ID:

dsi_12835

 Coordinate:

2r:6076741-6077025 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

Flybase annnotation

three_prime_UTR [2r_6076979_6077026_-]; CDS [2r_6077027_6077329_-]; exon [2r_6076979_6077329_-]

No Repeatable elements found

Sense Strand Reads

#################################################################################################------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
CAAACTGGACGGAGAACCAGTCGTGCTCAACGAGGAGCCGCAGCTTTAAGGTATATAAGCCAGAGAGATTAGGTTTTCCATGCGAATTTTCATAGCAAAAAACAAAAAAAATAAAATGAAAAATAGTGAAAGGTAAATAAAACATATACTATTTAGATATCGGTTTCGTATTTAGATTTTTATTTTATATATTAGTTTATGTAACTGGTCAGATGGACTAGTAAGTATTGCGGCCTTGGGAGGATTCAAATGTCTGAAATTAATTGTTTATTGTTTATTAATGGATTCATTTTTAGAGAATACTAATTGATTCTAACCTTTTGGGCGATTGACAGCAATCCCTCGTAGGTGGCTCGACCAGACTGATTGACCAAGTTGTGGAACA
**************************************************.(((((((((....((((......))))..(((...........))).............((((((((((((.(((((....((.......))...)))))((((((((.((....))))))))))))))))))))))......)))))))))(((((((.....)))))))..((....((.((..((..(((.((((...(((((((......((((((((.....))))))))....))))))).........)))).)))..))....)).))....))..************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553487
NRT_0-2 hours eggs
 SRR618934
dsim w501 ovaries
 SRR553485
Chicharo_3 day-old ovaries
 SRR553488
RT_0-2 hours eggs
 M023
head
 SRR553486
Makindu_3 day-old ovaries
 GSM343915
embryo
 M024
male body		 SRR902008
ovaries
....................................................................................................................................................................................................................ATCGACTAGTTAGTACTGCGG........................................................................................................................................................ 21 3 1 2.00 2 2 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................................ATCGACTAGTTAGTACTGCG......................................................................................................................................................... 20 3 5 2.00 10 7 0 0 2 1 0 0 0 0
...................................................................................................................................................................................................................................TTTCGGCCTTGGGAGG.............................................................................................................................................. 16 1 2 1.50 3 3 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................................ATCGACTAGTTAGTACTGC.......................................................................................................................................................... 19 3 10 1.50 15 14 0 0 1 0 0 0 0 0
.......................................................................................................................................................................................................................................................................................................................................................CGTAGGTGGCGGGACCAGA....................... 19 2 1 1.00 1 0 1 0 0 0 0 0 0 0
..............................................TAAGGTATATAAGCCAGAGAGATTAGGTTT..................................................................................................................................................................................................................................................................................................................... 30 0 1 1.00 1 0 0 1 0 0 0 0 0 0
.....................................................................TAGGTTTAACTTGCGAATTTTCA..................................................................................................................................................................................................................................................................................................... 23 3 2 0.50 1 1 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................................TCGACTAGTTAGTACTGCGG........................................................................................................................................................ 20 3 2 0.50 1 0 0 1 0 0 0 0 0 0
.....TGGACGGAGAACTAGT............................................................................................................................................................................................................................................................................................................................................................................ 16 1 2 0.50 1 0 1 0 0 0 0 0 0 0
......................................................................................................................................................................................................................CGACTAGTTAGTACTGCGG........................................................................................................................................................ 19 3 6 0.33 2 2 0 0 0 0 0 0 0 0
............................................................................................................TAATAAAATGCAAAATAGTGAGA.............................................................................................................................................................................................................................................................. 23 3 3 0.33 1 1 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................................................................................TTTAGTGTTTATTAATGCATT.................................................................................................. 21 2 4 0.25 1 0 1 0 0 0 0 0 0 0
.....TGGACGGAGAAGCAGT............................................................................................................................................................................................................................................................................................................................................................................ 16 1 4 0.25 1 0 1 0 0 0 0 0 0 0
.....................................................................................................................................................................................................................TCGACTAGTTAGTACTGC.......................................................................................................................................................... 18 3 20 0.20 4 4 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................................TCGACTAGTTAGTACTGCG......................................................................................................................................................... 19 3 10 0.20 2 2 0 0 0 0 0 0 0 0
........................................................................................................................................................................................................................................................................................ATGGATTCATTTTTAAA........................................................................................ 17 1 15 0.20 3 2 0 0 1 0 0 0 0 0
........................................................................................................................AAATAATGAAAGGTAAATATA.................................................................................................................................................................................................................................................... 21 2 5 0.20 1 0 0 0 0 0 0 1 0 0
...................................................TATTTAAGCCAGAGAG.............................................................................................................................................................................................................................................................................................................................. 16 1 6 0.17 1 1 0 0 0 0 0 0 0 0
................................................AGGTATATAAGCGTGA................................................................................................................................................................................................................................................................................................................................. 16 2 20 0.15 3 0 0 0 3 0 0 0 0 0
.......................................................................................................................................................................................................TGAAACTGGTCACATGAACT...................................................................................................................................................................... 20 3 7 0.14 1 0 0 0 0 1 0 0 0 0
............................................................CAGAGAGACTAGGACTTCCA................................................................................................................................................................................................................................................................................................................. 20 3 7 0.14 1 0 0 0 0 0 1 0 0 0
.................................................................................................................................................................................TTTTGTTTTATATCGTAGTTTAT......................................................................................................................................................................................... 23 3 8 0.13 1 0 0 1 0 0 0 0 0 0
............................................................CAGAGAGACTAGGACTTCC.................................................................................................................................................................................................................................................................................................................. 19 3 9 0.11 1 0 0 0 0 0 1 0 0 0
