dsi_12788

exon [3l_1238495_1238731_+]; CDS [3l_1238495_1238731_+]; exon [3l_1238180_1238342_+]; CDS [3l_1238180_1238342_+]; intron [3l_1238343_1238494_+]

##################################################--------------------------------------------------------------------------------------------------------------------------------------------------------################################################## GAGCAATGACTACTCTCAACTGGGACACGATCTGCCCACCAAAAGGCCACGTATGTCGCCATTTCGTATGTAATCTTCATTTATCGTCTTGTCTGTCCACTCTCCACTAACTCCACCTCATCTCCAAACTCACCAACTACGCGAGCTACTGCTGTGAACCGAGTCTAAATCCCGCAATCATCTTCCGGCCGACTTTTTGCAGAGCTTATCCCCGAACTGCAGGATTACGTGATCATCCAGATCTCCTGTGGC ************************************************(((..((((.................................................................................))))..)))..(((((((..(((((......(((.((.....)).)))..))))))))))))************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	SRR553485 Chicharo_3 day-old ovaries	M023 head	SRR618934 dsim w501 ovaries	M025 embryo	SRR553487 NRT_0-2 hours eggs	M024 male body
....AATGACTACTCTCAACTGGGG...................................................................................................................................................................................................................................	21	1	1	1.00	1	0	1	0	0	0	0
......TGACTACTCTCAACTGGGACACGATC............................................................................................................................................................................................................................	26	0	1	1.00	1	1	0	0	0	0	0
........ACTACTCTCAACTGGGACACGATCTGCC........................................................................................................................................................................................................................	28	0	1	1.00	1	1	0	0	0	0	0
....AATGACTACTCTCAACTGGGA...................................................................................................................................................................................................................................	21	0	1	1.00	1	0	1	0	0	0	0
.............................................................................................................................................CAAGCTATTGCTGTGACCCGAG.........................................................................................	22	3	1	1.00	1	0	0	1	0	0	0
................CAACTGCGACAAGATCTGCC........................................................................................................................................................................................................................	20	2	2	0.50	1	0	0	0	1	0	0
...................................................................................................................................................ACTGCTGTGACCCGA..........................................................................................	15	1	4	0.25	1	0	0	1	0	0	0
...............................................................................................................................................AGCTACGGCTATGAACC............................................................................................	17	2	5	0.20	1	1	0	0	0	0	0
.......................................................................................................................ATCTCCAAAGTCACCA.....................................................................................................................	16	1	6	0.17	1	1	0	0	0	0	0
....................................AACCAAAAGGCCACGT........................................................................................................................................................................................................	16	1	6	0.17	1	0	0	1	0	0	0
......................................................................................................................................................GCTGTGACCCGAGTC.......................................................................................	15	1	7	0.14	1	0	0	1	0	0	0
.......GACGACTCTTAACTGGTA...................................................................................................................................................................................................................................	18	3	20	0.10	2	0	0	0	0	2	0
................................................................................................................................................................GAGGCTAAATCCTGCAAT..........................................................................	18	2	12	0.08	1	0	0	1	0	0	0
.......GAATACTGTCAGCTGGGAC..................................................................................................................................................................................................................................	19	3	12	0.08	1	0	0	0	0	0	1

CTCGTTACTGATGAGAGTTGACCCTGTGCTAGACGGGTGGTTTTCCGGTGCATACAGCGGTAAAGCATACATTAGAAGTAAATAGCAGAACAGACAGGTGAGAGGTGATTGAGGTGGAGTAGAGGTTTGAGTGGTTGATGCGCTCGATGACGACACTTGGCTCAGATTTAGGGCGTTAGTAGAAGGCCGGCTGAAAAACGTCTCGAATAGGGGCTTGACGTCCTAATGCACTAGTAGGTCTAGAGGACACCG ************************************************(((..((((.................................................................................))))..)))..(((((((..(((((......(((.((.....)).)))..))))))))))))************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	SRR902009 testis	SRR553487 NRT_0-2 hours eggs	M053 female body	M024 male body	SRR553486 Makindu_3 day-old ovaries	GSM343915 embryo
..................................................................................................................................................................................GTAGAAGGCCGGCTGAAAAAC.....................................................	21	0	1	1.00	1	1	0	0	0	0	0
......................................................................................................................................................................TTTAAGGCGTTAGAAGAAGG..................................................................	20	2	1	1.00	1	1	0	0	0	0	0
...............................................................................................................TGGTGGAGTCGAGGGTTGAGT........................................................................................................................	21	3	3	0.67	2	0	2	0	0	0	0
...........................................................................................................................................................................................CGGGTCAAAAACGTCTCGAATTG..........................................	23	3	2	0.50	1	0	0	1	0	0	0
.....................................................................................................................................................................................TTTGGCCGGCTGAAAAACGTCT.................................................	22	3	2	0.50	1	1	0	0	0	0	0
.....................................................................................................................................................................................................................................ACTAGTATGTCTAGATGA.....	18	2	3	0.33	1	0	0	0	1	0	0
..............................................................................................CAGGTGAGAGCTGAT...............................................................................................................................................	15	1	5	0.20	1	0	1	0	0	0	0
.............................................................................................................TCAGGTGGAGTAGATGTT.............................................................................................................................	18	2	7	0.14	1	0	0	0	1	0	0
..................................................................................................................TGGAGTAGAGCTTTG...........................................................................................................................	15	1	7	0.14	1	0	0	0	0	1	0
.....................................................................................................................................................................ATTTAGGGAGTTGGTAGAAA...................................................................	20	3	13	0.08	1	0	0	0	0	0	1
......................CCTTTGCTAGATGGGGGGT...................................................................................................................................................................................................................	19	3	13	0.08	1	0	1	0	0	0	0

