ID:

dsi_1283

 Coordinate:

3r:1053814-1054037 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-9.8 -9.7 -9.6

Flybase annnotation

intergenic

Repeatable elements

NameClassFamilyStrand
AT_richLow_complexityLow_complexity+

Sense Strand Reads

ATCAGCCGAAACGAAAACGAAACACAAATAACAGAACGCGCGCGCTCAAAGTCAGTGCTTGATACTAAGATATACCACAGATATACTACATACATATGTATGTGGAGCATCGGCGATAAATATTGTAAAATTATTTTTAAAAATATGTTCGACTCGTGTGCGACTGTTTGTGCGACGCCGACCAATGCAGTCCGTTAATTATTTTTCTGCACTCATTTCATTTGGCGATTGTCCGTTGCAATTCGGCCATTGGTATTGGTGTCCGTTTCCCTGGCGAAAGAAATATATTAAGTTGTTTAATTTAACATCCGTGCTCGGGAATTC
*******************************************************************************************************...((((((((((...(((((.(((((....)))))..)))))..)))..))).))))....*************************************************************************************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total M025
embryo
 M053
female body
 M024
male body		 SRR553486
Makindu_3 day-old ovaries
 SRR553487
NRT_0-2 hours eggs
 SRR902009
testis
 M023
head
 SRR902008
ovaries
.......................................................................................................GGAGCATCGGCGATAAATATTGT...................................................................................................................................................................................................... 23 0 1 3.00 3 3 0 0 0 0 0 0 0
................................................................................................................................................ATGTTCGACTCGTGTGCGACT............................................................................................................................................................... 21 0 1 2.00 2 2 0 0 0 0 0 0 0
...........................................................................................................................................................GAGTGCGACTGTTTGTGCGACGCC................................................................................................................................................. 24 1 1 2.00 2 0 0 0 2 0 0 0 0
..................................................................................................................................................................................................................ACTCATTTCATTTGGCGATTGTC........................................................................................... 23 0 1 2.00 2 2 0 0 0 0 0 0 0
...................................................................................................ATGTGGAGCATCGGCGATAAATATT........................................................................................................................................................................................................ 25 0 1 1.00 1 0 0 0 0 0 1 0 0
...................................................................................................................................................TTCGACTCGTGTGCGACT............................................................................................................................................................... 18 0 1 1.00 1 0 0 1 0 0 0 0 0
...................................................................................................ATGTGGAGCATCGGCGATA.............................................................................................................................................................................................................. 19 0 1 1.00 1 1 0 0 0 0 0 0 0
..........................................................................................................................................AAAAATATGTTCGACTCGTGTGC................................................................................................................................................................... 23 0 1 1.00 1 0 0 1 0 0 0 0 0
...............AACGAAACACAAATAACAGAAC............................................................................................................................................................................................................................................................................................... 22 0 1 1.00 1 0 1 0 0 0 0 0 0
...........................................................................................................................................................................................................................................................................................................ATTTAACATCCGTGCTCG....... 18 0 1 1.00 1 1 0 0 0 0 0 0 0
.....................................................................ATATACCACAGATATACTACAT......................................................................................................................................................................................................................................... 22 0 1 1.00 1 0 1 0 0 0 0 0 0
..........................................................................................................................................................................................................................................GTTGCAATTCGGCCATTG........................................................................ 18 0 1 1.00 1 0 0 1 0 0 0 0 0
.........................................................................................................................................TAAAAATATGTTCGACTCGTGTGCGACG............................................................................................................................................................... 28 1 1 1.00 1 1 0 0 0 0 0 0 0
..............................................................................................................................................................................................TCCGTTAATTATTTTTCTGCACT............................................................................................................... 23 0 1 1.00 1 0 0 0 0 1 0 0 0
...........................................................................................................................................................................................................TTTCTGCACTCATTTCATTTGGC.................................................................................................. 23 0 1 1.00 1 1 0 0 0 0 0 0 0
..........................................................................................................................................AAAAATATGTTCGACTCGTGTGCGACT............................................................................................................................................................... 27 0 1 1.00 1 0 0 1 0 0 0 0 0
....................AACACAAATAACAGAACG.............................................................................................................................................................................................................................................................................................. 18 0 1 1.00 1 0 0 0 0 0 0 1 0
...............................................................................................................................................................GCGACTGTTTGTGCGACGCC................................................................................................................................................. 20 0 1 1.00 1 0 0 0 0 0 0 0 1
...........................................................................................ACATATGTATGTGGAGCATCGGCGATAAA............................................................................................................................................................................................................ 29 0 1 1.00 1 0 1 0 0 0 0 0 0
..................................................................................................................................................GTTCGACTCGTGTGCGACT............................................................................................................................................................... 19 0 1 1.00 1 1 0 0 0 0 0 0 0
..............................................................................................................................................ATATGTTCGACTCGTGTGC................................................................................................................................................................... 19 0 1 1.00 1 1 0 0 0 0 0 0 0
.............................................................................................................................................................................................................TCTGCACTCATTTCATTTGGC.................................................................................................. 21 0 1 1.00 1 1 0 0 0 0 0 0 0
.......................................................................................................GGAGCATCGGCGATAAATATTGTA..................................................................................................................................................................................................... 24 0 1 1.00 1 1 0 0 0 0 0 0 0
...........................................................................................................................................................GTGTGCGACTGTTTGTGC....................................................................................................................................................... 18 0 1 1.00 1 1 0 0 0 0 0 0 0
