ID:

dsi_12868

 Coordinate:

node_26155:11725-11874 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-5.9 -5.8

Flybase annnotation

intergenic

Repeatable elements

NameClassFamilyStrand
DNAREP1_DMRCHelitron+

Sense Strand Reads

TTCTGCCTGTTACATAATTTTCAACGAATCTAGTATGTCATTTTACTCTACGAGTAACGGGTAAAAATACCATACAGCAAAGTGGGCTCACTAATGTTCGAATTGTCTCGTATATGTAGTACCACTGAATGCAACTTATTTATGCTCTCCAAATTCACAGATCATATTATTTCTGCTGCCTAATAATTTGTTTCTTACAGGCGAATCCATAAGCCGAGCAGAAGATGAACATGTTCGAATAATTCAATCA
**********************************************************************************..((...((((((((.(((......))).)))).)))).)).................************************************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553485
Chicharo_3 day-old ovaries
 SRR553486
Makindu_3 day-old ovaries
 SRR553488
RT_0-2 hours eggs
 SRR553487
NRT_0-2 hours eggs
 SRR618934
dsim w501 ovaries
 SRR902008
ovaries
 O002
Head
 M025
embryo
 M053
female body
 SRR902009
testis
..................................................................................TGGGCTCACTAATGTTCGAATTGTC............................................................................................................................................... 25 0 1 9.00 9 5 1 1 2 0 0 0 0 0 0
................................................................................................................TATGTAGTACCACTGAATGCAACTTATT.............................................................................................................. 28 0 1 8.00 8 2 4 1 0 0 0 0 1 0 0
..................TTTCAACGAATCTAGTATGTCATT................................................................................................................................................................................................................ 24 0 1 6.00 6 1 2 2 0 1 0 0 0 0 0
..............................................................................AAAGTGGGCTCACTAATGTTCGAAT................................................................................................................................................... 25 0 1 5.00 5 1 1 1 0 2 0 0 0 0 0
...TGCCTGTTACATAATTTTCAACGAA.............................................................................................................................................................................................................................. 25 0 5 4.20 21 3 3 11 4 0 0 0 0 0 0
...........................................................................................................TCGTATATGTAGTACCACTGAATGCAACT.................................................................................................................. 29 0 1 4.00 4 1 2 0 0 0 0 0 1 0 0
..............................................TCTACGAGTAACGGGTAAAAATACCA.................................................................................................................................................................................. 26 0 1 3.00 3 0 0 0 0 3 0 0 0 0 0
...................................TGTCATTTTACTCTACGAGTAACGGG............................................................................................................................................................................................. 26 0 1 3.00 3 1 1 1 0 0 0 0 0 0 0
................................................................................................................TATGTAGTACCACTGAATGCAACTTA................................................................................................................ 26 0 1 3.00 3 0 1 1 1 0 0 0 0 0 0
................................................TACGAGTAACGGGTAAAAATACCATA................................................................................................................................................................................ 26 0 1 3.00 3 0 1 1 0 1 0 0 0 0 0
..............................................................................................................TATATGTAGTACCACTGAATGCAAC................................................................................................................... 25 0 1 3.00 3 0 1 0 2 0 0 0 0 0 0
..................................................................................TGGGCTCACTAATGTTCGAATTGTCTCG............................................................................................................................................ 28 0 1 3.00 3 1 1 0 1 0 0 0 0 0 0
.............................................................................................................................................................................................................TCCATAAGCCGAGCAGAAGATGAACA................... 26 0 1 3.00 3 2 0 0 0 0 1 0 0 0 0
......CTGTTACATAATTTTCAACGAA.............................................................................................................................................................................................................................. 22 0 8 2.25 18 0 0 0 0 0 0 18 0 0 0
................................................................................................................TATGTAGTACCACTGAATGCAACT.................................................................................................................. 24 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................................AGCCGAGCAGAAGATGAACATGTTA.............. 25 1 1 2.00 2 0 0 0 1 0 1 0 0 0 0
..................TTTCAACGAATCTAGTATGTCATTT............................................................................................................................................................................................................... 25 0 1 2.00 2 0 2 0 0 0 0 0 0 0 0
.................................TATGTCATTTTACTCTACGAGTAACGGG............................................................................................................................................................................................. 28 0 1 2.00 2 1 0 1 0 0 0 0 0 0 0
.................................................................................................................................................................................................................TAAGCCGAGCAGAAGATGAACATGTT............... 26 0 1 2.00 2 0 0 0 0 0 2 0 0 0 0
.......................................................................................................TGTCTCGTATATGTAGTACCACTGAA......................................................................................................................... 26 0 1 2.00 2 0 0 1 1 0 0 0 0 0 0
..................................................................................TGGGCTCACTAATGTTCGAATTGTCT.............................................................................................................................................. 26 0 1 2.00 2 0 0 0 1 1 0 0 0 0 0
.....................................................................................................ATTGTCTCGTATATGTAGTACCACTGAA......................................................................................................................... 28 0 1 2.00 2 0 1 1 0 0 0 0 0 0 0
...........................................................................................TAATGTTCGAATTGTCTCGTA.......................................................................................................................................... 21 0 1 2.00 2 1 0 1 0 0 0 0 0 0 0
.................................................................................................................................................................................................................TAAGCCGAGCAGAAGATGAACATGT................ 25 0 1 2.00 2 0 0 0 0 0 2 0 0 0 0
......................................................................................CTCACTAATGTTCGAATTGTCTCGTA.......................................................................................................................................... 26 0 1 2.00 2 0 1 0 1 0 0 0 0 0 0
.............................................................................................................................TGAATGCAACTTATTTATGCTCTCCAAA................................................................................................. 28 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0
..................TTTCAACGAATCTAGTATGTCATTTTA............................................................................................................................................................................................................. 27 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0
...................................................................................................................................................................................................................AGCCGAGCAGAAGATGAACATG................. 22 0 1 1.00 1 0 0 0 0 0 0 0 0 0 1
..............................................................................................................................................................................................................CCATAAGCCGAGCAGAAGATGAACATG................. 27 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0
..................................................................................TGGGCTCACTAATGTTCGAATTGTCTCGTA.......................................................................................................................................... 30 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................................TCCATAAGCCGAGCAGAAGATGAACAT.................. 27 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0
............................................................................................................CGTATATGTAGTACCACTGAATGCAACT.................................................................................................................. 28 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
.......................................................................................................................TACCACTGAATGCAACTTATTTA............................................................................................................ 23 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
.......................................................................................................TGTCTCGTATATGTAGTACCACTGA.......................................................................................................................... 25 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0
.........................................................................................................TCTCGTATATGTAGTACCACTGAA......................................................................................................................... 24 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................................TCCATAAGCCGAGCAGAAGATGAACATG................. 28 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0
............................................................................................................................................................................................................ATCCATAAGCCGAGCAGAAGATGAACA................... 27 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0
