ID:

dsi_12861

 Coordinate:

2l:4954394-4954543 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-25.6 -25.5 -25.3

Flybase annnotation

intergenic

No Repeatable elements found

Sense Strand Reads

CCGAAAGGGAGCTCATTGTGCGCGCCAAGCTCGAGGATCTGCTGGATCAGGTAGGATAATGTTCAATACCTTGGCGATGCATTTGTAGAGTTGCGACCACTTTCAATAGTTTAAAGTCAAGCAATTATATTGTTTAAAATGAATGGAAGGATCCTTTTGTAGATCTATGTTGTGCTATCATATTTTCACAAAACCTTTCAGTAGAGATTTCTTTGGTTTCAAAACGAAATGTATAGAATTCCACCATAGT
**************************************************....((((((((..(((..((((((...((..(((.(((((.......))))))))..)).....))))))..))))))))))).........(((((((....((((((.((..((((.........))))..)).)))))))))))))************************************************** 		Read size # Mismatch Hit Count Total Norm Total M025
embryo
 M024
male body		 SRR902008
ovaries
 M053
female body
 SRR553485
Chicharo_3 day-old ovaries
 M023
head
 SRR553487
NRT_0-2 hours eggs
 SRR553488
RT_0-2 hours eggs
 GSM343915
embryo
 SRR553486
Makindu_3 day-old ovaries
...............................CGAGGATCTGCTGGATCAGAAAC.................................................................................................................................................................................................... 23 3 2 2.50 5 5 0 0 0 0 0 0 0 0 0
.......................GCCAAGCTCGAGGATCTGCTGGAT........................................................................................................................................................................................................... 24 0 1 2.00 2 0 0 2 0 0 0 0 0 0 0
..............................................................................GCATTTGTAGAGTTGCGACCA....................................................................................................................................................... 21 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0
.......................GCCAAGCTCGAGGATCTGCTGGATCAG........................................................................................................................................................................................................ 27 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0
.........................CAAGCTCGAGGATCTGCTGGATCG......................................................................................................................................................................................................... 24 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0
.............................CTCGAGGATCTGCTGGATCAGAAAC.................................................................................................................................................................................................... 25 3 1 1.00 1 0 1 0 0 0 0 0 0 0 0
........................................................................................................................................................CCTTTTGTAGATCTATGTTGTGCG.......................................................................... 24 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0
.......................GCCAAGCTCGAGGATCTGCTGGATC.......................................................................................................................................................................................................... 25 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
..........................AAGCTCGAGGATCTGCTG.............................................................................................................................................................................................................. 18 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
................................GAGGATCTGCTGGATCAG........................................................................................................................................................................................................ 18 0 2 0.50 1 0 0 0 0 0 1 0 0 0 0
.............................................................................................................................................................................................................................AATCGAAATGTATAGA............. 16 1 7 0.14 1 0 0 0 0 0 0 1 0 0 0
....................................................................................................................................................................................TATTTTGACCAAACCTTCCAG................................................. 21 3 10 0.10 1 0 0 0 0 0 0 0 0 1 0
..............................................................................................................................................................GTAGAACTATGATGTGC........................................................................... 17 2 10 0.10 1 0 0 0 0 0 0 0 1 0 0
.......................................................................TGGCGATGTATATGTACAGT............................................................................................................................................................... 20 3 14 0.07 1 0 0 0 0 0 0 1 0 0 0
