ID:dsi_12874 |
Coordinate:3r:10061074-10061223 + |
Confidence:Candidate |
Type:Unknown |
[View on UCSC Genome Browser {Cornell Mirror}] |
| Legend: | mature | star | mismatch in read |
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| -26.6 | -26.5 | -26.4 |
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 |
five_prime_UTR [3r_10060969_10061047_+]; CDS [3r_10061048_10061073_+]; exon [3r_10060969_10061073_+]; Antisense to three_prime_UTR [3r_10061149_10061276_-]; Antisense to exon [3r_10061149_10062681_-]; intron [3r_10061074_10063448_+]
No Repeatable elements found
| ##################################################-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TTCGGCCCAGCTTGCTAACTCGCAATGAAATATTTTGGCGGAGTCGAAGGGTATGTACATACATAGAAAGGTCACCAATCGATTTGTAATTCAATAGCCAAACGCGATGATTAATGGACGTGATTAAGCGCAGGGTGTTATACCCTGATCTGCCAGATATCAGCTGCGAAAAGTGCTTCAAAATATTCCCCAGCTTTCGTTGATAAGCCCAACGATTTAATGATAACAGTCAAAGGTACAGAATGTGTTT **************************************************.(((((....)))))((((((((((...((.(((......(((...((.....))..)))..))).)).)))))......(((((((...)))))))..(((...(((((.(((.((.....))))).....)))))...))))))))..************************************************** |
Read size | # Mismatch | Hit Count | Total Norm | Total | M023 head |
SRR902009 testis |
SRR553485 Chicharo_3 day-old ovaries |
M024 male body |
SRR618934 dsim w501 ovaries |
SRR553486 Makindu_3 day-old ovaries |
|---|---|---|---|---|---|---|---|---|---|---|---|
| ..................................TTGGCGGAGTCGAAGGGTAT.................................................................................................................................................................................................... | 20 | 0 | 1 | 1.00 | 1 | 0 | 1 | 0 | 0 | 0 | 0 |
| ...................................................................................................AAACGCGATGATTAATGGACG.................................................................................................................................. | 21 | 0 | 1 | 1.00 | 1 | 1 | 0 | 0 | 0 | 0 | 0 |
| ....................................GGCGGAGTCGAAGGGTATGTAT................................................................................................................................................................................................ | 22 | 1 | 1 | 1.00 | 1 | 1 | 0 | 0 | 0 | 0 | 0 |
| ................AACTCGCAATGAAATATTTTGGCGGAGT.............................................................................................................................................................................................................. | 28 | 0 | 1 | 1.00 | 1 | 0 | 0 | 1 | 0 | 0 | 0 |
| ......................................................................................................CGTAATGATTAATGGACG.................................................................................................................................. | 18 | 2 | 8 | 0.75 | 6 | 1 | 0 | 0 | 5 | 0 | 0 |
| ...................................................................................................AAACGCGATGATTGGTGGACG.................................................................................................................................. | 21 | 2 | 2 | 0.50 | 1 | 1 | 0 | 0 | 0 | 0 | 0 |
| ....................................................................................................ATCGTAATGATTAATGGACG.................................................................................................................................. | 20 | 3 | 9 | 0.22 | 2 | 0 | 0 | 0 | 2 | 0 | 0 |
| ...........................................................................................AAATGGCCAAACGCGAGGATTAA........................................................................................................................................ | 23 | 3 | 6 | 0.17 | 1 | 0 | 1 | 0 | 0 | 0 | 0 |
| ...................................................................................................AAACGCGAAGACTAATAGAC................................................................................................................................... | 20 | 3 | 6 | 0.17 | 1 | 1 | 0 | 0 | 0 | 0 | 0 |
| ....................................................................................TGTAGTTCACTAGCAAAACG.................................................................................................................................................. | 20 | 3 | 7 | 0.14 | 1 | 0 | 0 | 0 | 0 | 1 | 0 |
| ............................................................................................................................................TACCCTGATCTGCTA............................................................................................... | 15 | 1 | 8 | 0.13 | 1 | 0 | 0 | 0 | 0 | 0 | 1 |
| ..............................................................................................................................................................................................................GCCCAACGGTTTAATGT........................... | 17 | 2 | 10 | 0.10 | 1 | 0 | 0 | 0 | 0 | 1 | 0 |
| -----------------------------------------------------------------------------------------------------------------------------############################################################################################################################# AAGCCGGGTCGAACGATTGAGCGTTACTTTATAAAACCGCCTCAGCTTCCCATACATGTATGTATCTTTCCAGTGGTTAGCTAAACATTAAGTTATCGGTTTGCGCTACTAATTACCTGCACTAATTCGCGTCCCACAATATGGGACTAGACGGTCTATAGTCGACGCTTTTCACGAAGTTTTATAAGGGGTCGAAAGCAACTATTCGGGTTGCTAAATTACTATTGTCAGTTTCCATGTCTTACACAAA **************************************************.(((((....)))))((((((((((...((.(((......(((...((.....))..)))..))).)).)))))......(((((((...)))))))..(((...(((((.(((.((.....))))).....)))))...))))))))..************************************************** |
Read size | # Mismatch | Hit Count | Total Norm | Total | SRR553486 Makindu_3 day-old ovaries |
M023 head |
SRR553487 NRT_0-2 hours eggs |
M024 male body |
M025 embryo |
SRR553485 Chicharo_3 day-old ovaries |
SRR902008 ovaries |
GSM343915 embryo |
SRR618934 dsim w501 ovaries |
SRR553488 RT_0-2 hours eggs |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ....................................................................TCCAGTGGTTAGCTAAACATT................................................................................................................................................................. | 21 | 0 | 1 | 2.00 | 2 | 0 | 1 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 |
| .............................................................................................................................................................................................................TCGGGTTGCTAAATTACTATTGTC..................... | 24 | 0 | 1 | 1.00 | 1 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 |