...................................................................................................................................................................................................TACAGGCGAATCCATAAGCCGAGCAGA............................ 27 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
..................TTTCAACGAATCTAGTATGTCATTTT.............................................................................................................................................................................................................. 26 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
....................................................................................................................................AACTTATTTATGCTCTCCAAATTCACAGA......................................................................................... 29 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0
..............................................................................AAAGTGGGCTCACTAATGTTCGAATTGTC............................................................................................................................................... 29 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
..................................................................................TGCGCTCACTAATGTTCGAATTGTC............................................................................................................................................... 25 1 1 1.00 1 0 0 0 0 0 0 0 0 1 0
.........................................................................................................................................................................................................................GCAGAAGATGAACATGTT............... 18 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0
..................................................................................................................TGTAGTACCACTGAATGCAACTTATT.............................................................................................................. 26 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0
..............................................TCTACGAGTAACGGGTAAAAATACC................................................................................................................................................................................... 25 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0
................................................TACGAGTAACGGGTAAAAAT...................................................................................................................................................................................... 20 0 2 1.00 2 0 0 0 0 0 0 2 0 0 0
.......................................................................................TCACTAATGTTCGAATTGTCTCGTA.......................................................................................................................................... 25 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0
..............................................TCTACGAGTAACGGGTAAAAATACCATA................................................................................................................................................................................ 28 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0
..................................................................................................................TGTAGTACCACTGAATGCAACTT................................................................................................................. 23 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
..............................................................................................TGTTCGAATTGTCTCGTATATGTAGT.................................................................................................................................. 26 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0
..................................................................................................................TGTAGTACCACTGAATGCAACT.................................................................................................................. 22 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................TTCTGCTGCCTAATAATTTGTTTCT....................................................... 25 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0
...................................................................TACCATACAGCAAAGTGGGCTCACTAA............................................................................................................................................................ 27 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0
..........................................................................................................CTCGTATATGTAGTACCACTGAATGC...................................................................................................................... 26 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0
...............................................................................................................ATATGTAGTACCACTGAATGCAACT.................................................................................................................. 25 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................TTTCTGCTGCCTAATAATTTGTTTCT....................................................... 26 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0
............................................................................................................................................................................................................ATCCATAAGCCGAGCAGA............................ 18 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0
..CTGCCTGTTACATAATTTTCAACGAA.............................................................................................................................................................................................................................. 26 0 5 1.00 5 0 3 2 0 0 0 0 0 0 0
.................TTTTCAACGAATCTAGTATGTCATTTT.............................................................................................................................................................................................................. 27 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0
..............................................................................AAAGTGGGCTCACTAATGTTCGAATTG................................................................................................................................................. 27 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0
..............................................................................................................TATATGTAGTACCACTGAATGCAACT.................................................................................................................. 26 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0
..................................................................................TGGGCTCACTAATGTTCGAATTGTCTA............................................................................................................................................. 27 1 1 1.00 1 0 0 0 0 0 1 0 0 0 0
........................................................................TACAGCAAAGTGGGCTCACTAATGTT........................................................................................................................................................ 26 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0
..............................................................................................TGTTCGAATTGTCTCGTATATGTAGTA................................................................................................................................. 27 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0
.............................................................................................................................................................................................................TCCATAAGCCGAGCAGAAGATGAA..................... 24 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0
..............................................TCTACGAGTAACGGGTAAAAAT...................................................................................................................................................................................... 22 0 2 0.50 1 0 0 0 0 0 1 0 0 0 0
TTCTGCCTGTTACATAATTTTCAACGAA.............................................................................................................................................................................................................................. 28 0 5 0.40 2 0 0 2 0 0 0 0 0 0 0
..........TACATAATTTTCAACGAATCTAGTA....................................................................................................................................................................................................................... 25 0 3 0.33 1 1 0 0 0 0 0 0 0 0 0
...................................................................................................GAAGTGTCTCGTATA........................................................................................................................................ 15 1 4 0.25 1 0 0 0 0 1 0 0 0 0 0
......CTGTTACATAATTTTCAACGAATCT........................................................................................................................................................................................................................... 25 0 5 0.20 1 0 0 0 0 0 0 0 1 0 0
TTCTGCCTGTTACATAATTTTCAACGA............................................................................................................................................................................................................................... 27 0 5 0.20 1 0 0 0 1 0 0 0 0 0 0
TTCTGCCTGTTACATAATTTTCAAC................................................................................................................................................................................................................................. 25 0 5 0.20 1 0 0 1 0 0 0 0 0 0 0
..................ATTCAACGAATCTAGTATGTT................................................................................................................................................................................................................... 21 2 5 0.20 1 0 0 0 0 1 0 0 0 0 0
.TCTGCCTGTTACATAATTTTCAACGAA.............................................................................................................................................................................................................................. 27 0 5 0.20 1 1 0 0 0 0 0 0 0 0 0
...TGCCTGTTACATAATTTTCAACGA............................................................................................................................................................................................................................... 24 0 5 0.20 1 0 0 1 0 0 0 0 0 0 0