...............................CGAGGATCTGCTGGACGA......................................................................................................................................................................................................... 18 2 20 0.05 1 0 0 0 0 0 0 0 0 0 1

Anti-sense strand reads

GGCTTTCCCTCGAGTAACACGCGCGGTTCGAGCTCCTAGACGACCTAGTCCATCCTATTACAAGTTATGGAACCGCTACGTAAACATCTCAACGCTGGTGAAAGTTATCAAATTTCAGTTCGTTAATATAACAAATTTTACTTACCTTCCTAGGAAAACATCTAGATACAACACGATAGTATAAAAGTGTTTTGGAAAGTCATCTCTAAAGAAACCAAAGTTTTGCTTTACATATCTTAAGGTGGTATCA
**************************************************....((((((((..(((..((((((...((..(((.(((((.......))))))))..)).....))))))..))))))))))).........(((((((....((((((.((..((((.........))))..)).)))))))))))))************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR902008
ovaries
 SRR553488
RT_0-2 hours eggs
 SRR618934
dsim w501 ovaries
 SRR553486
Makindu_3 day-old ovaries
....................................................................................................................................AAATTTTTCATACCTTCCTA.................................................................................................. 20 2 1 2.00 2 2 0 0 0
..................................................................ATGGTACCGCTACGTAG....................................................................................................................................................................... 17 2 4 0.25 1 0 1 0 0
.......................................................................................................................................................................................AAAGCGTTTTGGAAAG................................................... 16 1 13 0.08 1 0 0 1 0
........................................................................................................................................................GGGAACCATCTAGATACAT............................................................................... 19 3 14 0.07 1 0 0 0 1
...................................................................TGGAGCGGCTACGTAA....................................................................................................................................................................... 16 2 20 0.05 1 0 1 0 0
..............................................................................................ATGTTGAAAGTTATCAA........................................................................................................................................... 17 2 20 0.05 1 0 0 1 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim2 2l:4954344-4954593 + dsi_12861 CCGAAAGGGAGCTCATTGTGCGCGCCAAGCTCGAGGATCTGCTGGATCAGGTAGGATA-ATGTTCAAT-----------------ACCT-TGGCGATGCATTTGTAGAGT--TGCGACCACTTTCAATAGTTTAAAG--TCAAGCAATT----------------------------------------ATATT-G-TTTAAAATGAATGGAAGGATCCTTTTGTAG--------ATCT----------------------------------ATG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTGTGCTATCATATTTTCACAAAACCTT-----------------------------------------------------------------------------TCAGTAGAGATTTCTT-------------------TGGTT-TC------A--AAACGAAATGTATAGAATTCCACC-------------------------------------------------------ATAG--T
droSec2 scaffold_5:3227585-3227845 + CCGAAAGGGAGCTCATTGTGCGCGCCAAGCTCGAGGATCTGCTGGATCAGGTAGGATA-ACGTTCAAT-----------------ACCT-TGGCGATGCATTTGTAGAGT--TGCGACCACTTTTAATAGTTTAAAG--TCAAGCAATT----------------------------------------ATATT-G-TTTCAAATGAATGGAAGGATCCTTTTGTAG--------ATCT----------------------------------ATG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTGTGCTATTATATATTTTCCAAACCTTTTTAGA------------------------------------------------------------------CTTATTCAGTAGAGATTTGTT-------------------TGGTT-TC------A--AAAGGAAATGTATTGAATTCCACC-------------------------------------------------------ATAG--T
dm3 chr2L:5140872-5141120 + CCGAAAGGGAGCTCATTGTGCGCGCCAAGCTCGAGGATCTGCTGGATCAGGTAGGATA-ATGTTTAAT-----------------GCCT-TTGCGATGCATTTGTAGAGT--TGCGACCACTTTCAATAGTTCAAAG--TCAAGCAATT---------------------------------------------------AAAATGAATGGAAGAATCATTTTGTAG--------ATCT----------------------------------ATG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTGTTCTATCATATTTTCTTAAAACCTTTTTAGA------------------------------------------------------------------TGTAATCAGTAGAGATTATGC-T-----------------TGATT-TC------A--AAA-------------------CC------TATTTTCTTTTTT-----------AG-----------------------ATAG--C
droEre2 scaffold_4929:5221948-5222190 + CCGAAAGGGAGCTCATTGTGCGCGCCAAGCTCGAGGATCTGCTGGATCAGGTAGGCTA-CCGTTTACA-----------------CC-C-TTGCGATGCCTTTGTAGATT--TGCGACCACTTTCCTTAATTCAAAG--TCAAGCAATT----------------------------------------ATATT-G-TTTAAAACGAATAGAAGCATCCTTGTGTAG--------ATCT----------------------------------ATG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAATGC--------------------CTTTCAGA------------------------------------------------------------------TCTAAAGAGTAGAATTTTTGC-T-----------------TG-TT-T--------------GAAATGTATTTAATTACACCT-TTT-T---------------------TAAA-----------------------ATAT--T
