ID:

dsi_12853

 Coordinate:

3r:20260390-20260539 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-12.3 -12.2 -12.2

Flybase annnotation

CDS [3r_20260570_20260673_+]; five_prime_UTR [3r_20260540_20260569_+]; exon [3r_20260540_20260673_+]; intron [3r_20260188_20260539_+]

No Repeatable elements found

Sense Strand Reads

--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
TTTTGTATAAATACATATTAGGCTATGAGTGTGTGCGTGCTAGGGCCAAACAGCTGATTCTGCCTAGCTGCCACCTGATTTGTGGGGGGTGGGAGTGGGGCTGGGGCTGTGGTATTCTGTATGCTCGCGATGATCTCATTGTGTTGGAATCGGAGCAAAAGCTAAATCAACTTGACATGTGTTCTTCTGCTCCTGTGTAGCTACCTAGTGTTGGAGGATACGGAGGAGCAATGGGCAAGGATCAGCATTT
**********************************************************************************.....(((((((.....((..(((((((((....))))).)))))).....))))))).************************************************************************************************************* 		Read size # Mismatch Hit Count Total Norm Total M024
male body		 M053
female body
 M023
head
 SRR618934
dsim w501 ovaries
 M025
embryo
 SRR553486
Makindu_3 day-old ovaries
 SRR902009
testis
 SRR1275487
Male larvae		 GSM343915
embryo
 SRR902008
ovaries
 SRR553487
NRT_0-2 hours eggs
.......................................................................................GGTGGGAGTTTGGCTGGGGC............................................................................................................................................... 20 2 1 67.00 67 42 12 12 0 0 0 0 1 0 0 0
.......................................................................................GGTGGGAGTTTGGCTGGGGCGG............................................................................................................................................. 22 3 5 4.80 24 1 20 0 0 0 0 2 1 0 0 0
...........................................................................................................................CTCGCGATGATCTCATTG............................................................................................................. 18 0 1 3.00 3 0 0 1 0 2 0 0 0 0 0 0
......................................................................................AGGTGGGAGTTTGGCTGGGGC............................................................................................................................................... 21 3 7 3.00 21 16 4 1 0 0 0 0 0 0 0 0
........................................................................................GTGGGAGTTTGGCTGGGGC............................................................................................................................................... 19 2 8 2.63 21 15 1 5 0 0 0 0 0 0 0 0
....................................................................................................CTGGCGCTGTGGTAT....................................................................................................................................... 15 1 9 1.44 13 0 0 0 0 0 13 0 0 0 0 0
..................................................................................TGGGGGGTGGGAGTGGGG...................................................................................................................................................... 18 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0
.......................................................................................GGTGGGAGTGGGGCTGGGGC............................................................................................................................................... 20 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0
.................................................................................TTGGGGGGTGGGAGTGGGGCTGGGG................................................................................................................................................ 25 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................AGCTACCTAGTGTTGGAG.................................. 18 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0
....................................................................................GGGGGTGGGAGTGGGGCTGGTG................................................................................................................................................ 22 1 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0
....................................................................................GTGGGTGGGAGTGGGGCTGG.................................................................................................................................................. 20 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................................ATACGGAGGAGCAATGGGCAAGG.......... 23 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0
................................................................................TGTGGGGGGTGGGAGTGGGG...................................................................................................................................................... 20 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0
....................................................................................GGGGGTGGGAGTGGGGCTGGG................................................................................................................................................. 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
................................................................................TGTGTGGGGTGGGAGTGGGGCT.................................................................................................................................................... 22 1 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0
.......................................................................................................................................................................................................GCTACCTAGTGTTGGAGGATACGGAGG........................ 27 0 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0
.........................................................................................TGGGAGTGGGGCTGGGGCTGTA........................................................................................................................................... 22 1 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0
...........................................................................................................................CTCGCGATGATCTCATGG............................................................................................................. 18 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0
.................................................................................GTGGGGGGTGGGAGTGGG....................................................................................................................................................... 18 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0
....................................................................................GGGGGTGGGAGTGGGGCT.................................................................................................................................................... 18 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0
.......................................................................................GGTGGGAGTTTGGCTGGGGCG.............................................................................................................................................. 21 3 9 0.78 7 2 5 0 0 0 0 0 0 0 0 0
..................................................................................TGGGGGGTGGGAGTGG........................................................................................................................................................ 16 0 2 0.50 1 0 0 0 1 0 0 0 0 0 0 0
.....................................................................................GGGGTGGGAGTGGGGCTGGT................................................................................................................................................. 20 1 2 0.50 1 0 0 0 0 0 0 0 0 0 1 0
.......................................................................................GGTGGGAGTTTGGCTGGGG................................................................................................................................................ 19 2 3 0.33 1 1 0 0 0 0 0 0 0 0 0 0
..................................................................................................GGCTGGGGCGGTGGAATTC..................................................................................................................................... 19 2 4 0.25 1 1 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................TGCTCGGGTGTAGCTAC.............................................. 17 2 5 0.20 1 0 0 0 1 0 0 0 0 0 0 0
..........................................................................................GGGAGTGGGGCTGGG................................................................................................................................................. 15 0 5 0.20 1 0 0 0 1 0 0 0 0 0 0 0
......................................................................................................................................................................................................................AGGATAGGTAGGAGCCATGG................ 20 3 6 0.17 1 1 0 0 0 0 0 0 0 0 0 0
.......................................................................................GGTGGGAGTTTGGCTGGG................................................................................................................................................. 18 2 14 0.14 2 0 2 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................TCAGGTACTGTGTAGCTAC.............................................. 19 3 8 0.13 1 0 0 0 1 0 0 0 0 0 0 0
.......................................................................................GTTGGGAGTTTGGCTGGGGCT.............................................................................................................................................. 21 3 11 0.09 1 0 1 0 0 0 0 0 0 0 0 0
.......................................................................................GGTGCGAGTTTGGCTGGGGC............................................................................................................................................... 20 3 11 0.09 1 1 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................TGCTATTGTGTAGCTAC.............................................. 17 2 12 0.08 1 0 0 0 1 0 0 0 0 0 0 0
......................................................................................GGGTGGGAGTTTGGCTGGGGG............................................................................................................................................... 21 3 13 0.08 1 1 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................TGGAGTCGGAGCAAA........................................................................................... 15 1 16 0.06 1 0 0 0 0 0 0 0 0 0 0 1
..........................................................................................................................................................................................CCCCTCCCGTGTAGCTAC.............................................. 18 3 20 0.05 1 0 0 0 1 0 0 0 0 0 0 0

Anti-sense strand reads

AAAACATATTTATGTATAATCCGATACTCACACACGCACGATCCCGGTTTGTCGACTAAGACGGATCGACGGTGGACTAAACACCCCCCACCCTCACCCCGACCCCGACACCATAAGACATACGAGCGCTACTAGAGTAACACAACCTTAGCCTCGTTTTCGATTTAGTTGAACTGTACACAAGAAGACGAGGACACATCGATGGATCACAACCTCCTATGCCTCCTCGTTACCCGTTCCTAGTCGTAAA
