ID:

dsi_12871

 Coordinate:

2l:4372749-4372946 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

Flybase annnotation

intergenic

No Repeatable elements found

Sense Strand Reads

ACCCCACTTCACAGGCAATCCACTGCGTGCATGCGTCGAGAGGCCTTCAAGTATGACTTTGTCCTGGGATGGGCCGACTGGTTTGGAAAACCAATCATATACAACTCGGATTACTTAAAATGTTGCCTAAATTAAAGCTTTTCGATCTTATTCTTTGATGTCAGATTTGTCATCCAAACAAATCGGCCCAACTCCGTATACACCCTATAGATCAGAAGTATTGACCTAACTCCTACTTCCTCACATAGATATGTACCTACCCTTGCCCAAAGACCCTTGTAGACCGTCGCCTTGTGGC
**************************************************.((((....(((....(((((((((((...(((((((..((.((((..((((((...((((...((.(((.(((...........))).))).))....)))).))).)))..)))).))..)))))))...))))))))..)))....)))............((((((..((......)).))))))....)))).************************************************** 		Read size # Mismatch Hit Count Total Norm Total M024
male body		 M023
head
 M025
embryo
 M053
female body
 SRR553487
NRT_0-2 hours eggs
 SRR553486
Makindu_3 day-old ovaries
 SRR553485
Chicharo_3 day-old ovaries
 O001
Testis
 O002
Head
 SRR553488
RT_0-2 hours eggs
 SRR618934
dsim w501 ovaries
 SRR1275483
Male prepupae		 SRR1275487
Male larvae		 GSM343915
embryo
.................................................................................................................................................................................................................................................................................CTCTTGTAGACCGTCGCT....... 18 2 1 827.00 827 410 319 51 10 4 8 7 8 4 3 2 0 1 0
.................................................................................................................................................................................................................................................................................CTCTTGTAGACCGTCGCTT...... 19 2 1 434.00 434 243 143 17 20 0 3 0 1 5 1 0 1 0 0
.................................................................................................................................................................................................................................................................................CTCTTGTAGACCGTCGCC....... 18 1 1 120.00 120 59 57 4 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................................................................................................CTTGTAGACCGTCGCTTGCT... 20 3 5 99.80 499 309 136 26 12 4 2 0 4 0 5 0 0 0 1
..................................................................................................................................................................................................................................................................................TCTTGTAGACCGTCGCTT...... 18 2 2 39.50 79 39 35 2 3 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................................................................................................CTCTTGTAGACCGTCGCTTG..... 20 3 5 21.60 108 60 12 5 19 1 2 0 3 3 0 1 0 1 1
.................................................................................................................................................................................................................................................................................CTCTTGTAGACCGTCGC........ 17 1 1 14.00 14 0 0 0 0 10 1 2 0 0 0 1 0 0 0
...................................................................................................................................................................................................................................................................................CTTGTAGACCGTCGCTTG..... 18 2 4 11.25 45 29 13 0 2 0 0 0 0 1 0 0 0 0 0
.................................................................................................................................................................................................................................................................................CTCTTGTAGACCGTCGCG....... 18 2 2 9.00 18 9 7 2 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................................................................................................................................................TCTCTTGTAGACCGTCGCT....... 19 3 6 8.67 52 18 24 2 1 0 2 4 1 0 0 0 0 0 0
....................................................................................................................................................................................................................................................................................TTGTAGACCGTCGCTTGCT... 19 3 19 7.53 143 69 52 8 3 2 4 1 0 0 2 1 1 0 0
...................................................................................................................................................................................................................................................................................CTTGTAGACCGTCGC........ 15 0 1 7.00 7 0 0 0 0 5 1 0 0 0 1 0 0 0 0
................................................................................................................................................................................................................................................................................TCTCTTGTAGACCGTCGC........ 18 2 2 6.50 13 6 5 1 0 1 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................................................................................................TCTTGTAGACCGTCGC........ 16 1 2 6.00 12 0 0 0 0 11 0 0 0 0 1 0 0 0 0
.................................................................................................................................................................................................................................................................................CCCTTGTAGACCGTCGCTTGCT... 22 3 1 5.00 5 2 3 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................................................................................................................................................TCTCTTGTAGACCGTCGCC....... 19 2 1 5.00 5 2 3 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................................................................................................................................................TCTCTTGTAGACCGTCGCTT...... 20 3 3 4.67 14 7 2 2 2 0 0 0 0 0 0 0 1 0 0
...............................................................................................................................................................................................................................................................................GTCTCTTGTAGACCGTCGCT....... 20 3 4 4.50 18 7 7 0 1 2 0 0 1 0 0 0 0 0 0
...............................................................................................................................................................................................................................................................................GTCTCTTGTAGACCGTCGCTT...... 21 3 2 3.00 6 1 2 0 3 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................................................................................................CTCTTGTAGACCGTCGCTTTCT... 22 3 1 3.00 3 2 1 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................................................................................................CTTGTAGACCGTCGCT....... 16 1 1 3.00 3 0 0 0 0 0 0 3 0 0 0 0 0 0 0
...................................................................................................................................................................................................................................................................................CTTGTAGACCGTCGCCTGCT... 20 2 1 2.00 2 1 1 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................................................................................................CTCTTGTAGACCGTCG......... 16 1 1 2.00 2 0 0 0 0 0 1 0 0 0 1 0 0 0 0