.....TGGACGGAGAACTCGTC........................................................................................................................................................................................................................................................................................................................................................................... 17 2 19 0.11 2 0 2 0 0 0 0 0 0 0
...........................................................................................................................................................................................................................................TTGGGAGGATTGAAATATCA.................................................................................................................................. 20 3 10 0.10 1 0 0 0 0 1 0 0 0 0
...................................................................................................................................................................................................................................TCTCGGCCTTGGGAGG.............................................................................................................................................. 16 2 20 0.10 2 1 0 0 1 0 0 0 0 0
.......................................................................................................................................................................................................TGAAACTGTTCACATGGACT...................................................................................................................................................................... 20 3 11 0.09 1 0 0 0 0 0 0 0 1 0
.....................................................................................................................................................................................................................................................................................................................................................................CCACACGGATTGACCAA........... 17 2 12 0.08 1 0 0 0 1 0 0 0 0 0
................................................................................................................................................................................................................................GTTTTGCGACCTTGGGA................................................................................................................................................ 17 2 13 0.08 1 0 0 0 0 0 1 0 0 0
........................................................................................................................................................................................................GACACTGTTCAGATGGACT...................................................................................................................................................................... 19 3 16 0.06 1 0 0 0 0 0 0 1 0 0
.............................................TTAAGGCATATAAGC..................................................................................................................................................................................................................................................................................................................................... 15 1 19 0.05 1 0 0 0 1 0 0 0 0 0
.......................................................................................TTTAATAGGAAAAGACAAAAAA.................................................................................................................................................................................................................................................................................... 22 3 20 0.05 1 0 0 0 0 0 0 0 0 1
...................CGCGTGCTCAACGAGGA............................................................................................................................................................................................................................................................................................................................................................. 17 2 20 0.05 1 1 0 0 0 0 0 0 0 0
.....TGGACTGAGAACCAGT............................................................................................................................................................................................................................................................................................................................................................................ 16 1 20 0.05 1 0 1 0 0 0 0 0 0 0
............................................................................................................................................................................................................................................................................................................................................GAGCAATTCCTCGGAGGT................................... 18 3 20 0.05 1 0 1 0 0 0 0 0 0 0
........................................................................................................................................................................................................GAAACTGGTCACATGAACT...................................................................................................................................................................... 19 3 20 0.05 1 0 0 0 0 0 0 0 1 0
........................................................................................................................................................................................................................................................................................................................................................TTAGGGGGCTCGACCA......................... 16 2 20 0.05 1 0 0 0 0 0 1 0 0 0
...........................................................................................................................................................................................................................................TTGGGAGGATTGCAATATC................................................................................................................................... 19 3 20 0.05 1 0 0 0 0 1 0 0 0 0
.......................................................................................................................AAAATAGTGACGGGTAA......................................................................................................................................................................................................................................................... 17 2 20 0.05 1 0 0 0 0 0 1 0 0 0

Anti-sense strand reads

GTTTGACCTGCCTCTTGGTCAGCACGAGTTGCTCCTCGGCGTCGAAATTCCATATATTCGGTCTCTCTAATCCAAAAGGTACGCTTAAAAGTATCGTTTTTTGTTTTTTTTATTTTACTTTTTATCACTTTCCATTTATTTTGTATATGATAAATCTATAGCCAAAGCATAAATCTAAAAATAAAATATATAATCAAATACATTGACCAGTCTACCTGATCATTCATAACGCCGGAACCCTCCTAAGTTTACAGACTTTAATTAACAAATAACAAATAATTACCTAAGTAAAAATCTCTTATGATTAACTAAGATTGGAAAACCCGCTAACTGTCGTTAGGGAGCATCCACCGAGCTGGTCTGACTAACTGGTTCAACACCTTGT
**************************************************.(((((((((....((((......))))..(((...........))).............((((((((((((.(((((....((.......))...)))))((((((((.((....))))))))))))))))))))))......)))))))))(((((((.....)))))))..((....((.((..((..(((.((((...(((((((......((((((((.....))))))))....))))))).........)))).)))..))....)).))....))..************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553488
RT_0-2 hours eggs
 M024
male body		 M053
female body
 GSM343915
embryo
 SRR618934
dsim w501 ovaries
 M023
head
 SRR902009
testis
 SRR553486
Makindu_3 day-old ovaries
....................AGCACCAGATGCTCCTCGG.......................................................................................................................................................................................................................................................................................................................................................... 19 2 2 1.50 3 3 0 0 0 0 0 0 0
....................AGCACCAGATGCTCCTCG........................................................................................................................................................................................................................................................................................................................................................... 18 2 8 1.25 10 10 0 0 0 0 0 0 0
...................................................................................................................................................................................................................................................................................................................................................GGGAGTATCCCCCGAGCTTG.......................... 20 3 2 1.00 2 0 2 0 0 0 0 0 0
....................................................................................................................................................................................................................................................................................................................................................GGAGTATCCCCCGAGCTTG.......................... 19 3 3 1.00 3 0 0 2 1 0 0 0 0
.....................................................................................................................................................................................................................................................................................................................................................GGGCATCCACAGAGCTG........................... 17 2 2 0.50 1 1 0 0 0 0 0 0 0