*************************************************************************************************************.....(((((((.....((..(((((((((....))))).)))))).....))))))).********************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR902008
ovaries
 SRR553487
NRT_0-2 hours eggs
 SRR553485
Chicharo_3 day-old ovaries
 O001
Testis
 SRR553488
RT_0-2 hours eggs
 SRR553486
Makindu_3 day-old ovaries
 M053
female body
 M023
head
 M024
male body
.......................................................................................................................ATACGAGCGCTACTAGAGTAA.............................................................................................................. 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0
..................................................GGCGACTAAGACGGTTCG...................................................................................................................................................................................... 18 2 6 0.83 5 0 2 0 2 0 0 1 0 0
.........................................................................................................................................................ACGATTTCGATTTAGTTGA.............................................................................. 19 2 2 0.50 1 0 0 1 0 0 0 0 0 0
..................................................GGCGACTAAGACGGTTC....................................................................................................................................................................................... 17 2 17 0.47 8 0 3 0 0 3 2 0 0 0
.....................................................................................................................................................................................AAGAAGATGAGGACA...................................................... 15 1 16 0.19 3 0 1 1 0 1 0 0 0 0
..................................................................CGAGGATGGACTAAACTCC..................................................................................................................................................................... 19 3 9 0.11 1 0 0 0 0 0 0 0 1 0
.........................................................................................................................................................ACGATTTCGATTTAGTTG............................................................................... 18 2 10 0.10 1 0 0 1 0 0 0 0 0 0
.................................................................................................................TAAGAGATAGGAGCGCT........................................................................................................................ 17 2 10 0.10 1 0 1 0 0 0 0 0 0 0
....................................................CGACTAAGACGGTTC....................................................................................................................................................................................... 15 1 10 0.10 1 0 0 0 0 0 1 0 0 0
.....................................................GACTAAGACGGTTCG...................................................................................................................................................................................... 15 1 11 0.09 1 0 1 0 0 0 0 0 0 0
....................................................................................................................................................................TTAGTTGAACTGAAC....................................................................... 15 1 20 0.05 1 0 1 0 0 0 0 0 0 0
....................................................CGACTAAGACGGCTCGGG.................................................................................................................................................................................... 18 3 20 0.05 1 0 0 0 0 0 0 0 0 1
............................................................ATGGATCTACTGTGGACT............................................................................................................................................................................ 18 3 20 0.05 1 0 0 0 0 1 0 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim2 3r:20260340-20260589 + dsi_12853 TTTT---G---TATAAATA-CATATTAGGCTATG---------------------------------------------A----GTGTGTGCGTGC-----------------------------------TAGGGC---CAAACAGCTGATTCTGCCTAGCTGCCACCTGATTTGTGGGGGGTGGGAGT--------------------------------------------GG-GGCTGGGGCTGTG-GTATTCTG----T-------ATGCTCGCGATGATCTCATTG-TGTTGGA-ATCGGAGCAAAA-GCTAAA----TCAAC--TTGACATGTGT--T---CTTCTGCTCCTG-------------TGTAGCTACCTAGTGTTGGAGGATAC------------------GGAGGAGCA---ATGGGCAAGGATCAGCATTT
droSec2 scaffold_33:3265-3514 + TTTT---G---TATAAATA-CATATTAGGCTATG---------------------------------------------A----GTGTGTGCGTGC-----------------------------------TAGGGC---CAAACAGCTGATTCCGCCTAGCTGCCACCTGATTTGTGAGGGGTGGGAGT--------------------------------------------GG-GGCTGGGGCTGTG-GTATTCTG----T-------ACGCTCGCGATGATCTCATTG-TGTTGGA-ATCGGAGCAAAA-GCTAAA----TCAAC--TTGACATGTGT--T---CTTCTGCTCCTG-------------TGTAGCTACCTAGTGTTGGAGGATAC------------------GGAGGAGCA---ATGGGCAAGGATCAGCATTT
dm3 chr3R:20744139-20744393 + TTTT---G---TATAAAAAAAATATTTGGCTATC---------------------------------------------A----GTCTGTGCGTGC-----------------------------------TAGGGC---CAAACAGCTGATTCCGCCTGGCTGCCACCTGATTTGTTGGGGGTGTGAGT--------------------------------------------GG-GGCTGGGGCTGTG-GTATTCTG----T-------ATGCTCGCGATGATCTCATTG-TGTTGGA-ATCGGAGCAAAA-GCTAAACTAAACAAC--TTGACATGTGT--T---CTTCTGCTCCTG-------------TGTAGCTACCTAGTGTTGGAGGATAC------------------GGAGGAGCA---ATGGGCAAGGATCAGCATTT
droEre2 scaffold_4820:7305238-7305474 - TTTT---G---TATAAATA-AATATAA-ACTATT---------------------------------------------A----GTGTGTGCGTGC-----------------------------------TAGGGC---CAAACAGCTGATTCCGCCTGGCTGCCACCTGATT---G-------GGGCT--------------------------------------------GG-GGGTGGGGCTGTG-GTATTCTG----T-------ATGCTGGCGATGATCTCATTG-TCTTGGA-ATCGGAGCAAAA-GCTAAA----TCAAC--ATGACATGTGT--T---TTTCTGCTCC---------------TGTAGCTACCTAGTGTTGGAGGATAC------------------CGAGGAGCA---ATGGGCAAAGATCAGCATTT
droYak3 3R:25750746-25750985 - GTTC---G---TATAAATA-AATATGA-GCTATG---------------------------------------------A----GTGTGTGCGTTC-----------------------------------TAGGGC---CAAACAGCTGATTCCGCCTAGCTGCCACCTGATTTTTG-------GGGCT--------------------------------------------GG-GGGTGGGGCTGTG-GTATTCTG----T-------ATGCTCGCGATGATCTCATTG-TCTTGGA-ATCGGAGCAAAA-GCTAAA----TCAAT--ATGACATGTGT--T---TTTGTGCTCC---------------TGTAGCTACCTAGTGTTGGAGGATAC------------------GGAGGCGCA---ATGGGCAAGGATCAGCATTT
droEug1 scf7180000409692:657552-657793 - TTTG---G---TGTAAATA-AAAATGA-GC---------GTG----------CG------CG-----------------A----GTGTGTGTGTGC-----------------------------------TAGGGC---CCAACAGCTGAT-CCGCCTAGCTGCCACCTGATTT-TG-------GGACT--------------------------------------------GG-GGGTGGGGCTCTG-TTATTCTG----T-------ATGCTCGCGATGATCTCATTC-TCTTAAA-ATCGGAGCAATA-GCTAAA----ACAAC--CTGACACATGTGTT----TTCTGCCCC---------------TGTAGTTACCTAGTCTTGGAGGATCT------------------GGAGGAGCA---ATGGGTAAAGATCAGCATTT
droBia1 scf7180000302402:4539692-4539941 + TTCC---G---AGTAAATA-AATGCGA-GCTATGC----GGT----------TG------CT-----------------A----GTGTGTGTGTGA-----------------------------------TAGGGC---CAAACAGCTGAT-CCGCCCGCCCGCCACCTGATTCTTG-------GGGCT--------------------------------------------GG-GGGTGGGGCTGTG-GTATTCTG----T-------ATGCTCGCGATGATCTCATTC-TCTTGGA-ATCGGAGCACCA-GCTAAA----ACAAC--CTGACATGTGC--TCTTCTTCTGCCCC---------------TGTAGATACCTAGTCTTGGAGGATCC------------------GGAGGCGCA---ATGGGCAAGGATCAGCATTT
droTak1 scf7180000415310:373027-373272 - GATTA--GGTGTA-------------------TGCGTGTGTG----------TG------TG-----------------T----GTGTGTGTGTGC-----------------------------------TAGGGC---CAAACAGCTGATTCCGCCTGTTTGCCACCTGATTTTTG-------GGGCT--------------------------------------------GG-GGGTGGGGCTCTT-GTATTCCG-TTCTGCTC---GCGATTGCGATGATCTCATTC-TCTTGGA-ATCGGAGCAGCA-GCTAAA----TCAAC--CTGACATGTGT--T---TTTTCGCCCC---------------TGCAGCTATCTAGTCTTGGAGGATCC------------------GGAGGAGCA---ATGGGCAAGGATCAGCATTT
droEle1 scf7180000491212:44315-44575 + TT-T---G---TGTAAATA-AATAAGG-GCTATAA--AAGTGTGAGAGCAGGTG------TG-----------------A----GTGCGTGTGTGT-----------------------------------TAGGGC---C-AACAGCTGATTCC--------GCCACCTGATTTTTG-------CGGCT--------------------------------------------GG-AGGTGGGGCGTCT-G---TAA-------------ATTCTTGCGATGATCTCATTC-TCTTGAA-ATCGGAGCAAAA-GCTAAAATCTGCAAC--CTGCCATGTGT--T---TTTCCGTCCC---------------GTTAGTTACCTAGTCTTGGAGGAGTCG------GAGTCGGTGGCGGATGAGCA---ATGGGCAAGGATCAACATTT
droRho1 scf7180000779488:38222-38463 - GATT---G---TGTAAATA-AATACGA-GCAATAA--GCGTG----------TG------AT-----------------A----G--TGTGTGTGT-----------------------------------TAGGGC---C-AACAGCTGATTCC--------GCCACCTGATTTTTG-------GGGCT--------------------------------------------GC-GGGTGGGACT--------TCTG----T-------ATTCTTACGATGATCTCATTTGTCTTGGAAACCGGAGCAAAA-GCTAAA----GCAAT--CTGACATGTGT--T---TTTTCGCTATGT-------GTTTCCTATAGCTACACAGACTTGGAGGAGTC------------------GGATGAGCA---ATGGGCAAGGATCAACATTT
droFic1 scf7180000454055:642315-642576 + TTTG---G---TGTAAATA-AATACGA-GCTATTT--GCGTG----------CG------AT-----------------A----GTGTGTGTGTGC---------------------------------TTTAGGGC---CAAACAGCTGATTCCGCAT-GCCGCCACCTGATATAAG-------GGGCT--------------------------------------------GG-GGGTGGGGCTTTG-GTGTTCTG----T-------TTTCTCGCGATGATCTCATTC-TCTTGGA-ATCGGAGCAAAA-ACTAAC--AGGCAAC--CCGACATGTGT--T---TTTCTGCCTT---------------CATAGTTACCTAGTCGTGGATGATCCCGAGGAGGC---------GGAGAAGCA---ATGGGCAAGGATCAGCATTT
droKik1 scf7180000302461:2250824-2251105 - TT-A---G---TGTAAATA-AATACGG-GCTCAGT--GGGTG----AG----CGCGTGCCTA-----------------TGTATGTGTGTGGGTGT-----------------------------------AAGGGC---C-AACAGCTGATTCTGCCTGGCTGCCACCTGATTG-TG-------GGGCT---GGTGG------------------------------------GC-GGGTGGGGCTCGGTGCGTTCAGGTTCT-------ATTCTCGCGATGATCTCATTC-TCTTCGA-ACGGGAGCAAAA-TCACAT----ACCACTGCTGACATGTGC--TCG-CCTCTGTTTT---------------CGCAGTAACGACGTGGTGGAG-ACA--------GCGCCGCT---GGAGGAGCAAGGATGGGAAAGGATCAGCACCT
droAna3 scaffold_13340:18905079-18905301 - GATTA--G---CGTAAATA-AATATGA-AGTATGCGTG--------------TG------TT-----------------A----GTGT-----TGTCGGTCAATCCGCAAGT-----T--TCGTTTACAGTTAGGGC---C-ACCAGCTGATTC-----------CACCTGATTTTT--------TGGCT--------------------------------------------GG-GGGTGGGGCTGT-----TTCTG-------------TTCTCGCGATGATCTCATTT-CGTTTTC-A-----------------------------CTGATATGTGC--G---C---TGCTTCAT-------------TGCAGGTCTTTAGT-------GAGAA------------------GGAGGAGCA---ATGGGAAAGGATCAGCAGCT
droBip1 scf7180000395652:272719-272946 + GATTA--G---TGTAAATA-AATATGA-AATATGCGTG--------------TG------TGTGTT-------------A----GTGT------ATCGGTCAATCCGCAAGT-----T--TCGTTTACAGTTAGAGC---C-ACCAGCTGATTC-----------CACCTGATTT-TG-------GGGCT--------------------------------------------GGGGGGTGGGGCGGT-----TTCTG-------------TTCTCGCGATGATCTCATTT-CTTA---------------------------TTCA---CTGACATGTGC--G---CCTCCATCGT---------------TGCAGGTCTTTAGT-------GAGAA------------------GGAGGAGCA---ATGGGAAAGGATCATCAGCT
dp5 2:10988750-10988993 - TG-G-GTA---TATG-------------------TATG--------------TG------TG-----------------A----ATATG--TATGCCAAGTAATCGACAGGT-----TCTCTGTTTACAGTAAGGGCGAACAAACAGCTGATTCTGC----CTGCCACCTAATT--TG-------GGGCT--------------------------------------------GG--------GCTGC------TCAA----T----ATTTTTCTTGCGATGATCTCATTC-CTTTCAA-TGTAGAACAAGACA----------------CTAACATGTGCGCT----CTTCGCTCTTTTATTTTT-----CTCCAGTAATCTAAA---------CAC------AGC---------GCAGCTCCC---ATGGGCAAGGATCAGCATTT