.....................................................................................................................................................................................................................................TGTCCGTTGCAATTCGGCCATTG........................................................................ 23 0 1 1.00 1 0 1 0 0 0 0 0 0
............................................................................................CATATGTATGTGGAGCATCGGCGATAA............................................................................................................................................................................................................. 27 0 1 1.00 1 0 1 0 0 0 0 0 0
.................................................................................................GTATGTCGAGGATCGGCG................................................................................................................................................................................................................. 18 2 2 0.50 1 0 0 0 1 0 0 0 0
....................................................................................................................................................................................................................................................................................................TTGTTTAATTTATCATCAGT............ 20 2 3 0.33 1 0 0 0 0 1 0 0 0
........................................................................................................................................................................................................AGTTTTCTGCATTCATTTCA........................................................................................................ 20 2 7 0.14 1 0 0 0 0 0 1 0 0
.........................................................CTTGATACTGAGTTAGACC........................................................................................................................................................................................................................................................ 19 3 13 0.08 1 0 0 1 0 0 0 0 0

Anti-sense strand reads

TAGTCGGCTTTGCTTTTGCTTTGTGTTTATTGTCTTGCGCGCGCGAGTTTCAGTCACGAACTATGATTCTATATGGTGTCTATATGATGTATGTATACATACACCTCGTAGCCGCTATTTATAACATTTTAATAAAAATTTTTATACAAGCTGAGCACACGCTGACAAACACGCTGCGGCTGGTTACGTCAGGCAATTAATAAAAAGACGTGAGTAAAGTAAACCGCTAACAGGCAACGTTAAGCCGGTAACCATAACCACAGGCAAAGGGACCGCTTTCTTTATATAATTCAACAAATTAAATTGTAGGCACGAGCCCTTAAG
***************************************************************************************************************************************************************...((((((((((...(((((.(((((....)))))..)))))..)))..))).))))....******************************************************************************************************* 		Read size # Mismatch Hit Count Total Norm Total M024
male body		 M025
embryo
 SRR553488
RT_0-2 hours eggs
 SRR553486
Makindu_3 day-old ovaries
 SRR553487
NRT_0-2 hours eggs
 SRR618934
dsim w501 ovaries
 SRR902008
ovaries
 GSM343915
embryo
 SRR553485
Chicharo_3 day-old ovaries
...........................................................................................................................................................................................................................................................CCATAATCGCAGGCAAAG....................................................... 18 2 2 1.50 3 0 3 0 0 0 0 0 0 0
.............................................................................................................................................................................................................................................................................................................AATTGAAGGCACAAGCCCT.... 19 2 1 1.00 1 0 0 0 0 1 0 0 0 0
...................................................................................................................................................................................CTGGTTACGTCAGGCAATTAA............................................................................................................................ 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0
..............................................................................................................................................................ACGCTGACAAACACGCTG.................................................................................................................................................... 18 0 1 1.00 1 0 0 0 0 0 1 0 0 0
........................................................................ATGGTGTCTATATGATGTATG....................................................................................................................................................................................................................................... 21 0 1 1.00 1 0 0 0 1 0 0 0 0 0
.........................................................................................................................................................................................................................................................AACCATAACCACAGGCAAAGG...................................................... 21 0 1 1.00 1 0 0 0 0 0 0 1 0 0
.....................................................................................................................................................................................GGTTACGTCAGGCAATTAATAAAA....................................................................................................................... 24 0 1 1.00 1 1 0 0 0 0 0 0 0 0
............................................................................................................TAGCCGCTATTTAGAA........................................................................................................................................................................................................ 16 1 3 0.67 2 0 0 2 0 0 0 0 0 0
.............................TGGTCGTGCGCGCGCGAG..................................................................................................................................................................................................................................................................................... 18 2 5 0.20 1 0 0 0 0 0 0 0 1 0
.............................................................................................................AGCCGCTATTTAGAA........................................................................................................................................................................................................ 15 1 6 0.17 1 0 0 1 0 0 0 0 0 0
...........................................................................................................ATAGCCGCTATTTAT.......................................................................................................................................................................................................... 15 1 7 0.14 1 0 0 1 0 0 0 0 0 0
............................................................................................................AAGCCGCTATTTATAA........................................................................................................................................................................................................ 16 1 8 0.13 1 0 0 1 0 0 0 0 0 0
...................................................................................................................................ATAAAAATTTGGATACAGGCT............................................................................................................................................................................ 21 3 19 0.05 1 0 0 1 0 0 0 0 0 0
............................................................................................................................................................................................................AAGACTTGAGTAAAG......................................................................................................... 15 1 20 0.05 1 0 0 0 0 0 0 0 0 1

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim2 3r:1053764-1054087 - dsi_1283 AT----CAGCCG---------------------------------------------AAACGAAAACGAAACACAAATAACAGAA------------------------------------------------------------------------CGCGCGCGCTCA--AAGTCAGTGCTTGATACTAAGATATACCACAGATATACTACATACATAT-----GTATGTGGAGCATCGGCGATAAATATTGTAA-AATTATTTTTAAAAATATGTTCGACTCGTGTGCGACTGTTTGTGCG-----A---CGCCGACCAATGCAGTCCGTT------AATTATTTTTCTGCACTCATTTC--ATTT---GGCGATTGTCCGTTGCAATTCGGCCA-----------------TTG-GTATTGGTGTCCGTTTCCCTGGCGAAAGAAATATATTAAGTTGTTTAATT-----------TAACA---------------------------------------------TCCGTGCTCGGGAATTC
droSec2 scaffold_6:1272341-1272664 - AT----CAGCCG---------------------------------------------AAACGAAAACGAAACACAAATAACAGAA------------------------------------------------------------------------CGCGCGCGCTCA--AAGTCAGTGCTTGATACTAAGATATACCACAGATATACTACATACATAT-----GTATGTGGAGCATCGGCGATAAATATTGTAA-AATTATTTTTAAAAATATGTTCGACTCGTGTGCGACTGTTTGTGCG-----A---CGCCGACCAATGCAGTCCGTT------AATTATTTTTCTGCACTCATTTC--ATTT---GGCGATTGTCCGTTGCAATTCGGCCA-----------------TTG-GTATTGGTGTCCGTTTCCCTGGCGAAAGAAATATATTAAGTTGTTTAATT-----------TAACA---------------------------------------------TCCGTGCTCGGGAATTC
dm3 chr3R:1149193-1149510 - AT----CAGCCG---------------------------------------------AAACGAAAACGGAACACAAATAACAGAA------------------------------------------------------------------------CGCGCGCGCTCA--AAGTCAGTGCTTGATACTAAGATATAGCACAGATATACTACATACATAT-----GTATGTGGAGCATCGGCGATAAATATTGTAA-AATTATTTTTAAAAATATGTTCGACTCGTGTGCGACTGTTTGTGCG-----A---CGCCGACCAACGCAGTCCGCA------AATTATTTTTCTGCACTCATTTC--ATTT---GGCGATTGTCCGTTGCAATTCGGCCA------------------------TTGGTGTCCGTTTTCCTGGCGAAAGAAATATATTAAGTTGTTTAATT-----------TAACA---------------------------------------------TCCGTGCTCGGGAATTC