....................AGCACCAGATGCTCCTCGGG......................................................................................................................................................................................................................................................................................................................................................... 20 3 5 0.40 2 2 0 0 0 0 0 0 0
...................GAGCACCAGATGCTCCTCGG.......................................................................................................................................................................................................................................................................................................................................................... 20 3 4 0.25 1 1 0 0 0 0 0 0 0
..................TCAGCCCGAGTTGCCCCTAG........................................................................................................................................................................................................................................................................................................................................................... 20 3 6 0.17 1 0 0 0 0 1 0 0 0
.....................................................................................TGAAAGAATCGTTTTTAGTTTT...................................................................................................................................................................................................................................................................................... 22 3 6 0.17 1 0 0 0 1 0 0 0 0
.....................GCACCAGATGCTCCTCG........................................................................................................................................................................................................................................................................................................................................................... 17 2 20 0.15 3 3 0 0 0 0 0 0 0
..........CCTATTGGTCGGCACAAGT.................................................................................................................................................................................................................................................................................................................................................................... 19 3 17 0.12 2 0 1 0 0 0 1 0 0
................................................................................................................................................................................................................................................................................................................................ACCCCGCTAGCTGTCCTTA.............................................. 19 3 14 0.07 1 1 0 0 0 0 0 0 0
....................AGCACCAGATGCTCCTTGG.......................................................................................................................................................................................................................................................................................................................................................... 19 3 15 0.07 1 1 0 0 0 0 0 0 0
............................................................................................................................................................................................................................................................................................................ATAATTAACTAAGATCCGAA................................................................. 20 3 17 0.06 1 0 0 0 0 0 0 1 0
...........................................................................................................................................................................................................TGACCAGTCTAAGTGCTCA................................................................................................................................................................... 19 3 18 0.06 1 0 0 0 0 0 0 0 1
.....................................................................................................................................................................................................................................................................................................................................................GAGTATCCCCCGAGCTTG.......................... 18 3 19 0.05 1 0 0 1 0 0 0 0 0
...TGCCCTGCCTCTTGG............................................................................................................................................................................................................................................................................................................................................................................... 15 1 20 0.05 1 0 0 0 0 1 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim2 2r:6076691-6077075 - dsi_12835 CAAACTGGACGGAGAACCAGTCGTGCTCAACGAGGAGCCGCAGCTTTAAGG--------------------------------TATATAAGCCAGAGAGATTAGGTTTTCCATGCGAATTTTCATAGCAAAAAACAAAAAAA--------------------------------------------------------ATAAAAT---GAAAAATAGTGAAAGGTAAAT----AAAACATATACTATTT-AGATATCGGTTTCGTATTTAGATTTTTATTTTATATATT--------------------------------------------------------AGTTTATGTAACTGGTCAGATGGACTAGTAAGTATTGCGGCCTTGGGAGGATTCAAA--TGTCTGAA---------------------------------------------------------------------------------------------------------ATTAATTGTT-T------ATT-GTTTATTAATGGATTCATTTTTAGAG---------------------------------------------------------------------------AATACT---AATTGATTCTAACCTTTTGGGCGATTGACAGCAATCCCTCGTAGGTGGCTCGACCAGACTGATTGACCAAGTTGTGGAACA
droSec2 scaffold_1:2904780-2905163 - CAAACTGGACGGAGAACCAGTCGTGCTCAACGAGGAGCCGCAGCTTTAAGG--------------------------------TATATACGCTAGAGAGATTTGGTTTTCCATGCGAATTTTCATAGCAAAAAACAAA----------------------------------------------------------AAATAAACT---GAAAAATAGTGAAAGGTAAAT----AAAACATATACTATCTGAAAAATCAGTTTAGAATTTAAACTTTTATTTTAAATATT--------------------------------------------------------AGTTTATGTAACTGGTCAGTTGGACTAGTAAGTATTGCGGCCTTAGGAGGATTCAAA--TGTCTGAA---------------------------------------------------------------------------------------------------------ATGAATTGTT-T------AGT-ATTCATTAATGGATTTATTTTTAGAG---------------------------------------------------------------------------AATACT---AATCGATTCTAACCTCTTGGGCGATTTTCAGCAATCCCTCGTAGGTGGCTCGACCAGACTGATTGACCAAGTTGTGAAACA
dm3 chr2R:5282556-5282949 - CAAACTGGACGGAGAACCAGTCGTGCTCAACGAGGAGCCGCAGCTTTAAGTCT----GA---------TGGCCATTCGGTTTATATGGATGACGGAGAGATTGGGTTTTCCATGCGAACTTTCATAGCAGAAAACAAA----------------------------------------------------------AAAAAAAATCTTGAAAAATA------------C----ACAACATGTACTATTTTAGAAATCAGTTTCGTCTTTAGATTTTTATTTAAAATATT--------------------------------------------------------AGTTTATCTAACTGGTCAGTTGGACTAGTAAGTATTGCGGCCTTAGGAGGATTCAAA--TGTCTGCA---------------------------------------------------------------------------------------------------------ATGAATTGTA-A------ATT-ATTCATTAAAGGATTCATTTTTAGAG---------------------------------------------------------------------------AATACT---AATTAAATCTAACCTCTTGGGCGATTTTCAGCAGTCCCTCGTAGCTGGCTCGACCCGACTGATTGACCAAGTTGTGGAATA
droEre2 scaffold_4929:17382475-17382888 + TAAACTGGACGGCGAACCAGTCGTGCTCAACGAGGAGCCTCAGCTCTAAAATC----GG---------TGGCTATTCGGTTGTAATGGATGTTGAAGAGATTGGGTTACCCATACGAATA--GATGAGAAAATACAGAAAACAGAAACAGGT------TTATAATTGCATTTCTATT---------------------------------GAAATATTGCACAATAAAT----AGAAGCAATGCAA---------------------------------------------------ATGTGGTGACG-ATAATACATGTCTTCTA-----AGCTTATGCGAAATA-TTTGTAAAACAGGTCAGTTGGACGAGCAAGAATTGCGGCTTTGGGATGATTCAAA--TGCCTGAA---------------------------------------------------------------------------------------------------------ACCAGATATA-G------CAT--------AATGGATTAGCTGTTGGAT---------------------------------------------------------------------------AATACT---AATCGTATCTAACCTCCTTGGTGATTTTCAGCAGTCCTTCGTAGGTGTCTCGACCGGACTGATTGACCAGGTTGTGAAACA
droYak3 2L:17929685-17930122 - TAAACTGGACGGAGAACCAGTCGTGCTCAACGAGGAGCCTCAGCTCTAAGGCC----AGCTCAGCTGATGGCCATCCGGTTTGTATGGACGTTGATGAGATTGGGATTCCCATACGAAACTTCTGTGCTTACA------------------------------------------------------------------------------AATAAATAAAAGATTATT----AAAACATATACTTTTTCAGAAAACCGTTTTATATTCAGATTATAAA--------AGAAATACAAATGTGGTACCACATAGTACATATCATCAA-----GGTTTACACGAAATAGTTTATAGAACAGGCGAGTTGGACCAGAAAGAACTGCGTCTTTAGGAGGATTCAAA--CTTCTGAA---------------------------------------------------------------------------------------------------------ATCAAAAATT-T------AGA-ACGTAATGAATGAACGAGAAATGAAC---------------------------------------------------------------------------AATACT---AATCGGATCTAACCTCTTGGGCGATTTTCAGCAGTCCCTCGTAGGTGTCTCGACCGGACTGATTGACCAAGTGGTGAAACA
droEug1 scf7180000409461:373688-373886 + TTCATAT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TATTTAAT--------------------------------------------------------TAATTCATTCATTGTTC-ATTTAATGAGGACAGACTGTGGCCCTGGGCGGTTTCAAA--TGCCTGAA---------------------------------------------------------------------------------------------------------ATAGGATTTC-A------TAT-ATT-------CAAAATAAAAGTTTAT---------------------------------------------------------------------------AAAATA---AGTTTCTTCTTACGTTTTGTGCGATTTTCAGCAGACTCTCGTAGGTGGCATGACCAGTCTGCTTGACCATGCCGTGGAACA
droBia1 scf7180000301506:1438162-1438564 + TAAACTTGACGGCGAACCAGTAGTGCTGAATGAGGAGCCACAGCTTTAAAACCATCGAGTTCAA---------AT----------TGTATGTAAAAAAAAACGCGTTTTATGTAAAAAAA--AA--------------------------TCTTTCCATTATAATTTTATTCGAAGTTTTATATTACGAAAATAAAAAACCAATG---GTAAGATAC---------------------------------------------------------------------------------TATGGTAACC-TTATAGCTTTTCCGGGAGGGTAAATTGACAT-ATATAGATTACAAAATAATCTAGATATCTGAAAAAGAACTGCGGTTCTGCTATTTTTTTAA--TGCCTGAA---------------------------------------------------------------------------------------------------------ATTAAAAATG-GATAATAATG-ATA-------ATAATTAATAGTTAAG---------------------------------------------------------------------------AAAATC---GACGGAAACGAACCCTCTGAGCGATTTCCAGTAGACCTTCATAGGTGGCATGACCCGTCTGCTTAACCATGTCCTGGAACA