droPer2 scaffold_0:9478455-9478698 + TG-G-GTA---TATG-------------------TATG--------------TG------TG-----------------------TATATGTATGCCAAGTAATCGACAGGT-----TCTCTGTTTACAGTAAGGGCGAACAAACAGCTGATTCTGC----CTGCCACCTAATT--TG-------GGGCT--------------------------------------------GG--------GCTGC------TCAA----T----ATTTTTCTTGCGATGATCTCATTC-CTTTCAA-TGTAGAACAAGACA----------------CTAACATGTGCGCT----CTTCGCTCTTTTATTTTT-----CTCTAGTAATCTAAA---------CAC------AGC---------GCAGCTCCC---ATGGGCAAGGATGAGCATTT
droWil2 scf2_1100000004943:12672478-12672666 - TACA--TA---CATA--CA-AACATAC------------GTA----------CA------TT-----------------TGA--ATGTATA--C----------------------------------AATTAGGGC---C-AACAGCTGATTTTG----ATTGCCACCTGATACG----GGCTGGGGCT--------------------------------------------GG-GGCTGGGGCTGTC-TGGTTCTG-------------ATCTTGTGATGATCTCATTC-CTTTGA------------------------------------TTTATTT--A---TTTCAGCAC-----------------ATTGCCATAT------------------------------------TAAGTT---ATGGGTAAGGATCAGCACTT
droVir3 scaffold_12855:2483168-2483414 + TTAT---G---TATG-------------------CATG--------------TG------TGTGTGCGTGTGCACCATCGGA--ATGTGCGCGATC--------TGGAACGTGCGCTGCTGCGTTTACAGT--GGGC---CAAACAGCTGA----------CTGCCACCTGATGA-----------GGCGGCG--------AGGAAGACCTGTTTACACTGAAAGGGTGT------------GGGCGGT-----GTGGG-------------GAGTTGCTATGATCTCATTC-TTTTTCA-TTTT---------------------------------GTAT--T---T--TTGT--------------------TAATTTTCTTAA-----AATA----------GC---TTTCACAGAACTCCA---ATGGGCAAGGATCAGCATTT
droMoj3 scaffold_6540:11694855-11695104 + TGTTT--G---TTTA-----------------TGCGTG--------------TG------TGTG--------C-CCATTGGA--ATGTGTGAATAA-------TTGGAACGTG--CTGCTGAGTTTACAGTGG-GCT---GAAACAGCTGA----------CTGCCACCTGATGA-----------GACAACGGGTGGGAAAGAGAGACCTGTTTACTCTGAAAGGGTGTGGGTGG-GGGTGGGG----------------------------TATAGCTATGATCTCATTG-TGTTTTA-GTTTAATCACAA-ATT----------------------TGA--T---ATTCTTTTAAAT-------AAATG-------------------------AA------------------ATAGCTCCA---ATGGGCAAGGATCAGCATTT
droGri2 scaffold_14624:2456101-2456136 - GAAT---T---TGTGAATT-TGT--------------------------------------A-----------------T----GTGTGTGTGAAC-----------------------------------TGGAGC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
TTTT---G---TATAAATA-CATATTAGGCTATG---------------------------------------------A----GTGTGTGCGTGC-----------------------------------TAGGGC---CAAACAGCTGATTCTGCCTAGCTGCCACCTGATTTGTGGGGGGTGGGAGT--------------------------------------------GG-GGCTGGGGCTGTG-GTATTCTG----T-------ATGCTCGCGATGATCTCATTG-TGTTGGA-ATCGGAGCAAAA-GCTAAA----TCAAC--TTGACATGTGT--T---CTTCTGCTCCTG-------------TGTAGCTACCTAGTGTTGGAGGATAC------------------GGAGGAGCA---ATGGGCAAGGATCAGCATTTSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
..................................................................................................................................................................................................................................................................................CTCGCGATGATCTCATTG-............................................................................................................................................................1813.00310200000000000000
................................................................................................................................................................................TGGGGGGTGGGAGT--------------------------------------------GG-GG..................................................................................................................................................................................................................1811.00100000000001000000
.....................................................................................................................................................................................GGTGGGAGT--------------------------------------------GG-GGCTGGGGC...........................................................................................................................................................................................................2011.00100000001000000000
........................................................................................................................................................................................................................................................................................................................................................................................AGCTACCTAGTGTTGGAG.......................................................1811.00110000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................ATAC------------------GGAGGAGCA---ATGGGCAAGG..........2311.00100100000000000000
..............................................................................................................................................................................TGTGGGGGGTGGGAGT--------------------------------------------GG-GG..................................................................................................................................................................................................................2011.00100000000001000000
..................................................................................................................................................................................GGGGGTGGGAGT--------------------------------------------GG-GGCTGGG.............................................................................................................................................................................................................2111.00100010000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................GCTACCTAGTGTTGGAGGATAC------------------GGAGG...........................2711.00100000000000100000
.......................................................................................................................................................................................TGGGAGT--------------------------------------------GG-GGCTGGGGCTGTA-......................................................................................................................................................................................................2211.00100000000001000000
...............................................................................................................................................................................GTGGGGGGTGGGAGT--------------------------------------------GG-G...................................................................................................................................................................................................................1811.00100000000001000000
..................................................................................................................................................................................GGGGGTGGGAGT--------------------------------------------GG-GGCT................................................................................................................................................................................................................1811.00100000000000001000
................................................................................................................................................................................TGGGGGGTGGGAGT--------------------------------------------GG-....................................................................................................................................................................................................................1620.50100000000001000000
...................................................................................................................................................................................GGGGTGGGAGT--------------------------------------------GG-GGCTGGT.............................................................................................................................................................................................................2020.50100000000000010000
........................................................................................................................................................................................GGGAGT--------------------------------------------GG-GGCTGGG.............................................................................................................................................................................................................1550.20100000000001000000
droSec2
TTTT---G---TATAAATA-CATATTAGGCTATG---------------------------------------------A----GTGTGTGCGTGC-----------------------------------TAGGGC---CAAACAGCTGATTCCGCCTAGCTGCCACCTGATTTGTGAGGGGTGGGAGT--------------------------------------------GG-GGCTGGGGCTGTG-GTATTCTG----T-------ACGCTCGCGATGATCTCATTG-TGTTGGA-ATCGGAGCAAAA-GCTAAA----TCAAC--TTGACATGTGT--T---CTTCTGCTCCTG-------------TGTAGCTACCTAGTGTTGGAGGATAC------------------GGAGGAGCA---ATGGGCAAGGATCAGCATTTSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
..................................................................................................................................................................................AGGGGTGGGAGT--------------------------------------------GG-GGCTGGGG............................................................................................................................................................................................................2213.0031200
..................................................................................................................................................................................AGGGGTGGGAGT--------------------------------------------GG-GGCTGGG.............................................................................................................................................................................................................2112.0021100
...................................................................................................................................................................................................................................................................................................................................................................................................GTTGGAGGATAC------------------GGAGGAG.........................1911.0010100
......................................................................................................................................................................................GTGGGAGT--------------------------------------------GG-GGCTGGGGCTGTG-GT....................................................................................................................................................................................................2511.0010100