..........................................TTACTCTACGAGTAACGGGTAAAA........................................................................................................................................................................................ 24 0 8 0.13 1 1 0 0 0 0 0 0 0 0 0
.............ATAATTTTCAACGAA.............................................................................................................................................................................................................................. 15 0 19 0.11 2 0 0 1 0 1 0 0 0 0 0
TTCTGCCTGTTAAATAATTTTCAACGAA.............................................................................................................................................................................................................................. 28 1 10 0.10 1 0 0 1 0 0 0 0 0 0 0
................................................TACGAGTAACGGGTAAAA........................................................................................................................................................................................ 18 0 13 0.08 1 0 0 0 0 1 0 0 0 0 0
TTCTGCCTGTTACATAATTTTCAACGAT.............................................................................................................................................................................................................................. 28 1 13 0.08 1 0 0 0 1 0 0 0 0 0 0
.......................................ATTTTACTCTACGAGT................................................................................................................................................................................................... 16 0 15 0.07 1 0 0 0 0 1 0 0 0 0 0
...TGTCTGTTACATAATTTTCAACGAA.............................................................................................................................................................................................................................. 25 1 19 0.05 1 0 0 0 1 0 0 0 0 0 0
.................................................ACGGGTAACGGGGAAAAA....................................................................................................................................................................................... 18 2 20 0.05 1 0 0 0 0 0 0 0 0 1 0
.............ATAATTTTGAACGAAACT........................................................................................................................................................................................................................... 18 2 20 0.05 1 0 0 0 0 1 0 0 0 0 0

Anti-sense strand reads

AAGACGGACAATGTATTAAAAGTTGCTTAGATCATACAGTAAAATGAGATGCTCATTGCCCATTTTTATGGTATGTCGTTTCACCCGAGTGATTACAAGCTTAACAGAGCATATACATCATGGTGACTTACGTTGAATAAATACGAGAGGTTTAAGTGTCTAGTATAATAAAGACGACGGATTATTAAACAAAGAATGTCCGCTTAGGTATTCGGCTCGTCTTCTACTTGTACAAGCTTATTAAGTTAGT
**************************************************************************************************************..((...((((((((.(((......))).)))).)))).)).................********************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553486
Makindu_3 day-old ovaries
 SRR553488
RT_0-2 hours eggs
 SRR553485
Chicharo_3 day-old ovaries
 SRR902008
ovaries
 SRR618934
dsim w501 ovaries
 SRR553487
NRT_0-2 hours eggs
 O002
Head
 M025
embryo
 M053
female body
 SRR902009
testis
 GSM343915
embryo
....CGGACAATGTATTAAAAGTTGCTT.............................................................................................................................................................................................................................. 24 0 5 12.40 62 21 12 11 1 1 16 0 0 0 0 0
.AGACGGACAATGTATTAAAAGTTGCTT.............................................................................................................................................................................................................................. 27 0 5 6.80 34 17 9 4 0 0 3 0 0 1 0 0
.AGACGGACAATGTATTAAAAGTTGCT............................................................................................................................................................................................................................... 26 0 5 4.40 22 10 10 1 0 0 1 0 0 0 0 0
............................AGATCATACAGTAAAATGAGATGCTCAT.................................................................................................................................................................................................. 28 0 1 3.00 3 0 0 0 3 0 0 0 0 0 0 0
......GACAATGTATTAAAAGTTGCT............................................................................................................................................................................................................................... 21 0 8 2.25 18 0 0 0 0 0 0 18 0 0 0 0
.......................TGCTTAGATCATACAGTAAAATGAGAT........................................................................................................................................................................................................ 27 0 1 2.00 2 0 0 0 0 2 0 0 0 0 0 0
............................AGATCATACAGTAAAATGAGATGCT..................................................................................................................................................................................................... 25 0 1 2.00 2 0 0 0 0 2 0 0 0 0 0 0
..........................TTAGATCATACAGTAAAATGAGATGCT..................................................................................................................................................................................................... 27 0 1 2.00 2 0 0 0 1 1 0 0 0 0 0 0
.......................................................................................................................................................................................................CCGCTTAGGTATTCGGCTCGTCTT........................... 24 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0
...ACGGACAATGTATTAAAAGTTGCTT.............................................................................................................................................................................................................................. 25 0 5 1.80 9 3 1 1 2 0 2 0 0 0 0 0
..............ATTAAAAGTTGCTTAGATCATACAGT.................................................................................................................................................................................................................. 26 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0
..........................TTAGATCATACAGTAAAATGAGATGCTCAT.................................................................................................................................................................................................. 30 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0
................TAAAAGTTGCTTAGATCATACAGT.................................................................................................................................................................................................................. 24 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0
.....................................................................................................................................................................................................GTCCGCTTAGGTATTCGGCTCGTCTT........................... 26 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0
........................................................................................................................................................................................................CGCTTAGGTATTCGGCTCGTCTT........................... 23 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0
..............................ATCATACAGTAAAATGAGATGCT..................................................................................................................................................................................................... 23 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
..........................TTAGATCATACAGTAAAATGAGATG....................................................................................................................................................................................................... 25 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0
.....................................................................................CGAGTGATTACAAGCTTAACAGAGCAT.......................................................................................................................................... 27 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................................CCGCTTAGGTATTCGGCTCGT.............................. 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
..............................................................................................................................................ACGAGAGGTTTAAGTGTCTAGTATAA.................................................................................. 26 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0
.................................................................................CACCCGCGTGATCCCAAGCTT.................................................................................................................................................... 21 3 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
.................................................................................................................................ACGTTGAATAAATACGAGAGGTTTAA............................................................................................... 26 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0
....CGGACAATGTATTAAAAGTTGCT............................................................................................................................................................................................................................... 23 0 5 0.80 4 2 1 1 0 0 0 0 0 0 0 0
..GACGGACAATGTATTAAAAGTTGCTT.............................................................................................................................................................................................................................. 26 0 5 0.60 3 2 1 0 0 0 0 0 0 0 0 0
....CGGACAATGTATTAAAAGTTGCTTA............................................................................................................................................................................................................................. 25 0 5 0.40 2 0 0 0 0 1 1 0 0 0 0 0
............................................TGAGATGCTCATTGCCCATTTTTGT..................................................................................................................................................................................... 25 1 4 0.25 1 0 1 0 0 0 0 0 0 0 0 0
....CGGACAATGTATTAAAAGTTGCTTAG............................................................................................................................................................................................................................ 26 0 4 0.25 1 0 1 0 0 0 0 0 0 0 0 0