droYak3 2L:10383212-10383455 - CCGAAAGGGAGCTCATTGTGCGCGCTAAGCTCGAGGATCTGCTGGATCAGGTAGGATG-ACGTTTATA-----------------CC-T-TTGCGATGCATTTGTAGAGT--TGCGACCACTTTCCATAGTTCAAAG--TCAAGCAATC----------------------------------------ATAAT-G-TTTATAAAGAATGGAAGAATCCTTGTGTAT--------ATCT----------------------------------ATG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTATGC---------------------CTTTAGA------------------------------------------------------------------TCCAAAGAGTAGAATTTTTTC-T-----------------TG-TTTTT-------------GAAATGTATTAAATTATACCT-TTC-T---------------------TTTA-----------------------ACAT--T
droEug1 scf7180000409005:1030132-1030359 + CCGAAAGGGAACTCATTGTGCGCGCCAAGCTGGAAGATCTGCTGGATCAGGTATGATA-TCGATGAAT--------------ATATCTT-TTGCGATGCATTTGTAGTTT--TGTTATCA------AAAATTCACAA-ATTCTGTA--------------------------------------------TAATTT-TTGAAAATTAATGGATGGACTC---TATGAC--AGTAGTTTGA-T--------------------------------TG-------------------------------------------------------------------------------------------------------------------------------------------------------CTATACAA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATTTTCTTACTTTGACTTTTA---AGCATAAACGTATTATTCCAAATGATAGATT
droBia1 scf7180000302261:583173-583351 + CCGAAAGGGAGCTCATTGTGCGCGCCAAGTTGGAGGATCTGCTGGATCAGGTAGGAC--CCGTTTAAT-----------------CCTTATTGCGATGCATTTGTAGTA--------TCCCCTTTAATACTCAAAAT--TTATGTACTT----------------------------------------ATCGATT-TTCAAAACGAATGGAAATATTT---CGTAGC--AGTAGCTTG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A--AAA---------------------------------------------------------------------CATAGTAATG---C
droTak1 scf7180000415704:384561-384914 - CCGAAAGGGAGCTTATTGTGCGCGCCAAGCTCGAAGATCTGCTGGATCAGGTAGGACCAACATTGAAT-----------------CCATAGTGCGATGCTCTAGTAGTTT--------CATTCTTAATAGTTCAAAG--TTCTGTAATT----------------------------------------TTAATTT-CTTAAAAAGAATGGAAGTATTG---TGTAGTATAGTAGTTAGA-CTGCTTTTAGCAGTAA--------------------------------ACTTAA---------ATATCTTAAAT---------ATTGAAATTATATCAGTACGAAAACATTTAAAACAGTGGTGGCCAGCA-CCACTGCTTTACAGCGTACGTGTGCATCGAAACGCT------------------------------------G----------------------------------------------G----------TA------GAGCAG-------------------------------------------------------------------------CGGCAGAGAAATTGC-C-----------------TGTGC-GCTGTTTCT--GCTGG-----------------CC--------------ACCATTGA-TT---TAAAGC---------------------GTAG--A
droEle1 scf7180000491273:73566-73825 - CCGAAAGGGAGCTCATTGTGCGCGCCAAGCTCGAGGATCTGCTGGATCAGGTAGGATA-ACGTTGAAT-----------------CCTT-----ATTGCATTTGTAGTCT--TGCGATCACTTTTGGTAGTTCAAAA--TTC-----------------------------------------------ACATTTT-TAAAAAAAGAATGGCAGAATATATTA--------GTAGTT-T-------------------------------------CTGTTG---------------GCTTTGTTTAGCTT------------------------------------------------------------------------------------------------TGTAGTTTTCTTTTGAATAGCAAAAAAA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AATTTTACTTTTTC-TTTTTACTTTTTT--------G---AACAAAAATATGAAAAGCCTAGAAATGC--C
droRho1 scf7180000779577:76787-77000 - CTGAAAGGGAGCTTATTGTGCGCGCCAAGCTCGAAGATCTGCTGGATCAGGTAGGATA-ACGTTGAAT-----------------CCTT-----AATGCATTTGTAGTCT--TGTTATCACTTTTAGTAGTTCAAAA--TGATGTAATC----------------------------------------ACATTTT-TCCAAAATGAATGGAAGGTTATATAA--------GTAGATCTA-A--------------------------------TGCTGCCA---------------GCTTTATTTATCTT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AATAGTATTATTT-TGC-------------------CGATT-TC------A--AAA-----------------------------------------------------------------------------------
droFic1 scf7180000453842:1099489-1099763 - CCGAAAGGGAGCTCATTGTGCGCGCCAAGCTCGAGGATCTGCTGGATCAGGTAGGATA-GCATTGAAT-----------------CCCTACAGCTATGCATTTGTAGCCT--TGTGTTCACATTTAGTAGATTGAAA--TTATTTCA-------------------------------------------TATATTTCCAAAAAGGAATGGAAGGATTG---TGTATC--AATATATCGAACTTCATTTATTTGTAATATCTTGAGTAGCTTAGTA----TT-------GTTCAC---------ATATCTTCAAC---------ATCTATATATTT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A-----------------TGATA-AA------A--AAA-------------------CC-----GTAATTTCTTTTTT--------GTAAA-----------------------AAAC--A
droKik1 scf7180000302643:721032-721343 - CCGAAAGGGAGCTTATTGTGCGCGCCAAGCTCGAGGATCTGCTGGATCAGGTAGGATT-AAGGA---TTTGT----------TT-ATAT-TTCTATTGAATTTGTAGTTT--TGTGAACACATT--GTAGTTGAAACT-TGAAACA-G---------------------------------------------------AAAAAGAAACGGAAAGATTT--TA--------GTAGCT-T-------------------------------------A---TG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------G--------------------CTTTTAGATTTAAATATTTACATTCTACATTTCTACATTTACATTCTTAAATTGTAAATCCTAAAAATATTCTTTCTTATTAGTAGAGAAATTTATTTCAATATTTTAAATAAGTAGTT-TC------ATTAAACAAATTTCATAGATCTTCCCT-------------------------------------------------------TTCT--T
