ID:

dsi_12800

Coordinate:

3r:17241127-17241404 +

Confidence:

Candidate

Type:

Unknown

[View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-8.4 -8.3 -8.3

Flybase annnotation

CDS [3r_17240938_17241102_+]; Antisense to CDS [3r_17241414_17241544_-]; five_prime_UTR [3r_17241403_17241538_+]; exon [3r_17241403_17241538_+]; Antisense to three_prime_UTR [3r_17241337_17241413_-]; Antisense to exon [3r_17241337_17241544_-]; three_prime_UTR [3r_17241103_17241259_+]; exon [3r_17240938_17241259_+]

No Repeatable elements found

Sense Strand Reads

#######################################################################################################################################################################################-----------------------------------------------------------------------------------------------------------------------------------------------####################################################
ATCATCCGACCGATTGTAAAACATAAGATGTCTCCCAGTCTTTGTTGAAAGTGTGTGTTGTTCTGGGTTGTTGTTTAAGTGTCTGGCCATTGCCAAGAAATAGTCAGATGTGATTTTGAATAACTTTAAATAATTGGCTTCAATTAATAGCTTTAAAATAACACTAAGTCAAGTAGACACACTAAGTAATGCAAGGTGTAGTTATCTCAAAAAGACAAATACATATATGGATGAGATGTTTCCAGTGTTCTCTTCTATTTACTTTAACTGAATATGCATATATTTAGATAAGAAGGCTCTTATCCACATTTCACATTTTGCTGTTTAGGAAATCAAATCAAAAGCTTGAGCCCTTGTCCTCAGGATATAAAAAGTATA
**************************************************((.((.....((((.(((.((.(((.........))).)).))).)))).....)).))......***********************************************************************************************************************************************************************************************************************************************************************
Read size # Mismatch Hit Count Total Norm Total SRR553485
Chicharo_3 day-old ovaries
SRR553486
Makindu_3 day-old ovaries
SRR618934
dsim w501 ovaries
M024
male body
SRR902009
testis
O001
Testis
M023
head
M025
embryo
O002
Head
GSM343915
embryo
SRR553488
RT_0-2 hours eggs
SRR553487
NRT_0-2 hours eggs
M053
female body
..........................................................................................TGCCAAGAAATAGTCAGATGTGATT....................................................................................................................................................................................................................................................................... 25 0 1 5.00 5 5 0 0 0 0 0 0 0 0 0 0 0 0
............................TGTCTCCCAGTCTTTGTTGAAAGTGTG................................................................................................................................................................................................................................................................................................................................... 27 0 1 2.00 2 0 0 2 0 0 0 0 0 0 0 0 0 0
............................................TTGTAAGGGTGAGTTGTTCTGG........................................................................................................................................................................................................................................................................................................................ 22 3 1 2.00 2 0 2 0 0 0 0 0 0 0 0 0 0 0
..................................................GTGTGTGTTGTTCTGGGTTG.................................................................................................................................................................................................................................................................................................................... 20 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0
.....................................................................GTTGTTTAAGTGTCTGGCC.................................................................................................................................................................................................................................................................................................. 19 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0 0
.............................................................................................................................................................................................TGCAAGGGGTAGTTATCTCAAAA...................................................................................................................................................................... 23 1 1 1.00 1 0 0 0 0 0 0 0 0 0 1 0 0 0
.....................................................................................................................................................................................................................................................................................................................................................AAGCTTGAGCCCTTGTCCTCA................ 21 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0
........................................................................................ATTGCCAAGAAATAGTCAGATGT........................................................................................................................................................................................................................................................................... 23 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0
........................................................................................................CAGATGTGATTTTGAATAACT............................................................................................................................................................................................................................................................. 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0
............................................................TTCTGGGTTGTTGTTTAAGTGTCTGGC................................................................................................................................................................................................................................................................................................... 27 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................AGGTGTAGTTATCTCAAAAAGGCAA................................................................................................................................................................ 25 1 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0
...................................................TGTGTGTTGTTCTGGGTTGTT.................................................................................................................................................................................................................................................................................................................. 21 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0
..............................................................................................................................................................................................................................................................................................................................................AAATCAAAAGCTTGAGCCCTTGTCCTC................. 27 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0
......................................................................................................................................................................................TAAGTAATGCAAGGTGTAGTTATCTCAAAA...................................................................................................................................................................... 30 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................TAATGCAAGGTGTAGTTATCTCAAAAA..................................................................................................................................................................... 27 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................TAAGTAAAGCAAGGTGTAGTTATCTCA......................................................................................................................................................................... 27 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................AGATGTGATTTTGGATAACTT............................................................................................................................................................................................................................................................ 21 1 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 1 0
.....CCGACCGATTGTAAAACATAAGATG............................................................................................................................................................................................................................................................................................................................................................ 25 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0
........................................TTTGTTGAAAGTGTGTGTTGTTCTGGG....................................................................................................................................................................................................................................................................................................................... 27 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0
................................................................TGTGTGTTGTTTAAGTGTCTGGCC.................................................................................................................................................................................................................................................................................................. 24 3 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0