.................................................................................................................................................................................................................................................................................CTCTTGTATACCGTCGCC....... 18 2 2 2.00 4 2 2 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................................................................................................TCTTGTAGACCGTCGCT....... 17 2 6 1.50 9 0 0 0 0 0 3 4 0 0 2 0 0 0 0
.................................................................................................................................................................................................................................................................................CTCTTGTAGACCGTC.......... 15 1 3 1.33 4 0 0 0 0 1 0 1 0 0 2 0 0 0 0
.....................................................................................................................................................................................................................................................................................TGTAGACCGTCGCTT...... 15 1 3 1.33 4 0 0 0 0 2 0 0 0 0 2 0 0 0 0
.................................................................................................................................................................................................................................................................................CTCTTGTAGACCGTCGCTC...... 19 3 7 1.29 9 4 3 2 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................ATCCTTTGTTGTCTGATTTGT................................................................................................................................ 21 3 7 1.14 8 5 0 0 0 3 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................................................................................................CCCTTGTAGACCGTCGCTT...... 19 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................................................................................AAAGACCCTTGTAGACCG............ 18 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................................................................................................CCCTTGTAGACCGTCGCTTGC.... 21 3 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................................................................................................TTGTAGACCGTCGCTT...... 16 1 2 1.00 2 0 0 0 0 1 1 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................................................................................................TCTTGTAGACCGTCGCCT...... 18 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................................................................................................CCCTTGTAGACCGTCGCT....... 18 1 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................................................................................................CTTGTAGACCGTCGCTTTCT... 20 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................................................................................AAAGACCCTTGTAGACCGTCGCCTTG.... 26 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................................................................................................CTCTTGTAGACCGTCGCCTGCT... 22 3 2 1.00 2 1 0 0 1 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................................................................................................CTCTTGTATACCGTCGCTT...... 19 3 7 1.00 7 4 3 0 0 0 0 0 0 0 0 0 0 0 0
.............................................TTCAAGTATGACTTTGTCCT......................................................................................................................................................................................................................................... 20 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................................................................................................CCCTTGTAGACCGTCGCC....... 18 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................................................................................................CCCTTGTAGACCGTCGCTTG..... 20 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................................................................................................CTCTTGTAGACCGTCGCTTGGT... 22 3 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................................................................................................CCCTTGTAGACCGTCGCCTTGTG.. 23 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................................................................................................CTCTTGTAGACCGTCGCTTGG.... 21 3 2 1.00 2 1 1 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................................................................................AAAGACCCTTGTAGACCGTC.......... 20 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................................................................................................TGCCCAAAGACCCTTGTAGACCGTCGC........ 27 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................................................................................................CCCTTGTATACCGTCGCT....... 18 2 3 0.67 2 0 2 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................................................................................................CTCTTGTAGACCTTCGCTT...... 19 3 11 0.64 7 5 2 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................................................................................................CTCTTGTAGACCGTCGCTG...... 19 3 5 0.60 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................................................................................................CTCTTGTAGACCGTCGCGTGG.... 21 3 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................................................................................................CCTTGTAGACCGTCGCTTGCT... 21 3 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................................................................................................AGGTCTCTTGTAGACCGTCGC........ 21 3 2 0.50 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0
.................................................................................................................................................................................................................................................................................CTCTTGTAGACCGTAGCC....... 18 2 2 0.50 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................ACCCTATAGATCCGAATTGTT............................................................................ 21 3 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................................................................................................CTCTTGTAGACCTTCGCC....... 18 2 4 0.50 2 1 1 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................................................................................................CTCTTGTAGACCTTCGCT....... 18 3 20 0.45 9 2 7 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................GGGATGGGCCGGCCGGT........................................................................................................................................................................................................................ 17 2 7 0.43 3 0 0 0 0 2 0 1 0 0 0 0 0 0 0
...................................................................................................................................................................................................................................................................................CTTGTAGACCGTCGCTTAC.... 19 3 7 0.43 3 2 1 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................................................................................................TTGTAGACCGTCGCT....... 15 1 5 0.40 2 0 0 0 0 0 1 1 0 0 0 0 0 0 0