droAna3 scaffold_12916:10020912-10021193 - CCGAGAGGGAGCTTATTGTACGCGCCAAGCTCGAAGATCTGCTGGATCAGGTAATACT----CTCAGC-----------------CATTTTTGCATTGCATTTGTAGTTTTTTGCAAACACTTC---------AAAG--TAG-----T-GGCAAATTAATTTAATTTATTTTTGGTAAGAGAATGGAAT-------------------------GATG--------------TAGT-CT-------------------------------------ATTTTGGAGCTATTTTTAA---------TTATTTTGAATTTGATTTTAATTTAAATTATTTTATTTTAAAGAAA--------------------TACCTACTACTATATT----ACTTATTTATTAGATCTTT-----------------------------------------------------------------------------------A----------GA------AAACATC------------------------------------------------------------------TCCAAAGAG----------------------------------------------------------------------------------------------------------------------------------T--T
droBip1 scf7180000396580:1012592-1012810 + CCGAAAGGGAGCTTATTGTGCGCGCTAAGCTCGAGGATCTGCTGGATCAGGTAATAC----TTTCAGG-----------------CATTATTGCATTGCTTATGTAGTTTTTTGCAAACACTTTCAA---------G--TAG-----T-GGCAAATTAATTTCATTTATTTTTGGCAAGAAAATGGAG--------------------------GATATG--TCCA--------------------------------------------------ATCTTGGGGAAAT-TTTAATTGATTTATT------------------------------------------------------------------------------------------------AAATCTTG-----------------------------------------------------------------------------------A----------A-----------ATC------------------------------------------------------------------TCCAA-------------------------------------------------------------------AAGTTTACT--------------------------------------------------------TAT--T
dp5 4_group3:2762381-2762543 - CCGAACGTGAATTGATTGTGCGCGCCAAGCTTGAAGATCTGCTGGATCAGGTAGGAAT-CTGGA---TA----------------GAT------TATAGCTTTGTAGTTT--CGTGATCCTTTTCCT---------T--TCAAGTAGTT----------------------------------------C--TT-G-TTTAA-------GGAAGCAT---TTTGTAG--------ATTT----------------------------------GTT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCCTGCTAA----------GA------CCATAGT------------------------------------------------------------------TCCA-------------------------------------------------------------------------------------------------------------------------------------------
droPer2 scaffold_1:4246966-4247138 - CCGAACGTGAATTGATTGTGCGCGCCAAGCTTGAAGATCTGCTGGATCAGGTAGGAAT-CTGGA---TAGAT---------AAT-AACT-T-GATGTTTGTTTGTAGATG--TGTGATCCTTTTACT---------T--TCAAGTAGTT----------------------------------------A--TT-C-TTTAA-------GGAAGCAT---TTTGTAG--------ATTT----------------------------------GTT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCCTGCTAA----------GA------CCATAGT------------------------------------------------------------------TCCA-------------------------------------------------------------------------------------------------------------------------------------------
droWil2 scf2_1100000004585:1141815-1142036 - CCGAACGTGAATTGATTGTGCGCGCCAAATTGGAAGATCTGCTGGATCAGGTAAGAAT-AT---CAACACAATCAAAAGAAAATAATAAAGCACGTTGCATTTGTAGTC----GAAATTA-----------TTAAAG--TTAAGTGACA----------------------------------------ATATT-------AAATGAATAGATGGAACAAT------------------A-A--------------------------------TG-------------------------------------------------------------------------------------------------------------------------------------------------------CAAAAAGGACAATCTTTTCATAGAATTTCGTCATAAATGAATTGTTTTTTCATCGATTCCTG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CC-------------------------------------------------------------A
droVir3 scaffold_12963:6459497-6459561 - CCGAACGTGAACTGATCGTGCGCGCCAAGCTGGAAGATCTGCTGGATCAGGTGGGTTA-TTTAA---T-----------------A-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droMoj3 scaffold_6500:25605229-25605295 - CCGAACGTGAACTGATGGTGCGCGCCAAGCTTGAAGATCTGCTGGATCAGGTGGGTTATATATTCAA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droGri2 scaffold_15252:9687487-9687544 - CCGAACGTGAATTGATTGTCCGCGCCAAGCTCGAAGATCTGCTGGATCAGGTGGGTTA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
CCGAAAGGGAGCTCATTGTGCGCGCCAAGCTCGAGGATCTGCTGGATCAGGTAGGATA-ATGTTCAAT-----------------ACCT-TGGCGATGCATTTGTAGAGT--TGCGACCACTTTCAATAGTTTAAAG--TCAAGCAATT----------------------------------------ATATT-G-TTTAAAATGAATGGAAGGATCCTTTTGTAG--------ATCT----------------------------------ATG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTGTGCTATCATATTTTCACAAAACCTT-----------------------------------------------------------------------------TCAGTAGAGATTTCTT-------------------TGGTT-TC------A--AAACGAAATGTATAGAATTCCACC-------------------------------------------------------ATAG--TSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
.......................GCCAAGCTCGAGGATCTGCTGGAT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2412.00200000000000020000
.................................................................................................GCATTTGTAGAGT--TGCGACCA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100010000000000000
.......................GCCAAGCTCGAGGATCTGCTGGATCAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.00100000010000000000
.........................CAAGCTCGAGGATCTGCTGGATCG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.00100100000000000000
.........................................................................................................................................................................................................................CCTTTTGTAG--------ATCT----------------------------------ATG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTGTGCG............................................................................................................................................................................................................................................2411.00101000000000000000