...............TTAAAAGTTGCTTAGATCATA...................................................................................................................................................................................................................... 21 0 4 0.25 1 0 0 0 0 0 0 0 0 0 1 0
...ACGGACAATGTATTAAAAGTTGCT............................................................................................................................................................................................................................... 24 0 5 0.20 1 0 0 0 1 0 0 0 0 0 0 0
AAGACGGACAATGTAT.......................................................................................................................................................................................................................................... 16 0 20 0.20 4 0 0 0 0 4 0 0 0 0 0 0
..........................................AGTGAGATGCTCATTGCCCATTTTTGT..................................................................................................................................................................................... 27 2 5 0.20 1 1 0 0 0 0 0 0 0 0 0 0
..GACGGACAATGTATTAAAAGTTGCT............................................................................................................................................................................................................................... 25 0 5 0.20 1 0 0 1 0 0 0 0 0 0 0 0
.AGACGGACAATGTATTAAAA..................................................................................................................................................................................................................................... 20 0 6 0.17 1 0 0 1 0 0 0 0 0 0 0 0
.....GGACAATGTATTAAAAGTTGCTT.............................................................................................................................................................................................................................. 23 0 7 0.14 1 0 0 0 0 0 0 0 0 1 0 0
.....GGACAATGTATTAAAAGTTGCT............................................................................................................................................................................................................................... 22 0 7 0.14 1 0 0 0 0 0 1 0 0 0 0 0
.......................................................TTGCCCAGTTTTATG.................................................................................................................................................................................... 15 1 7 0.14 1 0 1 0 0 0 0 0 0 0 0 0
.AGACGGACAATGTATT......................................................................................................................................................................................................................................... 16 0 8 0.13 1 0 0 0 0 1 0 0 0 0 0 0
.......ACAATGTATTAAAAGTTGCTT.............................................................................................................................................................................................................................. 21 0 9 0.11 1 0 0 0 0 1 0 0 0 0 0 0
.................................................................................................................................................................AGTATAATAAAGACTA......................................................................... 16 1 20 0.10 2 0 0 0 0 0 2 0 0 0 0 0
.........................................AAGTGAGATGCTCATTGCCCATTTT........................................................................................................................................................................................ 25 1 11 0.09 1 0 1 0 0 0 0 0 0 0 0 0
.AGAAGGACAATGTATTAAAAGTTGCTT.............................................................................................................................................................................................................................. 27 1 12 0.08 1 0 0 0 0 0 1 0 0 0 0 0
..........ATGTATTAAAAGTTGCTT.............................................................................................................................................................................................................................. 18 0 12 0.08 1 0 1 0 0 0 0 0 0 0 0 0
.AGAGGGACAAAGTATTAAAAGTTGCTT.............................................................................................................................................................................................................................. 27 2 14 0.07 1 0 0 1 0 0 0 0 0 0 0 0
............GTATTAAAAGTTGCTT.............................................................................................................................................................................................................................. 16 0 15 0.07 1 1 0 0 0 0 0 0 0 0 0 0
...TCGGACAATGTATTAAAAGTTGCTT.............................................................................................................................................................................................................................. 25 1 17 0.06 1 0 1 0 0 0 0 0 0 0 0 0
...ACAGACAATGTATTAAAAGTTGCTT.............................................................................................................................................................................................................................. 25 1 19 0.05 1 0 0 0 0 0 1 0 0 0 0 0
..................AAAGTTGCTTAGATCAT....................................................................................................................................................................................................................... 17 0 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0
.................................................TGCTCATTGCCGGTTGTTA...................................................................................................................................................................................... 19 3 20 0.05 1 0 0 0 0 0 0 0 0 0 0 1
......................................GTAAAATGAGATGCT..................................................................................................................................................................................................... 15 0 20 0.05 1 0 0 0 0 1 0 0 0 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim2 node_26155:11675-11924 - dsi_12868 TTCTGC---------------------------------------------------CTG-----------------TTACATAATTTT----CAACGAATCTAGTATGTCATTTTACTCTACGAGTAACGGGTAAAAATACCATACA-----G----------------------CAAAGT-----------------------------------------------------GGGCTCACTAATGTTCGAATTGTCTCGTATATGTAGTACCACTGAATGCAACTTATTTATGCTCTCCAAATTCACAGATCA----------------------------TA-------------------------------------------TTA--TTTCTGCTGCCTAATAATTTGTTTCTT-----------ACAGGCGAATCCATAAGCCGAGCAGAA--------GAT-GAACATGTTCGAATAATTCAATCA
droSec2 scaffold_12946:257-506 - GTGTCCGGATTTAAACGGGGAATTCAAATTAATTAAGAATGAAAACTAGACTTCGGCAAGCCGAAGTTTCTATACTGTTCCATAATTCT----TTA----------------------------------------------------------------------ATAACTTTATTTGCACACACACACTATCATAACTCCATTCGC-----------ATCTATTTTGATTTGTGCAC------------------------------------------------------------------------------------A------------------------ATT------------------------TTA---------GGTAC--ATTTAACAGCTTGCTTGCAAGTTTTGA-----------TTTTGTGTCTTTTTACAGTGCTGCGAACAA-----GAA-GCCAGTCACTGAGAACGCTTACTA
dm3 chr3RHet:1017257-1017499 + AAATAG------------GGAAATTAAATTAATCAAGAAAGGAAGCTAGACTTCGGCAAGCCGAAGCTATAAAACCATTA--------------------------------------------------------------------------------------ATAACATTATTTTCA-----------------CTCCATTCGCGTCGAGAGTGAATCTGTTCTGATTTGTGCACA------------AT----------------------TTAACCAAATTT-----A--CGTT------------------------------------------------------------------GTGCCTTCTTGC---------GGTAC--ACTT----GCTCCCTTGCAAGTTTTGA-----------TTTTGTGTCTTTGAACAGTGGTCGGAAAAA----ATTATGGAAACAAAAGTTTTCTGCTGCTA
droEre2 scaffold_4845:1648639-1648733 + GG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTC--ATTTAACAGCTTGCTTTCAATTTTAGA-----------TTTTGTGTCTGTGTACAGTGGTCTGAAACAAACAAAAATGGAAACTAATGTTACCTGTTTCCA
droYak3 v2_chrUn_001:699674-699821 - TCTTT------------------------------------------------------------------------------------------C----------------------------------------------------------------------GTGCGTTTGTTTGTAT--ACACA---------------------------------------------------------------------------------------TAAACCGCGCTATGCATCCGCTTTCTCAATCTCTCGCTCT--------CTTATACAAAATTCAAAG--------------------------------TTCC---------GGTAC--ATTTAACAGCTCGCTTACAAGTTTTAA-----------TTTTGTGTCTTCGTACATTAATCTGAA------------------------------------
droEug1 scf7180000408895:5279-5352 - GAAAT-------------------GAAATTAAACGAGGTCGGAAACTA-ACTTCGGCAAGCCGAAGTTTTAATACCCTTGCAATTTTCC----CGAA----------------------------------------------------------------------T---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droBia1 scf7180000302121:70768-70990 - AAATT--------------------ATTTAAAACAAGAAAGGAAGTTA-ACTTCGGCAAGCCGAAGTTTGTATACCCTTGCAGTTATAAGAAATAAT------------------------------------------CA-ACTTTA-----GTAAATAATTTTT-TCATTTTATTTTCCCACTAATTT----------------------------------TCC----------------------------------------------------------------------------GATT--------TTTCCTATGACAGCTACATGATATAGTCGTCCGATTTTTATAAAATT-------------TAA---------TTCCT--ATTTCAGAACTAATTAAAAAATGTTG------------TTCTATACCCTTGC------------------------------------------------A
droTak1 scf7180000410408:42180-42324 - AA----------------------------------GAAAGGAAGCTA-GCTTCGGCCAGCCGAAGCTTATATACCCTTGCAGATTAAG----TGAA------------------------------------------CA-CCTATA-----G----------------------TTTAGT-----------------------------------------------------GCTCA----------------------------------------------------------------------------------------------CACTTATCGGTGCA--------------GTTCCAGGGA--TTGCAGAATCCTGCGTGCCTATTTAAAATTTTGTTTTTAAGTT------------------------------------------------------------------------------
droEle1 scf7180000490670:4348-4591 + GCACAAAAACTTATGTATTAAATCCACTTTAAACAAGAACAGGTTTAA-ATTTCGGCAAGCCGAAGTTTACATACCATTGAATTCTTAAAA-----A------------------------------------------CA-TCTAAATCTCGATTTATAGCCGTG-C--TTGTTTCAAAACATTGAAGCTATGATGATTTTTAGCTC-----------AATTATTC----------------------------------------------------------------------------GAAC--------GTTCCTATG------------------------ATTTTAATAAAATT-------------AAA---------AGC-------------GTAGTTCAGAAATTTTAAACCACTACTATTTTTATATCCTTGCAGAG---------------------------------------------
droRho1 scf7180000777589:1736-1909 - TTTCG-----------------------------------------------------------------------------TAATTCT----TAT--------------------------------------------------------------------CTGTGTTTTCTTTTGTGCATACACTTTAACTTATTT---------------------------------------------------------------------------------------------A--CGTTCCCGCTCTCTTGCTCT--------CTAGTTCTAAGTTCTAAGCGTGCA--------------GTTTCTGCGCTCTTGC---------GGTAC--TTATAACTGCTCGCTTATAAATTTCAA-----------TTCGCTTTCTTGGTACAGTGGTCCCAATAA---------------------------------
