT------CACTT-CACAGATCTTTTCGGATTGTTGTGAACTG--------------------------------------------------------------------------TTTGTTCTTTACT-----------------------------------TTT-------------GTATT-----AA--------T---TCA--------------ACG------------------GC----A---ATCGSizeHit CountTotal NormTotal
No Reads
dp5
TGGC-CAGCATGGAGC-----------TGCT-------GCC-TTCTCGCGGTCTCCGTCGTTGTTGTGGTTGTCGTTGCGGTTGCCGGTTTGTCG----------TTT-----ACTA--------AAGTGA------GA-G-----AG-----A---------GA---------GA-----------GAGAGAGA---G-CT--GCCTG--------CC-------------------TGTCTGTCTGTCTGTCCGTCGATCGGTCGTTGTTG--TATGGTTGTTCTTTT--TGGGG---------------------------C--TCGTTGTCGTTGTCGCAATCG--CAGCCGTTTTTAGACCTACGC------CGTCAACGTCGCAC------------------GTCGCG--TCGTCGTTTTGT------CATTT-T-----TGAA-TCCGATTGTTGTTGATTTTACTCGTATGCTTTGTTGTTGTTTTATTTTTTGGTGCTGCTTTG------------------------------CGTGCTCGTGTGC------------------------GTGTGCGTGTGCGTGAGTGTATTCTGTGCCTTGCATAAAAGGCCGAAC---CGA--------------ACAGA----------------GC----G---ATCGSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAGTGTATTCTGTGCCT........................................................................1912.0020000200000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAAAAGGCCGAAC---CGA--------------ACAGA----------------GC----G---....2411.0010000000010
..........................................................................................................................................................................................................................................................................................................................................................................................................................................TGT------CATTT-T-----TGAA-TCCGATTGTTGT............................................................................................................................................................................................................................2511.0010000000010
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCATAAAAGGCCGAAC---CGA--------------ACAGA----------------GC----........2711.0010010000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAAAAGGCCGAAC---CGA--------------ACAGA----------------GC----G---A...2511.0010000001000
..GC-CAGCATGGAGC-----------TGCT-------GCC-T.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010010000000
................................................CGGTCTCCGTCGTTGTTGTGGT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000100000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATTTTTTGGTGCTGCTTTG------------------------------CGTGCTC.....................................................................................................................................2711.0010000100000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTGT------CATTT-T-----TGAA-TCCGATTGT...............................................................................................................................................................................................................................2511.0010000000010
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................A-TCCGATTGTTGTTGATTT......................................................................................................................................................................................................................1911.0010000000001
droPer2
TGGC-CAGCATGGAGC-----------TGCT-------GCC-TTCTCGCGGTCTCCGTCGTTGTAGAGGTTGTAGTTGCGGTTGCCGGTTTGTCG----------TTT-----ACTA--------AAGTGAGAGAGAGA--------------------------------------------------GAG--AGCTGCCT--GTC-------------------------------TGTCTGTCTGTCTGTCCGTCCCTCGGTCGTTGTTG--TATGGTTGTTATTTT--TGGGG---------------------------C--TCGTTGTCGTTGTCGCAATCG--CAGCCGTTTTTAGACCTACGC------CGTCAACGTCGCAC------------------GTCGCG--TGGTCGTTTTGT------CATTT-T-----TGAA-TCAAAGTGTTGTTGATT---------------------------------------------------------------------------T-------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
.............................................................................................................................................................................................................................................................................................................................................................................CTACGC------CGTCAACGTCGCAC------------------GT.................................................................................................................................................................................................................................................................................2211.001100000
..........................................................................................................................................A--------------------------------------------------GAG--AGCTGCCT--GTC-------------------------------TGTC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001010000
............................................................................................................................................................................................................................................................................................................................................GTCGTTGTCGCAATCG--CAGCCG........................................................................................................................................................................................................................................................................................................................................2211.001001000
......................................GCC-TTCTCGCGGTCTCCG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.001100000
droWil2
TGGC-CGGCATGGAGC-----------GTTGT----CG-TAGTCGTTGCGGTTTCAGTCTTTGCC---TTTGCGTTTGCGTTTGCCGGTTTATCG----------TTT--------A--------G-------------------------------------------------C------C---CGCGAG--A---GAGTCTTCAAAGAGTTGTT------------------------------------------------TTTTTTTG-TTGTAGTTGTTGTTGT--TGTAG---TTGTTGTTGCTT-------A--TGATTCTGTTGAGGTTGTCGCAATCG--TAGCCGTTTTTAGACATACAA------CGTCAGCGTCAG-C------------------GTCGCGACTCGACGTTTTGTCGTTGTCAATT-T------GGATTTTGGTTTT-------A----------------------------------------TATAGTGTGTGTACACAAAAAAACACACTCACTTATAGAGGTGTGTGT--GTGT----GAGTGTGAGCAGCCCTGTGTGCGTATGC-------------GTATTGCATAAAAGTCCAAAATAGTGAGAAGAAATAACAACACA------------------AA----A---ATTGSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGGTTTT-------A----------------------------------------TATAGTGTGT.....................................................................................................................................................................1911.00100100