................................................................................................................................................................................................................................................................................TCTCTTGTAGACCGTCGCG....... 19 3 10 0.40 4 3 1 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................ACCCTATAGATCCGAA................................................................................. 16 1 3 0.33 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0
.................................................................................................................................................................................................................................................................................CTCTTGTAGACCGTCGCCTGC.... 21 3 3 0.33 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................................................................................................................................................GCTCTTGTAGACCGTCGCTT...... 20 3 3 0.33 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................................................................................................AGTCTCTTGTAGACCGTCGCT....... 21 3 3 0.33 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................................................................................................CACTTGTAGACCGTCGCT....... 18 2 3 0.33 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................................................................................................CTCTTGTACACCGTCGCC....... 18 2 3 0.33 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................................................................................................CTCTTGTAGACCGTCCCTT...... 19 3 4 0.25 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................................................................................................AGGTCTCTTGTAGACCGTC.......... 19 3 4 0.25 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................................................................................................GTAGACCGTCGCTTTCT... 17 2 4 0.25 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................................................................................................TCTTGTAGACCGTCG......... 15 1 5 0.20 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................AGTCTTTGTTGTCTGATTTGT................................................................................................................................ 21 3 10 0.20 2 0 0 0 0 0 0 0 0 0 2 0 0 0 0
....................................................................................................................................................................................................................................................................................TTGTAGACCGTCGCTTGCTG.. 20 3 6 0.17 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................TCTTTGTTGTCTGATTTGT................................................................................................................................ 19 2 12 0.17 2 0 0 0 0 1 0 0 0 0 1 0 0 0 0
.................................................................................................................................................................................................................................................................................CTCTTGTAGACCGTCTCC....... 18 2 7 0.14 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................................................................................................CTCTTGCAGACCGTCGCC....... 18 2 7 0.14 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................................................................................................CCTAGTAGAACGTCGC........ 16 2 7 0.14 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0
................................................................................................................................................................................................................................................................................CCTCTTGTAGACCGTCGCT....... 19 3 7 0.14 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................................................................................................CTCTTGTAGACCGTCACTT...... 19 3 8 0.13 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................................................................................................TTGTAGACCGTCGCTTG..... 17 2 18 0.11 2 0 0 0 0 2 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................................................................................................CTCTTGTAGACCCTCGCTT...... 19 3 9 0.11 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................................................................................................CTCTTGTAGACCCTCGCT....... 18 3 20 0.10 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................................................................................................CTCTTGTAGACCGCCGCTT...... 19 3 11 0.09 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................................................................................................ATCTTGTAGACCGTCGCTT...... 19 3 15 0.07 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................................................................................................CTCTCGTAGACCGTCGCT....... 18 3 17 0.06 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................................................................................................CTCTTGTATACCGTCGCG....... 18 3 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................ATGCCTTTGTCCTGG....................................................................................................................................................................................................................................... 15 1 20 0.05 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................................................................................................TGTAGACCGTCGCTTG..... 16 2 20 0.05 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0
......................................................................................................................................................GTCTTTGTTGTCTGATTTGT................................................................................................................................ 20 3 20 0.05 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................................................................................................GCCTCGTAGACCGTCG......... 16 2 20 0.05 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0
......................................................................................................................................................TTCTTTGATGTCAAA..................................................................................................................................... 15 1 20 0.05 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................................................................................................TCTTTTAGACCGTCGCTT...... 18 3 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................................................................................................................................................TCTCTTGTAGACCCTCGC........ 18 3 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................................................................................................CCTAGTAGAACGTCGCG....... 17 3 20 0.05 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0