droEre2 scaffold_4770:1423703-1423935 - ---------------------------------------------------------------------------------------------------------------------------------------------------------------CGCGCGCTCG--AAGTCAGTGCTTGATACAAAGATATACCT----TATACTACA-------------TATGTGGAGCATCGGCGATAAATATTGTAA-AATTATTTTTAAAAATATGTTCGACTCGTGTGCGACTGTTTGTGCG-----A---CGCCGACCAATGCAGTCCGCT------AATTATTTTTCTGCACTCATTC----------TGCGATTGTCCATTGCAATTCGGC-----------------------------------------CTGACGAAAGAATTATATTAAGTTGTTTAAAT-----------TAACA---------------------------------------------TCCG-------------
droYak3 3R:1531113-1531358 - ---------------------------------------------------------------------------------------------------------------------------------------------------------------CGCGCGCTCA--AAGTCAGTGCTTGATAATAAGATATACCA----TATACTACA----TAT-----GTATGTGGAGCATCGGCGATAAATATTGTAA-AATAATTTTTAAAAATATGTTCGACTCGTGTGC------------G-----A---CGACGAACAATGTAGTACGCT------AATTATTTTTCTGCACTCATTT----------CGCGATTGTCTGTTGCAATTCGGCTA------------------------TTGGTGTCCGTTTTTCTGGCAAAAGAAATATATTAAGTTGTTTAAAT-----------TACCA---------------------------------------------TCCGTACT---------
droEug1 scf7180000409766:60552-60883 - AT----CAGCTGA-----------AGTA-----AAGACCCAA-CGAGATTCCGCGCCAACCGAAAACGAAACACAAATATCA---------------------------------------------------------------------AAAACGCGCGCGCGCTCA-AAAGTCTGTGCTTAATAATAAGATAT-------------------------------ATGTGGAGCACCGACGATAAATATTGTAAAAATTATTTTTAAAAATATGATCGAGTTGTGTGCGACTGTTTGTGCG-----A---CGCCGACGATTGCAGTCCGCT------AATTATTTTTCTGCACTCATTT----------TCCGATTGTCTGCTGCATTTCAGAAA------------------------CCAGCGTCCGTTGTTCTGGCAAAGGCAATAAATTGAGTTGTTAAAATTCTCTGAAAATTACCAT--------------------------------------------TCCGTGCTTGTGAATTC
droBia1 scf7180000302411:900934-901190 - GT------------------------------------------------CCGCGCCAAACGAAAACGAAACACAAATAA------------------------------------------------------------------------ATTCGCGCGCGCGCTCA--GAGCCTGTGCTCAACAATAAGATATAC---------------------------ACATGTGGAGCATCGACGATAAA-ATTGTAAAAATTATTTTTAA-AATATG----AGTTGTGTG-----------------------TGCCGAAAATTGCAGTCTGAA------AATTACTTCTCTGCACTCATTT----------TCCCATTTTCCGTTGCGTCTCGGCCA------------------------TCAGCGTCCGTTGTTCA-GCTGCAGAAATAACTTGAGTTGCTTG----------------------------------------------------------------------TTAAAGAATTC
droTak1 scf7180000415789:233416-233731 + AT----CAGCTGA-----------A-TA-----AAAACACAAGTGAGAGTCCGCGCCAAACGAAAACGAAACAA-AATAA-A---------------------------------------------------------------------GTAACGCGCGCGCGCTCA-AAAGCCTGTGCTTAATAATAAGATATACC---------------------------CATGTGGAGCATCAACGATA-ATATTGTAAAAATTATTTTTAA-AATATGATTAAGTTGTGCGCGACTG----TGCG-----A---GGCCGAAAATTGCAGTCTGAT------AATTATTTTTCTGCACTCATTT----------TCCAATTGTCCGTTGCATTTCGGCCA------------------------TTAGCGTCCGTTGCTCTGGCAGTAGTAATAAATTGAATTGTTTAAAATCTCACAAAA------G--------------------------------------------TC------CATAAATTC
droEle1 scf7180000491021:329137-329443 + AT----CAGCTGA-----------AGTAAATTGAAAACACA-CTGAGAGTCCGCGCCAAACGAAAACGAAATACAAATAACA---------------------------------------------------------------------AAAACGCGCGCGCGCTCAATAAGTCAGTGCTTAATAATAAGATATAC---------------------------ATATGTGGAGCACCGGCGACGAATAATGTAAAAATTATATTTAAAAATATTATCGAGTTGTGTGCGGCC---TGAGTG-----A---TGCTGACTTATGCAGTCTGTG------GATTATTTTTTTGCGCTTGTTT----------TCCGAATGTCCGTTGCATTTCAGCCA------------------------TTAGCGTCCGTTGTTCTGGCAACAGTAATAAATTGAGTTGTTAAA----------------------------------------------------------------------------ATTC
droRho1 scf7180000767287:194-490 - AT----CAGCTGA-----------AGTA-----GAAACACAACTGAGAGTCTGCGCCAAACGAAAACGAAACACAAATAACA---------------------------------------------------------------------AAATCGCGCGCGCGCTCAAAAAGTCTGTGCTTGATAATAAGATAT-------------------------------ATGTGGAGCATCGGCGATGAATACTGTAAAAATTATTTTTAAAAATATGATCGAGTTTTGTGCGACTG----AGTG-----A---TGCTGACAATTGCAGTCTCTT------GATTACTTTTCTGCGCTCGTTT----------TCCGATTGTCCGTTGCATTTCAGCCA------------------------TTAGCGTCCGTTGTTCTGGCTACAGTAATAAATTGAGTTGTTAAAAT-----------T------------------------------------------------------------------
droFic1 scf7180000453850:531837-532165 - AT----CAACTG---------------------------------AGAGTCCGCGCCAAACGAAACCGAAACACAAATA-CA----------------------------------------------------------------------AAACGCGCGCGCGCTCA-AAAGTCAGTGCTTAATAATAAGATAT-------------------------------ATGTGGAGCA-CAGCGATAAATATTGTAAAAATTATTTTTAAAATTATGATCGAGTTG-GTGCGACTGTGTGCG----GCGA---TGCTGACAATTGCAGTCCGCTGATGCTGATTACTTTCCTGCGCCCATTTCCCATTTTCTTCCGATTGTCCGTTGCATTTCAGCCA------------------------TTAGCGTCCGTTGCTCTGGCCGCAGTAATAAATTGAGTTGTTAAGAGTGTCACACAGTTAAAAT--------------------------------------------TCCGTTTTCGAAAATTC
droKik1 scf7180000302461:568382-568770 - GT------------------------------------------------CCGCGCCAAACGAAATCGAAACAGATT------------------------CTCTTTTGCTGCAATAAATTAACGGAGAAATAAAAAACAAA---TA-AGAAAGACGCGCGCGCGCTTAAAAAGTCTGTGCCAAATATCGAGATAA-------------------------------ATGTGCAGCAACGGCGGGAAATATTGTAAAAATTATTTTTAATAATATGATCGAGTTTTGTGTGGCTGTTTATGTG-----T---GTGCGAGATGTGCAGTCTGTTGAT---TATTATTTCTCTGTGCCCAATT-----------CAGATTGT----------TCAGTCATTAAAGTCCGTTAAATA-------A-------TGGCAGTCCGTTTGCAGCAATTAAC----CCATTAAAATTCCCACATAATTAACAGACATTTTTCCAGTAATATTTATTAATTTTATGCACATTTCCCTAGCTGTCTGTGAGAGTCT
droAna3 scaffold_13340:23330373-23330650 - AA----------------------------------------------TCCCGCGCCAAACGAATACGAAACAAAAATCATAAA-----------------T------------ACAAATT-----AAAAAT--AAAACAAA---AATTAAAAATCGCGCGCGCGCTTCAAAAGTCTGTGCTAAATAATGAGATAA-------------------------------ATGTGCAGCCGCAGCGAGAAATATTGTAAAGATTATTTTTAAAAATATGATCGGGTTTTGTTGGGCCATGTGTGCGTGGTGG---CTCTGACAATTGCAGTCTGTT------GATTATTTTTCTGCGCTCATTT----------TTAGGCCGTCTGTTGCATTTCAGTT--------------------GCACATTAATGTCTGCT-----------------------------------------------------------------------------------------------------------------
droBip1 scf7180000396395:332939-333221 - AA----------------------------------------------TCCCGCGCCAAACGAAAACGAAACACAAATT----------------------T------------ATAAATC-----AAAAAT--AAAACAAA---AA-TAAAAATCGCGCGCGCGCTTCAAAAGTCTGTGCTAAATAATGAGATAA-------------------------------ATGTGCAGCCGCAGCGAGAAATATTGTAAAGATTATTTTTAAAAATATGATCGGGTTTTGTTGGGCCATGTGTGCGTGGTGGTGGCTCTGACAATTGCAGTCTGTT------GATTATTTTTCTGTGCTCATTT----------TTAGGCCGTCTGTTGCATTTCAGTT--------------------GCACATTAATGTCTGCTGGTCCGGC---------------------------------------------------------------------------------------------------------
dp5 2:21632962-21632995 + GT----C--------------------------------------------GGCGCCAAACGAAATCGAAAGAGTAA---CCGAA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droPer2 scaffold_3:4417875-4417896 + AG----CAACAA---------------------------------------------AACCCCAATTGAGA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droVir3 scaffold_12855:7758359-7758380 + GC--------------------------------------------------GCGCCA-----AAACGAAACAGAAA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droMoj3 scaffold_6540:22979170-22979324 + AAGTGTCAGCAAACTCTTAATTTTTACA-----GA-------------GCCC-AATCAAGCG------------------AAAAACGCGCGCGCACAATTTT------------AGAAATA-----AAAAA---------AAATATT-AAAAAAACACACACACACACAACAAACC-----------------------------------------AATTTACCGTAAGCGGGATTAC-GTGCTAAATAAAGTAA-AACTA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droGri2 scaffold_15074:4309045-4309067 + AG----CG--------------------------------------------------CGCGAAAGCGAAACAGAAA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
AT----CAGCCG---------------------------------------------AAACGAAAACGAAACACAAATAACAGAA------------------------------------------------------------------------CGCGCGCGCTCA--AAGTCAGTGCTTGATACTAAGATATACCACAGATATACTACATACATAT-----GTATGTGGAGCATCGGCGATAAATATTGTAA-AATTATTTTTAAAAATATGTTCGACTCGTGTGCGACTGTTTGTGCG-----A---CGCCGACCAATGCAGTCCGTT------AATTATTTTTCTGCACTCATTTC--ATTT---GGCGATTGTCCGTTGCAATTCGGCCA-----------------TTG-GTATTGGTGTCCGTTTCCCTGGCGAAAGAAATATATTAAGTTGTTTAATT-----------TAACA---------------------------------------------TCCGTGCTCGGGAATTCSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
.......................................................................................................................................................................................................................................GGAGCATCGGCGATAAATATTGT....................................................................................................................................................................................................................................................................................................2313.00300300000000000000
.................................................................................................................................................................................................................................................................................ATGTTCGACTCGTGTGCGACT............................................................................................................................................................................................................................................................2112.00200200000000000000
.................................................................................................................................................................................................................................................................................................................................................................ACTCATTTC--ATTT---GGCGATTGTC.....................................................................................................................................................................2312.00200200000000000000