Species	Coordinate	ID	Alignment
droSim2	3l:1238293-1238544 +	dsi_12788	GAGCAATGACTACTCTCAACTGGGACACGATCTGCCCACCAAAAGGCCACGTATGTCGCCATTTCGTATGTAAT----CTTCATTTATCGTCTTGTCTGTCCAC----------TC---------TC-----------------------------------------CA-C----TAACT----CC--ACCTCATCTCCAA-------------ACTCAC---CAAC-----------------T-------A----------------CGCGAG---CTACTGCTG---TGAAC----CGAGTCTAAATC-CCGCAAT------------------------CATCTTCCGGCCGACTTTTTGCAGAGCTTATCCCCGAACTGCAGGATTACGTGATCATCCAGATCTCCTGTGGC
droSec2	scaffold_2:1357016-1357267 +		GAGCAATGACTACTCTCAACTGGGACACGATCTGCCCACCAAAAGGCCACGTATGTCGCCATTTCGTATGTAAT----CTTCATTTATCGTCTTGTCTGAACAC----------TC---------TC-----------------------------------------CA-C----TAACT----CC--ACCTCATCTCCAA-------------ACTCAC---CAAC-----------------T-------A----------------CGCGAG---CTACTGCTG---TGAAC----CGAGTCTAAATC-CCGCAAT------------------------CATCTTCCGGCCGACTTTTTGCAGAGCTTATCCCCGAACTGCAGGATTACGTGATCATCCAGATATCCTGTGGC
dm3	chr3L:1314271-1314522 +		GAGCAACGACTACTCCCAGCTGGGCCACGATCTGCCCACCAAAAGGCCACGTATGTCGCCATTTCGTATGTAAT----CTTCATTTATCGTCTTGTCTGTCCAC----------TC---------TC-----------------------------------------CA-C----TAACT----CC--ACCTCATCTCCAT-------------ACTCAC---CAAC-----------------T-------A----------------CGCGAG---CCACTGCTG---TGAAC----CGAGTCTAAACC-CCGCAAT------------------------CATCTTCCGGCCGACTTTTTGCAGTGCTTATCCCCGAACTGCAGGATTACGTGATCATCCAGATCTGCTGCGGC
droEre2	scaffold_4784:1297147-1297383 +		GAGCAACGACCACTCCCAACTGGGACACGATCTGCCCACCAAAAGGCCACGTATGTCGCCATTTCGTATGTAAT----CTTCATTTATCGTCTTGTCTATCCAC----------TG---------TC-----------------------------------------CA-C----TAACT----TC--ACCTCATCACCCA-------------ACTCAC---CAAC-----------------T-------T-------------------------CCACTGGTG---CGAAT----CGAGTCTAAATC-CCGCA---------------------------------CGGCCGACTTTTTGCAGTGCTTATCCCCGAACTGCAGGACTATGTGATCATCCAGATCTCCTGCGGC
droYak3	3L:1272971-1273216 +		GAGCAACGACCACTCCCAACTGGGACACGAACTGCCCACCAAAAGGCCACGTATGTCGCCATTTCGTATGTAAT----CTTCATTTATCGTCTTGTCTATCCAC----------TC---------TC-----------------------------------------CA-C----TAACT----CC--ACCTCATCACCAA-------------ACTCAC---CCAC-----------------T-------A-------------------------CCACTGGTG---TGAAT----CGAGTCTAAAAC-CCGCACT------------------------CATCTCCCGGCCGACTTTTTGCAGTGCTTATACCGGAGCTGCAAGATTACGTGGTCATCCAGATCTCCTGCGGC
droEug1	scf7180000409007:137230-137478 +		AAGCAATGACCACTCCCAACTGGGACACGAACTGCCCACCAAAAGGCCACGTATGTCGCCATTTCGTATGTAAT----CTTCATTAATCGACTTGTCTTTCCAC----------TC---------CC----------------------------------------------------------AC--ATCTCATCACCAA-------------AC-CAC---CAAC-----------------TTGTCT-TT----------------CATAAG---CGACTGCTG---TAAAC----GGATCCTAAGTC-CCGAACT------------------------CAATTCTATGGCGACTCTTTGCAGTGCTTATCCCGGAACTTCAAGACTATGTGGTCATCCAGATTGCCTGCGGC
droBia1	scf7180000300910:1417634-1417888 +		GAGCAACGACCACTCCCAACTGGGACACGAACTGCCCACCAAAAGGCCACGTATGTCGCCATTTCGTATGTAAT----C-TCATTTATCGTCTTGTCTCTCCAC----------TA---------TC-----------------------------------------CA-C----TCACT----CC--ACCTCATCAACGC--------ATCACCTCAACCACCAA-------------------------AC----------------TGAAAA---TGTGTAACC--AA--------GGTGGCCGAATC-CCGGACT------------------------CACTCCTCTGCCGACTCTTTGCAGTGCTTATCCCCGAACTGCAGGACTACGTGGTCACCCAGATCGCCTGCGGC
droTak1	scf7180000414671:297066-297308 +		CAGCAACGACCACTCCCAGCTGGGTCACGAACTGCCCACCAAAAGGCCACGTATGTCGCCATTTCGTATGTAAT----CTTCATTTATCGTCTTGTCTCTCCAC----------CC---------AC-----------------------------------------CA-C----TCACT----CCACACCTCATC---------------------CAC---CAAC-----------------G----------------------------------CACTGCTG---TCCACATGGAGCGCCTAAGGCACCGCACT------------------------CACTTCTCCGCCGACTCTTTGCAGTGCTCATCCCCGAACTGCAGGACTATGTGGTCATCCAGATCGCCTGCGGC
droEle1	scf7180000491249:4311518-4311774 -		GAGCAACGACCACTCCCAACTGGGACACGAACTGCCCACCAAAAGGCCACGTATGTCGCCATTTCGTATGTAAT----CTTCATTTATCGTCTTGTCTCTCCAC----------TA---------TC-----------------------------------------CAAC----CTACT----CC--ACCTCATCACCAC----------------CAC---ATGC-----------------T-----C--CACAA------------ATGGGCCACCACTGCTG---TAAGC----CGAGGCTAAGTC-CCGGACT------------------------CAACCGTCTGCCTAATCTTTGCAGTGCTCATCCCCGAACTGCAGGACTATGTGGTCATCCAGATTGCGTGCGGC
droRho1	scf7180000779696:36903-37158 -		GAGCAACGACCACTCGCAACTGGGACACGAACTGCCCACCAAAAGGCCACGTATGTCGCCATTTCGTATGTAAT----CTTCATTTATCGTCTTGTCTCTCCAT----------TG---------TC-----------------------------------------C-------TAACT----CC--ACCTCATCACCAC----------------CACCAACAAC-----------------TGCTAT-TC----------------AATGGG---CCACTGCTG---TAAAC----CGAGGCTAAATC-CCGGACT------------------------CACTCCTCTGCCGATTCTTTGCAGTGCTCATTCCCGAACTGCAGGACTATGTGGTCATCCAGATTGCTTGCGGC
droFic1	scf7180000454113:766483-766732 -		CAGCAACGATCACTCACAACTGGGACATGAACTGCCCACCAAAAGGCCACGTATGTCGCCATTTCGTATGTAAA-----TTCATTTATCGTCTTGTCTCTCCAT----------TC---------TC-----------------------------------------C-------TAACG----CC--ATC-CATCACCAT-------------AC-CAC---CTGC-----------------T-------CCTC-------------CTTTGG---ACACTGCTG---TGATC----CGATGCTAAATC-CCGGACT------------------------CACTCCTCTACCGACTCATTGCAGTGCTTATCCCCGAACTTCAGGACTATGTGGTCATCCAGATTGCCTGCGGA
droKik1	scf7180000302441:1990309-1990550 -		CAGCAATGACCACTCCCAGCTGGGTCACGACCTGCCCACCAAAAGGCCACGTATGTCGCCATTTCGTATGTACATAATCTTCATGTATCGTCTTGACTTTCCTT----------TC---------AC-----------------------------------------TA-C----TATCT----CC--ACCTCATCGTCAC-------------CGCCACCACCAA-----------------------------------------------------CACGGCTG---T-AAC----CGAGT------C-CC--ACT--------------------TACTTA--TCTCTGCGGACTCTTTGCAGTGCTTATCCCGGAGCTGCAGGACTATGTGATTATCCAGATTGCCTGCGGC
droAna3	scaffold_13337:6599984-6600251 -		AAGCAACGATCACTCTCAGCTGGGACACGATCTGCCCACCAAAAGGCCACGTATGTCGCCATTTCGTATGTGGTC--TCTTCATATATCAGCTTGTCTTTTCTT----------TTTTTGTTTTCTCCTC--------------------------------------CA-------CCCT----CC--TTTTCATCACCAC----------------CAC---CTCT-----------------T-----C--CTC--------------ATGTATCACCACCGCTGTA-ATAAC----TAAGCCTACATT-CCAGACT------------------------CATCCTTTTGCCGCGTATTTACAGTGCTTATTCCTGAGCTGCTGGACTATGTGGTTGTTCAGATCGCGTGCGGC
droBip1	scf7180000396709:331453-331716 -		AAGCAACGATCACTCCCAACTGGGTCACGATTTGCCCACCAAAAGGCCACGTATGTCGCCATTTTGTATGTGATC--TCTTCATATATCGTCTTGTCTTTTCAT----------TT-TTGTTTTCTC-----------------------------------------CT-C----CAACCTCCTCC--TTTTCATCACCAC----------------------CTCT-----------------T-----C--CT--------------CATGGA---TCACCGCTGAA-AAAAC----TAAGCCTAAATA-CCACACT------------------------CATTCGTTTGCCCCATACTTACAGTGCTTATACCTGAGCTGCAGGACTATGTGATTATTCAGATCGCCTGTGGC
dp5	XR_group8:796003-796246 -	dps_3223	AAACAACGATCACCACCAGCTTGGCCACGAGTTGCCCACCAAAAGGCCACGTATGTCGCCGTTTAGTATGTAAA----TTTCATTAATCGTGTTTTGT--ACTC----------TC--------------------------------------------------------------------------TTTCATCACTAAATATTCTA------TCCAT---CCAT-----------------G-------A----------------CTCGAA---GAACC-------------------------------GGCATCAAATGACTACCCATTCAACCACTCG-CTTCTTCTCGCTCTTTTTCAGTTCCGATACCTGAGCTGCAGGCCTATGTTGTCATCCAGATTGCCTGTGGC
droPer2	scaffold_32:686675-686918 +	dpe_1474	AAACAACGATCACCACCAGCTTGGCCACGAGTTGCCCACCAAAAGGCCACGTATGTCGCCGTTTAGTATGTAAA----TTTCATTAATCGTGTTTTGT--ACTC----------TC--------------------------------------------------------------------------TTTCATCACTAAATATTCTA------TCCAT---CCAT-----------------G-------A----------------CTCGAA---GAACC-------------------------------GGCATCAAATGACTACCCATTCAACCGCTCG-CTTCTTCTCGCTCTTTTTCAGTTCCGATACCTGAGCTGCAGGCCTATGTTGTCATCCAGATTGCCTGTGGC
droWil2	scf2_1100000004768:992795-993120 -		CAACAATGATCAGGCCCAGCTGGGACATAATTTGCCAACTAAAAGGCCACGTATGTCGCCATTTCGTATGTAAT-----TCCATATGTCGTATCGTCTATTTTCCCCACTTCTTTTTCTGTCTCCATCTCTTTGTTCTTCTTTTGTCATTAACCACCACTTCTACTACTA-C----TACCA----CC--AC--CATCACCAC-------------CATCAC---CATCGCTACACTCCACTTCTCTGTCAT-TC----------------AGCAAA---TGCTTGGTG---GGAGT----TGACACTCTGGC-CTGACAT------------------------AAT------CTTAATCCTTTCCAGTCTTAATACCCGAGCTCCAGAACTATGTGGTGGTTGCTATAGCTTGTGGC
droVir3	scaffold_13049:8536891-8537129 -	dvi_19002	TAGCAATGATTACTCGCAGCTTGGACATGAACTCCCCACCAAAAGGCCACGTATGTCGCCATTTCGTATGTACAA-ATCTTCCATTCTCGC-----TTGTACAC----------TC---------GT-----------------------------------------CA-C-TCCTCATT----CC-CATCACATCTCCAC-------------A------------------------------------------TGTCGCTATCTGTGCCAG-------------------T----CGC--ACAGACG-TTGCCAT------------------------TG-ATTATTGCCGTTTACTTGCAGTACAGATACCGGAGCTGGAGGACTATGTTATCACGCAAATCGCATGCGGC
droMoj3	scaffold_6680:6803317-6803563 +		TAGCAATGATTACTCACAACTGGGACATGAGCTACCCACCAAAAGGCCACGTATGTCGCCATTTCGTATGTACAA-ATCTTCCATTCTCGT-----TGGTACAC----------TT---------GT-----------------------------------------CA----------------C--ACCTCATTCCCAT----------------CAC---AACT-----------------T-----C--CACATGTCGCTCTCT----------------GTG---T---------TAGCCTGATTG-CCGGTTGCCATTTATT---------------GCTCTTACGGCCGTTTACTTGCAGTACAGATACCGGAGCTGCAGGATTACGTGATTACGCAAATTGCTTGCGGT
droGri2	scaffold_15110:7556317-7556573 -		AAGCAATGATTATGCCCAACTGGGGCATGAGTTGTCCAGCAAAAGGCCACGTATGTCGCCATTTCGTATGTACAT-ATCTTCCATTCTCGTTTTGT----ACAC----------TG---------TC-----------------------------------------GT-TCTCCTCACCCCCTGC--ACCACATTGTCGC-------------ACA----------------------------------------TGTCGCATCCAGTCAAAT---CTGTTGCTA---T---------GCGTCTCATGT------CT-----------------CATTGTTTG-TTT-GCTTTGTTCGTTTGCAGTGCAGATACCAGAGCTGGTGGATTGTGTGATCACGCAAATCGCTTGCGGC