...........................TGCTTGCGTCGAGAGA............................................................................................................................................................................................................................................................... 16 2 20 0.05 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0
.................................................................................................................................................................................................................................................................................CTCTTGTAGACCGCCGCT....... 18 3 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................................................................................................................................................TCTCTTGTAGACCGTC.......... 16 2 20 0.05 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0

Anti-sense strand reads

TGGGGTGAAGTGTCCGTTAGGTGACGCACGTACGCAGCTCTCCGGAAGTTCATACTGAAACAGGACCCTACCCGGCTGACCAAACCTTTTGGTTAGTATATGTTGAGCCTAATGAATTTTACAACGGATTTAATTTCGAAAAGCTAGAATAAGAAACTACAGTCTAAACAGTAGGTTTGTTTAGCCGGGTTGAGGCATATGTGGGATATCTAGTCTTCATAACTGGATTGAGGATGAAGGAGTGTATCTATACATGGATGGGAACGGGTTTCTGGGAACATCTGGCAGCGGAACACCG
**************************************************.((((....(((....(((((((((((...(((((((..((.((((..((((((...((((...((.(((.(((...........))).))).))....)))).))).)))..)))).))..)))))))...))))))))..)))....)))............((((((..((......)).))))))....)))).************************************************** 		Read size # Mismatch Hit Count Total Norm Total GSM343915
embryo
 SRR618934
dsim w501 ovaries
 M025
embryo
 M024
male body		 SRR553487
NRT_0-2 hours eggs
 SRR553488
RT_0-2 hours eggs
 SRR553486
Makindu_3 day-old ovaries
 SRR902009
testis
....................................................................................................................................ATATCTAAAAGCTAGAATAA.................................................................................................................................................. 20 2 2 0.50 1 1 0 0 0 0 0 0 0
......GAAGTCTCGGTTAGGTGCC................................................................................................................................................................................................................................................................................. 19 3 20 0.25 5 0 0 3 2 0 0 0 0
...................................................GTACTGAAACAGGACC....................................................................................................................................................................................................................................... 16 1 5 0.20 1 0 1 0 0 0 0 0 0
................................................................................................................................................................................................................................................................TATGGGAACTGGCTTCTGG....................... 19 3 10 0.10 1 0 0 0 0 1 0 0 0
.................................................................................................................................................................................................................................................................ATGGGAACTGGCTTCTG........................ 17 2 11 0.09 1 0 0 0 0 0 1 0 0
.........................................................................................................................................................................AGTAGGTTTGTTCAG.................................................................................................................. 15 1 12 0.08 1 0 0 0 0 0 0 1 0
.........................................................................................................................................................................................................................................ATGAAGGAGGGTAAGTATA.............................................. 19 3 20 0.05 1 0 0 0 0 0 0 0 1

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim2 2l:4372699-4372996 - dsi_12871 ACCCCACTTCACAG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCAATCCACTGCGTGCATGCGTCGAGAGGCCTTCAAGTATGACTTTGTCCT------------GGGATGGGCCGACTGGTTTGGAAAACCAAT------C-----ATATACAACTC-----------------------GGATTACTT---AA--AATGT---------------------------------------------TGCCTA----------------------AATTAAA-------------GCTT---------TTCGATCTTATTCT--------TTGATG---T--CAGATT--------------------------------------------TGT-------------------------------------------CATCCAAACAAATCGGCCCAACTCCGTATACACCCTAT-AGA--TCAGAAGTATTGACCTAACTCCT----A--CT--TCCTCA----------------------------------CATAGATATGTACCTACCCTTGCCCAAAGACCCTTGTAGACCGTCGCCTTGTGGC---------------------
droSec2 scaffold_5:2623888-2624174 - ACCCCACTTCACAG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCAATCCACTGCGCGCATGCGTCGAGAGGCCTTCAAGTATGACTATGTCCT------------GGGGTGGGCCGACTTGTTTGGAAAAC----------------------AACTC-----------------------GGATTACTT---AA--AATTT---------------------------------------------TGCCTA----------------------AATTAAA-------------GCTT---------TTCGATCTTATTCT--------TTGATG---T--CAGATT--------------------------------------------TGT-------------------------------------------CATCCAAACAAATCGGCCCAACTCGTTATACACCCTAT-GGA--TCAGAAGTATTGAGCTAACTCCT----A--CC--TCCTAA----------------------------------AATAGATATGTACCTACCCTTGCCCAAAGACCCTTGTAGACCGTCGCCTTGTGGC---------------------
dm3 chr2L:4525355-4525653 - ACCCCACTTAACAG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCAATCCACTGCGCGCATGCGTCGAGAGGCCCTCAAGTATGACTTTGTCCT------------GGGATGGGTCGACTTGTTTGGAAAACCAAT------C-----ACATACAACTC-----------------------GCATTACTT---AA--ACTTT---------------------------------------------TTCCTA----------------------ACTTAAA-------------ACTT---------ATCGATCGTATTCT--------TTGATG---T--CAGATT--------------------------------------------TGT-------------------------------------------CATCCAAACAAATCGGCCCAACTCGTTATACACCATAT-AGA--TCAGAAGTATTGACCTAACTCCTA---A--CT--TATTCA----------------------------------CATAGATATGTACCTACCCCTGCCCAAAGACCCTTGTAGACCGTCGCCTTGTGGC---------------------
droEre2 scaffold_4929:4615655-4615949 - ACCTCACTTCACAG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCAATCCCCTGCGCGCATGCGTCGAGAGGCCCTCAAGTATGACTTTGTCCT------------GGGCTGGGTCGATTTGTTTGGAAAACGAAT------CGTTTTATCTTAAACTC-----------------------GGATTACTC---AGCTAATTT---------------------------------------------TGTCTA----------------------AATTATG-------------ACTT----------TGGTTCT--------------------------TAGCTTTGGT---TC---T--------------------AC----------TT-------------------------------------------CACCCAAAGAAATCGACCCAACTCGTTATACACCTTA-------TCAGGAGTCTTGAACTTAATGTT----A--CT--TCCCCT----------------------------------TATAGACATGTACCTTCCCCTGCCCAAAGACCCTTGTAGACCGTCGCCTTGTGGC---------------------
droYak3 2L:4553180-4553483 - ACCTCACTTCACAG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCAATCCACTGCGCGCATGCGTCGAGAGGCCCACAAGTATGACTTTGTCCT------------GGGTTGGGTCGACTTGTTTGGAGAACGAAT------CCCAATGTTTTAGACTC-----------------------GGATTACTC---AACTAATTT---------------------------------------------TGCATG----------------------AATTTTA-------------GCTT----------TGGTTCTTATTTT--------TTGATG---A--CAGATT--------------------------------------------TGT-------------------------------------------CATCCAAACAAATCGACCCAGCTCGTTGTACACCTTAT-AGA--TCAGGAGTCTTTACCTAAATGCT----A--CT--TCCCCT----------------------------------TATAGACATGTACCTTCCCCTGCCCAAAGACCCTTGTAGACCGTCGCCTTGTGGC---------------------