...................................................................................................................................................................................................................................ATGTGGAGCATCGGCGATAAATATT......................................................................................................................................................................................................................................................................................................2511.00100000000000001000
....................................................................................................................................................................................................................................................................................TTCGACTCGTGTGCGACT............................................................................................................................................................................................................................................................1811.00101000000000000000
...................................................................................................................................................................................................................................ATGTGGAGCATCGGCGATA............................................................................................................................................................................................................................................................................................................1911.00100100000000000000
...........................................................................................................................................................................................................................................................................AAAAATATGTTCGACTCGTGTGC................................................................................................................................................................................................................................................................2311.00101000000000000000
................................................................AACGAAACACAAATAACAGAA------------------------------------------------------------------------C....................................................................................................................................................................................................................................................................................................................................................................................................2211.00100010000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATT-----------TAACA---------------------------------------------TCCGTGCTCG.......1811.00100100000000000000
................................................................................................................................................................................................ATATACCACAGATATACTACAT............................................................................................................................................................................................................................................................................................................................................2211.00100010000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................GTTGCAATTCGGCCA-----------------TTG-................................................................................................................................1811.00101000000000000000
..........................................................................................................................................................................................................................................................................TAAAAATATGTTCGACTCGTGTGCGACG............................................................................................................................................................................................................................................................2811.00100100000000000000
.......................................................................................................................................................................................................................................................................................................................................TCCGTT------AATTATTTTTCTGCACT..............................................................................................................................................................................................2311.00100000000100000000
..........................................................................................................................................................................................................................................................................................................................................................TTTCTGCACTCATTTC--ATTT---GGC............................................................................................................................................................................2311.00100100000000000000
...........................................................................................................................................................................................................................................................................AAAAATATGTTCGACTCGTGTGCGACT............................................................................................................................................................................................................................................................2711.00101000000000000000
.....................................................................AACACAAATAACAGAA------------------------------------------------------------------------CG...................................................................................................................................................................................................................................................................................................................................................................................................1811.00110000000000000000
................................................................................................................................................................................................................................................................................................GCGACTGTTTGTGCG-----A---CGCC......................................................................................................................................................................................................................................2011.00100000000000010000
......................................................................................................................................................................................................................ACATAT-----GTATGTGGAGCATCGGCGATAAA..........................................................................................................................................................................................................................................................................................................2911.00100010000000000000
...................................................................................................................................................................................................................................................................................GTTCGACTCGTGTGCGACT............................................................................................................................................................................................................................................................1911.00100100000000000000
...............................................................................................................................................................................................................................................................................ATATGTTCGACTCGTGTGC................................................................................................................................................................................................................................................................1911.00100100000000000000
............................................................................................................................................................................................................................................................................................................................................................TCTGCACTCATTTC--ATTT---GGC............................................................................................................................................................................2111.00100100000000000000