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droSim2

GAGCAATGACTACTCTCAACTGGGACACGATCTGCCCACCAAAAGGCCACGTATGTCGCCATTTCGTATGTAAT----CTTCATTTATCGTCTTGTCTGTCCAC----------TC---------TC-----------------------------------------CA-C----TAACT----CC--ACCTCATCTCCAA-------------ACTCAC---CAAC-----------------T-------A----------------CGCGAG---CTACTGCTG---TGAAC----CGAGTCTAAATC-CCGCAAT------------------------CATCTTCCGGCCGACTTTTTGCAGAGCTTATCCCCGAACTGCAGGATTACGTGATCATCCAGATCTCCTGTGGC	Size	Hit Count	Total Norm	Total	M023 Head	M024 Male-body	M025 Embryo	M053 Female-body	O001 Testis	O002 Head	SRR553485 Ovary	SRR553486 Ovary	SRR553487 Ovary	SRR553488 Ovary	SRR618934 Ovary	V044 Embryo	SRR902008 Ovary	SRR902009 Testis	SRR1275487 Male larvae	SRR1275485 Male prepupae	SRR1275483 Male prepupae
....AATGACTACTCTCAACTGGGG.........................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......TGACTACTCTCAACTGGGACACGATC..................................................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
........ACTACTCTCAACTGGGACACGATCTGCC..............................................................................................................................................................................................................................................................................................................................................................................................	28	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
....AATGACTACTCTCAACTGGGA.........................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droSec2

GAGCAATGACTACTCTCAACTGGGACACGATCTGCCCACCAAAAGGCCACGTATGTCGCCATTTCGTATGTAAT----CTTCATTTATCGTCTTGTCTGAACAC----------TC---------TC-----------------------------------------CA-C----TAACT----CC--ACCTCATCTCCAA-------------ACTCAC---CAAC-----------------T-------A----------------CGCGAG---CTACTGCTG---TGAAC----CGAGTCTAAATC-CCGCAAT------------------------CATCTTCCGGCCGACTTTTTGCAGAGCTTATCCCCGAACTGCAGGATTACGTGATCATCCAGATATCCTGTGGC	Size	Hit Count	Total Norm	Total	M054 Female-body	V113 Male-body	V114 Embryo	V115 Head
...........ACTCTCAACTGGGACACGATCTGCCCACC..........................................................................................................................................................................................................................................................................................................................................................................................	29	1	1.00	1	0	0	1	0