droEug1 scf7180000409005:410881-411225 - ACCAGATTTCACCG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCAATCCGCTGCGAGCATGCGTCAAGAGACCTTCAAGTATGACTTTGTCCT------------GGGGTGGGTCGACTTGAAGAGAACACGAAT------TG-----TAGTTACTTTATAATCTTTATTCTCTAAAAGTTGGT------------------TTTA----------------------------AGGCTGAAATAATTTCTTAAAATAGGAAAAACTGAACTGTAATCTATGAGTTCAGATC----------------------------TC--------GTT---CGTCTTCTCTGG---A-----------------------------------------TT-------------------------------------------CCACCAATCAAATCGACCCACCTCTCAG--CAACCTTT-AGA--CCAGAATTCTTGATCTAACTGTTTTGC-CC-T--CCTCCT----------------------------------CATAGATATGTACCTGCCCCTGCCAAAAGACCCTTGTAGACCCTCTCCTTGTGGC---------------------
droBia1 scf7180000302188:1085790-1086112 - GCCGGGTTTCACCG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCAATCCACTGCGCGCATGCGTCGAAAGGCCCTCAAGTATGACTCTATCCT------------GGGGTGGGTCGATTTGTGAGAGATAG-TCT------AG------------------------------------------------TTCA--TGTATCCAATTGAGTCTAATAATTAAGTTATTCAACAGTAATGAT-----------AAACAGAAAA----------------------TCAAATCCCAAATTCGTTGACTA-GAG-TCC--------------TCA--------T---CTCCGGT--------------------------------------------------------------------------------------------GTCAAATCGACCCGCCCTCTTATACCCCGCCTCG-GT-CCAGAATCCTTCATCTAACTGCTCTAT-CC-T-CTCCCCC----------------------------------TATAGATATGTACCTACCCCTACCCAAAGACCCTTGTAGACCCTCGCCTTGTGGC---------------------
droTak1 scf7180000415264:636184-636410 - AAAAAAA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AC------T-----ATTTAGAAATT-----------------------TATCTACTT---AG--AATTT---------------------------------------------TGAAGA----------------------AATTCCA-------------ATTTGA--AATAT-AAG-TTT--------------CCA--------T---TCCTGTT-----GCCCCAAT-----------------TTGCT-----TGG-------------------------------------------CATCCGAATAAATCGACCCACCCTTTCATACACTCCTC-CGT--CCAGCGTTCTTGATCTAACTGCTCTGC-CC-T-TCCTCCC----------------------------------CATAGATATGTACCTACCCCTGCCCAAAGACCCTTGTAGACCCTCGCCTTGTGGC---------------------
droEle1 scf7180000491046:2172015-2172292 - ATCCGGATTCACTG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCAATCCCTCTCAATACTGCCGGGAGATACCTAGATGTAGGATATTATTTCAC-------AT-AGGATGGGTCGAGGCTTACGGAAACGATGT------CATTAGTTATCAAAGAT-----------------------AGAAT---CGTTGA--AGTGATCCA-----------------------------------------------------------------------------------------------------------GAGAATTTC--------TTG---CGCTTTCAGTCG------------------------------------------------------------------------------------------AGTCCCTAAAAATCGACCCACTCTATAGTAATCCCAAT-TTT--CCGG----------ATAGCTCTTA---T--AA--CGATCACCCTGA-------------------------------CTTTTAG----TGACCGCACCTGTTGAACCGTGTCGTCCTTCGCCATGCGGT---------------------
droRho1 scf7180000777227:322650-322932 - ACCGGACTTCACCG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCAATCCACTGCGCGCTTGCGTCGAAAGACCCTCAAGTATGACCCTATCCT------------GGGGTGGGTCGAATTGTATAGGAGAATAGT------AGC-------TAGAGTT-----------------------GGA---CTGAATTA--ATTTATTTA----------------------------AGGATGAA---------------------------------------------------------------------------ACATTCTTAGTCTACG------------------------------------------------------------TT-------------------------------------------CTTACAAACAAATCGGCCCACCCTTTTATACACCCTTT-AGA--CAAGAAGTATTGATCTAACTGCTATGA-CC-T--TTCCCA----------------------------------CATAGATATGTACCTGCCCCTGCCCAAAGACCCTTGTAGACCCTCGCCTTGTGGC---------------------
droFic1 scf7180000454155:9320-9598 + GCCTGGTTTCACCG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCAATCCACTGCGCGCATGCGTCGAGAGGCCTTCAAGTATGACTCTGTCCT------------TGGGTGGGTCGACTTGTATAAAGAAAGGAT------TGCTA--------TGTT-----------------------GAG---CTTAATAG--AACTTTCAA----------------------------ATGACGAT-----------AAATAAGAAA-------------------------AAGC-------------------------------CTATTCCCC--------------------------------------------------------------T-------------------------------------------TCTCTAAGCAAATCGATCCACCCTTTTCT-TACCTCTC-AGA--C--------CCGACCTAATTGCCTTGT-CC-C--ACCCCA----------------------------------CATAGATATGTACCTGCCCCTGCCGAAAGACCCTTGTAGACCCTCGCCTTGTGGC---------------------
droKik1 scf7180000302472:3199046-3199330 - GCCAGGCTTCACTG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCAATCCCTTGCGGGCCTGTGTCGAGAGACCATCAAGTATGACTCTTTAGACC--------AAGGGAGGGATTGATCTGTAGGGAACTA-TGT------CC------------------------------------------------TTTC--TATATCCA-T----------------------------------------TGAGTA----------------------AATCCAT-------------CTTT---------CGTGTCTTGAGTCC--------TTGAAG---T--CT------TTAAAA--------------------------A----------TT-------------------------------------------CTTCCCCGCATATCAATCCCCCCCTC-------------T-TTCTATGGAGTTCCCATTTAATTGCTCCTT-CC-TTTCCCCTT----------------------------------CCTAGATATGTATCTGCCCCTGCCCCATGATCCATGTAGACCCTCGCCTTGTGGC---------------------
droAna3 scaffold_12943:3314291-3314567 + TCCCGGCTTCACCG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCAATCCGCTGCGAGCCTGTGTGGAGAGACCTTCAAGTAGGAATTTAACCTCC-------CA-AGGGTGGTTCGATTTT--GGGTTAAAGAACCGCATATTC------GAAAAC--------------------------------TT---TA--AG-------------------------------------------------------------------------------TGGC-------------ATGT---------ATTGGCCAAACTCT--------------------CAGAT-----------------------------------TCTCT-----TTG-------------------------------------------CGAAATATCAAATCGACCCACCCTTTTGAAATCCCTA-----------AATTCCGTATCTAAACCCTCT--A--CTTCCCCACC----------------------------------CATAGACATGTACCTGCCCCTGCCCAAAGACCCTTGCAGACCCTCGCCTTGTGGG---------------------
droBip1 scf7180000396433:209564-209844 + GCCCGGTTTCACCG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCAATCCGCTGCGAGCCTGTGTGGAGAGACCATCAAGTAGGAATCTGACCTCCA------CA-AGGGTGGTTCGATTTGG--GGTTAAAGAATCAAACATCCAAATT---------------------------------------------------------------------------------------------------TCCAG----------------------AAACGGC-------------ATTC---------ATTGGCCACATTCT--------CTAATA---T--T----------------------------------------TTCT-----TGG-------------------------------------------CAAACCCTTAAATCGACCCACCCTTCTGGAATCCCCAA-ACT--T--------CAGATCTAAACCCTGT--A--CTTCCCCACC----------------------------------CATAGATATGTACCTGCCCCTGCCCAAAGACCCTTGTAGACCCTCGCCTTGTGGG---------------------
dp5 4_group3:11342807-11343149 + CCCCGAGTTTGAGGGAGCCCCGCCCAACTGCCGTCCCCAGTGTACATCCAGCTCTGAGTGTCCCTCCACCCAGGCTTGCATCAGCTACAAGTGTGCCGATCCCTGTCCTGGTGTGTGTGGCCAGCTTGCGATCTGTGAGGTGCGAAACCATAGTCCCATCTGTAGGTGTCCCCCGGCCATGATGGGCGATCCCTTCGTGCGCTGTC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGCCACGACCAGAGA----------------------GTAAGGAACGATCCAGAACTATGATCCAGAATGGTGTTAATCCTTTACGACCCTCG----------------------------------------------ACAGTT-----CC-T--CCACCC----------------------------------CTAAGAGATGTGGC--CCCCTAC--CGCGATCCCTGTGCACCCTCACCCTGTGGC---------------------
droPer2 scaffold_8:2553761-2553964 + ACCCAACTGTGAAT---------------------------------------------------------------------------------------------------------------------------------------------------------GCCTGCCCGGCTACACGGGAAACCCCATTGTCGGCTGTC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACCTGGTACCCGAGACGCCACGCTG-----TAAGA-------------------------------------------CCCCCACAAAGCTAGGCCC--CCGCT--GAAACCCTAC-TAA--TTGTCGCCATTTACCGCCCTC---------CT--GCTCGA----------------------------------TCTAGATCCCGACCCAATAGTACCCGAAAATCCATGCCAACCCTCGCCCTGCGGC---------------------
droWil2 scf2_1100000004516:2703061-2703247 + TACCGGTTTTACGG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTGATGCCTTTACACGTTGCT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATCCC-----------------TTGCCAAGTAAGATAATTAA-----------------------------------------AATGGAATCCGACCAATTCGCATTACACTTT------------------------------------------------CTCCAATTTACAGTTCTCCCACCT----------ATTCAA----CAATTAGACGTTTCTCAGAACCCCTGCTTCCCGTCACCCTGCGGCCAGTATGCACAGTGCCGTGAT
droVir3 scaffold_12963:11804268-11804490 + AGCGGGCATGACGG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTGATCCGTTCCGACTCTGCCAGCAAGTGCCCCAAAGTAAGAACCAATCGGCCAACCCAACAAGTTTGCATATTGTATATAGGCAG-------G--------------------------------------------------------------------------G-----------------------------------------------------------------------C---------A--------------------------------------------------------------AC------------------------CTTTCT-----CCC----------CCAACCACCACAA--------------------------------------CAACTCTATATAA----------------------------------------------TCTTAAT-CTTACATA-TTCATTT------------ACAGCTTTGCCGAAACCATTGCCTACACCAAAGAATCCCTGCAATCCATCACCGTGTGGC---------------------