...............................................................................................................................................................................................................................................................................................CATTG-TGTTGGA-ATCGGAGCA...........................................................................................................................................2111.0011000
...................................................................................................................................................................................................................................................................................................................................................................................................GTTGGAGGATAC------------------GGAGGAGCA---ATG.................2411.0010100
..................................................................................................................................................................................AGGGGTGGGAGT--------------------------------------------GG-GGCTGGT.............................................................................................................................................................................................................2111.0010001
........................................................................................................................................................................................GGGAGT--------------------------------------------GG-GGCTGGGGCTGTG-G.....................................................................................................................................................................................................2211.0010100
...............................................................................................................................................................................................................................................................................................CATTG-TGTTGGA-ATCGGAG.............................................................................................................................................1911.0010001
......................................................................................................................................................................................GTGGGAGT--------------------------------------------GG-GGCTGGGGCTGTG-G.....................................................................................................................................................................................................2411.0010100
...................................................................................................................................................................................................................................................................................................................................................................................................GTTGGAGGATAC------------------GGAGGAGCA---ATGG................2511.0010100
.....................................................................................................................................................................................GGTGGGAGT--------------------------------------------GG-GGCTGGGG............................................................................................................................................................................................................1911.0010001
...................................................................................................................................................................................................................................................................................................................................................................................................GTTGGAGGATAC------------------GGAGGAGC........................2011.0010010
...........................................................................................................................................................................ATTTGTGAGGGGTGGGAG....................................................................................................................................................................................................................................................................1811.0010001
dm3
TTTT---G---TATAAAAAAAATATTTGGCTATC---------------------------------------------A----GTCTGTGCGTGC-----------------------------------TAGGGC---CAAACAGCTGATTCCGCCTGGCTGCCACCTGATTTGTTGGGGGTGTGAGT--------------------------------------------GG-GGCTGGGGCTGTG-GTATTCTG----T-------ATGCTCGCGATGATCTCATTG-TGTTGGA-ATCGGAGCAAAA-GCTAAACTAAACAAC--TTGACATGTGT--T---CTTCTGCTCCTG-------------TGTAGCTACCTAGTGTTGGAGGATAC------------------GGAGGAGCA---ATGGGCAAGGATCAGCATTTSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
.............................................................................................................................................................................................T--------------------------------------------GG-GGCTGGGGCTGTG-GTA...................................................................................................................................................................................................19114.00140000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100001000000000000000000000010000000000000000000000000000000000000000000001000101000000000112000000000400000000000
.............................................................................................................................................................................................T--------------------------------------------GG-GGCTGGGGCTGTG-GT....................................................................................................................................................................................................1814.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000300000000100
............................................................................................................................................................................................GT--------------------------------------------GG-GGCTGGGGCTGTG-G.....................................................................................................................................................................................................1814.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000001000000100000000000
..........................................................................................................................................................................................GAGT--------------------------------------------GG-GGCTGGGGCTGTG-GT....................................................................................................................................................................................................2113.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000002000000000000000000000000
..................................................................................................................................................................................GGGGGTGTGAGT--------------------------------------------GG-GGCTGGGGC...........................................................................................................................................................................................................2312.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000
........................................................................................................................................................................................................................................................................................ATGATCTCATTG-TGTTGGA-ATCGGAGC............................................................................................................................................2712.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000100000000000
...................................................................................................................................................................................GGGGTGTGAGT--------------------------------------------GG-GGCTGGGG............................................................................................................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001010000000000000000
.......................................................................................................................................................................................TGTGAGT--------------------------------------------GG-GGCTGGGGC...........................................................................................................................................................................................................1812.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000
............................................................................................................................................................................................GT--------------------------------------------GG-GGCTGGGGCTGTG-GT....................................................................................................................................................................................................1912.0020000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000
........................................................................................................................................................................................GTGAGT--------------------------------------------GG-GGCTGGGGCTGT........................................................................................................................................................................................................2012.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000001000000000000000000
............................................................................................................................................................................................GT--------------------------------------------GG-GGCTGGGGCTGTG-GTA...................................................................................................................................................................................................2012.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
...................................................................................................................................................................................GGGGTGTGAGT--------------------------------------------GG-GGCTGGGGC...........................................................................................................................................................................................................2212.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000010000000