.............................................................................................CAAGAAATAGTCAGATGTGATTTTGAA.................................................................................................................................................................................................................................................................. 27 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................................................................................................................................................................TTGAGCCCTTGTCCTCAGGAT............ 21 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0
................................................................................................................................................................................................................................................................................................................................CTGTTTAGGAAATCAAATCAA..................................... 21 0 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0 0 0
..................................................................................................................TTTGGATAACTTTAAATAATTGGCTT.............................................................................................................................................................................................................................................. 26 1 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0
...............................................................................................AGAAATAGTCAGATGTGATTTTGA................................................................................................................................................................................................................................................................... 24 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0
.............................................................................................................................................................................................TGCAAGGTGTAGTTATCTCAAAAAGA................................................................................................................................................................... 26 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................TAAAATAACACTAAGTC................................................................................................................................................................................................................ 17 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
..........................................TGTTGAAAGTGTGTGTTGTT............................................................................................................................................................................................................................................................................................................................ 20 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 1
...................................................................................................................TTGGATAACTTTAAATAATTGGATT.............................................................................................................................................................................................................................................. 25 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................TGGATAACTTTAAATAATTGGATTCAAT.......................................................................................................................................................................................................................................... 28 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................CACACTAAGTAATGCAAGGTG.................................................................................................................................................................................... 21 0 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0 0 0
.........................................................................................TTGCCAAGAAATAGTCAGATGTGAT........................................................................................................................................................................................................................................................................ 25 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0
..CATCCGACCGATTGTAAAAC.................................................................................................................................................................................................................................................................................................................................................................... 20 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0 0
.......................................................................................................TCAGATGTGATTTTGGATAACTTTAAA........................................................................................................................................................................................................................................................ 27 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................GTGTAGTTATCTCAAAAAGACA................................................................................................................................................................. 22 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0
....................................................................................................TAGTCAGATGTGATTTTGGATAACTT............................................................................................................................................................................................................................................................ 26 1 1 1.00 1 0 0 0 0 0 0 0 0 0 0 1 0 0
.........................................................................................TTGCCAAGAAATAGT.................................................................................................................................................................................................................................................................................. 15 0 2 0.50 1 0 0 1 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................GTAGGTATCTCAAAAA..................................................................................................................................................................... 16 1 4 0.25 1 0 0 1 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................................................................................................ATATGGATGAGGTGTGTC........................................................................................................................................ 18 2 7 0.14 1 0 0 0 0 0 0 0 0 0 1 0 0 0
...................................................................................................................................................................................................................AATACTAATACTTATATGGAT.................................................................................................................................................. 21 3 17 0.12 2 1 0 0 0 0 0 0 0 0 0 1 0 0
.........................................................................................................................................................................................................................................................CTCGTCTATTTACCTTATCT............................................................................................................. 20 3 11 0.09 1 0 0 1 0 0 0 0 0 0 0 0 0 0
..........................................................................................TGCCTACAAATAGTCAGA.............................................................................................................................................................................................................................................................................. 18 2 15 0.07 1 1 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................TAGGTGGTTGTTTAAGT.......................................................................................................................................................................................................................................................................................................... 17 2 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 1 0
................................................................................................................................................................................................................................................................................TATGCATATAGTTAGATG........................................................................................ 18 2 20 0.05 1 0 0 1 0 0 0 0 0 0 0 0 0 0
..........................................................TGTTACGGGTTGTTG................................................................................................................................................................................................................................................................................................................. 15 2 20 0.05 1 0 0 1 0 0 0 0 0 0 0 0 0 0
..............................................................................................................TGACTCTGAATAACTTT........................................................................................................................................................................................................................................................... 17 2 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0 0 0

