ID:

dsi_12805

 Coordinate:

2r:5412896-5413045 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-31.3 -30.7 -30.6 -30.5

Flybase annnotation

Antisense to exon [2r_5412983_5413266_-]; Antisense to CDS [2r_5412983_5413266_-]

No Repeatable elements found

Sense Strand Reads

GAGTGCCCCGGCACCCACATCTGGAACGAGATCCGCGGCTGGTCCCACTGGTCTGGCTAGGTCCTTGACACGAACCACAATCAATAAAGTTAAACGCACCGTAATCCTGTTGTTTGTCTTGACAATACATTGCTTTATTAGGCAGTCGGGCGAATCTGAATATTGTCTTGGAAACCATGGACCCACTGCAACTCTATGGCTGTTGTGTAAACTAGGAACAGCACGAATAGGGACCACATGAACAGCCCAG
**************************************************(((..((..(((((..........(((....(((((........(((.(((....(((((((((......)))))).............)))....))))))........)))))...))).......)))))....))........)))************************************************** 		Read size # Mismatch Hit Count Total Norm Total M053
female body
 O001
Testis
 M025
embryo
 M024
male body		 SRR902008
ovaries
 SRR902009
testis
 GSM343915
embryo
 SRR553486
Makindu_3 day-old ovaries
 SRR553488
RT_0-2 hours eggs
..................................................................GACACGAACCACAATCAATA.................................................................................................................................................................... 20 0 1 2.00 2 0 2 0 0 0 0 0 0 0
...........................................................GGTCCTTGACACGAACCACA........................................................................................................................................................................... 20 0 1 2.00 2 0 2 0 0 0 0 0 0 0
.......................................................................................................ATTCTGATGTTTGTCTTGAC............................................................................................................................... 20 2 1 1.00 1 0 0 0 1 0 0 0 0 0
............................................................GTCCTTGACACGAACCACAAT......................................................................................................................................................................... 21 0 1 1.00 1 0 0 1 0 0 0 0 0 0
....................................................CAGGCTAGGTCCTTGACACGAACCACAAT......................................................................................................................................................................... 29 1 1 1.00 1 1 0 0 0 0 0 0 0 0
................................................................................TCAATAAAGTTAAACGCACCGTAAAA................................................................................................................................................ 26 2 1 1.00 1 1 0 0 0 0 0 0 0 0
..GTGCCCCGGCACCCACATCTGGAACG.............................................................................................................................................................................................................................. 26 0 1 1.00 1 1 0 0 0 0 0 0 0 0
.......................GAACGAGATTCGCGGCTG................................................................................................................................................................................................................. 18 1 2 1.00 2 0 0 2 0 0 0 0 0 0
.....................................................AGGCTAGGTCCTTGACACGAACCACAATC........................................................................................................................................................................ 29 1 1 1.00 1 1 0 0 0 0 0 0 0 0
.....................TGGAACGAGATTCGCGGCTGGT............................................................................................................................................................................................................... 22 1 2 0.50 1 1 0 0 0 0 0 0 0 0
..........GCACCCACATCTGGAACGAGATCCGC...................................................................................................................................................................................................................... 26 0 2 0.50 1 1 0 0 0 0 0 0 0 0
................ACATCTGGAACGAGATCCGCG..................................................................................................................................................................................................................... 21 0 2 0.50 1 1 0 0 0 0 0 0 0 0
..........................CGAGATTCGCGGCTGGTCCCACTGGTCT.................................................................................................................................................................................................... 28 1 2 0.50 1 1 0 0 0 0 0 0 0 0
....................................GGCTGGTCCCACTGGTCT.................................................................................................................................................................................................... 18 0 2 0.50 1 1 0 0 0 0 0 0 0 0
.............CCCACATCTGGAACGAGATCC........................................................................................................................................................................................................................ 21 0 2 0.50 1 1 0 0 0 0 0 0 0 0
...............CACATCTGGAACGAGATTCGCGGCT.................................................................................................................................................................................................................. 25 1 2 0.50 1 0 0 1 0 0 0 0 0 0
............................AGATTCGCGGCTGGTCCCACTGGT...................................................................................................................................................................................................... 24 1 2 0.50 1 0 0 0 0 0 0 1 0 0
...........................GAGATTCGCGGCTGGTCCCACTGGTCTG................................................................................................................................................................................................... 28 1 2 0.50 1 1 0 0 0 0 0 0 0 0
......................GGAACGAGATCCGCGGCTGGTTT............................................................................................................................................................................................................. 23 2 2 0.50 1 0 0 0 0 0 1 0 0 0
..........................................................................................................................................TACGCTGTCGCGCGAATCTG............................................................................................ 20 3 2 0.50 1 0 0 0 0 1 0 0 0 0
........................AACGAGATTCGCGGCTGGTCCCACTGGT...................................................................................................................................................................................................... 28 1 2 0.50 1 1 0 0 0 0 0 0 0 0
....GCCCCGGCACCCACATCTGG.................................................................................................................................................................................................................................. 20 0 3 0.33 1 1 0 0 0 0 0 0 0 0
.....CCCCGGCACCCTCATCTGGAACGA............................................................................................................................................................................................................................. 24 1 3 0.33 1 1 0 0 0 0 0 0 0 0
....GCCCCGGCACCCACATCTGGAAC............................................................................................................................................................................................................................... 23 0 3 0.33 1 0 0 1 0 0 0 0 0 0
.................................................................................................................................................ACGGGCGAATCTGAA.......................................................................................... 15 1 7 0.14 1 0 0 0 0 0 0 0 1 0
............................AGATCTGCGGCCGGTC.............................................................................................................................................................................................................. 16 2 20 0.10 2 0 0 0 0 0 0 0 0 2