.................................................................................................................................................................................TGGGGGTGTGAGT--------------------------------------------GG-GGCTGGGGC...........................................................................................................................................................................................................2412.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000100000000000
.....................................................................................................................................................................................................................................................................................................TGTTGGA-ATCGGAGCAAAA-G......................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................AGGAGCA---ATGGGCAAGGA.........1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000
.......................................................................................................................................................................................................................................................................................GATGATCTCATTG-TGTTGG......................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................ATTG-TGTTGGA-ATCGGAGC............................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000
.........................................................................................................................................................................................TGAGT--------------------------------------------GG-GGCTGGGGCTGTG-GTAT..................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................CTTCTGCTCCTG-------------TGTAGCTACC..................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................GT--------------------------------------------GG-GGCTGGGGCTGTG-GTATA.................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000
...........................................................................................................................................................................................AGT--------------------------------------------GG-GGCTGGGGCTGTG-GTA...................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................CTACCTAGTGTTGGAGGA.....................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................GTGT--T---CTTCTGCTCCTG-------------TGTAG.......................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................ACTAAACAAC--TTGACATGT.............................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000
.................................................................................................................................................................................TGGGGGTGTGAGT--------------------------------------------GG-GGCTGGGG............................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000
.....................................................................................................................................................................................................................................................................................................................................................T--T---CTTCTGCTCCTG-------------TGTAGCTACC..................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................TGGCTATC---------------------------------------------A----GTCTGTGCGTGC-----------------------------------..............................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................AGT--------------------------------------------GG-GGCTGGGGCTGTG-GTT...................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000
........................................................................................................................................................................................GTGAGT--------------------------------------------GG-GGCTGGGGCTGTG-GT....................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000
..........................................................................................................................................................................................GAGT--------------------------------------------GG-GGCTGGGGCTGTT-T.....................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000
......................................................................................................................................................................................................................................................................................................GTTGGA-ATCGGAGCAAAA-GCT....................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000
....................................................................................................................................................................................................................................................GCTGTG-GTATTCTG----T-------ATG...............................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000
........................................................................................................................................................................................GTGAGT--------------------------------------------GG-GGCTGGGGCTG.........................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................AGCTACCTAGTGTTGGAGGAT....................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000
...............................................................................................................................................................................GTTGGGGGTGTGAGT--------------------------------------------GG-GGCTGGGGCT..........................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000
............................................................................................................................................................................................................................................................TATTCTG----T-------ATGCTCGCGATGA.....................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................TGAGT--------------------------------------------GG-GGCTGGGGCTGTG-G.....................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................TGAGT--------------------------------------------GG-GGCTGGGGCTG.........................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000
.............................................................................................................................................................................................................................................................................................CTCATTG-TGTTGGA-ATCG................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................TGCTCGCGATGATCTCATTG-TG..........................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................GAGT--------------------------------------------GG-GGCTGGGGCTGTG-G.....................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................GTGTGAGT--------------------------------------------GG-GGCTGGGG............................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000
.............................................................................................................................................................................................T--------------------------------------------GG-GGCTGGGGCTGTG-GTATT.................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100
................................................................................................................................................................................................................................................................................................................................................ATGTGT--T---CTTCTGCTCCTG-------------T...........................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................GTGAGT--------------------------------------------GG-GGCTGGGGCTGTT-......................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................GAGGAGCA---ATGGGCAAGGATCAGC....2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000
....................................................................................................................................................................................GGGTGTGAGT--------------------------------------------GG-GGCTGGGGC...........................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................AAAA-GCTAAACTAAACAAC--TT....................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................GT--T---CTTCTGCTCCTG-------------TGTAGC......................................................................2111.0010000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................GGGGGTGTGAGT--------------------------------------------GG-GGCTGGGG............................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000
......................................................................................................................................................................................GTGTGAGT--------------------------------------------GG-GGCTGGGGCTGTG-GTA...................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................TTGGAGGATAC------------------GGAGGAGCA---....................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000
...........................................................................................................................................................................ATTTGTTGGGGGTGTGAGT--------------------------------------------G......................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................ATGTGT--T---CTTCTGCTCCTG-------------TGTAGT......................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................GAGCAAAA-GCTAAACTAAACA..........................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................TG-TGTTGGA-ATCGGAGCAAAA-GCTAAA.................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................TTGACATGTGT--T---CTTCTGCTCC...........................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................GGGGTGTGAGT--------------------------------------------GG-GGCTGGGGCT..........................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................GTTGGGGGTGTGAGT--------------------------------------------GG-GGC.................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000
...............................................................................................................................................................................GTTGGGGGTGTGAGT--------------------------------------------GG-GGCTGGGGCTG.........................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................GGGGGTGTGAGT--------------------------------------------GG-GGCTGGGGCTG.........................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000