droTak1 scf7180000415401:313633-313938 - TAAACTCGACGGAGAGCCGGTAGTGCTCAATGAGGAGCCACAGCTTTAAAGCA----AGTTCAA---------GTTTTATTTTGATAAAGGGTCAAGA---------------------------------------------------------------------------------------------------------------------AT---------------------------------------------------------------------------------CATGATAAGC-TTG----------------------------------------------------------------------------GATGTATCTTTTGA--GGC----------------------AGA-----------AATTA-----CTTACTTATAATTGGACTATATGCAAAAATCGTATTTACATTTGATTTTATATAATTGTCTTAAAAAAA-----TG-------TGTCTTGAAT---------TCG-------AA---------------------------TGATAAATATTTTTAAATGAATTTGAAAATATATAATTTT--------------------ATCTTCACTCATTAAAGAATCA----------AGTGAAGACATT-----------TTTTTTTAATGCCAATTATTT
droEle1 scf7180000491338:527673-527933 - AAAT-AA----------------------------------------------------------------------------AATGTACATTAGTTAAACTAGATATACCCAG------------------------------------------------------------------------------------------------------------------------------------CTA-AAGTTTCGGCTT---------------------------------------------------------------------AGTTCACAGGACATAGTTTACATAATAGCTGAGTCTCATGAGGAAAGACTGCGATTCTGGGCGCTTTCAAA--TGCCTAAA---------------------------------------------------------------------------------------------------------ATTACATTTT-C------ATA-AATTAAATAAAGTAT---------AA---------------------------------------------------------------AGTATTGATTTCAAATCA---AGGAAAAACTAACCTTTTGTGCGATTTTCAGCAGGCCCTCGTAGGTTGCATGACCCGTCTGCTTGACCATGCCGTGGAACA
droRho1 scf7180000777864:34244-34494 + CATAAAAGAAGAAAAG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAATATAGTTATCAATAAATAACAAAAACAATAACAATT-------------------TAAAATATTTATGTTACATATT--------------------------------------------------------TGC---------------AATTCATGAAGGAATATTCCGATCCGGGGAGCTTTGGAA--GGCCTGAA---------------------------------------------------------------------------------------------------------ATTAAAATTT-T------GTT-AGTGGCCGAAGCAAATGT---GTTAC---------------------------------------------------------------------------AATTCA---AATAAAAGCAGACCTTTTGTGCGACTTTCAGCAGATCCTCGTAGGTGGCATGTCCCGTCTGCTTGACCATGCCGTGGAACA
droFic1 scf7180000454051:346-545 - T-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTAAGTAACAGCTGAGTCTCATGAGGAAAGACTGCGATTCTGGGCGGTTTCAAA--TGCCTGAA---------------------------------------------------------------------------------------------------------ACCAAAAATA-G------AGA-AAA--------------AGA-------AACGAGTAAATA-------TCTTTCATCCATTAAATC-------------------------------------AGTCAA---AATAAGAACCCACCTTTTGTGCGACTTTAAGCAGACCCTCGTAGGTGGCATGACCCGTCTGCTTGACCATGCCGTGGAACA
droKik1 scf7180000302412:488877-489028 + GACC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTGGCTGTCCTCAAA--GGCCTGAA---------------------------------------------------------------------------------------------------------ATGAAGAGTCGT-------ATTTTCAGTTGGTGCGATCATTTACAGAT---------------------------------------------------------------------------TATTCA---AA---TGACCAACCTTTTGTGCGATTTTTAGCAATCCTTCGTAGGTGGCTTGGCCTGTCTGCTTCACCATGCCATGGAACA
droAna3 scaffold_12916:5434443-5434578 + T------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCAAA--TGTCTGAA--AATAAAATTC-----AAA---------------------------------------------------------------------------------------------------------A----------------------------GATGAGTAAAACTGGACGTTCCTTT-----------------------------------------------------GT---CCTTTTTTCTCACCTTCTTAGCAATCTTCAGCAGACCGTCGTAAGTAGCCTGCCCCGTCTGCTTCACCATTTCATGGAACA
droBip1 scf7180000396615:496041-496190 - CTTC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGAGTTTCCAGATGAGCCTGAA---------------------------------------------------------------------------------------------------------ATGAA-----GA-------GGATTTGGTT---------TTT-------AA---------------------------CGAAAAATCTTCGAA-------------------------------AATCTA---ACAAGAAACATACCTTTTCTGCTACTTTGAGAAGTCCATCGAAGCTGCTCTGGCCCGTCTCCATCACCATGCCATGGAAGA
dp5 4_group3:682808-682955 + T----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGGCGTCTTCAAA--GGCCTGAACAAATAAATGTT-----GAAT----------------------------------------------------------------------------------------------GT-------AAATTCAGTT---------ATTT-------AAAGAGTAA------------------------------------------------------------------ATAT----AACATGGGCTTACCTTTTGTGCGACCTTCAGTAGGCCATCGTATGTGGCCTGACCCGTCTGCTTGACCATGCCGTGGAACA
droPer2 scaffold_1:2158966-2159113 + T----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGGCGTCTTCAAA--GGCCTGAACAAATAAATGTT-----GAAT----------------------------------------------------------------------------------------------GT-------AAATTCAGTT---------ATTT-------ACCGAGTAA------------------------------------------------------------------ATAT----AACATGGGCTTACCTTTTGTGCGACCTTCAGTAGGCCATCGTATGTGGCCTGACCCGTCTGCTTGACCATGCCGTGGAACA
droWil2 scf2_1100000004510:735037-735188 + TAAACTGGATGGCGAACCAGTTGTTCTCAATGAGGAGCCACAATTATAGAGA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAATTTTAAA--TATATATC--ATGAATA---AATATATAAATATAAATATAT--------------------------------------------------------------------------------------------A----------------------------GATGAATAAA------------------------------------------------------------------TAT----A---------------------------------------TTATTTGGACATACATATATGTATGTATATACTAT--ATGT
droVir3 scaffold_12855:9914645-9914820 - TTGATTTTAGGCAGTTT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TT--------------------------------------------------------AGC---------------------------------------TTCTGTGATTCCAAATGGGCCTGTA--AATGGATGAT-----GGG-----------AATTA------------------------------------------------------------------------------------------------------------CTTAC------------------------------ATATATGCATGT---T--GAT----------------------------ATTTTGGGAATTGGTTATTTACCTTCTCCGCAACTTTTAACAGATTTTCGAAGGTGCTCTGCCCCGTCTCCATGACCATACTGTGAAAGA
droMoj3 scaffold_6500:9009235-9009388 + T------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCGAA--TGCCTAAA--AATAAATTTT-----TAA-----------AAATATTTTA-----------------------------------------------------------------------------------AATTTCATT---------------TTGATAA---------------------------CACTAAATTTGCAGA----G--------------------------ACTTT----AAAATAAA-CTACCTTCTTGGCAACTTGGAACAGATTGTCGTAAGTTGCTTTGCCCGTCTGCTTGACCATGTCGTTGAACA
droGri2 scaffold_3277:699-863 - TGAG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAGATTCAAA--TGCCTGTA--AATAAAA---AGAATATATATATATATATATATATTTGT-----------------------------------------------------------------------------------AATTGAA--T---------TTT---------------------------------------------------AACCAATTG----------------------AGAAAT---GCATTAATTTTACCTGCTTGGCAACCAACTGCAGATTTTCATAGGTTGATTTGCCCGTCTGCTTGACCATATCATGGAAAA

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
CAAACTGGACGGAGAACCAGTCGTGCTCAACGAGGAGCCGCAGCTTTAAGG--------------------------------TATATAAGCCAGAGAGATTAGGTTTTCCATGCGAATTTTCATAGCAAAAAACAAAAAAA--------------------------------------------------------ATAAAAT---GAAAAATAGTGAAAGGTAAAT----AAAACATATACTATTT-AGATATCGGTTTCGTATTTAGATTTTTATTTTATATATT--------------------------------------------------------AGTTTATGTAACTGGTCAGATGGACTAGTAAGTATTGCGGCCTTGGGAGGATTCAAA--TGTCTGAA---------------------------------------------------------------------------------------------------------ATTAATTGTT-T------ATT-GTTTATTAATGGATTCATTTTTAGAG---------------------------------------------------------------------------AATACT---AATTGATTCTAACCTTTTGGGCGATTGACAGCAATCCCTCGTAGGTGGCTCGACCAGACTGATTGACCAAGTTGTGGAACASizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
..............................................TAAGG--------------------------------TATATAAGCCAGAGAGATTAGGTTT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................3011.00100000010000000000
droSec2
CAAACTGGACGGAGAACCAGTCGTGCTCAACGAGGAGCCGCAGCTTTAAGG--------------------------------TATATACGCTAGAGAGATTTGGTTTTCCATGCGAATTTTCATAGCAAAAAACAAA----------------------------------------------------------AAATAAACT---GAAAAATAGTGAAAGGTAAAT----AAAACATATACTATCTGAAAAATCAGTTTAGAATTTAAACTTTTATTTTAAATATT--------------------------------------------------------AGTTTATGTAACTGGTCAGTTGGACTAGTAAGTATTGCGGCCTTAGGAGGATTCAAA--TGTCTGAA---------------------------------------------------------------------------------------------------------ATGAATTGTT-T------AGT-ATTCATTAATGGATTTATTTTTAGAG---------------------------------------------------------------------------AATACT---AATCGATTCTAACCTCTTGGGCGATTTTCAGCAATCCCTCGTAGGTGGCTCGACCAGACTGATTGACCAAGTTGTGAAACASizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
No Reads
dm3
CAAACTGGACGGAGAACCAGTCGTGCTCAACGAGGAGCCGCAGCTTTAAGTCT----GA---------TGGCCATTCGGTTTATATGGATGACGGAGAGATTGGGTTTTCCATGCGAACTTTCATAGCAGAAAACAAA----------------------------------------------------------AAAAAAAATCTTGAAAAATA------------C----ACAACATGTACTATTTTAGAAATCAGTTTCGTCTTTAGATTTTTATTTAAAATATT--------------------------------------------------------AGTTTATCTAACTGGTCAGTTGGACTAGTAAGTATTGCGGCCTTAGGAGGATTCAAA--TGTCTGCA---------------------------------------------------------------------------------------------------------ATGAATTGTA-A------ATT-ATTCATTAAAGGATTCATTTTTAGAG---------------------------------------------------------------------------AATACT---AATTAAATCTAACCTCTTGGGCGATTTTCAGCAGTCCCTCGTAGCTGGCTCGACCCGACTGATTGACCAAGTTGTGGAATASizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
.....TGGACGGAGAACCAGTCGT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1918.0080000000000000000000000000000000000000000000000000000000003320000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....TGGACGGAGAACCAGTCGTG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2014.0040000000000000000000000000000000000000000000000000000000001300000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....TGGACGGAGAACCAGTCG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1813.0030000000000000000000000000000000000000000000000000000000002010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................TCCATGCGAACTTTCATAGCAGAAAACA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....TGGACGGAGAACCAGTCGTGC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................TTGGACTAGTAAGTATTGC...........................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................AGTCGTGCTCAACGAGGAGC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