.......................................................................................................................................................................................................................................GGAGCATCGGCGATAAATATTGTA...................................................................................................................................................................................................................................................................................................2411.00100100000000000000
............................................................................................................................................................................................................................................................................................GTGTGCGACTGTTTGTGC....................................................................................................................................................................................................................................................1811.00100100000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................TGTCCGTTGCAATTCGGCCA-----------------TTG-................................................................................................................................2311.00100010000000000000
.......................................................................................................................................................................................................................CATAT-----GTATGTGGAGCATCGGCGATAA...........................................................................................................................................................................................................................................................................................................2711.00100010000000000000
droSec2
AT----CAGCCG---------------------------------------------AAACGAAAACGAAACACAAATAACAGAA------------------------------------------------------------------------CGCGCGCGCTCA--AAGTCAGTGCTTGATACTAAGATATACCACAGATATACTACATACATAT-----GTATGTGGAGCATCGGCGATAAATATTGTAA-AATTATTTTTAAAAATATGTTCGACTCGTGTGCGACTGTTTGTGCG-----A---CGCCGACCAATGCAGTCCGTT------AATTATTTTTCTGCACTCATTTC--ATTT---GGCGATTGTCCGTTGCAATTCGGCCA-----------------TTG-GTATTGGTGTCCGTTTCCCTGGCGAAAGAAATATATTAAGTTGTTTAATT-----------TAACA---------------------------------------------TCCGTGCTCGGGAATTCSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
............................................................................ATAACAGAA------------------------------------------------------------------------CGCGCGCGCTCA--AAAAT..................................................................................................................................................................................................................................................................................................................................................................................2611.0010010
.......................................................................CACAAATAACAGAA------------------------------------------------------------------------CGCGCGCG.............................................................................................................................................................................................................................................................................................................................................................................................2211.0010010
............................................................................................................................................................................................................................................................................................................................................................................ATTT---GGCGATTGTCCGTTGCA..............................................................................................................................................................2111.0010010
.......................................................................CACAAATAACAGAA------------------------------------------------------------------------CGCGC................................................................................................................................................................................................................................................................................................................................................................................................1911.0010010
.....................................................................................................................................................................................................................................................................................................TGTTTGTGCG-----A---CGCCGACC..................................................................................................................................................................................................................................1911.0010010
...........................................................................................................................................................................................................................................................................AAAAATATGTTCGACTCGT....................................................................................................................................................................................................................................................................1911.0010010
dm3
AT----CAGCCG---------------------------------------------AAACGAAAACGGAACACAAATAACAGAA------------------------------------------------------------------------CGCGCGCGCTCA--AAGTCAGTGCTTGATACTAAGATATAGCACAGATATACTACATACATAT-----GTATGTGGAGCATCGGCGATAAATATTGTAA-AATTATTTTTAAAAATATGTTCGACTCGTGTGCGACTGTTTGTGCG-----A---CGCCGACCAACGCAGTCCGCA------AATTATTTTTCTGCACTCATTTC--ATTT---GGCGATTGTCCGTTGCAATTCGGCCA------------------------TTGGTGTCCGTTTTCCTGGCGAAAGAAATATATTAAGTTGTTTAATT-----------TAACA---------------------------------------------TCCGTGCTCGGGAATTCSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
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.......................................................................................................................................................................................................................................................................................................................................................................................................................................GGTGTCCGTTTTCCTGGCGAAAGA...................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
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............................................................................................................................................................................................................................................................................................................................................................................................................A------------------------TTGGTGTCCGTTTTCCTGGCGAAAG....................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
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............................................................................................................................................................................................................................................................................................................................................................................................................A------------------------TTGGTGTCCGTTTTCCTGGCGAAAGAA..................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000
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............................................................................................................................................................................................................................................................................................................................................................................................................A------------------------TTGGTGTCCGTTTTCCTGGCGAA......................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
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................................................................................................................................................................................................................................................................................TATGTTCGACTCGTGTGCGACTG...........................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000
.......................................................................CACAAATAACAGAA------------------------------------------------------------------------CGCG.................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