Anti-sense strand reads

--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------######################################################################################################################
TAGTAGGCTGGCTAACATTTTGTATTCTACAGAGGGTCAGAAACAACTTTCACACACAACAAGACCCAACAACAAATTCACAGACCGGTAACGGTTCTTTATCAGTCTACACTAAAACTTATTGAAATTTATTAACCGAAGTTAATTATCGAAATTTTATTGTGATTCAGTTCATCTGTGTGATTCATTACGTTCCACATCAATAGAGTTTTTCTGTTTATGTATATACCTACTCTACAAAGGTCACAAGAGAAGATAAATGAAATTGACTTATACGTATATAAATCTATTCTTCCGAGAATAGGTGTAAAGTGTAAAACGACAAATCCTTTAGTTTAGTTTTCGAACTCGGGAACAGGAGTCCTATATTTTTCATAT
***********************************************************************************************************************************************************************************************************************************************************************((.((.....((((.(((.((.(((.........))).)).))).)))).....)).))......**************************************************
Read size # Mismatch Hit Count Total Norm Total M024
male body
SRR553486
Makindu_3 day-old ovaries
M023
head
SRR553485
Chicharo_3 day-old ovaries
O001
Testis
SRR902009
testis
O002
Head
SRR618934
dsim w501 ovaries
SRR902008
ovaries
SRR553488
RT_0-2 hours eggs
SRR553487
NRT_0-2 hours eggs
.............................................................................................................................................................................................................................................CCAAGGTGACAGGAGAAGA.......................................................................................................................... 19 3 18 3.56 64 55 0 9 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................................................................................................................................................................TTCGAACTCGGGAACAGGAGT................ 21 0 1 2.00 2 1 0 1 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................................................................................................................................................................TCGGGAACAGGAGTCCTATAT......... 21 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0
...TAGGCTGGCTAACATTTTGTA.................................................................................................................................................................................................................................................................................................................................................................. 21 0 1 2.00 2 1 0 1 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................................................................................................................TCTTCCGAGAATAGGTGTAAAGTGT............................................................... 25 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0
....................................................................................................................................................................................................................................................CACAAGAGAAGATAAATGCAATTGA............................................................................................................. 25 1 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0
.................................................................................................................................................................................................................................................................................................................................................AGTTTTCGAACTCGGGAACAGGAGT................ 25 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
.......................................................................................................................................CCGAAGTTAAGTATGGAA................................................................................................................................................................................................................................. 18 2 3 1.00 3 3 0 0 0 0 0 0 0 0 0 0
...................................................................................................TATCAGTCTACACTAAAACTT.................................................................................................................................................................................................................................................................. 21 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0
................................................................................................................................................................................................................................................AGGTCACAAGAGAAGATAAATGAAAT................................................................................................................ 26 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................TGTGATTCATTACGTTCC...................................................................................................................................................................................... 18 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0
........................................................................................................................................................................................................................................CTCTACAAAGGTCACAAGAGA............................................................................................................................. 21 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0
.............................CAGAGGGTCAGAAACAACTTTC....................................................................................................................................................................................................................................................................................................................................... 22 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................................................CTACAAAGGTCACAAGAGAAGAT......................................................................................................................... 23 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0
..........................................................................................................................................................................................................................................................................................................................................TTAGTATAGTTTTCGAACTCGGGA........................ 24 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
TAGTAGGCTGGCTAACATTTT..................................................................................................................................................................................................................................................................................................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................................................................................................................................................................................CGGGAACAGGAGTCCTATATCTTTCAT.. 27 1 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0
........................................................................................................................................................................................................................................................AGAGAAGATAAATGAAATTGACTTATACTT.................................................................................................... 30 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
....................................................................................CCGGTAACGGTTCTTTATCAGT................................................................................................................................................................................................................................................................................ 22 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0
...............................................................................................................................................................................................................................................................................................................GGTGTAAAGTGTAAAACGACA...................................................... 21 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0
........................TTCTACAGAGGGTCAGAAA............................................................................................................................................................................................................................................................................................................................................... 19 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................................................................................................................TCTTCCGAGAATAGGTGTAAAGTGTA.............................................................. 26 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0
...............................................................................................................................................................................................................................................................................................................................................TTAGTTTTCGAACTCGGGAACAGGAGTC............... 28 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................................................................................................................................................................CGTAAAACGACAAATCCTTTAGTTTAGT...................................... 28 1 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0
....................................................................................................................................................................................................................................................CACAAGAGAAGATAAATGCAATTGACT........................................................................................................... 27 1 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0
..............................................................................................................................................................................................................................................CAAGGTCACAGGAGAAGA.......................................................................................................................... 18 2 10 0.60 6 3 0 3 0 0 0 0 0 0 0 0
.......................................................................................................................................CCGAAGTTAAGAATCGAA................................................................................................................................................................................................................................. 18 2 7 0.57 4 4 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................................................ATAAACCTACTCTACAAA......................................................................................................................................... 18 1 2 0.50 1 0 0 0 0 0 0 1 0 0 0 0
..................................................................................................................................................................................................................................................................................................................................................................TCAGGAGTCCTAAATTTTTTAT.. 22 3 3 0.33 1 0 0 0 0 0 0 0 0 0 1 0
........................................................................................................................................................................................................................................................AGAGAAGCTAACTGAAATGGA............................................................................................................. 21 3 6 0.17 1 0 0 0 0 0 0 0 0 0 0 1
.........................................................................................................................................................................................................................................................................................................................GTAAAACAACACATCCTT............................................... 18 2 9 0.11 1 0 0 0 0 0 0 1 0 0 0 0
..........................................................................................................................................................................................................ATTGAGTTGTTCTGTATATG............................................................................................................................................................ 20 3 16 0.06 1 0 0 0 1 0 0 0 0 0 0 0
......................................................CGCCACTAGACCCAACAA.................................................................................................................................................................................................................................................................................................................. 18 3 20 0.05 1 0 0 0 0 0 0 0 0 0 1 0

Generated: 04/23/2015 at 03:14 PM