............................................................................................................................TAGCAGAAAACAAA----------------------------------------------------------AAAAAAAATCTTGAA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2911.0010000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................TCAGTTGGACTAGTAAGTATTGC...........................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
.............................................................................................GGAGAGATTGGGTTTTCCATGCGAA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000
.........................CTCAACGAGGAGCCGCAGCTTTAAGTC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000
...................................................................................TATGGATGACGGAGAGATTGGGTTT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000
...........................................CTTTAAGTCT----GA---------TGGCCC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACTGATTGACCAAGTTG.......1811.0010000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....TGGACGGAGAACCAGTCGTGCT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........CGGAGAACCAGTCGTGCTCAACGAGGA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000
..........................TCAACGAGGAGCCGCAGCTTTAAGTT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................TCCATGCGAACTTTCATAGCAGAAAACAT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2911.0010000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............ACCAGTCGTGCTCAACGAGG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000
..AACTGGACGGAGAACCAGTCGTGC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
.........................................................................................................................TCATAGCAGAAAACAAA----------------------------------------------------------AA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................T----GA---------TGGCCATTCGGTTTATATGGAT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................TCATAGCAGAAAACAAA----------------------------------------------------------AAAAAAAATC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................TAAGTCT----GA---------TGGCCATTCGGTTTATA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................TCAGTTTCGTCTTTAGATTTTTATT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................TCAACGAGGAGCCGCAGCTTTAAGTCT----.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................TATATGGATGACGGAGAGATTGGG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................TCTTGAAAAATA------------C----ACAACATGTAC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGATTGACCAAGTTGTGTG...1930.3310000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droEre2
TAAACTGGACGGCGAACCAGTCGTGCTCAACGAGGAGCCTCAGCTCTAAAATC----GG---------TGGCTATTCGGTTGTAATGGATGTTGAAGAGATTGGGTTACCCATACGAATA--GATGAGAAAATACAGAAAACAGAAACAGGT------TTATAATTGCATTTCTATT---------------------------------GAAATATTGCACAATAAAT----AGAAGCAATGCAA---------------------------------------------------ATGTGGTGACG-ATAATACATGTCTTCTA-----AGCTTATGCGAAATA-TTTGTAAAACAGGTCAGTTGGACGAGCAAGAATTGCGGCTTTGGGATGATTCAAA--TGCCTGAA---------------------------------------------------------------------------------------------------------ACCAGATATA-G------CAT--------AATGGATTAGCTGTTGGAT---------------------------------------------------------------------------AATACT---AATCGTATCTAACCTCCTTGGTGATTTTCAGCAGTCCTTCGTAGGTGTCTCGACCGGACTGATTGACCAGGTTGTGAAACASizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTCTCGACCGGACTGATTGACCAGGT.........27134.003400000034
.......................................TCAGCTCTAAAATC----GG---------TGGCTATTCGGT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................28130.003010000029
............................................................................................................................................................................................................................................................................................................................................................................TTGGACGAGCAAGAATTGCGGCTT......................................................................................................................................................................................................................................................................................................................................................24126.002600000026
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTCGACCGGACTGATTGACCAGGT.........25120.002000000020
.......................................TCAGCTCTAAAATC----GG---------TGGCTATTCGGTTG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................30117.001700000017
.............................................................................................................................................................................................................................................................................................................................................................TGTAAAACAGGTCAGTTGGACGAGCA...................................................................................................................................................................................................................................................................................................................................................................26112.001200000012
..AACTGGACGGCGAACCAGTCGTGCT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................25111.001100000011
........................................CAGCTCTAAAATC----GG---------TGGCTATTCGGT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................27111.001100000011
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTCTCGACCGGACTGATTGACCAGG..........2619.0090000009
.......................................TCAGCTCTAAAATC----GG---------TGGCTATTCGG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2719.0092000007
........................................................................................................................................................................................................................................................................................................................................................................TCAGTTGGACGAGCAAGAATTGCGGCT.......................................................................................................................................................................................................................................................................................................................................................2719.0090000009
..........................................................................TTCGGTTGTAATGGATGTTGAAGAGAT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2717.0076000100
..........................................................................TTCGGTTGTAATGGATGTTGAAGAGA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2616.0062000004
TAAACTGGACGGCGAACCAGTCGTGCTC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2815.0050000005
...............................GAGGAGCCTCAGCTCTAAAATC----GG---------TGGC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2814.0040000004
..........................................................................TTCGGTTGTAATGGATGTTGAAGAGATT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2813.0030000003
.............................................................................................................................................................................................................................................................................................................................................................................TGGACGAGCAAGAATTGCGGCTTTGG...................................................................................................................................................................................................................................................................................................................................................2613.0033000000
.................................................................................................................................................................................................................................................TGCAA---------------------------------------------------ATGTGGTGACG-ATAATACATG...........................................................................................................................................................................................................................................................................................................................................................................................................................2613.0032000100
...........................................................................TCGGTTGTAATGGATGTTGAAGAGAT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2613.0032000001
.................................................................................................................................................................................................................................................................................................................................................TGCGAAATA-TTTGTAAAACAGGTCAGT.............................................................................................................................................................................................................................................................................................................................................................................2713.0033000000