droMoj3 scaffold_6500:20506719-20506952 + TGCCGGTATGACGG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTGATCCGTTCCGACTTTGCCAGCAAGTTCAACAACGTAAGAACCAATTGTCCAACCAAACAAGTTTGCATATTGTATATAGGCAG-------G--------------------------------------------------------------------------G-----------------------------------------------------------------------C---------G--------------------------------------------------------------AC------------------------CTCTCT-----TC-------------------------------------------------------ACCACCCCACCCCACC------------CAA--CCCTAAATCTAGACCTAATTTAT----A--CA----------------------TTTTATATCGATTTCACAGCTGTGCCAACGCCAGTGCCTTCGCCGAAGAATCCATGCCAGCCATCGCCGTGTGGT---------------------
droGri2 scaffold_15126:5321502-5321668 + CCCAGGTTTCACAG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCAATCCCCTGCGTGCCTGCATCGAAAAGCCCACAAGTATACACACTCAAA------TAACAGATGTAGAATTTGTCTTTAAACAA--------------------------------------------------------------------------------------------------------------------------------------------------------TG-------------ACTT-------------------------------------------------------------------------------------------------------------------------------------------------------------------CGTG---------------------------------------------T---ACCTGCC----------------------------------CTTAGATATGTACCTGCCATTACCCAAAGATCCATGCAGACCTTCACCCTGCGGC---------------------

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
ACCCCACTTCACAG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCAATCCACTGCGTGCATGCGTCGAGAGGCCTTCAAGTATGACTTTGTCCT------------GGGATGGGCCGACTGGTTTGGAAAACCAAT------C-----ATATACAACTC-----------------------GGATTACTT---AA--AATGT---------------------------------------------TGCCTA----------------------AATTAAA-------------GCTT---------TTCGATCTTATTCT--------TTGATG---T--CAGATT--------------------------------------------TGT-------------------------------------------CATCCAAACAAATCGGCCCAACTCCGTATACACCCTAT-AGA--TCAGAAGTATTGACCTAACTCCT----A--CT--TCCTCA----------------------------------CATAGATATGTACCTACCCTTGCCCAAAGACCCTTGTAGACCGTCGCCTTGTGGC---------------------SizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTGTAGACCGTCGC.............................1517.00700000001510000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTGTAGACCGTCGCT............................1613.00300000030000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGACCCTTGTAGACCG.................................1811.00110000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCCTTGTAGACCGTCGCT............................1811.00100000001000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGACCCTTGTAGACCGTCGCCTTG.........................2611.00110000000000000000
........................................................................................................................................................................................................................TTCAAGTATGACTTTGTCCT------------...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00110000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCCTTGTAGACCGTCGCC............................1811.00110000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCCTTGTAGACCGTCGCCTTGTG.......................2311.00110000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGACCCTTGTAGACCGTC...............................2011.00110000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCCCAAAGACCCTTGTAGACCGTCGC.............................2711.00110000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGTAGACCGTCGCT............................1550.40200000011000000000
droSec2
ACCCCACTTCACAG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCAATCCACTGCGCGCATGCGTCGAGAGGCCTTCAAGTATGACTATGTCCT------------GGGGTGGGCCGACTTGTTTGGAAAAC----------------------AACTC-----------------------GGATTACTT---AA--AATTT---------------------------------------------TGCCTA----------------------AATTAAA-------------GCTT---------TTCGATCTTATTCT--------TTGATG---T--CAGATT--------------------------------------------TGT-------------------------------------------CATCCAAACAAATCGGCCCAACTCGTTATACACCCTAT-GGA--TCAGAAGTATTGAGCTAACTCCT----A--CC--TCCTAA----------------------------------AATAGATATGTACCTACCCTTGCCCAAAGACCCTTGTAGACCGTCGCCTTGTGGC---------------------SizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACCCTTGTAGACCGTCGCCTTGTGG......................2511.0010001
.....................................................................................................................................................................................................................................................................TTGTTTGGAAAAC----------------------AACTC-----------------------GGAT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0011000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTGTAGACCGTCGCCTGC.........................1940.2510100
dm3
ACCCCACTTAACAG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCAATCCACTGCGCGCATGCGTCGAGAGGCCCTCAAGTATGACTTTGTCCT------------GGGATGGGTCGACTTGTTTGGAAAACCAAT------C-----ACATACAACTC-----------------------GCATTACTT---AA--ACTTT---------------------------------------------TTCCTA----------------------ACTTAAA-------------ACTT---------ATCGATCGTATTCT--------TTGATG---T--CAGATT--------------------------------------------TGT-------------------------------------------CATCCAAACAAATCGGCCCAACTCGTTATACACCATAT-AGA--TCAGAAGTATTGACCTAACTCCTA---A--CT--TATTCA----------------------------------CATAGATATGTACCTACCCCTGCCCAAAGACCCTTGTAGACCGTCGCCTTGTGGC---------------------SizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCCTTGTAGACCGTCGCT............................1814.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTGTAGACCGTCGCCTTGT........................2012.0020000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTGTAGACCGTCGCCTGC.........................1941.7570000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000010000000003000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000010000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACCTACCCCTGCCCAAAGAC.............................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................CT--------TTGATG---T--CAGATT--------------------------------------------TGT-------------------------------------------..................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTGTAGACCGTCGCCTC..........................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAGACCGTCGCCTTGTGG......................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000
..........ACAG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCAATCCACTGCGCGCATGCGTC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACTCCTA---A--CT--TATTCA----------------------------------CATAGATATG..................................................................2711.0010000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTGTAGACCGTCGCCTG..........................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droEre2
ACCTCACTTCACAG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCAATCCCCTGCGCGCATGCGTCGAGAGGCCCTCAAGTATGACTTTGTCCT------------GGGCTGGGTCGATTTGTTTGGAAAACGAAT------CGTTTTATCTTAAACTC-----------------------GGATTACTC---AGCTAATTT---------------------------------------------TGTCTA----------------------AATTATG-------------ACTT----------TGGTTCT--------------------------TAGCTTTGGT---TC---T--------------------AC----------TT-------------------------------------------CACCCAAAGAAATCGACCCAACTCGTTATACACCTTA-------TCAGGAGTCTTGAACTTAATGTT----A--CT--TCCCCT----------------------------------TATAGACATGTACCTTCCCCTGCCCAAAGACCCTTGTAGACCGTCGCCTTGTGGC---------------------SizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTGTAGACCGTCGC.............................1517.0070000007