droFic1 scf7180000453572:385-446 + GAATT-------------------CAGTACAAACAAGGAAGGAAGCTA-GCTTCGGCAAGCCGAAGCTTATATACCCTTGCA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droWil2 scf2_1100000004830:624058-624112 + AAACTA----------------------------------T----GTAACTTTGGGAATGCCGAAATTTATATACCCTTACATATTTTT----CAAA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
TTCTGC---------------------------------------------------CTG-----------------TTACATAATTTT----CAACGAATCTAGTATGTCATTTTACTCTACGAGTAACGGGTAAAAATACCATACA-----G----------------------CAAAGT-----------------------------------------------------GGGCTCACTAATGTTCGAATTGTCTCGTATATGTAGTACCACTGAATGCAACTTATTTATGCTCTCCAAATTCACAGATCA----------------------------TA-------------------------------------------TTA--TTTCTGCTGCCTAATAATTTGTTTCTT-----------ACAGGCGAATCCATAAGCCGAGCAGAA--------GAT-GAACATGTTCGAATAATTCAATCASizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
.....................................................................................................................................................................................T-----------------------------------------------------GGGCTCACTAATGTTCGAATTGTC............................................................................................................................................................................................................................................2519.00900000051210000000
........................................................................................................................................................................................................................................................................TATGTAGTACCACTGAATGCAACTTATT...........................................................................................................................................................................................................2818.00800100024010000000
......................................................................................TTT----CAACGAATCTAGTATGTCATT.............................................................................................................................................................................................................................................................................................................................................................................................2416.00600000012021000000
.................................................................................................................................................................................AAAGT-----------------------------------------------------GGGCTCACTAATGTTCGAAT................................................................................................................................................................................................................................................2515.00500000011012000000
...TGC---------------------------------------------------CTG-----------------TTACATAATTTT----CAACGAA...........................................................................................................................................................................................................................................................................................................................................................................................................2554.2021000000334110000000
...................................................................................................................................................................................................................................................................TCGTATATGTAGTACCACTGAATGCAACT...............................................................................................................................................................................................................2914.00400100012000000000
......................................................................................................................TCTACGAGTAACGGGTAAAAATACCA...............................................................................................................................................................................................................................................................................................................................................................2613.00300000000003000000
...........................................................................................................TGTCATTTTACTCTACGAGTAACGGG..........................................................................................................................................................................................................................................................................................................................................................................2613.00300000011010000000
........................................................................................................................................................................................................................................................................TATGTAGTACCACTGAATGCAACTTA.............................................................................................................................................................................................................2613.00300000001110000000
........................................................................................................................TACGAGTAACGGGTAAAAATACCATA.............................................................................................................................................................................................................................................................................................................................................................2613.00300000001011000000
......................................................................................................................................................................................................................................................................TATATGTAGTACCACTGAATGCAAC................................................................................................................................................................................................................2513.00300000001200000000
.....................................................................................................................................................................................T-----------------------------------------------------GGGCTCACTAATGTTCGAATTGTCTCG.........................................................................................................................................................................................................................................2813.00300000011100000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCATAAGCCGAGCAGAA--------GAT-GAACA...................2613.00300000020000010000
.........................................................CTG-----------------TTACATAATTTT----CAACGAA...........................................................................................................................................................................................................................................................................................................................................................................................................2282.2518000001800000000000
........................................................................................................................................................................................................................................................................TATGTAGTACCACTGAATGCAACT...............................................................................................................................................................................................................2412.00200000020000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCCGAGCAGAA--------GAT-GAACATGTTA..............2512.00200000000100010000
......................................................................................TTT----CAACGAATCTAGTATGTCATTT............................................................................................................................................................................................................................................................................................................................................................................................2512.00200000002000000000
.........................................................................................................TATGTCATTTTACTCTACGAGTAACGGG..........................................................................................................................................................................................................................................................................................................................................................................2812.00200000010010000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................TAAGCCGAGCAGAA--------GAT-GAACATGTT...............2612.00200000000000020000
...............................................................................................................................................................................................................................................................TGTCTCGTATATGTAGTACCACTGAA......................................................................................................................................................................................................................2612.00200000000110000000
.....................................................................................................................................................................................T-----------------------------------------------------GGGCTCACTAATGTTCGAATTGTCT...........................................................................................................................................................................................................................................2612.00200000000101000000
.............................................................................................................................................................................................................................................................ATTGTCTCGTATATGTAGTACCACTGAA......................................................................................................................................................................................................................2812.00200000001010000000