..........................................................................................................................................................................................................................................................................................................TGTGGTGACG-ATAATACATGTCTTC......................................................................................................................................................................................................................................................................................................................................................................................................................2512.0021000001
.............................................................................................................................................................................................................................................................................................................................................................................TGGACGAGCAAGAATTGCGGCTTTG....................................................................................................................................................................................................................................................................................................................................................2512.0022000000
...........................................................................TCGGTTGTAATGGATGTTGAAGAGA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2512.0022000000
.........................................................................................................................................................................................................................................................................................................................................................................................................TGATTCAAA--TGCCTGAA---------------------------------------------------------------------------------------------------------ACCAGATA.............................................................................................................................................................................................................2512.0022000000
..........................TCAACGAGGAGCCTCAGCTCTAAAA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2512.0022000000
.....................................................................................TGGATGTTGAAGAGATTGGGTTACCCA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2712.0022000000
.....TGGACGGCGAACCAGTCGTGCTCAACG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0011000000
..............................CGAGGAGCCTCAGCTCTAAAATC----GG---------TG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0011000000
............................................................................................................................................................................................................................................................................................................................................................................................TGCGGCTTTGGGATGATTCAAA--TGCCTG................................................................................................................................................................................................................................................................................................................................2811.0011000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATA-G------CAT--------AATGGATTAGCTGTTGGAT---------------------------------------------------------------------------..........................................................................................2611.0010000100
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T---AATCGTATCTAACCTCCTTGGTGATTT......................................................2811.0011000000
.....................................................................................TGGATGTTGAAGAGATTGGGTTACC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000100
....................................................................................................................................................................................................................................................................................................................................................................CAGGTCAGTTGGACGAGCAAGAATTG............................................................................................................................................................................................................................................................................................................................................................2611.0010000100
....................................................................................................TTGGGTTACCCATACGAATA--GATGAGA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000001
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTCGACCGGACTGATTGACCAGGTTG.......2711.0011000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTAACCTCCTTGGTGATTTTCAGCA................................................2611.0011000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCTTGGTGATTTTCAGCAGTCCT...........................................2411.0011000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T--------AATGGATTAGCTGTTGGAT---------------------------------------------------------------------------AATAC.....................................................................................2511.0011000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAGGTGTCTCGACCGGACTGATTGAC..............2611.0011000000
..............AACCAGTCGTGCTCAACGAGGAGCC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0011000000
.........................................................................................................................................AAAACAGAAACAGGT------TTATAATTGCAT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0011000000
................................................................................................................................................................................................................................TAAAT----AGAAGCAATGCAA---------------------------------------------------ATGTGGTGA........................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0011000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAGGTGTCTCGACCGGACTGATTGACC.............2711.0011000000
.......................................................................................................................................................................................................................................................................................................................................................................................................GATGATTCAAA--TGCCTGAA---------------------------------------------------------------------------------------------------------ACCAGA...............................................................................................................................................................................................................2511.0011000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T---AATCGTATCTAACCTCCTTGGTGATT.......................................................2711.0011000000
..........................................................................TTCGGTTGTAATGGATGTTGAA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0011000000
....................................................................................................TTGGGTTACCCATACGAATA--GATGAGAA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.0011000000
.............................................................................................................................................................................................................................................................................................................................................................................TGGACGAGCAAGAATTGCGGCTTTGGGA.................................................................................................................................................................................................................................................................................................................................................2811.0011000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................A---------------------------------------------------------------------------------------------------------ACCAGATATA-G------CAT--------AATGGATTAGCTG...........................................................................................................................................................................2811.0011000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAGGTGTCTCGACCGGACTGATTGACCA............2811.0011000000
.........................................................................................................................................................................................................................TGCACAATAAAT----AGAAGCAATGCAA---------------------------------------------------ATG..............................................................................................................................................................................................................................................................................................................................................................................................................................................2811.0011000000
...............ACCAGTCGTGCTCAACGAGGAGCCTCA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000100
..AACTGGACGGCGAACCAGTCGTGC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0011000000