| ...............................................................................................................................................................................................................GGGTTGCTAAGTTACTATTGTC..................... | 22 | 1 | 1 | 1.00 | 1 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| ...................................................................................................................................................................................................................................TCAGTTTCCATGTCTTACA.... | 19 | 0 | 1 | 1.00 | 1 | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 0 |
| ........................................................................................................................................................................................................ACTATTCGGGTTGCTAAATT.............................. | 20 | 0 | 1 | 1.00 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 0 |
| ..........................................................................................................................................................................................................................TTACTATTGTCAGTTTCCATG........... | 21 | 0 | 1 | 1.00 | 1 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| .......................................................................................................................................................................................................AACTATTCGGGTTGCTAAATTACTAT......................... | 26 | 0 | 1 | 1.00 | 1 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| .....................................................................................................................................................................................................GCAACTATTCGGGTTGCTAAATTACT........................... | 26 | 0 | 1 | 1.00 | 1 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| ........................................................................................................................................................................................................................AATTACTATTGTCAGTTTCCATGTCT........ | 26 | 0 | 1 | 1.00 | 1 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| ..........................................................................................................................................................................................AGGGGTCGAAAGCAACTATTCGGGT....................................... | 25 | 0 | 1 | 1.00 | 1 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| .............................................................................................................................................CGGGACTAGACGGTCTATAGTCGGCGCTT................................................................................ | 29 | 2 | 1 | 1.00 | 1 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| ..............................................................................................................................................................................................................CGGGTTGCTAAATTACTATTGTCAGTT................. | 27 | 0 | 1 | 1.00 | 1 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| ....................................................................................................TTGCGCTACTAATTACCTGCACTAA............................................................................................................................. | 25 | 0 | 1 | 1.00 | 1 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| ...................................................................................................................................................................................................................................TCAGTTTCCATGTCTTACACA.. | 21 | 0 | 1 | 1.00 | 1 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| ................................................................................................................................................GACTAGACTGTCTATGGTCG...................................................................................... | 20 | 2 | 1 | 1.00 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 0 |
| .............................................................GTATCTTTCCAGTGGTTAGCTAAAC.................................................................................................................................................................... | 25 | 0 | 1 | 1.00 | 1 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| ..............................................................................................................................................................................................................CGGGTTGCTAAATTACTATTGTCAGT.................. | 26 | 0 | 1 | 1.00 | 1 | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 0 |
| ...................................................................................................................................................................................................................TGCTAAATTACTATTGTCAGTTTCCAT............ | 27 | 0 | 1 | 1.00 | 1 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| ...........................................................................................................................................................................................GGGGACGAAAGCAACCAT............................................. | 18 | 2 | 4 | 0.25 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 0 |
| ...................................ACCGCCTCACCTTCCC....................................................................................................................................................................................................... | 16 | 1 | 8 | 0.13 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 |
| .........CAAACCATTCAGCGTTACT.............................................................................................................................................................................................................................. | 19 | 3 | 17 | 0.06 | 1 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| ............................................................................................................................................ATGGGTCTAGACGGT............................................................................................... | 15 | 1 | 17 | 0.06 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 0 |
| ..........AAACCATTCAGCGTTACT.............................................................................................................................................................................................................................. | 18 | 3 | 20 | 0.05 | 1 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| .................................................................................................................................................................................................................................TGTCAGTCTCCATGTTTTT...... | 19 | 3 | 20 | 0.05 | 1 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Generated: 04/24/2015 at 10:24 AM