...................................................................................................................................................................................................................................................TAATGTTCGAATTGTCTCGTA.......................................................................................................................................................................................................................................2112.00200000010010000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................TAAGCCGAGCAGAA--------GAT-GAACATGT................2512.00200000000000020000
..............................................................................................................................................................................................................................................CTCACTAATGTTCGAATTGTCTCGTA.......................................................................................................................................................................................................................................2612.00200000001100000000
.....................................................................................................................................................................................................................................................................................TGAATGCAACTTATTTATGCTCTCCAAA..............................................................................................................................................................................................2811.00100000000010000000
......................................................................................TTT----CAACGAATCTAGTATGTCATTTTA..........................................................................................................................................................................................................................................................................................................................................................................................2711.00100000000100000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCCGAGCAGAA--------GAT-GAACATG.................2211.00100000000000001000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................CCATAAGCCGAGCAGAA--------GAT-GAACATG.................2711.00100000000100000000
.....................................................................................................................................................................................T-----------------------------------------------------GGGCTCACTAATGTTCGAATTGTCTCGTA.......................................................................................................................................................................................................................................3011.00100000010000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCATAAGCCGAGCAGAA--------GAT-GAACAT..................2711.00100000000000010000
....................................................................................................................................................................................................................................................................CGTATATGTAGTACCACTGAATGCAACT...............................................................................................................................................................................................................2811.00100000010000000000
...............................................................................................................................................................................................................................................................................TACCACTGAATGCAACTTATTTA.........................................................................................................................................................................................................2311.00100000010000000000
...............................................................................................................................................................................................................................................................TGTCTCGTATATGTAGTACCACTGA.......................................................................................................................................................................................................................2511.00100000000100000000
.................................................................................................................................................................................................................................................................TCTCGTATATGTAGTACCACTGAA......................................................................................................................................................................................................................2411.00100000001000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCATAAGCCGAGCAGAA--------GAT-GAACATG.................2811.00100000000100000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCCATAAGCCGAGCAGAA--------GAT-GAACA...................2711.00100000000000010000
....................................................................................................................................................................................................................................................................................................................................................................................................................................T-----------ACAGGCGAATCCATAAGCCGAGCAGA.....................................2711.00100000010000000000
......................................................................................TTT----CAACGAATCTAGTATGTCATTTT...........................................................................................................................................................................................................................................................................................................................................................................................2611.00100000010000000000
............................................................................................................................................................................................................................................................................................AACTTATTTATGCTCTCCAAATTCACAGA......................................................................................................................................................................................2911.00100000000010000000
.................................................................................................................................................................................AAAGT-----------------------------------------------------GGGCTCACTAATGTTCGAATTGTC............................................................................................................................................................................................................................................2911.00100000010000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGAA--------GAT-GAACATGTT...............1811.00100100000000000000
..........................................................................................................................................................................................................................................................................TGTAGTACCACTGAATGCAACTTATT...........................................................................................................................................................................................................2611.00100000001000000000
......................................................................................................................TCTACGAGTAACGGGTAAAAATACC................................................................................................................................................................................................................................................................................................................................................................2511.00100000000000010000
........................................................................................................................TACGAGTAACGGGTAAAAAT...................................................................................................................................................................................................................................................................................................................................................................2021.00200000200000000000
...............................................................................................................................................................................................................................................TCACTAATGTTCGAATTGTCTCGTA.......................................................................................................................................................................................................................................2511.00100000001000000000
......................................................................................................................TCTACGAGTAACGGGTAAAAATACCATA.............................................................................................................................................................................................................................................................................................................................................................2811.00100000000001000000
..........................................................................................................................................................................................................................................................................TGTAGTACCACTGAATGCAACTT..............................................................................................................................................................................................................2311.00100000010000000000
......................................................................................................................................................................................................................................................TGTTCGAATTGTCTCGTATATGTAGT...............................................................................................................................................................................................................................2611.00100000000010000000