..................................................................................................................................................................................................................................................................................................................................................................................................CAG-C------------------GTCGCGACTCGACGTTTTGTCGTT...........................................................................................................................................................................................................................................................2811.00100010
...................................................................................................................................................................................................................................................................................................................................................................GTTTTTAGACATACAA------CGTCAGCGT..........................................................................................................................................................................................................................................................................................................2511.00100010
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTGCGTATGC-------------GTATTGC.....................................................................1911.00100010
...........................................................................................................................................................................................................................................................................................................................................................................................................................CGCGACTCGACGTTTTGTCGTT...........................................................................................................................................................................................................................................................2211.00100010
................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGATTTTGGTTTT-------A----------------------------------------TATAGTGT.......................................................................................................................................................................2211.00100010
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTTATAGAGGTGTGTGT--GT...........................................................................................................................2011.00100010
..............................................................................................G----------TTT--------A--------G-------------------------------------------------C------C---CGCGAG--A---GAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.00100010
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGCGTATGC-------------GTATTGCAT...................................................................1911.00100010
........................................................................................................................................................................................................GTCTTCAAAGAGTTGTT------------------------------------------------TTTTTTTG-TT........................................................................................................................................................................................................................................................................................................................................................................................................................2711.00100010
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAGTCCAAAATAGTGAGAAGAA...........................................2411.00101000
..............................................................................CGTTTGCCGGTTTATCG----------TTT--------A--------G-------------------------------------------------C------C---..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.00100010
..................................................................................................................................................................................................................................................................................................................................................................CGTTTTTAGACATACAA------CG.................................................................................................................................................................................................................................................................................................................1911.00100010
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GT----GAGTGTGAGCAGCCCT.....................................................................................................1811.00100100
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTTTT-------A----------------------------------------TATAGTGTGTGTA..................................................................................................................................................................2011.00100010
..............................................................................................................................................................................................................................................................................................................GTTGTTGCTT-------A--TGATTCTGTTGAGGT...........................................................................................................................................................................................................................................................................................................................................................2611.00100100
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCACTTATAGAGGTGTGTGT--.............................................................................................................................2111.00100100
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTATAGAGGTGTGTGT--GTGT----GAGT.................................................................................................................2411.00100100
............................................................TTGCC---TTTGCGTTTGCGTT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1920.50100010
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTGTGT--GTGT----GAGTGTGAGC...........................................................................................................2270.14101000
............................................................................................................................................................................................................................................................................TTTTG-TTGTAGTTGTTGTTGT--T.......................................................................................................................................................................................................................................................................................................................................................................................................22100.10100100