droYak3
ACCTCACTTCACAG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCAATCCACTGCGCGCATGCGTCGAGAGGCCCACAAGTATGACTTTGTCCT------------GGGTTGGGTCGACTTGTTTGGAGAACGAAT------CCCAATGTTTTAGACTC-----------------------GGATTACTC---AACTAATTT---------------------------------------------TGCATG----------------------AATTTTA-------------GCTT----------TGGTTCTTATTTT--------TTGATG---A--CAGATT--------------------------------------------TGT-------------------------------------------CATCCAAACAAATCGACCCAGCTCGTTGTACACCTTAT-AGA--TCAGGAGTCTTTACCTAAATGCT----A--CT--TCCCCT----------------------------------TATAGACATGTACCTTCCCCTGCCCAAAGACCCTTGTAGACCGTCGCCTTGTGGC---------------------SizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
...........................................................................................................................................................................................................................................................TTGGGTCGACTTGTTTGGAGA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00110000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCCCAAAGACCCTTGTAGAC...................................2111.00100000100000
..........................................................................................................................................................................................CAATCCACTGCGCGCATGC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00100001000000
droEug1
ACCAGATTTCACCG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCAATCCGCTGCGAGCATGCGTCAAGAGACCTTCAAGTATGACTTTGTCCT------------GGGGTGGGTCGACTTGAAGAGAACACGAAT------TG-----TAGTTACTTTATAATCTTTATTCTCTAAAAGTTGGT------------------TTTA----------------------------AGGCTGAAATAATTTCTTAAAATAGGAAAAACTGAACTGTAATCTATGAGTTCAGATC----------------------------TC--------GTT---CGTCTTCTCTGG---A-----------------------------------------TT-------------------------------------------CCACCAATCAAATCGACCCACCTCTCAG--CAACCTTT-AGA--CCAGAATTCTTGATCTAACTGTTTTGC-CC-T--CCTCCT----------------------------------CATAGATATGTACCTGCCCCTGCCAAAAGACCCTTGTAGACCCTCTCCTTGTGGC---------------------SizeHit CountTotal NormTotal
No Reads
droBia1
GCCGGGTTTCACCG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCAATCCACTGCGCGCATGCGTCGAAAGGCCCTCAAGTATGACTCTATCCT------------GGGGTGGGTCGATTTGTGAGAGATAG-TCT------AG------------------------------------------------TTCA--TGTATCCAATTGAGTCTAATAATTAAGTTATTCAACAGTAATGAT-----------AAACAGAAAA----------------------TCAAATCCCAAATTCGTTGACTA-GAG-TCC--------------TCA--------T---CTCCGGT--------------------------------------------------------------------------------------------GTCAAATCGACCCGCCCTCTTATACCCCGCCTCG-GT-CCAGAATCCTTCATCTAACTGCTCTAT-CC-T-CTCCCCC----------------------------------TATAGATATGTACCTACCCCTACCCAAAGACCCTTGTAGACCCTCGCCTTGTGGC---------------------SizeHit CountTotal NormTotal
No Reads
droTak1
AAAAAAA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AC------T-----ATTTAGAAATT-----------------------TATCTACTT---AG--AATTT---------------------------------------------TGAAGA----------------------AATTCCA-------------ATTTGA--AATAT-AAG-TTT--------------CCA--------T---TCCTGTT-----GCCCCAAT-----------------TTGCT-----TGG-------------------------------------------CATCCGAATAAATCGACCCACCCTTTCATACACTCCTC-CGT--CCAGCGTTCTTGATCTAACTGCTCTGC-CC-T-TCCTCCC----------------------------------CATAGATATGTACCTACCCCTGCCCAAAGACCCTTGTAGACCCTCGCCTTGTGGC---------------------SizeHit CountTotal NormTotal
No Reads
droEle1
ATCCGGATTCACTG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCAATCCCTCTCAATACTGCCGGGAGATACCTAGATGTAGGATATTATTTCAC-------AT-AGGATGGGTCGAGGCTTACGGAAACGATGT------CATTAGTTATCAAAGAT-----------------------AGAAT---CGTTGA--AGTGATCCA-----------------------------------------------------------------------------------------------------------GAGAATTTC--------TTG---CGCTTTCAGTCG------------------------------------------------------------------------------------------AGTCCCTAAAAATCGACCCACTCTATAGTAATCCCAAT-TTT--CCGG----------ATAGCTCTTA---T--AA--CGATCACCCTGA-------------------------------CTTTTAG----TGACCGCACCTGTTGAACCGTGTCGTCCTTCGCCATGCGGT---------------------SizeHit CountTotal NormTotal
No Reads
droRho1
ACCGGACTTCACCG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCAATCCACTGCGCGCTTGCGTCGAAAGACCCTCAAGTATGACCCTATCCT------------GGGGTGGGTCGAATTGTATAGGAGAATAGT------AGC-------TAGAGTT-----------------------GGA---CTGAATTA--ATTTATTTA----------------------------AGGATGAA---------------------------------------------------------------------------ACATTCTTAGTCTACG------------------------------------------------------------TT-------------------------------------------CTTACAAACAAATCGGCCCACCCTTTTATACACCCTTT-AGA--CAAGAAGTATTGATCTAACTGCTATGA-CC-T--TTCCCA----------------------------------CATAGATATGTACCTGCCCCTGCCCAAAGACCCTTGTAGACCCTCGCCTTGTGGC---------------------SizeHit CountTotal NormTotal
No Reads
droFic1
GCCTGGTTTCACCG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCAATCCACTGCGCGCATGCGTCGAGAGGCCTTCAAGTATGACTCTGTCCT------------TGGGTGGGTCGACTTGTATAAAGAAAGGAT------TGCTA--------TGTT-----------------------GAG---CTTAATAG--AACTTTCAA----------------------------ATGACGAT-----------AAATAAGAAA-------------------------AAGC-------------------------------CTATTCCCC--------------------------------------------------------------T-------------------------------------------TCTCTAAGCAAATCGATCCACCCTTTTCT-TACCTCTC-AGA--C--------CCGACCTAATTGCCTTGT-CC-C--ACCCCA----------------------------------CATAGATATGTACCTGCCCCTGCCGAAAGACCCTTGTAGACCCTCGCCTTGTGGC---------------------SizeHit CountTotal NormTotal
No Reads
droKik1
GCCAGGCTTCACTG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCAATCCCTTGCGGGCCTGTGTCGAGAGACCATCAAGTATGACTCTTTAGACC--------AAGGGAGGGATTGATCTGTAGGGAACTA-TGT------CC------------------------------------------------TTTC--TATATCCA-T----------------------------------------TGAGTA----------------------AATCCAT-------------CTTT---------CGTGTCTTGAGTCC--------TTGAAG---T--CT------TTAAAA--------------------------A----------TT-------------------------------------------CTTCCCCGCATATCAATCCCCCCCTC-------------T-TTCTATGGAGTTCCCATTTAATTGCTCCTT-CC-TTTCCCCTT----------------------------------CCTAGATATGTATCTGCCCCTGCCCCATGATCCATGTAGACCCTCGCCTTGTGGC---------------------SizeHit CountTotal NormTotal
No Reads
droAna3
TCCCGGCTTCACCG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCAATCCGCTGCGAGCCTGTGTGGAGAGACCTTCAAGTAGGAATTTAACCTCC-------CA-AGGGTGGTTCGATTTT--GGGTTAAAGAACCGCATATTC------GAAAAC--------------------------------TT---TA--AG-------------------------------------------------------------------------------TGGC-------------ATGT---------ATTGGCCAAACTCT--------------------CAGAT-----------------------------------TCTCT-----TTG-------------------------------------------CGAAATATCAAATCGACCCACCCTTTTGAAATCCCTA-----------AATTCCGTATCTAAACCCTCT--A--CTTCCCCACC----------------------------------CATAGACATGTACCTGCCCCTGCCCAAAGACCCTTGCAGACCCTCGCCTTGTGGG---------------------SizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
............................................................................................................................................................................................ATCCGCTGCGAGCCTGTGTGGA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001010000
............................................................................................................................................................................................ATCCGCTGCGAGCCTGTGTGG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000001
................................................................................................................................................................................................GCTGCGAGCCTGTGTGGAGAGACCT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.001000001
droBip1