..........................................................................................................................................................................................................................................................................TGTAGTACCACTGAATGCAACT...............................................................................................................................................................................................................2211.00100000010000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................TTCTGCTGCCTAATAATTTGTTTCT...........................................................................2511.00100000000100000000
...........................................................................................................................................TACCATACA-----G----------------------CAAAGT-----------------------------------------------------GGGCTCACTAA.........................................................................................................................................................................................................................................................2711.00100000000001000000
..................................................................................................................................................................................................................................................................CTCGTATATGTAGTACCACTGAATGC...................................................................................................................................................................................................................2611.00100000000010000000
.......................................................................................................................................................................................................................................................................ATATGTAGTACCACTGAATGCAACT...............................................................................................................................................................................................................2511.00100000010000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................TTTCTGCTGCCTAATAATTTGTTTCT...........................................................................2611.00100000000010000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCCATAAGCCGAGCAGA.....................................1811.00100000000001000000
..CTGC---------------------------------------------------CTG-----------------TTACATAATTTT----CAACGAA...........................................................................................................................................................................................................................................................................................................................................................................................................2651.00500000003020000000
.....................................................................................TTTT----CAACGAATCTAGTATGTCATTTT...........................................................................................................................................................................................................................................................................................................................................................................................2711.00100000000000010000
.................................................................................................................................................................................AAAGT-----------------------------------------------------GGGCTCACTAATGTTCGAATTG..............................................................................................................................................................................................................................................2711.00100000000100000000
......................................................................................................................................................................................................................................................................TATATGTAGTACCACTGAATGCAACT...............................................................................................................................................................................................................2611.00100000000100000000
.....................................................................................................................................................................................T-----------------------------------------------------GGGCTCACTAATGTTCGAATTGTCTA..........................................................................................................................................................................................................................................2711.00100000000000010000
................................................................................................................................................TACA-----G----------------------CAAAGT-----------------------------------------------------GGGCTCACTAATGTT.....................................................................................................................................................................................................................................................2611.00100000000001000000
......................................................................................................................................................................................................................................................TGTTCGAATTGTCTCGTATATGTAGTA..............................................................................................................................................................................................................................2711.00100000000000010000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCATAAGCCGAGCAGAA--------GAT-GAA.....................2411.00100000000010000000
......................................................................................................................TCTACGAGTAACGGGTAAAAAT...................................................................................................................................................................................................................................................................................................................................................................2220.50100000000000010000
TTCTGC---------------------------------------------------CTG-----------------TTACATAATTTT----CAACGAA...........................................................................................................................................................................................................................................................................................................................................................................................................2850.40200000000020000000
..............................................................................TACATAATTTT----CAACGAATCTAGTA....................................................................................................................................................................................................................................................................................................................................................................................................2530.33100000010000000000
.........................................................CTG-----------------TTACATAATTTT----CAACGAATCT........................................................................................................................................................................................................................................................................................................................................................................................................2550.20100100000000000000
TTCTGC---------------------------------------------------CTG-----------------TTACATAATTTT----CAACGA............................................................................................................................................................................................................................................................................................................................................................................................................2750.20100000000100000000
TTCTGC---------------------------------------------------CTG-----------------TTACATAATTTT----CAAC..............................................................................................................................................................................................................................................................................................................................................................................................................2550.20100000000010000000
.TCTGC---------------------------------------------------CTG-----------------TTACATAATTTT----CAACGAA...........................................................................................................................................................................................................................................................................................................................................................................................................2750.20100000010000000000
...TGC---------------------------------------------------CTG-----------------TTACATAATTTT----CAACGA............................................................................................................................................................................................................................................................................................................................................................................................................2450.20100000000010000000
..................................................................................................................TTACTCTACGAGTAACGGGTAAAA.....................................................................................................................................................................................................................................................................................................................................................................2480.13100000010000000000