dm3

GAGCAACGACTACTCCCAGCTGGGCCACGATCTGCCCACCAAAAGGCCACGTATGTCGCCATTTCGTATGTAAT----CTTCATTTATCGTCTTGTCTGTCCAC----------TC---------TC-----------------------------------------CA-C----TAACT----CC--ACCTCATCTCCAT-------------ACTCAC---CAAC-----------------T-------A----------------CGCGAG---CCACTGCTG---TGAAC----CGAGTCTAAACC-CCGCAAT------------------------CATCTTCCGGCCGACTTTTTGCAGTGCTTATCCCCGAACTGCAGGATTACGTGATCATCCAGATCTGCTGCGGC	Size	Hit Count	Total Norm	Total	GSM154618 Ovary	GSM154620 Ovary	GSM154621 Ovary	GSM154622 Ovary	GSM180328 Head	GSM180329 Mixed-body	GSM180330 Embryo	GSM180331 Embryo	GSM180332 Embryo	GSM180333 Embryo	GSM180334 Larvae	GSM180335 Disc	GSM180336 Pupae	GSM180337 S2	GSM231091 Ovary	GSM239041 Head	GSM239050 Head	GSM239051 S2	GSM239052 S2	GSM246084 Head	GSM266765 S2	GSM280082 Ovary	GSM280083 Ovary	GSM280084 Ovary	GSM280085 Testis	GSM280086 Ovary	GSM280087 S2-NP	GSM280088 S2-NP	GSM312995 Head	GSM313160 Head	GSM313161 Head	GSM313162 Head	GSM313163 Head	GSM313164 Head	GSM313165 Head	GSM343287 Embryo	GSM379050 Ovary	GSM379051 Ovary	GSM379052 Ovary	GSM379053 Ovary	GSM379054 Ovary	GSM379055 Ovary	GSM379056 Ovary	GSM379057 Ovary	GSM379058 Ovary	GSM379059 Ovary	GSM379060 Ovary	GSM379061 Ovary	GSM379062 Ovary	GSM379063 Ovary	GSM379064 Ovary	GSM379065 Ovary	GSM379066 Ovary	GSM379067 Ovary	GSM424739 S2	GSM424740 S2	GSM424741 S2	GSM467729 Female-body	GSM467730 Female-body	GSM467731 Female-body	M002 CS	M003 Male-body	M004 Male-body	M005 ML-DmD32	M006 ML-DmD32	M029 OSC	M030 OSC	M031 OSC	M032 S2-R+	M033 S2-R+	M034 S2-R+	M035 S2-R+	M036 S2-R+	M037 S2-R+	M038 S2-R+	M039 S2-R+	M048 S2-R+	OSS2 OSS	OSS6 OSS	OSS7 OSS	OSS8 OSS	S1 Head	S10 Embryo	S11 Embryo	S12 Embryo	S13 Embryo	S14 Embryo	S15 S2-GMR	S16 Kc	S17 Larvae	S18 Larvae	S19 Pupae	S2 Head	S20 Pupae	S21 Disc	S22 Head	S23 Female-body	S24 Male-body	S25 Larvae	S26 Larvae	S27 Pupae	S28 Pupae	S29 Head	S3 Male-body	S30 S2-GMR	S31 S2	S32 S2	S33 Kc	S34 Kc	S35 Kc	S4 Female-body	S5 Disc	S6 Embryo	S7 Embryo	S8 S2	S9 Embryo	SRR001337 Head	SRR001338 Head	SRR001339 Head	SRR001340 Head	SRR001341 Head	SRR001342 Head	SRR001343 Head	SRR001344 Head	SRR001345 Head	SRR001346 Head	SRR001347 Head	SRR001348 Head	SRR001349 Head	SRR001664 Head	SRR010951 Ovary	SRR010952 Ovary	SRR010953 Ovary	SRR010954 Ovary	SRR010955 Ovary	SRR010956 Ovary	SRR010957 Ovary	SRR010958 Ovary	SRR010959 Ovary	SRR010960 Ovary	SRR014268 Embryo	SRR014269 Embryo	SRR014270 Embryo	SRR014271 Embryo	SRR014272 Embryo	SRR014273 Ovary	SRR014274 Ovary	SRR014275 Ovary	SRR014276 Ovary	SRR014277 Ovary	SRR014278 Ovary	SRR014279 Ovary	SRR014280 Ovary	SRR014281 Ovary	SRR014282 Ovary	SRR023197 S2	SRR023399 S2	SRR023400 S2	SRR023402 S2	SRR023407 S2	SRR029028 S2	SRR029029 S2	SRR029030 S2	SRR029031 S2	SRR029032 S2	SRR029033 S2	SRR029608 Head	SRR029633 Head	SRR030145 gb3	SRR031692 Head	SRR031693 Head	SRR031694 Head	SRR031696 Head	SRR031697 Head	SRR031698 Head	SRR031699 Head	SRR031700 Head	SRR031701 Head	SRR031702 Head	SRR031703 Head	SRR031704 Head	SRR032092 S2	SRR032093 S2	SRR032094 S2	SRR032095 S2-NP	SRR032096 S2-NP	SRR032152 Head	SRR060643 Testis	SRR060644 Ovary	SRR060645 Testis	SRR060646 Ovary	SRR060647 Ovary	SRR060648 Ovary	SRR060649 Ovary	SRR060650 Testis	SRR060651 Ovary	SRR060652 Testis	SRR060653 Ovary	SRR065151 Ovary	SRR065152 Ovary	SRR065153 Ovary	SRR065154 Ovary	SRR065155 Ovary	SRR065800 Ovary	SRR065801 Ovary	SRR065802 Ovary	SRR065803 Ovary	SRR065804 Ovary	SRR065805 Ovary	SRR065806 Ovary	SRR065807 Ovary	SRR097865 S2-NP	SRR097866 S2-NP	SRR097867 S2-NP	SRR298536 Ovary	SRR298537 Ovary	SRR298711 Ovary	SRR298712 Ovary	SRR317110 Ovary	SRR317111 Ovary	SRR317112 Ovary	SRR317113 Ovary	SRR317114 Ovary	SRR317115 Ovary	SRR317116 Ovary	SRR317117 Ovary	SRR341115 S2	SRR341116 S2	SRR341117 S2	SRR341118 S2	SRR351332 Mixed-body	SRR351333 Mixed-body	T004 OSC	T005 CME-L1	V001 Embryo	V002 Embryo	V003 S2	V006 Female-body	V007 Head	V008 S2	V009 CME-L1	V010 ML-DmD20-C5	V011 Sg4	V012 Male-body	V013 Head	V014 DTT	V015 DreRFHV	V018 Kc167	V019 GM2	V020 S2-R+	V021 ML-DmD21	V022 ML-DmD32	V023 Head	V024 Kc167	V025 S2-R+	V026 1182-2H	V027 ML-DmD21	V028 CME-W1-Cl.8+	V029 ML-DmD9	V030 ML-DmD8	V031 GM2	V032 S1	V033 CME-W1-Cl.8+	V034 ML-DmD16-C3	V035 ML-DmD32	V036 ML-DmD20-C5	V037 S2	V038 S2	V063 Ovary	V0632 Ovary	V064 Ovary	V0642 Ovary	V065 Ovary	V0652 Ovary	V066 Ovary	V0662 Ovary	V067 S2-NP	V073 mbn2	V074 S3	V075 ML-DmBG1-C1	V076 ML-DmBG3-C2	V077 Head	V078 Head	V079 Head	V080 Head	V081 Embryo	V082 Embryo	V083 Male-body	V084 Female-body	V085 CME-W2	V086 Female-body	V088 Ovary	V0882 Ovary	V089 Ovary	V0892 Ovary	V090 Male-body	V091 fGS/OSS	V092 Male-body	V093 Male-body	V094 S2-R+	V095 S2-R+	V096 Ovary	V097 Ovary	V098 Ovary	V125 ML-DmD9	V126 CME-L1	V127 G2	V128 S3	V129 ML-DmBG1-C1	V130 ML-DmBG3-C2	V131 ML-DmD16-C3	V132 ML-DmD32	V133 Sg4	V134 ML-DmD8	V135 CME-W2	V136 Male-body	V137 Head	V138 Male-body	V139 Female-body	V140 Female-body	V141 Female-body	V142 Female-body	V144 OSC	V145 S2	V146 S1	V147 1182-2H	V148 mbn2	GSM1528798 follicle cells
...........................................................................................................................................................................................................................................................................................................................................................................................GAACTGCAGGATTACGTGAT...................	20	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................TGCTTATCCCCGAACTGCAGGAT...........................	23	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................................TACGTGATCATCCAGATCTGCTGCGGC	27	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................TAAT----CTTCATTTATCGTCTTGTCTGTC.............................................................................................................................................................................................................................................................................................................................	27	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................GCTTATCCCCGAACTGCAGGATT..........................	23	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................CGAACTGCAGGATTACGTGATC..................	22	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............CCAGCTGGGCCACGATCTGCCC.............................................................................................................................................................................................................................................................................................................................................................................................	22	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................CGAACTGCAGGATTACGTGAT...................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
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................................TGCCCACCAAAAGGCCAC................................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................CATCTTCCGGCCGACTTTTTGCAGT.................................................	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................C---CAAC-----------------T-------A----------------CGCGAG---CCACTGC....................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................ATGTAAT----CTTCATTTATCGTC......................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................ATCTTCCGGCCGACTTTTTG.....................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................................TCATCCAGATCTGCTGCGG.	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0
.AGCAACGACTACTCCCAGCTG............................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................TGCAGGATTACGTGATCATCC..............	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droEre2

GAGCAACGACCACTCCCAACTGGGACACGATCTGCCCACCAAAAGGCCACGTATGTCGCCATTTCGTATGTAAT----CTTCATTTATCGTCTTGTCTATCCAC----------TG---------TC-----------------------------------------CA-C----TAACT----TC--ACCTCATCACCCA-------------ACTCAC---CAAC-----------------T-------T-------------------------CCACTGGTG---CGAAT----CGAGTCTAAATC-CCGCA---------------------------------CGGCCGACTTTTTGCAGTGCTTATCCCCGAACTGCAGGACTATGTGATCATCCAGATCTCCTGCGGC	Size	Hit Count	Total Norm	Total	M055 Female-body	M057 Embryo	V060 Head	V040 Embryo	V107 Male-body	V108 Head	GSM1528801 follicle cells
......................................................................................................................................................................................................................................................................................................................................................................................TCCCCGAACTGCAGGACTATGT......................	22	1	1.00	1	1	0	0	0	0	0	0
............................GATCTGCCCACCAAAAGGCCACT...............................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	1	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................................ATCATCCAGATCTCCTGCGGC	21	1	1.00	1	0	0	0	0	1	0	0

droYak3

GAGCAACGACCACTCCCAACTGGGACACGAACTGCCCACCAAAAGGCCACGTATGTCGCCATTTCGTATGTAAT----CTTCATTTATCGTCTTGTCTATCCAC----------TC---------TC-----------------------------------------CA-C----TAACT----CC--ACCTCATCACCAA-------------ACTCAC---CCAC-----------------T-------A-------------------------CCACTGGTG---TGAAT----CGAGTCTAAAAC-CCGCACT------------------------CATCTCCCGGCCGACTTTTTGCAGTGCTTATACCGGAGCTGCAAGATTACGTGGTCATCCAGATCTCCTGCGGC	Size	Hit Count	Total Norm	Total	M026 Head	M043 Female-body	M056 Embryo	V046 Embryo	V052 Head	V058 Head	V120 Male-body	SRR1275488 Male larvae	SRR1275486 Male prepupae	SRR1275484 Male prepupae	GSM1528802 follicle cells
...................................................................................................................................................................................................................................................................................................................................................................................TTATACCGGAGCTGCAAGAT...........................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
....................TGGGACACGAACTGCCCACC..........................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................ATACCGGAGCTGCAAGATTACGT......................	23	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0

droEug1

AAGCAATGACCACTCCCAACTGGGACACGAACTGCCCACCAAAAGGCCACGTATGTCGCCATTTCGTATGTAAT----CTTCATTAATCGACTTGTCTTTCCAC----------TC---------CC----------------------------------------------------------AC--ATCTCATCACCAA-------------AC-CAC---CAAC-----------------TTGTCT-TT----------------CATAAG---CGACTGCTG---TAAAC----GGATCCTAAGTC-CCGAACT------------------------CAATTCTATGGCGACTCTTTGCAGTGCTTATCCCGGAACTTCAAGACTATGTGGTCATCCAGATTGCCTGCGGC	Size	Hit Count	Total Norm	Total
No Reads