droVir3
TGGCCCGGCATGGTGCGTTGACGTT--TCTGCCGCG-------------------------------------------GTTTGCCGGTTT--CG----------TTA--------A--------GCGAGA---------AAGTCAAC-----AGCAACAAAAAT--------------CAACGCATCAAAA--A---GTTC------------GCTGCACTCCTCAAGCTCCTGTCCCCCCTCTCT--------------CG------CGCGTTCACA-TCGTTCC------------------------------------ATTATTGTCGTTGTTGTCGCAATCATATAGCCGTTTTTAGCCGT-CGC------TGTCGCCGTCGC-CGTCAGCGTCGACGTCAGCGTCT-GCGTCA--GCTTTGTCGCTGTCC-------------GTTTTGATTGTTGTG--------------------------------------------------------------------------------------------------------------------TGGTGTGTTTATTT-------------GTGTTGCT--------------------------------------------------------------------SizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
................................................................................................................................................................................................................................................................................................................................................................................................GTCGC-CGTCAGCGTCGACGTCAGC...................................................................................................................................................................................................................................................................................2412.002000200000000000000000000000000000000000000000000000000000000000
........CATGGTGCGTTGACGTT--TCTGCC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001000000000000000000000000000000000000000100000000000000000000000
...................GACGTT--TCTGCCGCG-------------------------------------------GTTTGCCGGTTT--...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.001000000000000000000000000000000000000000000000000000000000000100
TGGCCCGGCATGGTGCGTTGACGTT--T................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.001000000010000000000000000000000000000000000000000000000000000000
.......GCATGGTGCGTTGACGTT--TCTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001000000000000000000000000000000000000000000000000000000000001000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGTTGTG--------------------------------------------------------------------------------------------------------------------TGGTGTGTTTT............................................................................................2011.001000000000000000000000000000000000000000000000000000000000000010
.........................................................................................................TTA--------A--------GCGAGA---------AAGTCAAC-----AGCA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001000000000000001000000000000000000000000000000000000000000000000
.....CGGCATGGTGCGTTGACG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.001000000000000000000000000100000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................CCGT-CGC------TGTCGCCGTCGC-C.....................................................................................................................................................................................................................................................................................................2070.141001000000000000000000000000000000000000000000000000000000000000
droMoj3
TGGC-CGGCATGGTGCGTTGACGTCTCTGCGCCGCG-------------------------------------------GTTTGCCGGTTT--CG----------TTA--------A-CT-----GAGAAA------GTCA-----AC-----AATAACAACAACAACAAGAGCAGCGACAACGCATCACAA--A---GTTC------------GTTTCC---------------TTCTCCCTCTCTCCCTT-T-------TCGTTCTCTATCCTCATCGTTTTCTCGCT--TG-CG---------------CGCCATAT--AATTATTGTCGTTGTTGTCGCAATCATATAGCCGTTTTTAGACGT-CGC------TGTCAGCGTCGT-CGTCAACGTCAGCGTCAGCGTCG-GTGTCAGCG--TTCTCGCCGTCA-------------GTTTTGATTGTTGTAC-TT----------------------------------------TGTTG------------------------------TGTGTTTGTGTGT------------------------ATGTGTGCGTGCGT-------------GCGTTT---AAAATCCAAAAC---CCA--------------AGACAAATATATCGTATGGATAC----G---ATCGSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
..GC-CGGCATGGTGCGTTGAC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1912.002000020
................................................................................................................................................................................................................................................................................................................................................................................................GTCGT-CGTCAACGTCAGCGTCA.....................................................................................................................................................................................................................................................................................2211.001001000
...........GGTGCGTTGACGTCTCTG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.001001000
.GGC-CGGCATGGTGCGTTGACGTC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001000010
................................................................................................................................................................ACAACAACAAGAGCAGCGACAACGCATC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.001000010
..GC-CGGCATGGTGCGTTGACGTCTCTGC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.001000010
.................................................................................................................................................................................................................................................................................................................................................................................GC------TGTCAGCGTCGT-CGTCAACG..............................................................................................................................................................................................................................................................................................2211.001000001
......................GTCTCTGCGCCGCG-------------------------------------------GTTT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.001001000
............GTGCGTTGACGTCTCTGC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.001000010
droGri2
TGGC-CGGCATGGAGC----------------------------------------------------------------GTTGCCGGTTT--CGCTTGGCTTCGTTTCAAATTTTA--------GCGTGA------AACT-----TAGCA--A---------CA---------CA----------TC--AA--A---GTCC------------GTTCCA---------------TCGCATCTATCTCGCT-----------CGCTCTCACTGCCAATAC-------------G-CA---------------GACCATATAAAATTATTGTCGTTGTTGTCGCAATCATATAGCCGTTTTTAGACGT-CGT------CGTCAGCGTCAC-C------------------GTCA------------CCGT------CA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads

Generated: 05/19/2015 at 12:52 AM