.......................GCCAAGCTCGAGGATCTGCTGGATC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.00100100000000000000
..........................AAGCTCGAGGATCTGCTG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.00100100000000000000
................................GAGGATCTGCTGGATCAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1820.50110000000000000000
droSec2
CCGAAAGGGAGCTCATTGTGCGCGCCAAGCTCGAGGATCTGCTGGATCAGGTAGGATA-ACGTTCAAT-----------------ACCT-TGGCGATGCATTTGTAGAGT--TGCGACCACTTTTAATAGTTTAAAG--TCAAGCAATT----------------------------------------ATATT-G-TTTCAAATGAATGGAAGGATCCTTTTGTAG--------ATCT----------------------------------ATG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTGTGCTATTATATATTTTCCAAACCTTTTTAGA------------------------------------------------------------------CTTATTCAGTAGAGATTTGTT-------------------TGGTT-TC------A--AAAGGAAATGTATTGAATTCCACC-------------------------------------------------------ATAG--TSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
.......................GCCAAGCTCGAGGATCTGCTGGAT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010010
...........................................................................................................................................................................................................................................ATCT----------------------------------ATG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTGTGCTATTA........................................................................................................................................................................................................................................1811.0010010
..........................AAGCTCGAGGATCTGCTGGATCA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0011000
...............TTGTGCGCGCCAAGCTCGAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0011000
dm3
CCGAAAGGGAGCTCATTGTGCGCGCCAAGCTCGAGGATCTGCTGGATCAGGTAGGATA-ATGTTTAAT-----------------GCCT-TTGCGATGCATTTGTAGAGT--TGCGACCACTTTCAATAGTTCAAAG--TCAAGCAATT---------------------------------------------------AAAATGAATGGAAGAATCATTTTGTAG--------ATCT----------------------------------ATG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTGTTCTATCATATTTTCTTAAAACCTTTTTAGA------------------------------------------------------------------TGTAATCAGTAGAGATTATGC-T-----------------TGATT-TC------A--AAA-------------------CC------TATTTTCTTTTTT-----------AG-----------------------ATAG--CSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
.......................GCCAAGCTCGAGGATCTGCTGG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2214.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000001000000
......................CGCCAAGCTCGAGGATCTGCTGG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2312.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000
...........................AGCTCGAGGATCTGCTGG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1812.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000
........GAGCTCATTGTGCGCGCCAAGCTCGAGG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................GCTGGATCAGGTAGGATA-............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000
....................CGCGCCAAGCTCGAGGATCTG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000
......................CGCCAAGCTCGAGGATCTGCTGGA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000
.......................GCCAAGCTCGAGGATCTGCTGGATCAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000
...............................CGAGGATCTGCTGGATCAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................GAGGATCTGCTGGATCAGGTG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..GAAAGGGAGCTCATTGTGC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000
...............................CGAGGATCTGCTGGATCAGGTGCA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....AGGGAGCTCATTGTGCGCGCCAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........GCTCATTGTGCGCGCCAA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................ATTTTGTAG--------ATCT----------------------------------ATG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTGTT..............................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................GTAGGATA-ATGTTTAAT-----------------GCCT-.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................CGCCAAGCTCGAGGATCTGC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000
................................GAGGATCTGCTGGATCAGGTGCA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2320.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................AGGATCTGCTGGATC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1520.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droEre2