....................................................................TGGCTATTCGGTTGTAATGGATGT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000001
................CCAGTCGTGCTCAACGAGGAGCCTCA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0011000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATA-G------CAT--------AATGGATTAGCTGTTGGA......................................................................................................................................................................2611.0011000000
TAAACTGGACGGCGAACCAGTCGTGC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0011000000
.....................CGTGCTCAACGAGGAGCCTCAGCTC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0011000000
...................................................TC----GG---------TGGCTATTCGGTTGTAATGGAT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0011000000
.................................................................................GTAATGGATGTTGAAGAGATTGGGTT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0011000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAACCTCCTTGGTGATTTTCAGCAGTCC............................................2811.0011000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCTTCGTAGGTGTCTCGACCGGAC......................2511.0011000000
.................................................................................................................................................................................................................................................TGCAA---------------------------------------------------ATGTGGTGACG-ATAATACATGT..........................................................................................................................................................................................................................................................................................................................................................................................................................2711.0011000000
......................................................................................................GGGTTACCCATACGAATA--GATGAGAAA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0011000000
.......................................TCAGCTCTAAAATC----GG---------TGGC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0011000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTCAGCAGTCCTTCGTAGGTGTCT...............................2611.0011000000
.....................................................................................................................................................................................................................................................................................................................................A-----AGCTTATGCGAAATA-TTTGTAAAA......................................................................................................................................................................................................................................................................................................................................................................................2511.0011000000
................................................................................................................................................................................................................................TAAAT----AGAAGCAATGCAA---------------------------------------------------ATGTGG...........................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0011000000
...............ACCAGTCGTGCTCAACGAGGAGCCT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0011000000
........................................................................................................................................................................................................................................................................................................................................................................TCAGTTGGACGAGCAAGAATTGCGGCTT......................................................................................................................................................................................................................................................................................................................................................2811.0011000000
............................................................................................................................................................................................................................................................................................................................................................................................................TTCAAA--TGCCTGAA---------------------------------------------------------------------------------------------------------ACCAGATATA-G------CA.................................................................................................................................................................................................2711.0011000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGTGATTTTCAGCAGTCCTTCGTAG.....................................2611.0011000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAGCTGTTGGAT---------------------------------------------------------------------------AATACT---AATCGT...........................................................................2411.0011000000
.............................................................................................................................................................................................................................................................................................................................................................................................................TCAAA--TGCCTGAA---------------------------------------------------------------------------------------------------------ACCAGATATA-G------CA.................................................................................................................................................................................................2611.0011000000
.........................................................................................TGTTGAAGAGATTGGGTTACCCA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000001
............................................................................................................................................................................................................................................................................................................................................................................................TGCGGCTTTGGGATGATTCAAA--TGCC..................................................................................................................................................................................................................................................................................................................................2611.0011000000
.................................................................................................................................................................................................................................................TGCAA---------------------------------------------------ATGTGGTGACG-ATAATACATGTCT........................................................................................................................................................................................................................................................................................................................................................................................................................2911.0011000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGATTTTCAGCAGTCCTTCGTAGG....................................2411.0011000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGGTGATTTTCAGCAGTCCTTCG........................................2411.0011000000
..........................................................................................................TACCCATACGAATA--GATGAGAAAATAC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0011000000
.........................................................................................................................................................................................................................................................................................................................................................................................................TGATTCAAA--TGCCTGAA---------------------------------------------------------------------------------------------------------ACCAGATAT............................................................................................................................................................................................................2611.0011000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACT---AATCGTATCTAACCTCCTTGGTGAT........................................................2911.0011000000
........................................................................TATTCGGTTGTAATGGATGTTGAAGAGA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.0010000001
.....TGGACGGCGAACCAGTCGTGCTCAACGA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.0011000000
....................................................................TGGCTATTCGGTTGTAATGGATGTT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0011000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATCGTATCTAACCTCCTTGGTGA.........................................................2411.0011000000
..............................................TAAAATC----GG---------TGGCTATTCGGTTGTAA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0011000000