..........................................................................................................................................................................................GAGT--------------------------------------------GG-GGCTGGGGCTGTG-GTATG.................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000
................................................................................................................................................CAGCTGATTCCGCCTGGCTGCCACCT.......................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................GG-GGCTGGGGCTGTG-GTT...................................................................................................................................................................................................1820.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000
droEre2
TTTT---G---TATAAATA-AATATAA-ACTATT---------------------------------------------A----GTGTGTGCGTGC-----------------------------------TAGGGC---CAAACAGCTGATTCCGCCTGGCTGCCACCTGATT---G-------GGGCT--------------------------------------------GG-GGGTGGGGCTGTG-GTATTCTG----T-------ATGCTGGCGATGATCTCATTG-TCTTGGA-ATCGGAGCAAAA-GCTAAA----TCAAC--ATGACATGTGT--T---TTTCTGCTCC---------------TGTAGCTACCTAGTGTTGGAGGATAC------------------CGAGGAGCA---ATGGGCAAAGATCAGCATTTSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
................................................................................................................................................................................................................................................................................................................................................................................................AGTGTTGGAGGATAC------------------CGAGG...........................2011.0010000010
...................................................................................................................................................................................................................................................................................................................................................................................................GTTGGAGGATAC------------------CGAGGAGC........................2011.0010000100
.........................................................................................................................................................................................................................................................................................................................................................................................................GGATAC------------------CGAGGAGCA---ATGGGCAAA...........2411.0010100000
droYak3
GTTC---G---TATAAATA-AATATGA-GCTATG---------------------------------------------A----GTGTGTGCGTTC-----------------------------------TAGGGC---CAAACAGCTGATTCCGCCTAGCTGCCACCTGATTTTTG-------GGGCT--------------------------------------------GG-GGGTGGGGCTGTG-GTATTCTG----T-------ATGCTCGCGATGATCTCATTG-TCTTGGA-ATCGGAGCAAAA-GCTAAA----TCAAT--ATGACATGTGT--T---TTTGTGCTCC---------------TGTAGCTACCTAGTGTTGGAGGATAC------------------GGAGGCGCA---ATGGGCAAGGATCAGCATTTSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
..............................TATG---------------------------------------------A----GTGTGTGCGTTC-----------------------------------TAGGGC---CAAAC................................................................................................................................................................................................................................................................................................................2811.00100000010000
...........................................................................................................................................................................................................................................................................................................................................................................................................ATAC------------------GGAGGCGCA---ATGGGCAAGGATCA......2711.00110000000000
...................................................................................................................................................................................................................................................................................................................................................................................................GTTGGAGGATAC------------------GGAGGCGCA---ATGGGC..............2711.00100000010000
droEug1
TTTG---G---TGTAAATA-AAAATGA-GC---------GTG----------CG------CG-----------------A----GTGTGTGTGTGC-----------------------------------TAGGGC---CCAACAGCTGAT-CCGCCTAGCTGCCACCTGATTT-TG-------GGACT--------------------------------------------GG-GGGTGGGGCTCTG-TTATTCTG----T-------ATGCTCGCGATGATCTCATTC-TCTTAAA-ATCGGAGCAATA-GCTAAA----ACAAC--CTGACACATGTGTT----TTCTGCCCC---------------TGTAGTTACCTAGTCTTGGAGGATCT------------------GGAGGAGCA---ATGGGTAAAGATCAGCATTTSizeHit CountTotal NormTotal
No Reads
droBia1
TTCC---G---AGTAAATA-AATGCGA-GCTATGC----GGT----------TG------CT-----------------A----GTGTGTGTGTGA-----------------------------------TAGGGC---CAAACAGCTGAT-CCGCCCGCCCGCCACCTGATTCTTG-------GGGCT--------------------------------------------GG-GGGTGGGGCTGTG-GTATTCTG----T-------ATGCTCGCGATGATCTCATTC-TCTTGGA-ATCGGAGCACCA-GCTAAA----ACAAC--CTGACATGTGC--TCTTCTTCTGCCCC---------------TGTAGATACCTAGTCTTGGAGGATCC------------------GGAGGCGCA---ATGGGCAAGGATCAGCATTTSizeHit CountTotal NormTotal
No Reads
droTak1
GATTA--GGTGTA-------------------TGCGTGTGTG----------TG------TG-----------------T----GTGTGTGTGTGC-----------------------------------TAGGGC---CAAACAGCTGATTCCGCCTGTTTGCCACCTGATTTTTG-------GGGCT--------------------------------------------GG-GGGTGGGGCTCTT-GTATTCCG-TTCTGCTC---GCGATTGCGATGATCTCATTC-TCTTGGA-ATCGGAGCAGCA-GCTAAA----TCAAC--CTGACATGTGT--T---TTTTCGCCCC---------------TGCAGCTATCTAGTCTTGGAGGATCC------------------GGAGGAGCA---ATGGGCAAGGATCAGCATTTSizeHit CountTotal NormTotal
No Reads
droEle1
TT-T---G---TGTAAATA-AATAAGG-GCTATAA--AAGTGTGAGAGCAGGTG------TG-----------------A----GTGCGTGTGTGT-----------------------------------TAGGGC---C-AACAGCTGATTCC--------GCCACCTGATTTTTG-------CGGCT--------------------------------------------GG-AGGTGGGGCGTCT-G---TAA-------------ATTCTTGCGATGATCTCATTC-TCTTGAA-ATCGGAGCAAAA-GCTAAAATCTGCAAC--CTGCCATGTGT--T---TTTCCGTCCC---------------GTTAGTTACCTAGTCTTGGAGGAGTCG------GAGTCGGTGGCGGATGAGCA---ATGGGCAAGGATCAACATTTSizeHit CountTotal NormTotal
No Reads
droRho1
GATT---G---TGTAAATA-AATACGA-GCAATAA--GCGTG----------TG------AT-----------------A----G--TGTGTGTGT-----------------------------------TAGGGC---C-AACAGCTGATTCC--------GCCACCTGATTTTTG-------GGGCT--------------------------------------------GC-GGGTGGGACT--------TCTG----T-------ATTCTTACGATGATCTCATTTGTCTTGGAAACCGGAGCAAAA-GCTAAA----GCAAT--CTGACATGTGT--T---TTTTCGCTATGT-------GTTTCCTATAGCTACACAGACTTGGAGGAGTC------------------GGATGAGCA---ATGGGCAAGGATCAACATTTSizeHit CountTotal NormTotal
No Reads
droFic1
TTTG---G---TGTAAATA-AATACGA-GCTATTT--GCGTG----------CG------AT-----------------A----GTGTGTGTGTGC---------------------------------TTTAGGGC---CAAACAGCTGATTCCGCAT-GCCGCCACCTGATATAAG-------GGGCT--------------------------------------------GG-GGGTGGGGCTTTG-GTGTTCTG----T-------TTTCTCGCGATGATCTCATTC-TCTTGGA-ATCGGAGCAAAA-ACTAAC--AGGCAAC--CCGACATGTGT--T---TTTCTGCCTT---------------CATAGTTACCTAGTCGTGGATGATCCCGAGGAGGC---------GGAGAAGCA---ATGGGCAAGGATCAGCATTTSizeHit CountTotal NormTotal
No Reads
droKik1
TT-A---G---TGTAAATA-AATACGG-GCTCAGT--GGGTG----AG----CGCGTGCCTA-----------------TGTATGTGTGTGGGTGT-----------------------------------AAGGGC---C-AACAGCTGATTCTGCCTGGCTGCCACCTGATTG-TG-------GGGCT---GGTGG------------------------------------GC-GGGTGGGGCTCGGTGCGTTCAGGTTCT-------ATTCTCGCGATGATCTCATTC-TCTTCGA-ACGGGAGCAAAA-TCACAT----ACCACTGCTGACATGTGC--TCG-CCTCTGTTTT---------------CGCAGTAACGACGTGGTGGAG-ACA--------GCGCCGCT---GGAGGAGCAAGGATGGGAAAGGATCAGCACCTSizeHit CountTotal NormTotal
No Reads
droAna3
GATTA--G---CGTAAATA-AATATGA-AGTATGCGTG--------------TG------TT-----------------A----GTGT-----TGTCGGTCAATCCGCAAGT-----T--TCGTTTACAGTTAGGGC---C-ACCAGCTGATTC-----------CACCTGATTTTT--------TGGCT--------------------------------------------GG-GGGTGGGGCTGT-----TTCTG-------------TTCTCGCGATGATCTCATTT-CGTTTTC-A-----------------------------CTGATATGTGC--G---C---TGCTTCAT-------------TGCAGGTCTTTAGT-------GAGAA------------------GGAGGAGCA---ATGGGAAAGGATCAGCAGCTSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
...................................................................................................................................................................................................................................................................................................................................................................................................................................AGGAGCA---ATGGGAAAGGATCAGCA...2411.001100000
................................................................................................................................................................................................................................................................................................................................................................................................AGT-------GAGAA------------------GGAGGAGCA---ATGG................2111.001100000
droBip1
GATTA--G---TGTAAATA-AATATGA-AATATGCGTG--------------TG------TGTGTT-------------A----GTGT------ATCGGTCAATCCGCAAGT-----T--TCGTTTACAGTTAGAGC---C-ACCAGCTGATTC-----------CACCTGATTT-TG-------GGGCT--------------------------------------------GGGGGGTGGGGCGGT-----TTCTG-------------TTCTCGCGATGATCTCATTT-CTTA---------------------------TTCA---CTGACATGTGC--G---CCTCCATCGT---------------TGCAGGTCTTTAGT-------GAGAA------------------GGAGGAGCA---ATGGGAAAGGATCATCAGCTSizeHit CountTotal NormTotal
No Reads
dp5
TG-G-GTA---TATG-------------------TATG--------------TG------TG-----------------A----ATATG--TATGCCAAGTAATCGACAGGT-----TCTCTGTTTACAGTAAGGGCGAACAAACAGCTGATTCTGC----CTGCCACCTAATT--TG-------GGGCT--------------------------------------------GG--------GCTGC------TCAA----T----ATTTTTCTTGCGATGATCTCATTC-CTTTCAA-TGTAGAACAAGACA----------------CTAACATGTGCGCT----CTTCGCTCTTTTATTTTT-----CTCCAGTAATCTAAA---------CAC------AGC---------GCAGCTCCC---ATGGGCAAGGATCAGCATTTSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
.............................................................................................................................................................................................................................................................................................................................................................................................................AC------AGC---------GCAGCTCCC---ATGGGC..............2011.0010100000000
............................................................................................ATGCCAAGTAATCGACAGGT-----T...........................................................................................................................................................................................................................................................................................................................................2111.0010100000000