droBia1

GAGCAACGACCACTCCCAACTGGGACACGAACTGCCCACCAAAAGGCCACGTATGTCGCCATTTCGTATGTAAT----C-TCATTTATCGTCTTGTCTCTCCAC----------TA---------TC-----------------------------------------CA-C----TCACT----CC--ACCTCATCAACGC--------ATCACCTCAACCACCAA-------------------------AC----------------TGAAAA---TGTGTAACC--AA--------GGTGGCCGAATC-CCGGACT------------------------CACTCCTCTGCCGACTCTTTGCAGTGCTTATCCCCGAACTGCAGGACTACGTGGTCACCCAGATCGCCTGCGGC	Size	Hit Count	Total Norm	Total
No Reads

droTak1

CAGCAACGACCACTCCCAGCTGGGTCACGAACTGCCCACCAAAAGGCCACGTATGTCGCCATTTCGTATGTAAT----CTTCATTTATCGTCTTGTCTCTCCAC----------CC---------AC-----------------------------------------CA-C----TCACT----CCACACCTCATC---------------------CAC---CAAC-----------------G----------------------------------CACTGCTG---TCCACATGGAGCGCCTAAGGCACCGCACT------------------------CACTTCTCCGCCGACTCTTTGCAGTGCTCATCCCCGAACTGCAGGACTATGTGGTCATCCAGATCGCCTGCGGC	Size	Hit Count	Total Norm	Total
No Reads

droEle1

GAGCAACGACCACTCCCAACTGGGACACGAACTGCCCACCAAAAGGCCACGTATGTCGCCATTTCGTATGTAAT----CTTCATTTATCGTCTTGTCTCTCCAC----------TA---------TC-----------------------------------------CAAC----CTACT----CC--ACCTCATCACCAC----------------CAC---ATGC-----------------T-----C--CACAA------------ATGGGCCACCACTGCTG---TAAGC----CGAGGCTAAGTC-CCGGACT------------------------CAACCGTCTGCCTAATCTTTGCAGTGCTCATCCCCGAACTGCAGGACTATGTGGTCATCCAGATTGCGTGCGGC	Size	Hit Count	Total Norm	Total
No Reads

droRho1

GAGCAACGACCACTCGCAACTGGGACACGAACTGCCCACCAAAAGGCCACGTATGTCGCCATTTCGTATGTAAT----CTTCATTTATCGTCTTGTCTCTCCAT----------TG---------TC-----------------------------------------C-------TAACT----CC--ACCTCATCACCAC----------------CACCAACAAC-----------------TGCTAT-TC----------------AATGGG---CCACTGCTG---TAAAC----CGAGGCTAAATC-CCGGACT------------------------CACTCCTCTGCCGATTCTTTGCAGTGCTCATTCCCGAACTGCAGGACTATGTGGTCATCCAGATTGCTTGCGGC	Size	Hit Count	Total Norm	Total
No Reads

droFic1

CAGCAACGATCACTCACAACTGGGACATGAACTGCCCACCAAAAGGCCACGTATGTCGCCATTTCGTATGTAAA-----TTCATTTATCGTCTTGTCTCTCCAT----------TC---------TC-----------------------------------------C-------TAACG----CC--ATC-CATCACCAT-------------AC-CAC---CTGC-----------------T-------CCTC-------------CTTTGG---ACACTGCTG---TGATC----CGATGCTAAATC-CCGGACT------------------------CACTCCTCTACCGACTCATTGCAGTGCTTATCCCCGAACTTCAGGACTATGTGGTCATCCAGATTGCCTGCGGA	Size	Hit Count	Total Norm	Total
No Reads

droKik1

CAGCAATGACCACTCCCAGCTGGGTCACGACCTGCCCACCAAAAGGCCACGTATGTCGCCATTTCGTATGTACATAATCTTCATGTATCGTCTTGACTTTCCTT----------TC---------AC-----------------------------------------TA-C----TATCT----CC--ACCTCATCGTCAC-------------CGCCACCACCAA-----------------------------------------------------CACGGCTG---T-AAC----CGAGT------C-CC--ACT--------------------TACTTA--TCTCTGCGGACTCTTTGCAGTGCTTATCCCGGAGCTGCAGGACTATGTGATTATCCAGATTGCCTGCGGC	Size	Hit Count	Total Norm	Total
No Reads

droAna3

AAGCAACGATCACTCTCAGCTGGGACACGATCTGCCCACCAAAAGGCCACGTATGTCGCCATTTCGTATGTGGTC--TCTTCATATATCAGCTTGTCTTTTCTT----------TTTTTGTTTTCTCCTC--------------------------------------CA-------CCCT----CC--TTTTCATCACCAC----------------CAC---CTCT-----------------T-----C--CTC--------------ATGTATCACCACCGCTGTA-ATAAC----TAAGCCTACATT-CCAGACT------------------------CATCCTTTTGCCGCGTATTTACAGTGCTTATTCCTGAGCTGCTGGACTATGTGGTTGTTCAGATCGCGTGCGGC	Size	Hit Count	Total Norm	Total	M044 Female-body	M058 Embryo	V039 Embryo	V055 Head	V105 Male-body	V106 Head
...............................................................................................................................................................................................................................................................................................................................................................TTGCCGCGTATTTACAGTG................................................	19	1	1.00	1	1	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................TATTCCTGAGCTGCTGGACTATGTGGTT..................	28	1	1.00	1	1	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................TTATTCCTGAGCTGCTGGA............................	19	1	1.00	1	0	1	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................ACTATGTGGTTGTTCAGATCGC.......	22	1	1.00	1	0	0	0	0	1	0

droBip1

AAGCAACGATCACTCCCAACTGGGTCACGATTTGCCCACCAAAAGGCCACGTATGTCGCCATTTTGTATGTGATC--TCTTCATATATCGTCTTGTCTTTTCAT----------TT-TTGTTTTCTC-----------------------------------------CT-C----CAACCTCCTCC--TTTTCATCACCAC----------------------CTCT-----------------T-----C--CT--------------CATGGA---TCACCGCTGAA-AAAAC----TAAGCCTAAATA-CCACACT------------------------CATTCGTTTGCCCCATACTTACAGTGCTTATACCTGAGCTGCAGGACTATGTGATTATTCAGATCGCCTGTGGC	Size	Hit Count	Total Norm	Total
No Reads