Anti-sense strand reads

-----------------------------------------------------------------------------------------------------------------------------------------#################################################################################################################
CTCACGGGGCCGTGGGTGTAGACCTTGCTCTAGGCGCCGACCAGGGTGACCAGACCGATCCAGGAACTGTGCTTGGTGTTAGTTATTTCAATTTGCGTGGCATTAGGACAACAAACAGAACTGTTATGTAACGAAATAATCCGTCAGCCCGCTTAGACTTATAACAGAACCTTTGGTACCTGGGTGACGTTGAGATACCGACAACACATTTGATCCTTGTCGTGCTTATCCCTGGTGTACTTGTCGGGTC
**************************************************(((..((..(((((..........(((....(((((........(((.(((....(((((((((......)))))).............)))....))))))........)))))...))).......)))))....))........)))************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR618934
dsim w501 ovaries
 M024
male body		 SRR553486
Makindu_3 day-old ovaries
 M023
head
 SRR553488
RT_0-2 hours eggs
 SRR553485
Chicharo_3 day-old ovaries
 SRR553487
NRT_0-2 hours eggs
..............................................................................................GCGCAGCATTATGACAACAAA....................................................................................................................................... 21 3 1 1.00 1 1 0 0 0 0 0 0
....................................................................................................................................................................CAGAACCTTTGCTATCCGG................................................................... 19 3 15 0.80 12 0 7 0 5 0 0 0
...........................................................CCAGGCACTGTGCTTG............................................................................................................................................................................... 16 1 2 0.50 1 1 0 0 0 0 0 0
..............................................................GGACATGTGCTTGGTGTT.......................................................................................................................................................................... 18 2 4 0.25 1 0 0 1 0 0 0 0
....................................................................................................................................................................................................................................TCCCGGGTGTACTTGTCGAT.. 20 3 5 0.20 1 0 1 0 0 0 0 0
................TGTCGACCTTGCTCTCTGCGC..................................................................................................................................................................................................................... 21 3 6 0.17 1 0 0 1 0 0 0 0
....AGGGGCGGTGGGTGTTGACCT................................................................................................................................................................................................................................. 21 3 7 0.14 1 0 0 0 0 1 0 0
..................................................CAGACCGTTACAGGAACT...................................................................................................................................................................................... 18 2 10 0.10 1 0 0 0 0 0 1 0
............................................................................................................CAACATACAGAGCTGTTA............................................................................................................................ 18 2 11 0.09 1 1 0 0 0 0 0 0
.....................................................................................................................................AATTAATCCGTCAGC...................................................................................................... 15 1 20 0.05 1 1 0 0 0 0 0 0
.........................GGCTCTAGGCGCCGCC................................................................................................................................................................................................................. 16 2 20 0.05 1 0 0 0 0 0 0 1
...........................................................................................................................................................................................................................TGCTGCTTATCCCTGG............... 16 2 20 0.05 1 0 0 1 0 0 0 0

Generated: 04/23/2015 at 01:50 PM