....................................................................................................................................................................CCACCTAATT--TG-------GGGCT--------------------------------------------GG--------GC...........................................................................................................................................................................................................2111.0010010000000
droPer2
TG-G-GTA---TATG-------------------TATG--------------TG------TG-----------------------TATATGTATGCCAAGTAATCGACAGGT-----TCTCTGTTTACAGTAAGGGCGAACAAACAGCTGATTCTGC----CTGCCACCTAATT--TG-------GGGCT--------------------------------------------GG--------GCTGC------TCAA----T----ATTTTTCTTGCGATGATCTCATTC-CTTTCAA-TGTAGAACAAGACA----------------CTAACATGTGCGCT----CTTCGCTCTTTTATTTTT-----CTCTAGTAATCTAAA---------CAC------AGC---------GCAGCTCCC---ATGGGCAAGGATGAGCATTTSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
.................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGCTCCC---ATGGGCAAGGAT........2111.001000100
droWil2
TACA--TA---CATA--CA-AACATAC------------GTA----------CA------TT-----------------TGA--ATGTATA--C----------------------------------AATTAGGGC---C-AACAGCTGATTTTG----ATTGCCACCTGATACG----GGCTGGGGCT--------------------------------------------GG-GGCTGGGGCTGTC-TGGTTCTG-------------ATCTTGTGATGATCTCATTC-CTTTGA------------------------------------TTTATTT--A---TTTCAGCAC-----------------ATTGCCATAT------------------------------------TAAGTT---ATGGGTAAGGATCAGCACTTSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
.............................................................................................................................................................................ACG----GGCTGGGGCT--------------------------------------------GG-GGCTGGGG............................................................................................................................................................................................................2316.00605001
..............................................................................................................................................................................CG----GGCTGGGGCT--------------------------------------------GG-GGCTGGGG............................................................................................................................................................................................................2212.00220000
..............................................................................................................................................................................CG----GGCTGGGGCT--------------------------------------------GG-GGCTGGG.............................................................................................................................................................................................................2112.00211000
...........................................................................................................................................................................................GCT--------------------------------------------GG-GGCTGGGGCTGTC-TGG...................................................................................................................................................................................................2111.00100100
...............................................................................................................................................................................................................................................................................................................................................................................................T------------------------------------TAAGTT---ATGGGTAAGGATCAGCA...2411.00100010
............................................................................................................................................................................TACG----GGCTGGGGCT--------------------------------------------GG-GGCTGGGGC...........................................................................................................................................................................................................2511.00101000
.............................................................................................................................................................................................................................................................................................................................................................................................TAT------------------------------------TAAGTT---ATGGGTAAGG..........1911.00100010
.......................................................................................................................................................................................TGGGGCT--------------------------------------------GG-GGCTGGGGCTGTC-TGGTTCT...............................................................................................................................................................................................2911.00110000
..............................................................................................................................................................................................................................................................................................................................................................................................AT------------------------------------TAAGTT---ATGGGTAAGGAT........2011.00100010
.............................................................................................................................................................................ACG----GGCTGGGGCT--------------------------------------------GG-GGCTGGGGC...........................................................................................................................................................................................................2411.00101000
.......................................................................................................................................................................................TGGGGCT--------------------------------------------GG-GGCTGGGGC...........................................................................................................................................................................................................18200.05101000
droVir3
TTAT---G---TATG-------------------CATG--------------TG------TGTGTGCGTGTGCACCATCGGA--ATGTGCGCGATC--------TGGAACGTGCGCTGCTGCGTTTACAGT--GGGC---CAAACAGCTGA----------CTGCCACCTGATGA-----------GGCGGCG--------AGGAAGACCTGTTTACACTGAAAGGGTGT------------GGGCGGT-----GTGGG-------------GAGTTGCTATGATCTCATTC-TTTTTCA-TTTT---------------------------------GTAT--T---T--TTGT--------------------TAATTTTCTTAA-----AATA----------GC---TTTCACAGAACTCCA---ATGGGCAAGGATCAGCATTTSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
...............................................................................................................................................................................................................................AGGGTGT------------GGGCGGT-----GTGGG-------------GA...............................................................................................................................................................................21110.0010002000002100000000000010000010020000000000000000000000000000100
..............................................................................................................................................................................................................................AAGGGTGT------------GGGCGGT-----GTGGG-------------G................................................................................................................................................................................2114.004001000000000010000000000010000010000000000000000000000000000000
...............................................................................................................................................................................................................................AGGGTGT------------GGGCGGT-----GTGGG-------------G................................................................................................................................................................................2013.003002100000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................GGGTGT------------GGGCGGT-----GTGGG-------------G................................................................................................................................................................................1913.003002000000000000000000000000000000000000000000000000000000000100
...............................................................................................................................................................................................................................AGGGTGT------------GGGCGGT-----GTGGG-------------GAG..............................................................................................................................................................................2213.003000000000000000000000010000000000001000000000000000000000000100
.................................................................................................................................................................................................................................GGTGT------------GGGCGGT-----GTGGG-------------GA...............................................................................................................................................................................1912.002000000001000000000000000000000000000000000000000000000000000010
...............................................................................................................................................................................................................................AGGGTGT------------GGGCGGT-----GTGGG-------------.................................................................................................................................................................................1912.002001000000000000000000000000100000000000000000000000000000000000
................................................................................................................................................................................................................................GGGTGT------------GGGCGGT-----GTGGG-------------GA...............................................................................................................................................................................2012.002000000000000000000000000000000010010000000000000000000000000000