dp5

AAACAACGATCACCACCAGCTTGGCCACGAGTTGCCCACCAAAAGGCCACGTATGTCGCCGTTTAGTATGTAAA----TTTCATTAATCGTGTTTTGT--ACTC----------TC--------------------------------------------------------------------------TTTCATCACTAAATATTCTA------TCCAT---CCAT-----------------G-------A----------------CTCGAA---GAACC-------------------------------GGCATCAAATGACTACCCATTCAACCACTCG-CTTCTTCTCGCTCTTTTTCAGTTCCGATACCTGAGCTGCAGGCCTATGTTGTCATCCAGATTGCCTGTGGC	Size	Hit Count	Total Norm	Total	M022 Male-body	M040 Female-body	M059 Embryo	M062 Head	V043 Embryo	V051 Head	V112 Male-body	SRR902010 Ovary	SRR902011 Testis	SRR902012 CNS imaginal disc
............................................................................................................................................................................................................................................................................................................................................................................TCAGTTCCGATACCTGAGCTGCAGG.............................	25	3	146.67	440	0	422	8	0	2	0	2	6	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................................TCATCCAGATTGCCTGTGG.	19	3	97.33	292	0	289	2	0	0	0	0	1	0	0
......CGATCACCACCAGCTTGGCCACGAG...................................................................................................................................................................................................................................................................................................................................................................................................	25	1	86.00	86	0	76	6	1	3	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................................TATGTTGTCATCCAGATTGCCTGTGG.	26	3	58.67	176	0	119	2	0	0	0	0	55	0	0
............................................................................................................................................................................................................................................................................................................................................................................TCAGTTCCGATACCTGAGCTGCAGGC............................	26	3	54.33	163	0	146	10	0	0	0	0	7	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................................TCATCCAGATTGCCTGTGGC	20	3	45.67	137	0	122	8	0	7	0	0	0	0	0
......CGATCACCACCAGCTTGGCCACGAGT..................................................................................................................................................................................................................................................................................................................................................................................................	26	1	43.00	43	0	38	5	0	0	0	0	0	0	0
......CGATCACCACCAGCTTGGCCACGA....................................................................................................................................................................................................................................................................................................................................................................................................	24	1	38.00	38	0	30	2	0	6	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................TCAGTTCCGATACCTGAGCTGCAG..............................	24	3	36.33	109	0	104	1	0	0	0	0	4	0	0
................................................................................TCATTAATCGTGTTTTGT--ACTC----------TC--------------------------------------------------------------------------TT..................................................................................................................................................................................................................................	26	2	30.50	61	0	57	0	0	0	0	1	3	0	0
...............................................................................TTCATTAATCGTGTTTTGT--ACTC----------TC--------------------------------------------------------------------------TT..................................................................................................................................................................................................................................	27	2	26.00	52	0	49	1	0	0	0	1	1	0	0
......CGATCACCACCAGCTTGGCCACAG....................................................................................................................................................................................................................................................................................................................................................................................................	24	1	25.00	25	0	23	1	0	1	0	0	0	0	0
......CGATCACCACCAGCTTGGCCACAGT...................................................................................................................................................................................................................................................................................................................................................................................................	25	1	22.00	22	0	17	3	0	2	0	0	0	0	0
....AACGATCACCACCAGCTTGGCCACGA....................................................................................................................................................................................................................................................................................................................................................................................................	26	1	21.00	21	0	19	1	0	1	0	0	0	0	0
....AACGATCACCACCAGCTTGGCCACAG....................................................................................................................................................................................................................................................................................................................................................................................................	26	1	20.00	20	0	19	1	0	0	0	0	0	0	0
......CGATCACCACCAGCTTGGCCAC......................................................................................................................................................................................................................................................................................................................................................................................................	22	1	19.00	19	0	9	6	0	3	0	0	1	0	0
............................................................................................................................................................................................................................................................................................................................................................................TCAGTTCCGATACCTGAGCTGCAGGCC...........................	27	3	18.00	54	0	45	7	0	0	0	0	2	0	0
....AACGATCACCACCAGCTTGGCCACGAG...................................................................................................................................................................................................................................................................................................................................................................................................	27	1	18.00	18	0	17	1	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................TTCAGTTCCGATACCTGAGCTGCAGG.............................	26	3	16.67	50	0	49	1	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................CAGTTCCGATACCTGAGCTGCAGG.............................	24	3	14.00	42	0	42	0	0	0	0	0	0	0	0
......CGATCACCACCAGCTTGGC.........................................................................................................................................................................................................................................................................................................................................................................................................	19	1	14.00	14	0	13	0	0	1	0	0	0	0	0
...............................................................................TTCATTAATCGTGTTTTGT--ACTC----------TC--------------------------------------------------------------------------T...................................................................................................................................................................................................................................	26	2	13.00	26	0	25	1	0	0	0	0	0	0	0
......CGATCACCACCAGCTTGGCCACG.....................................................................................................................................................................................................................................................................................................................................................................................................	23	1	12.00	12	0	10	0	0	2	0	0	0	0	0
....AACGATCACCACCAGCTTGGCCACG.....................................................................................................................................................................................................................................................................................................................................................................................................	25	1	11.00	11	0	8	1	0	2	0	0	0	0	0
....AACGATCACCACCAGCTTGGCC........................................................................................................................................................................................................................................................................................................................................................................................................	22	1	11.00	11	0	10	1	0	0	0	0	0	0	0
....AACGATCACCACCAGCTTGGCCACAGT...................................................................................................................................................................................................................................................................................................................................................................................................	27	1	11.00	11	0	11	0	0	0	0	0	0	0	0
....AACGATCACCACCAGCTTGGCCAC......................................................................................................................................................................................................................................................................................................................................................................................................	24	1	10.00	10	0	9	1	0	0	0	0	0	0	0
......CGATCACCACCAGCTTGGCCACA.....................................................................................................................................................................................................................................................................................................................................................................................................	23	1	9.00	9	0	7	1	0	1	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................................TCATCCAGATTGCCTGTGGA	20	3	8.67	26	0	26	0	0	0	0	0	0	0	0
....AACGATCACCACCAGCTTGGCCA.......................................................................................................................................................................................................................................................................................................................................................................................................	23	1	8.00	8	0	8	0	0	0	0	0	0	0	0
................................................................................TCATTAATCGTGTTTTGT--ACTC----------TC--------------------------------------------------------------------------T...................................................................................................................................................................................................................................	25	2	8.00	16	0	14	2	0	0	0	0	0	0	0
....................................................................................TAATCGTGTTTTGT--ACTC----------TC--------------------------------------------------------------------------TTTCA...............................................................................................................................................................................................................................	25	2	7.50	15	0	14	0	0	0	0	0	1	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................................TATGTTGTCATCCAGATTGCCTGTG..	25	3	7.00	21	0	21	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................................CATCCAGATTGCCTGTGG.	18	3	6.33	19	0	19	0	0	0	0	0	0	0	0
......CGATCACCACCAGCTTGGCC........................................................................................................................................................................................................................................................................................................................................................................................................	20	1	6.00	6	0	6	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................................CATCCAGATTGCCTGTGGC	19	3	6.00	18	0	18	0	0	0	0	0	0	0	0
...................................................................................TTAATCGTGTTTTGT--ACTC----------TC--------------------------------------------------------------------------TTTCA...............................................................................................................................................................................................................................	26	2	5.50	11	0	10	1	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................................TCATCCAGATTGCCTGTGGT	20	3	5.33	16	0	15	1	0	0	0	0	0	0	0
.......GATCACCACCAGCTTGGCCACGA....................................................................................................................................................................................................................................................................................................................................................................................................	23	1	5.00	5	0	5	0	0	0	0	0	0	0	0
....AACGATCACCACCAGCTTGGC.........................................................................................................................................................................................................................................................................................................................................................................................................	21	1	5.00	5	0	5	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................TCAGTTCCGATACCTGAGCTGCA...............................	23	3	5.00	15	0	15	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................TCAGTTCCGATACCTGAGCTG.................................	21	3	5.00	15	0	15	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................TTCAGTTCCGATACCTGAGCTGCAG..............................	25	3	4.67	14	0	13	1	0	0	0	0	0	0	0
...................................................................................TTAATCGTGTTTTGT--ACTC----------TC--------------------------------------------------------------------------TTTC................................................................................................................................................................................................................................	25	2	4.50	9	0	9	0	0	0	0	0	0	0	0
......CGATCACCACCAGCTTGGCCACGAGA..................................................................................................................................................................................................................................................................................................................................................................................................	26	1	4.00	4	0	4	0	0	0	0	0	0	0	0
..ACAACGATCACCACCAGCTTGGCCA.......................................................................................................................................................................................................................................................................................................................................................................................................	25	1	4.00	4	0	4	0	0	0	0	0	0	0	0
....AACGATCACCACCAGCTTGG..........................................................................................................................................................................................................................................................................................................................................................................................................	20	1	4.00	4	0	3	0	0	1	0	0	0	0	0
.......GATCACCACCAGCTTGGCCACGAGT..................................................................................................................................................................................................................................................................................................................................................................................................	25	1	4.00	4	0	4	0	0	0	0	0	0	0	0
.......GATCACCACCAGCTTGGCCACGAG...................................................................................................................................................................................................................................................................................................................................................................................................	24	1	4.00	4	0	4	0	0	0	0	0	0	0	0
...............................................................................TTCATTAATCGTGTTTTGT--ACTC----------TC--------------------------------------------------------------------------....................................................................................................................................................................................................................................	25	2	4.00	8	0	8	0	0	0	0	0	0	0	0