CCGAAAGGGAGCTCATTGTGCGCGCCAAGCTCGAGGATCTGCTGGATCAGGTAGGCTA-CCGTTTACA-----------------CC-C-TTGCGATGCCTTTGTAGATT--TGCGACCACTTTCCTTAATTCAAAG--TCAAGCAATT----------------------------------------ATATT-G-TTTAAAACGAATAGAAGCATCCTTGTGTAG--------ATCT----------------------------------ATG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAATGC--------------------CTTTCAGA------------------------------------------------------------------TCTAAAGAGTAGAATTTTTGC-T-----------------TG-TT-T--------------GAAATGTATTTAATTACACCT-TTT-T---------------------TAAA-----------------------ATAT--TSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
.....................GCGCCAAGCTCGAGGATCT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1912.0021000100
.................................................................................................................................................................................................T-G-TTTAAAACGAATAGAAGC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000010
................TGTGCGCGCCAAGCTCGAGGAT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0011000000
.............................................................................................................................................................................................................................................CT----------------------------------ATG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAATGC--------------------CTTTCAGA------------------------------------------------------------------T..............................................................................................................................................2011.0011000000
................................GAGGATCTGCTGGATCAGGT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000100
......................CGCCAAGCTCGAGGATCTGCT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0011000000
droYak3
CCGAAAGGGAGCTCATTGTGCGCGCTAAGCTCGAGGATCTGCTGGATCAGGTAGGATG-ACGTTTATA-----------------CC-T-TTGCGATGCATTTGTAGAGT--TGCGACCACTTTCCATAGTTCAAAG--TCAAGCAATC----------------------------------------ATAAT-G-TTTATAAAGAATGGAAGAATCCTTGTGTAT--------ATCT----------------------------------ATG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTATGC---------------------CTTTAGA------------------------------------------------------------------TCCAAAGAGTAGAATTTTTTC-T-----------------TG-TTTTT-------------GAAATGTATTAAATTATACCT-TTC-T---------------------TTTA-----------------------ACAT--TSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
.............................CTCGAGGATCTGCTGGATC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00100100000000
...AAAGGGAGCTCATTGTGCGCGCT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.00100000010000
.........................TAAGCTCGAGGATCTGCT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.00100100000000
........................CTAAGCTCGAGGATCTGCTGGAT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.00100000010000
.........................TAAGCTCGAGGATCTGCTGGATCAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.00100100000000
droEug1
CCGAAAGGGAACTCATTGTGCGCGCCAAGCTGGAAGATCTGCTGGATCAGGTATGATA-TCGATGAAT--------------ATATCTT-TTGCGATGCATTTGTAGTTT--TGTTATCA------AAAATTCACAA-ATTCTGTA--------------------------------------------TAATTT-TTGAAAATTAATGGATGGACTC---TATGAC--AGTAGTTTGA-T--------------------------------TG-------------------------------------------------------------------------------------------------------------------------------------------------------CTATACAA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATTTTCTTACTTTGACTTTTA---AGCATAAACGTATTATTCCAAATGATAGATTSizeHit CountTotal NormTotal
No Reads
droBia1
CCGAAAGGGAGCTCATTGTGCGCGCCAAGTTGGAGGATCTGCTGGATCAGGTAGGAC--CCGTTTAAT-----------------CCTTATTGCGATGCATTTGTAGTA--------TCCCCTTTAATACTCAAAAT--TTATGTACTT----------------------------------------ATCGATT-TTCAAAACGAATGGAAATATTT---CGTAGC--AGTAGCTTG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A--AAA---------------------------------------------------------------------CATAGTAATG---CSizeHit CountTotal NormTotal
No Reads
droTak1
CCGAAAGGGAGCTTATTGTGCGCGCCAAGCTCGAAGATCTGCTGGATCAGGTAGGACCAACATTGAAT-----------------CCATAGTGCGATGCTCTAGTAGTTT--------CATTCTTAATAGTTCAAAG--TTCTGTAATT----------------------------------------TTAATTT-CTTAAAAAGAATGGAAGTATTG---TGTAGTATAGTAGTTAGA-CTGCTTTTAGCAGTAA--------------------------------ACTTAA---------ATATCTTAAAT---------ATTGAAATTATATCAGTACGAAAACATTTAAAACAGTGGTGGCCAGCA-CCACTGCTTTACAGCGTACGTGTGCATCGAAACGCT------------------------------------G----------------------------------------------G----------TA------GAGCAG-------------------------------------------------------------------------CGGCAGAGAAATTGC-C-----------------TGTGC-GCTGTTTCT--GCTGG-----------------CC--------------ACCATTGA-TT---TAAAGC---------------------GTAG--ASizeHit CountTotal NormTotal
No Reads
droEle1