...........G---------------------------------------------AAACGAAAACGGAACACAAATAACA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................ACGGAACACAAATAACAGAA------------------------------------------------------------------------CGCGCGC..............................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................AACAGAA------------------------------------------------------------------------CGCGCGCGCTCA--AAGTC..................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................TTCGACTCGTGTGCGACTGT..........................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................AT-----GTATGTGGAGCATCGG.................................................................................................................................................................................................................................................................................................................1820.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................ATACTACATACATAT-----GTATGT...........................................................................................................................................................................................................................................................................................................................2120.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................TTTTTCTGCACTCATTTC--CA....................................................................................................................................................................................2060.1710000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000
droEre2
---------------------------------------------------------------------------------------------------------------------------------------------------------------CGCGCGCTCG--AAGTCAGTGCTTGATACAAAGATATACCT----TATACTACA-------------TATGTGGAGCATCGGCGATAAATATTGTAA-AATTATTTTTAAAAATATGTTCGACTCGTGTGCGACTGTTTGTGCG-----A---CGCCGACCAATGCAGTCCGCT------AATTATTTTTCTGCACTCATTC----------TGCGATTGTCCATTGCAATTCGGC-----------------------------------------CTGACGAAAGAATTATATTAAGTTGTTTAAAT-----------TAACA---------------------------------------------TCCG-------------SizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
...............................................................................................................................................................................................................ACTACA-------------TATGTGGAGCATC...................................................................................................................................................................................................................................................................................................................1911.0010001000
......................................................................................................................................................................................................................................................................................................GTTTGTGCG-----A---CGCCGACCAAT...............................................................................................................................................................................................................................2111.0010000100
.............................................................................................................................................................................................................ATACTACA-------------TATGTGGAGCATCGGC................................................................................................................................................................................................................................................................................................................2411.0010000010
................................................................................................................................................................GCGCGCTCG--AAGTCAGTG..............................................................................................................................................................................................................................................................................................................................................................................1811.0010000010
...................................................................................................................................................................................................................................ATGTGGAGCATCGGCGATAAATATT......................................................................................................................................................................................................................................................................................................2511.0010000100
.............................................................................................................................................................................................................ATACTACA-------------TATGTGGAGCATCGGCGAT.............................................................................................................................................................................................................................................................................................................2711.0011000000
................................................................................................................................................................................................................................................................................TATGTTCGACTCGTGTGCG...............................................................................................................................................................................................................................................................1911.0010001000
....................................................................................................................................................................................................................A-------------TATGTGGAGCATCGGCGATAAATA........................................................................................................................................................................................................................................................................................................2511.0010000100
.......................................................................................................................................................................CG--AAGTCAGTGCTTGATAC......................................................................................................................................................................................................................................................................................................................................................................1911.0011000000
..............................................................................................................................................................................................................TACTACA-------------TATGTGGAGCATCGGC................................................................................................................................................................................................................................................................................................................2311.0010000010
.............................................................................................................................................................................................................ATACTACA-------------TATGTGGAGCATCGGCGATA............................................................................................................................................................................................................................................................................................................2811.0010000100
..........................................................................................................................................................................................................................................................................................................................................................................................GTCCATTGCAATTCGGC-----------------------------------------CTGACGAAA.....................................................................................................2611.0010000010
droYak3
---------------------------------------------------------------------------------------------------------------------------------------------------------------CGCGCGCTCA--AAGTCAGTGCTTGATAATAAGATATACCA----TATACTACA----TAT-----GTATGTGGAGCATCGGCGATAAATATTGTAA-AATAATTTTTAAAAATATGTTCGACTCGTGTGC------------G-----A---CGACGAACAATGTAGTACGCT------AATTATTTTTCTGCACTCATTT----------CGCGATTGTCTGTTGCAATTCGGCTA------------------------TTGGTGTCCGTTTTTCTGGCAAAAGAAATATATTAAGTTGTTTAAAT-----------TACCA---------------------------------------------TCCGTACT---------SizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
............................................................................................................................................................................................................................................................................................................................................................................................................A------------------------TTGGTGTCCGTTTTTCTGGCAAAAG....................................................................................................2629.5019000000000019