GCCCGGTTTCACCG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCAATCCGCTGCGAGCCTGTGTGGAGAGACCATCAAGTAGGAATCTGACCTCCA------CA-AGGGTGGTTCGATTTGG--GGTTAAAGAATCAAACATCCAAATT---------------------------------------------------------------------------------------------------TCCAG----------------------AAACGGC-------------ATTC---------ATTGGCCACATTCT--------CTAATA---T--T----------------------------------------TTCT-----TGG-------------------------------------------CAAACCCTTAAATCGACCCACCCTTCTGGAATCCCCAA-ACT--T--------CAGATCTAAACCCTGT--A--CTTCCCCACC----------------------------------CATAGATATGTACCTGCCCCTGCCCAAAGACCCTTGTAGACCCTCGCCTTGTGGG---------------------SizeHit CountTotal NormTotal
No Reads
dp5
CCCCGAGTTTGAGGGAGCCCCGCCCAACTGCCGTCCCCAGTGTACATCCAGCTCTGAGTGTCCCTCCACCCAGGCTTGCATCAGCTACAAGTGTGCCGATCCCTGTCCTGGTGTGTGTGGCCAGCTTGCGATCTGTGAGGTGCGAAACCATAGTCCCATCTGTAGGTGTCCCCCGGCCATGATGGGCGATCCCTTCGTGCGCTGTC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGCCACGACCAGAGA----------------------GTAAGGAACGATCCAGAACTATGATCCAGAATGGTGTTAATCCTTTACGACCCTCG----------------------------------------------ACAGTT-----CC-T--CCACCC----------------------------------CTAAGAGATGTGGC--CCCCTAC--CGCGATCCCTGTGCACCCTCACCCTGTGGC---------------------SizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
....................................................................................................CCCTGTCCTGGTGTGTGTGGCC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010100000000
droPer2
ACCCAACTGTGAAT---------------------------------------------------------------------------------------------------------------------------------------------------------GCCTGCCCGGCTACACGGGAAACCCCATTGTCGGCTGTC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACCTGGTACCCGAGACGCCACGCTG-----TAAGA-------------------------------------------CCCCCACAAAGCTAGGCCC--CCGCT--GAAACCCTAC-TAA--TTGTCGCCATTTACCGCCCTC---------CT--GCTCGA----------------------------------TCTAGATCCCGACCCAATAGTACCCGAAAATCCATGCCAACCCTCGCCCTGCGGC---------------------SizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
No Reads
droWil2
TACCGGTTTTACGG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTGATGCCTTTACACGTTGCT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATCCC-----------------TTGCCAAGTAAGATAATTAA-----------------------------------------AATGGAATCCGACCAATTCGCATTACACTTT------------------------------------------------CTCCAATTTACAGTTCTCCCACCT----------ATTCAA----CAATTAGACGTTTCTCAGAACCCCTGCTTCCCGTCACCCTGCGGCCAGTATGCACAGTGCCGTGATSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCAGTATGCACAGTGCCGT...1911.00100010
droVir3
AGCGGGCATGACGG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTGATCCGTTCCGACTCTGCCAGCAAGTGCCCCAAAGTAAGAACCAATCGGCCAACCCAACAAGTTTGCATATTGTATATAGGCAG-------G--------------------------------------------------------------------------G-----------------------------------------------------------------------C---------A--------------------------------------------------------------AC------------------------CTTTCT-----CCC----------CCAACCACCACAA--------------------------------------CAACTCTATATAA----------------------------------------------TCTTAAT-CTTACATA-TTCATTT------------ACAGCTTTGCCGAAACCATTGCCTACACCAAAGAATCCCTGCAATCCATCACCGTGTGGC---------------------SizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGAATCCCTGCAATCCA.................................1912.002020000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................AGAACCAATCGGCCAACCCAA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000000000000000000000000100000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCATTGCCTACACCAAAGAAT.............................................2111.001000000000000000000000000010000000000000000000000000000000000000
..CGGGCATGACGG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTGATCCGT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000000001000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................GTTCCGACTCTGCCAGCAAGT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000000000000000000000000000000010000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTACACCAAAGAATCCCTGCT......................................2111.001000000000000000000000000000000000000010000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGAATCCCTGCAATCCATCA..............................2111.001000000000000000000000000000000000000010000000000000000000000000
...........................................................................................................................................................................................GATCCGTTCCGACTCTGCCAGCAAGT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.001001000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................CGTTCCGACTCTGCCAGCAAGTGCCCC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.001010000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................TTCCGACTCTGCCAGCAAGTG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000000000000000000000000000000000000010000000000000000000000000
..................................................................................................................................................................................................TCCGACTCTGCCAGCAAGTGCCCC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.001100000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................TAGGCAG-------G--------------------------------------------------------------------------G-----------------------------------------------------------------------C---------A--------------------------------------------------------------AC------------------------CTTTCT-----C...............................................................................................................................................................................................................................................2011.001000000000000000000000000000000010000000000000000000000000000000
.......................................................................................................................................................................................................................CCCAAAGTAAGAACCAATCGG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000000000000000000000000000000000000010000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A-TTCATTT------------ACAGCTTTGCCGA....................................................................2111.001000000000000000000000000000000000000010000000000000000000000000
droMoj3
TGCCGGTATGACGG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTGATCCGTTCCGACTTTGCCAGCAAGTTCAACAACGTAAGAACCAATTGTCCAACCAAACAAGTTTGCATATTGTATATAGGCAG-------G--------------------------------------------------------------------------G-----------------------------------------------------------------------C---------G--------------------------------------------------------------AC------------------------CTCTCT-----TC-------------------------------------------------------ACCACCCCACCCCACC------------CAA--CCCTAAATCTAGACCTAATTTAT----A--CA----------------------TTTTATATCGATTTCACAGCTGTGCCAACGCCAGTGCCTTCGCCGAAGAATCCATGCCAGCCATCGCCGTGTGGT---------------------SizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
No Reads
droGri2
CCCAGGTTTCACAG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCAATCCCCTGCGTGCCTGCATCGAAAAGCCCACAAGTATACACACTCAAA------TAACAGATGTAGAATTTGTCTTTAAACAA--------------------------------------------------------------------------------------------------------------------------------------------------------TG-------------ACTT-------------------------------------------------------------------------------------------------------------------------------------------------------------------CGTG---------------------------------------------T---ACCTGCC----------------------------------CTTAGATATGTACCTGCCATTACCCAAAGATCCATGCAGACCTTCACCCTGCGGC---------------------SizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads

Generated: 05/18/2015 at 01:05 PM