CCGAAAGGGAGCTCATTGTGCGCGCCAAGCTCGAGGATCTGCTGGATCAGGTAGGATA-ACGTTGAAT-----------------CCTT-----ATTGCATTTGTAGTCT--TGCGATCACTTTTGGTAGTTCAAAA--TTC-----------------------------------------------ACATTTT-TAAAAAAAGAATGGCAGAATATATTA--------GTAGTT-T-------------------------------------CTGTTG---------------GCTTTGTTTAGCTT------------------------------------------------------------------------------------------------TGTAGTTTTCTTTTGAATAGCAAAAAAA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AATTTTACTTTTTC-TTTTTACTTTTTT--------G---AACAAAAATATGAAAAGCCTAGAAATGC--CSizeHit CountTotal NormTotal
No Reads
droRho1
CTGAAAGGGAGCTTATTGTGCGCGCCAAGCTCGAAGATCTGCTGGATCAGGTAGGATA-ACGTTGAAT-----------------CCTT-----AATGCATTTGTAGTCT--TGTTATCACTTTTAGTAGTTCAAAA--TGATGTAATC----------------------------------------ACATTTT-TCCAAAATGAATGGAAGGTTATATAA--------GTAGATCTA-A--------------------------------TGCTGCCA---------------GCTTTATTTATCTT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AATAGTATTATTT-TGC-------------------CGATT-TC------A--AAA-----------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droFic1
CCGAAAGGGAGCTCATTGTGCGCGCCAAGCTCGAGGATCTGCTGGATCAGGTAGGATA-GCATTGAAT-----------------CCCTACAGCTATGCATTTGTAGCCT--TGTGTTCACATTTAGTAGATTGAAA--TTATTTCA-------------------------------------------TATATTTCCAAAAAGGAATGGAAGGATTG---TGTATC--AATATATCGAACTTCATTTATTTGTAATATCTTGAGTAGCTTAGTA----TT-------GTTCAC---------ATATCTTCAAC---------ATCTATATATTT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A-----------------TGATA-AA------A--AAA-------------------CC-----GTAATTTCTTTTTT--------GTAAA-----------------------AAAC--ASizeHit CountTotal NormTotal
No Reads
droKik1
CCGAAAGGGAGCTTATTGTGCGCGCCAAGCTCGAGGATCTGCTGGATCAGGTAGGATT-AAGGA---TTTGT----------TT-ATAT-TTCTATTGAATTTGTAGTTT--TGTGAACACATT--GTAGTTGAAACT-TGAAACA-G---------------------------------------------------AAAAAGAAACGGAAAGATTT--TA--------GTAGCT-T-------------------------------------A---TG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------G--------------------CTTTTAGATTTAAATATTTACATTCTACATTTCTACATTTACATTCTTAAATTGTAAATCCTAAAAATATTCTTTCTTATTAGTAGAGAAATTTATTTCAATATTTTAAATAAGTAGTT-TC------ATTAAACAAATTTCATAGATCTTCCCT-------------------------------------------------------TTCT--TSizeHit CountTotal NormTotal
No Reads
droAna3
CCGAGAGGGAGCTTATTGTACGCGCCAAGCTCGAAGATCTGCTGGATCAGGTAATACT----CTCAGC-----------------CATTTTTGCATTGCATTTGTAGTTTTTTGCAAACACTTC---------AAAG--TAG-----T-GGCAAATTAATTTAATTTATTTTTGGTAAGAGAATGGAAT-------------------------GATG--------------TAGT-CT-------------------------------------ATTTTGGAGCTATTTTTAA---------TTATTTTGAATTTGATTTTAATTTAAATTATTTTATTTTAAAGAAA--------------------TACCTACTACTATATT----ACTTATTTATTAGATCTTT-----------------------------------------------------------------------------------A----------GA------AAACATC------------------------------------------------------------------TCCAAAGAG----------------------------------------------------------------------------------------------------------------------------------T--TSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
.......................GCCAAGCTCGAAGATCTGCTGGATCAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.001000001
droBip1
CCGAAAGGGAGCTTATTGTGCGCGCTAAGCTCGAGGATCTGCTGGATCAGGTAATAC----TTTCAGG-----------------CATTATTGCATTGCTTATGTAGTTTTTTGCAAACACTTTCAA---------G--TAG-----T-GGCAAATTAATTTCATTTATTTTTGGCAAGAAAATGGAG--------------------------GATATG--TCCA--------------------------------------------------ATCTTGGGGAAAT-TTTAATTGATTTATT------------------------------------------------------------------------------------------------AAATCTTG-----------------------------------------------------------------------------------A----------A-----------ATC------------------------------------------------------------------TCCAA-------------------------------------------------------------------AAGTTTACT--------------------------------------------------------TAT--TSizeHit CountTotal NormTotal
No Reads
dp5
CCGAACGTGAATTGATTGTGCGCGCCAAGCTTGAAGATCTGCTGGATCAGGTAGGAAT-CTGGA---TA----------------GAT------TATAGCTTTGTAGTTT--CGTGATCCTTTTCCT---------T--TCAAGTAGTT----------------------------------------C--TT-G-TTTAA-------GGAAGCAT---TTTGTAG--------ATTT----------------------------------GTT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCCTGCTAA----------GA------CCATAGT------------------------------------------------------------------TCCA-------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
........GAATTGATTGTGCGCGCCAAGCTC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010010000000
.......................GCCAAGCTTGAAGATCTGCT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010100000000
.............GATTGTGCGCGCCAAGCTT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010010000000
................................................................................................................................................TAGTT----------------------------------------C--TT-G-TTTAA-------GGAAGC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010100000000
.......................GCCAAGCTTGAAGATCTGCTGG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000100000
.....CGTGAATTGATTGTGCGC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000100000
droPer2