.....................................................................................................................................................................................................................................GTGGAGCATCGGCGATAAAT.........................................................................................................................................................................................................................................................................................................2021.00200000020000
...............................................................................................................................................................................................................ACTACA----TAT-----GTATGTGGAGCATCGGC................................................................................................................................................................................................................................................................................................................2620.50100000010000
..............................................................................................................................................................................................................................................................................................................................................................................................GTTGCAATTCGGCTA------------------------TTGGT........................................................................................................................2020.50100000010000
...................................................................................................................................................................................................................................ATGTGGAGCATCGGCGATAAATATTAAT...................................................................................................................................................................................................................................................................................................2820.50100000010000
....................................................................................................................................................................................................................................................................................................................................................................CATTT----------CGCGATTGTCTGTTGCAATTC..........................................................................................................................................................2620.50110000000000
.....................................................................................................................................................................................................................................GTGGAGCATCGGCGATAAATATTGT....................................................................................................................................................................................................................................................................................................2520.50100000010000
................................................................................................................................................................................................................CTACA----TAT-----GTATGTGGAGCATCGGCGAT.............................................................................................................................................................................................................................................................................................................2820.50100000010000
................................................................................................................................................................................................................................................................................TATGTTCGACTCGTGTGC------------G-----A---CGACG.....................................................................................................................................................................................................................................2520.50101000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................TA------------------------TTGGTGTCCGTTTTTCTGGCAAAAGA...................................................................................................2820.50100100000000
.....................................................................................................................................................................................................................................GTGGAGCATCGGCGATAAATA........................................................................................................................................................................................................................................................................................................2120.50101000000000
..............................................................................................................................................................................................................TACTACA----TAT-----GTATGTGGAGCATCGGC................................................................................................................................................................................................................................................................................................................2720.50100100000000
...................................................................................................................................................................................................................CA----TAT-----GTATGTGGAGCATC...................................................................................................................................................................................................................................................................................................................1920.50100000010000
..........................................................................................................................................................................................................................AT-----GTATGTGGAGCATCGGC................................................................................................................................................................................................................................................................................................................1920.50100000010000
.................................................................................................................................................................................................................TACA----TAT-----GTATGTGGAGCATCGGCGAT.............................................................................................................................................................................................................................................................................................................2720.50100000010000
......................................................................................................................................................................................................................................................................................CGACTCGTGTGC------------G-----A---CGACG.....................................................................................................................................................................................................................................1920.50100100000000
.....................................................................................................................................................................................................................................GTGGAGCATCGGCGATAAATATTAAT...................................................................................................................................................................................................................................................................................................2620.50100000010000
................................................................................................................................................................................................................CTACA----TAT-----GTATGTGGAGCATCGGCGATA............................................................................................................................................................................................................................................................................................................2920.50100000010000