..............................................................................................................................................................................................................................AAGGGTGT------------GGGCGGT-----GTGGG-------------GA...............................................................................................................................................................................2212.002000000000100000000000010000000000000000000000000000000000000000
....................................................................................................................................................................................................................................GT------------GGGCGGT-----GTGGG-------------GAGTTGC..........................................................................................................................................................................2111.001000000000000010000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................AGGGTGT------------GGGCGGT-----GTGGG-------------GG...............................................................................................................................................................................2111.001000000000010000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................AGGGTGT------------GGGCGGT-----GTGGG-------------GAGTT............................................................................................................................................................................2411.001000000000000000000000000000001000000000000000000000000000000000
...............................................................................................................................................................................................................................AGGGTGT------------GGGCGGT-----GTGGG-------------GAC..............................................................................................................................................................................2211.001000000000000000000010000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................CAGAACTCCA---ATGGGCAAGGATCAG.....2511.001000000000000000100000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................TCACAGAACTCCA---ATGGGCAAGGATC.......2611.001000000000000000000000000000000000000001000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................TA----------GC---TTTCACAGAACTCCA---ATGGGCA.............2611.001001000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................AGGGTGT------------GGGCGGT-----GTGGG-------------C................................................................................................................................................................................2011.001000000000000000000000000000001000000000000000000000000000000000
..............................................................................................................................................................................................................................AAGGGTGT------------GGGCGGT-----GTGGG-------------.................................................................................................................................................................................2011.001000000000000000000000000000001000000000000000000000000000000000
droMoj3
TGTTT--G---TTTA-----------------TGCGTG--------------TG------TGTG--------C-CCATTGGA--ATGTGTGAATAA-------TTGGAACGTG--CTGCTGAGTTTACAGTGG-GCT---GAAACAGCTGA----------CTGCCACCTGATGA-----------GACAACGGGTGGGAAAGAGAGACCTGTTTACTCTGAAAGGGTGTGGGTGG-GGGTGGGG----------------------------TATAGCTATGATCTCATTG-TGTTTTA-GTTTAATCACAA-ATT----------------------TGA--T---ATTCTTTTAAAT-------AAATG-------------------------AA------------------ATAGCTCCA---ATGGGCAAGGATCAGCATTTSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
....................................................................................................................................................................................................................................GTGGGTGG-GGGTGGGG----------------------------TA..............................................................................................................................................................................1815.005001301
.................................................................................................................................................................................................................................GGTGTGGGTGG-GGGTGGGG----------------------------TA..............................................................................................................................................................................2113.003100002
...............................................................................................................................................................................................................................AGGGTGTGGGTGG-GGGTGGGG----------------------------................................................................................................................................................................................2112.002100001
...............................................................................................................................................................................................................................AGGGTGTGGGTGG-GGGTGGGG----------------------------TG..............................................................................................................................................................................2311.001001000
....................................................................................................................................................................................................................................GTGGGTGG-GGGTGGGG----------------------------TAA.............................................................................................................................................................................1921.002000002
..............................................................................................................................................................................................................................AAGGGTGTGGGTGG-GGGTGGGG----------------------------TATA............................................................................................................................................................................2611.001000001
.................................................................................................................................................AGCTGA----------CTGCCACCTGATGA-----------G......................................................................................................................................................................................................................................................................2111.001100000
.....................................................................................................................................................................................................................................TGGGTGG-GGGTGGGG----------------------------TATA............................................................................................................................................................................1911.001000001
..............................................................................................................................................................................................................................AAGGGTGTGGGTGG-GGGTGG..............................................................................................................................................................................................................2011.001100000
.........................................................................................................GGAACGTG--CTGCTGAGTTTACAGTGG-GC.........................................................................................................................................................................................................................................................................................................................2811.001000010
..............................................................................................................................................................................................................................AAGGGTGTGGGTGG-GGGTGGGG----------------------------TT..............................................................................................................................................................................2411.001000100
....................................................................................................................................................................................................................................GTGGGTGG-GGGTGGGG----------------------------TAT.............................................................................................................................................................................1911.001001000
..............................................................................................................................................................................................................................AAGGGTGTGGGTGG-GGGTGGGG----------------------------TC..............................................................................................................................................................................2411.001000001
...................................................................................................................................................................................................................................TGTGGGTGG-GGGTGGGG----------------------------TA..............................................................................................................................................................................1911.001001000
.................................................................................................................................................................................................................................GGTGTGGGTGG-GGGTGGGG----------------------------A...............................................................................................................................................................................2030.331000001
.................................................................................................................................................................................................................................GGTGTGGGTGG-GGGTGGGG----------------------------................................................................................................................................................................................1930.331000001
droGri2
GAAT---T---TGTGAATT-TGT--------------------------------------A-----------------T----GTGTGTGTGAAC-----------------------------------TGGAGC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads

Generated: 05/18/2015 at 11:07 AM