CCGAACGTGAATTGATTGTGCGCGCCAAGCTTGAAGATCTGCTGGATCAGGTAGGAAT-CTGGA---TAGAT---------AAT-AACT-T-GATGTTTGTTTGTAGATG--TGTGATCCTTTTACT---------T--TCAAGTAGTT----------------------------------------A--TT-C-TTTAA-------GGAAGCAT---TTTGTAG--------ATTT----------------------------------GTT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCCTGCTAA----------GA------CCATAGT------------------------------------------------------------------TCCA-------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
......GTGAATTGATTGTGCGCG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1813.003300000
..GAACGTGAATTGATTGTGCGC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2112.002000002
...............................TGAAGATCTGCTGGATCAGGT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001100000
........GAATTGATTGTGCGCGCCAAGCT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001001000
................................GAAGATCTGCTGGATCAGGT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001010000
.............GATTGTGCGCGCCAAGCTTGAA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001000001
....................CGCGCCAAGCTTGAAGATCTGCTG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.001010000
.......................GCCAAGCTTGAAGATCTGCTGG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001001000
................................GAAGATCTGCTGGATCAGC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1920.501100000
droWil2
CCGAACGTGAATTGATTGTGCGCGCCAAATTGGAAGATCTGCTGGATCAGGTAAGAAT-AT---CAACACAATCAAAAGAAAATAATAAAGCACGTTGCATTTGTAGTC----GAAATTA-----------TTAAAG--TTAAGTGACA----------------------------------------ATATT-------AAATGAATAGATGGAACAAT------------------A-A--------------------------------TG-------------------------------------------------------------------------------------------------------------------------------------------------------CAAAAAGGACAATCTTTTCATAGAATTTCGTCATAAATGAATTGTTTTTTCATCGATTCCTG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CC-------------------------------------------------------------ASizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
......GTGAATTGATTGTGCGCGCC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00110000
.................GTGCGCGCCAAATTGGAAGATCTGC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.00100100
............TGATTGTGCGCGCCAAATTGGAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.00100001
........................CCAAATTGGAAGATCTGC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.00100010
...........................AATTGGAAGATCTGCTGGATCAGC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.00100100
..........ATTGATTGTGCGCGCCAAATTGGAA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.00100010
.......TGAATTGATTGTGCGCGCCAA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100010
........GAATTGATTGTGCGCGCCAA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00100010
.......TGAATTGATTGTGCGCGCCA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00100010
......................CGCCAAATTGGAAGATCTGC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00100100
...........TTGATTGTGCGCGCCAAATTGGAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.00100100
...........TTGATTGTGCGCGCCAAATTGGAAGA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.00100100
droVir3
CCGAACGTGAACTGATCGTGCGCGCCAAGCTGGAAGATCTGCTGGATCAGGTGGGTTA-TTTAA---T-----------------A-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
.......................GCCAAGCTGGAAGATCTGCTGG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2212.002000000000000010000000000000000000000000000000000000000000001000
.....................GCGCCAAGCTGGAAGATCTGCT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001000000000000000000000000000000000000000000000000000000000000010
..........................AAGCTGGAAGATCTGCTGGATC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001010000000000000000000000000000000000000000000000000000000000000
........................CCAAGCTGGAAGATCTGCTGG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000000000000000000000000000000010000000000000000000000000000000
............................GCTGGAAGATCTGCTGGATC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001010000000000000000000000000000000000000000000000000000000000000
..GAACGTGAACTGATCGTGCGC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000000000000000100000000000000000000000000000000000000000000000
.......................GCCAAGCTGGAAGATCTGCT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001000000000000000000000000000000000000000000000000000000000001000
droMoj3
CCGAACGTGAACTGATGGTGCGCGCCAAGCTTGAAGATCTGCTGGATCAGGTGGGTTATATATTCAA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
.............GATGGTGCGCGCCAAGCTTGAAGA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.001100000
.............GATGGTGCGCGCCAAGCTT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001100000
...AACGTGAACTGATGGTGCG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001100000
droGri2
CCGAACGTGAATTGATTGTCCGCGCCAAGCTCGAAGATCTGCTGGATCAGGTGGGTTA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads

Generated: 05/19/2015 at 04:56 AM