...................................................................................................................................................................................................................................................................................................................................GTAGTACGCT------AATTATTTTTCTGCAC...............................................................................................................................................................................................2620.50100100000000
......................................................................................................................................................................................................................................................................................CGACTCGTGTGC------------G-----A---CGACGAACAAT...............................................................................................................................................................................................................................2520.50100100000000
....................................................................................................................................................................................................................A----TAT-----GTATGTGGAGCATCGGC................................................................................................................................................................................................................................................................................................................2120.50100000010000
..................................................................................................................................................................................................................................................................................................................................................................CTCATTT----------CGCGATTGTCTGTTGC...............................................................................................................................................................2320.50100000010000
droEug1
AT----CAGCTGA-----------AGTA-----AAGACCCAA-CGAGATTCCGCGCCAACCGAAAACGAAACACAAATATCA---------------------------------------------------------------------AAAACGCGCGCGCGCTCA-AAAGTCTGTGCTTAATAATAAGATAT-------------------------------ATGTGGAGCACCGACGATAAATATTGTAAAAATTATTTTTAAAAATATGATCGAGTTGTGTGCGACTGTTTGTGCG-----A---CGCCGACGATTGCAGTCCGCT------AATTATTTTTCTGCACTCATTT----------TCCGATTGTCTGCTGCATTTCAGAAA------------------------CCAGCGTCCGTTGTTCTGGCAAAGGCAATAAATTGAGTTGTTAAAATTCTCTGAAAATTACCAT--------------------------------------------TCCGTGCTTGTGAATTCSizeHit CountTotal NormTotal
No Reads
droBia1
GT------------------------------------------------CCGCGCCAAACGAAAACGAAACACAAATAA------------------------------------------------------------------------ATTCGCGCGCGCGCTCA--GAGCCTGTGCTCAACAATAAGATATAC---------------------------ACATGTGGAGCATCGACGATAAA-ATTGTAAAAATTATTTTTAA-AATATG----AGTTGTGTG-----------------------TGCCGAAAATTGCAGTCTGAA------AATTACTTCTCTGCACTCATTT----------TCCCATTTTCCGTTGCGTCTCGGCCA------------------------TCAGCGTCCGTTGTTCA-GCTGCAGAAATAACTTGAGTTGCTTG----------------------------------------------------------------------TTAAAGAATTCSizeHit CountTotal NormTotal
No Reads
droTak1
AT----CAGCTGA-----------A-TA-----AAAACACAAGTGAGAGTCCGCGCCAAACGAAAACGAAACAA-AATAA-A---------------------------------------------------------------------GTAACGCGCGCGCGCTCA-AAAGCCTGTGCTTAATAATAAGATATACC---------------------------CATGTGGAGCATCAACGATA-ATATTGTAAAAATTATTTTTAA-AATATGATTAAGTTGTGCGCGACTG----TGCG-----A---GGCCGAAAATTGCAGTCTGAT------AATTATTTTTCTGCACTCATTT----------TCCAATTGTCCGTTGCATTTCGGCCA------------------------TTAGCGTCCGTTGCTCTGGCAGTAGTAATAAATTGAATTGTTTAAAATCTCACAAAA------G--------------------------------------------TC------CATAAATTCSizeHit CountTotal NormTotal
No Reads
droEle1
AT----CAGCTGA-----------AGTAAATTGAAAACACA-CTGAGAGTCCGCGCCAAACGAAAACGAAATACAAATAACA---------------------------------------------------------------------AAAACGCGCGCGCGCTCAATAAGTCAGTGCTTAATAATAAGATATAC---------------------------ATATGTGGAGCACCGGCGACGAATAATGTAAAAATTATATTTAAAAATATTATCGAGTTGTGTGCGGCC---TGAGTG-----A---TGCTGACTTATGCAGTCTGTG------GATTATTTTTTTGCGCTTGTTT----------TCCGAATGTCCGTTGCATTTCAGCCA------------------------TTAGCGTCCGTTGTTCTGGCAACAGTAATAAATTGAGTTGTTAAA----------------------------------------------------------------------------ATTCSizeHit CountTotal NormTotal
No Reads
droRho1
AT----CAGCTGA-----------AGTA-----GAAACACAACTGAGAGTCTGCGCCAAACGAAAACGAAACACAAATAACA---------------------------------------------------------------------AAATCGCGCGCGCGCTCAAAAAGTCTGTGCTTGATAATAAGATAT-------------------------------ATGTGGAGCATCGGCGATGAATACTGTAAAAATTATTTTTAAAAATATGATCGAGTTTTGTGCGACTG----AGTG-----A---TGCTGACAATTGCAGTCTCTT------GATTACTTTTCTGCGCTCGTTT----------TCCGATTGTCCGTTGCATTTCAGCCA------------------------TTAGCGTCCGTTGTTCTGGCTACAGTAATAAATTGAGTTGTTAAAAT-----------T------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droFic1
AT----CAACTG---------------------------------AGAGTCCGCGCCAAACGAAACCGAAACACAAATA-CA----------------------------------------------------------------------AAACGCGCGCGCGCTCA-AAAGTCAGTGCTTAATAATAAGATAT-------------------------------ATGTGGAGCA-CAGCGATAAATATTGTAAAAATTATTTTTAAAATTATGATCGAGTTG-GTGCGACTGTGTGCG----GCGA---TGCTGACAATTGCAGTCCGCTGATGCTGATTACTTTCCTGCGCCCATTTCCCATTTTCTTCCGATTGTCCGTTGCATTTCAGCCA------------------------TTAGCGTCCGTTGCTCTGGCCGCAGTAATAAATTGAGTTGTTAAGAGTGTCACACAGTTAAAAT--------------------------------------------TCCGTTTTCGAAAATTCSizeHit CountTotal NormTotal
No Reads
droKik1
GT------------------------------------------------CCGCGCCAAACGAAATCGAAACAGATT------------------------CTCTTTTGCTGCAATAAATTAACGGAGAAATAAAAAACAAA---TA-AGAAAGACGCGCGCGCGCTTAAAAAGTCTGTGCCAAATATCGAGATAA-------------------------------ATGTGCAGCAACGGCGGGAAATATTGTAAAAATTATTTTTAATAATATGATCGAGTTTTGTGTGGCTGTTTATGTG-----T---GTGCGAGATGTGCAGTCTGTTGAT---TATTATTTCTCTGTGCCCAATT-----------CAGATTGT----------TCAGTCATTAAAGTCCGTTAAATA-------A-------TGGCAGTCCGTTTGCAGCAATTAAC----CCATTAAAATTCCCACATAATTAACAGACATTTTTCCAGTAATATTTATTAATTTTATGCACATTTCCCTAGCTGTCTGTGAGAGTCTSizeHit CountTotal NormTotal
No Reads
droAna3
AA----------------------------------------------TCCCGCGCCAAACGAATACGAAACAAAAATCATAAA-----------------T------------ACAAATT-----AAAAAT--AAAACAAA---AATTAAAAATCGCGCGCGCGCTTCAAAAGTCTGTGCTAAATAATGAGATAA-------------------------------ATGTGCAGCCGCAGCGAGAAATATTGTAAAGATTATTTTTAAAAATATGATCGGGTTTTGTTGGGCCATGTGTGCGTGGTGG---CTCTGACAATTGCAGTCTGTT------GATTATTTTTCTGCGCTCATTT----------TTAGGCCGTCTGTTGCATTTCAGTT--------------------GCACATTAATGTCTGCT-----------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
.................................................................................................................................................................................................TAA-------------------------------ATGTGCAGCCGCAGCGA..............................................................................................................................................................................................................................................................................................................2011.001001000
....................................................................................................................................................................GCTTCAAAAGTCTGTGCTA...........................................................................................................................................................................................................................................................................................................................................................................1911.001010000
droBip1
AA----------------------------------------------TCCCGCGCCAAACGAAAACGAAACACAAATT----------------------T------------ATAAATC-----AAAAAT--AAAACAAA---AA-TAAAAATCGCGCGCGCGCTTCAAAAGTCTGTGCTAAATAATGAGATAA-------------------------------ATGTGCAGCCGCAGCGAGAAATATTGTAAAGATTATTTTTAAAAATATGATCGGGTTTTGTTGGGCCATGTGTGCGTGGTGGTGGCTCTGACAATTGCAGTCTGTT------GATTATTTTTCTGTGCTCATTT----------TTAGGCCGTCTGTTGCATTTCAGTT--------------------GCACATTAATGTCTGCTGGTCCGGC---------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
dp5
GT----C--------------------------------------------GGCGCCAAACGAAATCGAAAGAGTAA---CCGAA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
No Reads
droPer2
AG----CAACAA---------------------------------------------AACCCCAATTGAGA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
No Reads
droVir3
GC--------------------------------------------------GCGCCA-----AAACGAAACAGAAA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
No Reads
droMoj3
AAGTGTCAGCAAACTCTTAATTTTTACA-----GA-------------GCCC-AATCAAGCG------------------AAAAACGCGCGCGCACAATTTT------------AGAAATA-----AAAAA---------AAATATT-AAAAAAACACACACACACACAACAAACC-----------------------------------------AATTTACCGTAAGCGGGATTAC-GTGCTAAATAAAGTAA-AACTA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
............................................................................................................................................................ACACACACACACAACAAACC-----------------------------------------.........................................................................................................................................................................................................................................................................................................................................2020.501000010
droGri2
AG----CG--------------------------------------------------CGCGAAAGCGAAACAGAAA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads

Generated: 05/18/2015 at 08:42 AM