....AACGATCACCACCAGCTTGGCCACA.....................................................................................................................................................................................................................................................................................................................................................................................................	25	1	4.00	4	0	4	0	0	0	0	0	0	0	0
......CGATCACCACCAGCTTGGCCA.......................................................................................................................................................................................................................................................................................................................................................................................................	21	1	4.00	4	0	3	0	0	1	0	0	0	0	0
......CGATCACCACCAGCTTGGCCACAGC...................................................................................................................................................................................................................................................................................................................................................................................................	25	1	3.00	3	0	0	2	0	1	0	0	0	0	0
.......GATCACCACCAGCTTGGCCACAGT...................................................................................................................................................................................................................................................................................................................................................................................................	24	1	3.00	3	0	3	0	0	0	0	0	0	0	0
......CGATCACCACCAGCTTGGCCACGAGTT.................................................................................................................................................................................................................................................................................................................................................................................................	27	1	3.00	3	0	3	0	0	0	0	0	0	0	0
......CGATCACCACCAGCTTGG..........................................................................................................................................................................................................................................................................................................................................................................................................	18	1	3.00	3	0	3	0	0	0	0	0	0	0	0
......CGATCACCACCAGCTTGGA.........................................................................................................................................................................................................................................................................................................................................................................................................	19	1	3.00	3	0	3	0	0	0	0	0	0	0	0
..ACAACGATCACCACCAGCTTGGC.........................................................................................................................................................................................................................................................................................................................................................................................................	23	1	3.00	3	0	3	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................CAGTTCCGATACCTGAGCTGCAG..............................	23	3	3.00	9	0	9	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................................TATGTTGTCATCCAGATTGCCTG....	23	3	3.00	9	0	9	0	0	0	0	0	0	0	0
.................................................................................CATTAATCGTGTTTTGT--ACTC----------TC--------------------------------------------------------------------------T...................................................................................................................................................................................................................................	24	2	2.50	5	0	5	0	0	0	0	0	0	0	0
...................................................................................TTAATCGTGTTTTGT--ACTC----------TC--------------------------------------------------------------------------TTTCAA..............................................................................................................................................................................................................................	27	2	2.50	5	0	5	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................................................TGTCATCCAGATTGCCTGTGGC	22	3	2.33	7	0	7	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................................TATGTTGTCATCCAGATTGCCTGTGGC	27	3	2.33	7	0	6	1	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................................TTGTCATCCAGATTGCCTGTGG.	22	3	2.33	7	0	7	0	0	0	0	0	0	0	0
..ACAACGATCACCACCAGCTTGGCCACAG....................................................................................................................................................................................................................................................................................................................................................................................................	28	1	2.00	2	0	2	0	0	0	0	0	0	0	0
..ACAACGATCACCACCAGCTTGGCCACGA....................................................................................................................................................................................................................................................................................................................................................................................................	28	1	2.00	2	0	2	0	0	0	0	0	0	0	0
.....ACGATCACCACCAGCTTGGCCA.......................................................................................................................................................................................................................................................................................................................................................................................................	22	1	2.00	2	0	2	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................CAGTTCCGATACCTGAGCTGCA...............................	22	3	2.00	6	0	6	0	0	0	0	0	0	0	0
...CAACGATCACCACCAGCTTGGCC........................................................................................................................................................................................................................................................................................................................................................................................................	23	1	2.00	2	0	2	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................................................TGTCATCCAGATTGCCTGTGG.	21	3	2.00	6	0	5	0	0	0	0	0	1	0	0
......CGATCACCACCAGCTTGGCCACGAAAA.................................................................................................................................................................................................................................................................................................................................................................................................	27	1	2.00	2	0	2	0	0	0	0	0	0	0	0
......CGATCACCACCAGCTTGGT.........................................................................................................................................................................................................................................................................................................................................................................................................	19	1	2.00	2	0	1	1	0	0	0	0	0	0	0
......CGATCACCACCAGCTTGGCCACGAGAA.................................................................................................................................................................................................................................................................................................................................................................................................	27	1	2.00	2	0	1	0	0	0	0	0	1	0	0
..ACAACGATCACCACCAGCTTGG..........................................................................................................................................................................................................................................................................................................................................................................................................	22	1	2.00	2	0	2	0	0	0	0	0	0	0	0
....AACGATCACCACCAGCTTGGCCACAGC...................................................................................................................................................................................................................................................................................................................................................................................................	27	1	2.00	2	0	1	1	0	0	0	0	0	0	0
....AACGATCACCACCAGCTTGGCCACGAGT..................................................................................................................................................................................................................................................................................................................................................................................................	28	1	2.00	2	0	2	0	0	0	0	0	0	0	0
.....ACGATCACCACCAGCTTGGCCACGA....................................................................................................................................................................................................................................................................................................................................................................................................	25	1	2.00	2	0	2	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................TTCAGTTCCGATACCTGAGCTGCAGGC............................	27	3	2.00	6	0	6	0	0	0	0	0	0	0	0
.......GATCACCACCAGCTTGGCCACAG....................................................................................................................................................................................................................................................................................................................................................................................................	23	1	2.00	2	0	2	0	0	0	0	0	0	0	0
.......GATCACCACCAGCTTGGCCAC......................................................................................................................................................................................................................................................................................................................................................................................................	21	1	2.00	2	0	1	1	0	0	0	0	0	0	0
...CAACGATCACCACCAGCTTGGCCACA.....................................................................................................................................................................................................................................................................................................................................................................................................	26	1	2.00	2	0	2	0	0	0	0	0	0	0	0
......CGATCACCACCAGCTTGGCCACGAA...................................................................................................................................................................................................................................................................................................................................................................................................	25	1	2.00	2	0	1	1	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................TTCAGTTCCGATACCTGAGCTGCA...............................	24	3	1.67	5	0	5	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................TTTCAGTTCCGATACCTGAGCTG.................................	23	3	1.67	5	0	5	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................................TATGTTGTCATCCAGATTGCCTGT...	24	3	1.67	5	0	4	0	0	1	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................................TGTTGTCATCCAGATTGCCTGTGG.	24	3	1.67	5	0	3	0	0	0	0	0	2	0	0
.............................................................................................................................................................................................................................................................................................................................................................................CAGTTCCGATACCTGAGCTGCAGGC............................	25	3	1.67	5	0	4	0	0	0	0	0	1	0	0
.................................................................................CATTAATCGTGTTTTGT--ACTC----------TC--------------------------------------------------------------------------TT..................................................................................................................................................................................................................................	25	2	1.50	3	0	3	0	0	0	0	0	0	0	0
................................................................................TCATTAATCGTGTTTTGT--ACTC----------TC--------------------------------------------------------------------------....................................................................................................................................................................................................................................	24	2	1.50	3	0	2	1	0	0	0	0	0	0	0
...............................................................................TTCATTAATCGTGTTTTGT--ACTC----------T...............................................................................................................................................................................................................................................................................................................	24	2	1.50	3	0	3	0	0	0	0	0	0	0	0
....................................................................................TAATCGTGTTTTGT--ACTC----------TC--------------------------------------------------------------------------TTTC................................................................................................................................................................................................................................	24	2	1.50	3	0	2	1	0	0	0	0	0	0	0
...................................................................................TTAATCGTGTTTTGT--ACTC----------TC--------------------------------------------------------------------------TT..................................................................................................................................................................................................................................	23	2	1.50	3	0	3	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................TTCAGTTCCGATACCTGAGCTGCAGGCC...........................	28	3	1.33	4	0	3	1	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................AGTTCCGATACCTGAGCTGCAG..............................	22	3	1.33	4	0	4	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................TCAGTTCCGATACCTGAGCTGCAGGCCT..........................	28	3	1.33	4	0	4	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................ATGTTGTCATCCAGATTGCCTGTGG.	25	3	1.33	4	0	4	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................TCAGTTCCGATACCTGAGCTGCAGT.............................	25	3	1.00	3	0	3	0	0	0	0	0	0	0	0
......CGATCACCACCAGCTTGGCA........................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.........TCACCACCAGCTTGGCCAC......................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..........CACCACCAGCTTGGCCACGA....................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0
......CGATCACCACCAGCTTGGCCACGAGC..................................................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	1	0	0	0	0	0	0	0
.....ACGATCACCACCAGCTTGGCCACA.....................................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	1	0	0	0	0	0	0	0	0
....................................................................................TAATCGTGTTTTGT--ACTC----------TC--------------------------------------------------------------------------TTTCAA..............................................................................................................................................................................................................................	26	2	1.00	2	0	2	0	0	0	0	0	0	0	0
..ACAACGATCACCACCAGCTTGGCCACAGT...................................................................................................................................................................................................................................................................................................................................................................................................	29	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.......GATCACCACCAGCTTGGCCACGAGA..................................................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.......GATCACCACCAGCTTGGCCACG.....................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0
......CGATCACCACCAGCTTGGCCATT.....................................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	1	0	0	0	0	0	0	0	0
....................TTGGCCACGAGTTGCCCACCAAAAGG....................................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.........TCACCACCAGCTTGGCCACG.....................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	1	0	0	0	0	0