.................................................................................ATAATTTT----CAACGAA...........................................................................................................................................................................................................................................................................................................................................................................................................15190.11200000000011000000
........................................................................................................................TACGAGTAACGGGTAAAA.....................................................................................................................................................................................................................................................................................................................................................................18130.08100000000001000000
TTCTGC---------------------------------------------------CTG-----------------TTACATAATTTT----CAACGAT...........................................................................................................................................................................................................................................................................................................................................................................................................28130.08100000000100000000
...............................................................................................................ATTTTACTCTACGAGT................................................................................................................................................................................................................................................................................................................................................................................16150.07100000000001000000
droSec2
GTGTCCGGATTTAAACGGGGAATTCAAATTAATTAAGAATGAAAACTAGACTTCGGCAAGCCGAAGTTTCTATACTGTTCCATAATTCT----TTA----------------------------------------------------------------------ATAACTTTATTTGCACACACACACTATCATAACTCCATTCGC-----------ATCTATTTTGATTTGTGCAC------------------------------------------------------------------------------------A------------------------ATT------------------------TTA---------GGTAC--ATTTAACAGCTTGCTTGCAAGTTTTGA-----------TTTTGTGTCTTTTTACAGTGCTGCGAACAA-----GAA-GCCAGTCACTGAGAACGCTTACTASizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
.......................................................................................................................................................................................................................................................................................................................................................................................................................CTTGCAAGTTTTGA-----------TTTTGTGT.......................................................2250.2010001
dm3
AAATAG------------GGAAATTAAATTAATCAAGAAAGGAAGCTAGACTTCGGCAAGCCGAAGCTATAAAACCATTA--------------------------------------------------------------------------------------ATAACATTATTTTCA-----------------CTCCATTCGCGTCGAGAGTGAATCTGTTCTGATTTGTGCACA------------AT----------------------TTAACCAAATTT-----A--CGTT------------------------------------------------------------------GTGCCTTCTTGC---------GGTAC--ACTT----GCTCCCTTGCAAGTTTTGA-----------TTTTGTGTCTTTGAACAGTGGTCGGAAAAA----ATTATGGAAACAAAAGTTTTCTGCTGCTASizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
....................................................................................................................................................................................................................................................................................................................................................................................................................................A-----------TTTTGTGTCTTTGAACAGTGGTC........................................2412.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................T----GCTCCCTTGCAAGTTTTGA-----------TTTTGTG........................................................2712.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................TGA-----------TTTTGTGTCTTTGAACAGTGG..........................................2412.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................CGAGAGTGAATCTGTTCTGAT........................................................................................................................................................................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000
.................................................................................................................................................................................................................TCGAGAGTGAATCTGTTCTGATTTG.....................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTGTGTCTTTGAACAGTGGTCG.......................................2411.0010000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................GAACAGTGGTCGGAAAAA----ATTATGGA.....................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGTGTCTTTGAACAGTGGT.........................................2111.0010000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................GAGAGTGAATCTGTTCTGATT.......................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAACAGTGGTCGGAAAAA----ATTATGG......................2611.0010000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................TTAAATTAATCAAGAAAGGAAGCTAGA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTGTCTTTGAACAGTGGTCG.......................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................GAACAGTGGTCGGAAAAA----ATTA.........................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
.....................................AAAGGAAGCTAGACTTCGGCAAA...................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000
........................................................CAAGCCGAAGCTATAAAACCAT.................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................TTGCAAGTTTTGA-----------TTTTGTGTC......................................................2221.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTGTGTCTTTGAACAGTGG..........................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGTGTCTTTGAACAGTGGTC........................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................TCCATTCGCGTCGAGAGTGAATCTGTTC............................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGA-----------TTTTGTGTCTTTGAACAGTGG..........................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................CGTCGAGAGTGAATCTGTTCT...........................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................TCCCTTGCAAGTTTTGA-----------TTTTGTGTC......................................................2620.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................CCCTTGCAAGTTTTGA-----------TTTTGTGTC......................................................2520.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................TCCCTTGCAAGTTTTGA-----------TTTTGTG........................................................2430.3310000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droEre2
GG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTC--ATTTAACAGCTTGCTTTCAATTTTAGA-----------TTTTGTGTCTGTGTACAGTGGTCTGAAACAAACAAAAATGGAAACTAATGTTACCTGTTTCCASizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
No Reads
droYak3
TCTTT------------------------------------------------------------------------------------------C----------------------------------------------------------------------GTGCGTTTGTTTGTAT--ACACA---------------------------------------------------------------------------------------TAAACCGCGCTATGCATCCGCTTTCTCAATCTCTCGCTCT--------CTTATACAAAATTCAAAG--------------------------------TTCC---------GGTAC--ATTTAACAGCTCGCTTACAAGTTTTAA-----------TTTTGTGTCTTCGTACATTAATCTGAA------------------------------------SizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
No Reads
droEug1
GAAAT-------------------GAAATTAAACGAGGTCGGAAACTA-ACTTCGGCAAGCCGAAGTTTTAATACCCTTGCAATTTTCC----CGAA----------------------------------------------------------------------T---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droBia1
AAATT--------------------ATTTAAAACAAGAAAGGAAGTTA-ACTTCGGCAAGCCGAAGTTTGTATACCCTTGCAGTTATAAGAAATAAT------------------------------------------CA-ACTTTA-----GTAAATAATTTTT-TCATTTTATTTTCCCACTAATTT----------------------------------TCC----------------------------------------------------------------------------GATT--------TTTCCTATGACAGCTACATGATATAGTCGTCCGATTTTTATAAAATT-------------TAA---------TTCCT--ATTTCAGAACTAATTAAAAAATGTTG------------TTCTATACCCTTGC------------------------------------------------ASizeHit CountTotal NormTotal
No Reads
droTak1
AA----------------------------------GAAAGGAAGCTA-GCTTCGGCCAGCCGAAGCTTATATACCCTTGCAGATTAAG----TGAA------------------------------------------CA-CCTATA-----G----------------------TTTAGT-----------------------------------------------------GCTCA----------------------------------------------------------------------------------------------CACTTATCGGTGCA--------------GTTCCAGGGA--TTGCAGAATCCTGCGTGCCTATTTAAAATTTTGTTTTTAAGTT------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droEle1
GCACAAAAACTTATGTATTAAATCCACTTTAAACAAGAACAGGTTTAA-ATTTCGGCAAGCCGAAGTTTACATACCATTGAATTCTTAAAA-----A------------------------------------------CA-TCTAAATCTCGATTTATAGCCGTG-C--TTGTTTCAAAACATTGAAGCTATGATGATTTTTAGCTC-----------AATTATTC----------------------------------------------------------------------------GAAC--------GTTCCTATG------------------------ATTTTAATAAAATT-------------AAA---------AGC-------------GTAGTTCAGAAATTTTAAACCACTACTATTTTTATATCCTTGCAGAG---------------------------------------------SizeHit CountTotal NormTotal
No Reads
droRho1
TTTCG-----------------------------------------------------------------------------TAATTCT----TAT--------------------------------------------------------------------CTGTGTTTTCTTTTGTGCATACACTTTAACTTATTT---------------------------------------------------------------------------------------------A--CGTTCCCGCTCTCTTGCTCT--------CTAGTTCTAAGTTCTAAGCGTGCA--------------GTTTCTGCGCTCTTGC---------GGTAC--TTATAACTGCTCGCTTATAAATTTCAA-----------TTCGCTTTCTTGGTACAGTGGTCCCAATAA---------------------------------SizeHit CountTotal NormTotal
No Reads
droFic1
GAATT-------------------CAGTACAAACAAGGAAGGAAGCTA-GCTTCGGCAAGCCGAAGCTTATATACCCTTGCA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droWil2
AAACTA----------------------------------T----GTAACTTTGGGAATGCCGAAATTTATATACCCTTACATATTTTT----CAAA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
No Reads

Generated: 05/19/2015 at 05:28 AM