.........................................................................................................TTACCCATACGAATA--GATGAGAAAA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0011000000
............................................................................................................................................................................................................................................................................................................................................................................TTGGACGAGCAAGAATTGCGGCTTT.....................................................................................................................................................................................................................................................................................................................................................2511.0011000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACCTCCTTGGTGATTTTCAGCAGTCCT...........................................2811.0011000000
droYak3
TAAACTGGACGGAGAACCAGTCGTGCTCAACGAGGAGCCTCAGCTCTAAGGCC----AGCTCAGCTGATGGCCATCCGGTTTGTATGGACGTTGATGAGATTGGGATTCCCATACGAAACTTCTGTGCTTACA------------------------------------------------------------------------------AATAAATAAAAGATTATT----AAAACATATACTTTTTCAGAAAACCGTTTTATATTCAGATTATAAA--------AGAAATACAAATGTGGTACCACATAGTACATATCATCAA-----GGTTTACACGAAATAGTTTATAGAACAGGCGAGTTGGACCAGAAAGAACTGCGTCTTTAGGAGGATTCAAA--CTTCTGAA---------------------------------------------------------------------------------------------------------ATCAAAAATT-T------AGA-ACGTAATGAATGAACGAGAAATGAAC---------------------------------------------------------------------------AATACT---AATCGGATCTAACCTCTTGGGCGATTTTCAGCAGTCCCTCGTAGGTGTCTCGACCGGACTGATTGACCAAGTGGTGAAACASizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
No Reads
droEug1
TTCATAT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TATTTAAT--------------------------------------------------------TAATTCATTCATTGTTC-ATTTAATGAGGACAGACTGTGGCCCTGGGCGGTTTCAAA--TGCCTGAA---------------------------------------------------------------------------------------------------------ATAGGATTTC-A------TAT-ATT-------CAAAATAAAAGTTTAT---------------------------------------------------------------------------AAAATA---AGTTTCTTCTTACGTTTTGTGCGATTTTCAGCAGACTCTCGTAGGTGGCATGACCAGTCTGCTTGACCATGCCGTGGAACASizeHit CountTotal NormTotal
No Reads
droBia1
TAAACTTGACGGCGAACCAGTAGTGCTGAATGAGGAGCCACAGCTTTAAAACCATCGAGTTCAA---------AT----------TGTATGTAAAAAAAAACGCGTTTTATGTAAAAAAA--AA--------------------------TCTTTCCATTATAATTTTATTCGAAGTTTTATATTACGAAAATAAAAAACCAATG---GTAAGATAC---------------------------------------------------------------------------------TATGGTAACC-TTATAGCTTTTCCGGGAGGGTAAATTGACAT-ATATAGATTACAAAATAATCTAGATATCTGAAAAAGAACTGCGGTTCTGCTATTTTTTTAA--TGCCTGAA---------------------------------------------------------------------------------------------------------ATTAAAAATG-GATAATAATG-ATA-------ATAATTAATAGTTAAG---------------------------------------------------------------------------AAAATC---GACGGAAACGAACCCTCTGAGCGATTTCCAGTAGACCTTCATAGGTGGCATGACCCGTCTGCTTAACCATGTCCTGGAACASizeHit CountTotal NormTotal
No Reads
droTak1
TAAACTCGACGGAGAGCCGGTAGTGCTCAATGAGGAGCCACAGCTTTAAAGCA----AGTTCAA---------GTTTTATTTTGATAAAGGGTCAAGA---------------------------------------------------------------------------------------------------------------------AT---------------------------------------------------------------------------------CATGATAAGC-TTG----------------------------------------------------------------------------GATGTATCTTTTGA--GGC----------------------AGA-----------AATTA-----CTTACTTATAATTGGACTATATGCAAAAATCGTATTTACATTTGATTTTATATAATTGTCTTAAAAAAA-----TG-------TGTCTTGAAT---------TCG-------AA---------------------------TGATAAATATTTTTAAATGAATTTGAAAATATATAATTTT--------------------ATCTTCACTCATTAAAGAATCA----------AGTGAAGACATT-----------TTTTTTTAATGCCAATTATTTSizeHit CountTotal NormTotal
No Reads
droEle1
AAAT-AA----------------------------------------------------------------------------AATGTACATTAGTTAAACTAGATATACCCAG------------------------------------------------------------------------------------------------------------------------------------CTA-AAGTTTCGGCTT---------------------------------------------------------------------AGTTCACAGGACATAGTTTACATAATAGCTGAGTCTCATGAGGAAAGACTGCGATTCTGGGCGCTTTCAAA--TGCCTAAA---------------------------------------------------------------------------------------------------------ATTACATTTT-C------ATA-AATTAAATAAAGTAT---------AA---------------------------------------------------------------AGTATTGATTTCAAATCA---AGGAAAAACTAACCTTTTGTGCGATTTTCAGCAGGCCCTCGTAGGTTGCATGACCCGTCTGCTTGACCATGCCGTGGAACASizeHit CountTotal NormTotal
No Reads
droRho1
CATAAAAGAAGAAAAG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAATATAGTTATCAATAAATAACAAAAACAATAACAATT-------------------TAAAATATTTATGTTACATATT--------------------------------------------------------TGC---------------AATTCATGAAGGAATATTCCGATCCGGGGAGCTTTGGAA--GGCCTGAA---------------------------------------------------------------------------------------------------------ATTAAAATTT-T------GTT-AGTGGCCGAAGCAAATGT---GTTAC---------------------------------------------------------------------------AATTCA---AATAAAAGCAGACCTTTTGTGCGACTTTCAGCAGATCCTCGTAGGTGGCATGTCCCGTCTGCTTGACCATGCCGTGGAACASizeHit CountTotal NormTotal
No Reads
droFic1
T-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTAAGTAACAGCTGAGTCTCATGAGGAAAGACTGCGATTCTGGGCGGTTTCAAA--TGCCTGAA---------------------------------------------------------------------------------------------------------ACCAAAAATA-G------AGA-AAA--------------AGA-------AACGAGTAAATA-------TCTTTCATCCATTAAATC-------------------------------------AGTCAA---AATAAGAACCCACCTTTTGTGCGACTTTAAGCAGACCCTCGTAGGTGGCATGACCCGTCTGCTTGACCATGCCGTGGAACASizeHit CountTotal NormTotal
No Reads
droKik1
GACC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTGGCTGTCCTCAAA--GGCCTGAA---------------------------------------------------------------------------------------------------------ATGAAGAGTCGT-------ATTTTCAGTTGGTGCGATCATTTACAGAT---------------------------------------------------------------------------TATTCA---AA---TGACCAACCTTTTGTGCGATTTTTAGCAATCCTTCGTAGGTGGCTTGGCCTGTCTGCTTCACCATGCCATGGAACASizeHit CountTotal NormTotal
No Reads
droAna3
T------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCAAA--TGTCTGAA--AATAAAATTC-----AAA---------------------------------------------------------------------------------------------------------A----------------------------GATGAGTAAAACTGGACGTTCCTTT-----------------------------------------------------GT---CCTTTTTTCTCACCTTCTTAGCAATCTTCAGCAGACCGTCGTAAGTAGCCTGCCCCGTCTGCTTCACCATTTCATGGAACASizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
No Reads
droBip1
CTTC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGAGTTTCCAGATGAGCCTGAA---------------------------------------------------------------------------------------------------------ATGAA-----GA-------GGATTTGGTT---------TTT-------AA---------------------------CGAAAAATCTTCGAA-------------------------------AATCTA---ACAAGAAACATACCTTTTCTGCTACTTTGAGAAGTCCATCGAAGCTGCTCTGGCCCGTCTCCATCACCATGCCATGGAAGASizeHit CountTotal NormTotal
No Reads
dp5
T----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGGCGTCTTCAAA--GGCCTGAACAAATAAATGTT-----GAAT----------------------------------------------------------------------------------------------GT-------AAATTCAGTT---------ATTT-------AAAGAGTAA------------------------------------------------------------------ATAT----AACATGGGCTTACCTTTTGTGCGACCTTCAGTAGGCCATCGTATGTGGCCTGACCCGTCTGCTTGACCATGCCGTGGAACASizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
No Reads
droPer2
T----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGGCGTCTTCAAA--GGCCTGAACAAATAAATGTT-----GAAT----------------------------------------------------------------------------------------------GT-------AAATTCAGTT---------ATTT-------ACCGAGTAA------------------------------------------------------------------ATAT----AACATGGGCTTACCTTTTGTGCGACCTTCAGTAGGCCATCGTATGTGGCCTGACCCGTCTGCTTGACCATGCCGTGGAACASizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
No Reads
droWil2
TAAACTGGATGGCGAACCAGTTGTTCTCAATGAGGAGCCACAATTATAGAGA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAATTTTAAA--TATATATC--ATGAATA---AATATATAAATATAAATATAT--------------------------------------------------------------------------------------------A----------------------------GATGAATAAA------------------------------------------------------------------TAT----A---------------------------------------TTATTTGGACATACATATATGTATGTATATACTAT--ATGTSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
No Reads
droVir3
TTGATTTTAGGCAGTTT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TT--------------------------------------------------------AGC---------------------------------------TTCTGTGATTCCAAATGGGCCTGTA--AATGGATGAT-----GGG-----------AATTA------------------------------------------------------------------------------------------------------------CTTAC------------------------------ATATATGCATGT---T--GAT----------------------------ATTTTGGGAATTGGTTATTTACCTTCTCCGCAACTTTTAACAGATTTTCGAAGGTGCTCTGCCCCGTCTCCATGACCATACTGTGAAAGASizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
No Reads
droMoj3
T------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCGAA--TGCCTAAA--AATAAATTTT-----TAA-----------AAATATTTTA-----------------------------------------------------------------------------------AATTTCATT---------------TTGATAA---------------------------CACTAAATTTGCAGA----G--------------------------ACTTT----AAAATAAA-CTACCTTCTTGGCAACTTGGAACAGATTGTCGTAAGTTGCTTTGCCCGTCTGCTTGACCATGTCGTTGAACASizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
No Reads
droGri2
TGAG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAGATTCAAA--TGCCTGTA--AATAAAA---AGAATATATATATATATATATATATTTGT-----------------------------------------------------------------------------------AATTGAA--T---------TTT---------------------------------------------------AACCAATTG----------------------AGAAAT---GCATTAATTTTACCTGCTTGGCAACCAACTGCAGATTTTCATAGGTTGATTTGCCCGTCTGCTTGACCATATCATGGAAAASizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads

Generated: 05/18/2015 at 10:04 AM