....AACGATCACCACCAGCTTGGCCT.......................................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.....ACGATCACCACCAGCTTGGCCACG.....................................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................................TCATCCAGATTGCCTGTGA.	19	3	1.00	3	0	3	0	0	0	0	0	0	0	0
.............................................................................................TTTGT--ACTC----------TC--------------------------------------------------------------------------TTTCATCACTA.........................................................................................................................................................................................................................	22	3	1.00	3	0	1	0	0	0	0	0	2	0	0
.............................................................................................................................................................................................................................................................................................................................................................................CAGTTCCGATACCTGAGCTGCAGGCC...........................	26	3	1.00	3	0	3	0	0	0	0	0	0	0	0
.....ACGATCACCACCAGCTTGGCCACAG....................................................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	1	0	0	0	0	0	0	0	0
........ATCACCACCAGCTTGGCCA.......................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..ACAACGATCACCACCAGCTTGGCCAC......................................................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...........ACCACCAGCTTGGCCACGAG...................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	1	0	0	0	0	0	0	0
.......GATCACCACCAGCTTGGCC........................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0
......CGATCACCACCAGCTTGGCCACGT....................................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..........CACCACCAGCTTGGCCACAG....................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................TCAGTTCCGATACCTGAGCTGCAGGCA...........................	27	3	1.00	3	0	3	0	0	0	0	0	0	0	0
...CAACGATCACCACCAGCTTGGCCACGA....................................................................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	1	0	0	0	0	0	0	0	0
AAACAACGATCACCACCAGCTTG...........................................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................TCGCTCTTTTTCAGTTCCGATACC........................................	24	3	1.00	3	0	3	0	0	0	0	0	0	0	0
............CCACCAGCTTGGCCACGAGTTG................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................TTTCAGTTCCGATACCTGAGCTGCAG..............................	26	3	1.00	3	0	2	0	0	0	0	0	1	0	0
...............................................................................TTCATTAATCGTGTTTTGT--ACTC----------................................................................................................................................................................................................................................................................................................................	23	2	1.00	2	0	1	0	0	0	0	0	1	0	0
.....ACGATCACCACCAGCTTGGCCACGAG...................................................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	1	0	0	0	0	0	0	0	0
....AACGATCACCACCAGCTTGGCCACGAA...................................................................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.........TCACCACCAGCTTGGCCACGAGT..................................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.....ACGATCACCACCAGCTTGGCCACGAC...................................................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	1	0	0	0	0	0	0	0
AAACAACGATCACCACCAGCTTGGCA........................................................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	1	0	0	0	0	0
.....................TGGCCACGAGTTGCCCACCAAAAGG....................................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	1	0	0	0	0	0	0	0	0
AAACAACGATCACCACCAGCTTGGC.........................................................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	1	0	0	0	0	0	0	0	0
......CGATCACCACCAGCTTGGCCACGG....................................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	1	0	0	0	0	0
.....ACGATCACCACCAGCTTGGCCACAGT...................................................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	1	0	0	0	0	0	0	0	0
....AACGATCACCACCAGCTTGGCCACGAGA..................................................................................................................................................................................................................................................................................................................................................................................................	28	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..ACAACGATCACCACCAGCTTGGCCACA.....................................................................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................................TATGTTGTCATCCAGATTGCCTGTGGA	27	3	1.00	3	0	3	0	0	0	0	0	0	0	0
....AACGATCACCACCAGCTTGGCCACGAAA..................................................................................................................................................................................................................................................................................................................................................................................................	28	1	1.00	1	0	1	0	0	0	0	0	0	0	0
....AACGATCACCACCAGCTTGGG.........................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	1	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................................TACCTGAGCTGCAGGCCTATGTTG....................	24	3	1.00	3	0	3	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................TCAGTTCCGATACCTGAGCTGC................................	22	3	1.00	3	0	2	1	0	0	0	0	0	0	0
......CGATCACCACCAGCTTGGCCACGC....................................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	1	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................TCAGTTCCGATACCTGAGCT..................................	20	3	1.00	3	0	2	1	0	0	0	0	0	0	0
..........CACCACCAGCTTGGCCAC......................................................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...CAACGATCACCACCAGCTTGGC.........................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0
......CGATCACCACCAGCTTGGCCACGAGTA.................................................................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	1	0	0	0	0	0	0	0
................................................................................TCATTAATCGTGTTTTGT--ACTC----------T...............................................................................................................................................................................................................................................................................................................	23	2	1.00	2	0	2	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................................TCATCCAGATTGCCTGTGAA	20	4	0.75	3	0	3	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................ATGTTGTCATCCAGATTGCCTG....	22	3	0.67	2	0	2	0	0	0	0	0	0	0	0
.....................................................................................AATCGTGTTTTGT--ACTC----------TC--------------------------------------------------------------------------TTTCA...............................................................................................................................................................................................................................	24	3	0.67	2	0	2	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................................TTGTCATCCAGATTGCCTGTGGC	23	3	0.67	2	0	2	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................TTTCAGTTCCGATACCTGAGCTGCA...............................	25	3	0.67	2	0	2	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................AGTTCCGATACCTGAGCTGCAGG.............................	23	3	0.67	2	0	2	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................................TATGTTGTCATCCAGATTGCCTGTGGT	27	3	0.67	2	0	2	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................................................TGTCATCCAGATTGCCTGTG..	20	3	0.67	2	0	2	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................TCTCGCTCTTTTTCAGTTCCGATACC........................................	26	3	0.67	2	0	2	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................TTTCAGTTCCGATACCTGAGCTGCAGG.............................	27	3	0.67	2	0	0	0	0	0	0	0	2	0	0
...........................................................................................................................................................................................................................................................................................................................................................................TTCAGTTCCGATACCTGAGCTG.................................	22	3	0.67	2	0	2	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................TCAGTTCCGATACCTGAGC...................................	19	3	0.67	2	0	2	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................TCAGTTCCGATACCTGAGCTGCAGGT............................	26	3	0.67	2	0	2	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................TTTCAGTTCCGATACCTGAGCTGC................................	24	3	0.67	2	0	1	1	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................TCAGTTCCGATACCTGAGCTGCAGA.............................	25	3	0.67	2	0	2	0	0	0	0	0	0	0	0
.......................................................................................TCGTGTTTTGT--ACTC----------TC--------------------------------------------------------------------------TTTCA...............................................................................................................................................................................................................................	22	3	0.67	2	0	2	0	0	0	0	0	0	0	0
....................................................................................TAATCGTGTTTTGT--ACTC----------TC--------------------------------------------------------------------------....................................................................................................................................................................................................................................	20	2	0.50	1	0	0	1	0	0	0	0	0	0	0
................................................................................TCATTAATCGTGTTTTGT--ACTC----------TC--------------------------------------------------------------------------TA..................................................................................................................................................................................................................................	26	2	0.50	1	0	1	0	0	0	0	0	0	0	0
...................................................................................TTAATCGTGTTTTGT--ACTC----------TC--------------------------------------------------------------------------TTT.................................................................................................................................................................................................................................	24	2	0.50	1	0	1	0	0	0	0	0	0	0	0
....................................................................................TAATCGTGTTTTGT--ACTC----------TC--------------------------------------------------------------------------TA..................................................................................................................................................................................................................................	22	2	0.50	1	0	0	0	0	0	0	0	1	0	0
...............................................................................TTCATTAATCGTGTTTTGT--ACTC----------TC--------------------------------------------------------------------------TTT.................................................................................................................................................................................................................................	28	2	0.50	1	0	1	0	0	0	0	0	0	0	0
................................................................................TCATTAATCGTGTTTTGT--ACT...........................................................................................................................................................................................................................................................................................................................	21	2	0.50	1	0	0	1	0	0	0	0	0	0	0
................................................................................TCATTAATCGTGTTTTGT--ACTC----------TC--------------------------------------------------------------------------C...................................................................................................................................................................................................................................	25	2	0.50	1	0	0	1	0	0	0	0	0	0	0
....................................................................................TAATCGTGTTTTGT--ACTC----------TC--------------------------------------------------------------------------TTTGG...............................................................................................................................................................................................................................	25	2	0.50	1	0	1	0	0	0	0	0	0	0	0
....................................................................................TAATCGTGTTTTGT--ACTC----------TC--------------------------------------------------------------------------TTTCATC.............................................................................................................................................................................................................................	27	2	0.50	1	0	0	1	0	0	0	0	0	0	0
....................................................................................TAATCGTGTTTTGT--ACTC----------TC--------------------------------------------------------------------------TTTCATCAC...........................................................................................................................................................................................................................	29	2	0.50	1	0	1	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................TCTTCTCGCTCTTTTTCAGTTCCGATACC........................................	29	2	0.50	1	0	1	0	0	0	0	0	0	0	0
..............................................................................TTTCATTAATCGTGTTTTGT--ACTC----------................................................................................................................................................................................................................................................................................................................	24	2	0.50	1	0	1	0	0	0	0	0	0	0	0
..............................................................................TTTCATTAATCGTGTTTTGT--ACTC----------TC--------------------------------------------------------------------------T...................................................................................................................................................................................................................................	27	2	0.50	1	0	0	0	0	0	0	0	1	0	0
...................................................................................TTAATCGTGTTTTGT--ACTC----------TC--------------------------------------------------------------------------T...................................................................................................................................................................................................................................	22	2	0.50	1	0	1	0	0	0	0	0	0	0	0
...................................................................................TTAATCGTGTTTTGT--ACTC----------TC--------------------------------------------------------------------------TTTCAT..............................................................................................................................................................................................................................	27	2	0.50	1	0	1	0	0	0	0	0	0	0	0
................................................................................TCATTAATCGTGTTTTGT--ACTC----------TC--------------------------------------------------------------------------TTTC................................................................................................................................................................................................................................	28	2	0.50	1	0	1	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................TCCGATACCTGAGCTGCAGGCC...........................	22	3	0.33	1	0	1	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................................TATGTTGTCATCCAGATTGCCTGTA..	25	3	0.33	1	0	1	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................TTCCGATACCTGAGCTGCAGGCCTATG.......................	27	3	0.33	1	0	1	0	0	0	0	0	0	0	0
................................................................................................................................................................................................TCATCACTAAATATTCTA------TCCAT---CCA...............................................................................................................................................................................................	26	3	0.33	1	0	1	0	0	0	0	0	0	0	0
.........................................................................................GTGTTTTGT--ACTC----------TC--------------------------------------------------------------------------TTTCATCAC...........................................................................................................................................................................................................................	24	3	0.33	1	0	1	0	0	0	0	0	0	0	0

droPer2

AAACAACGATCACCACCAGCTTGGCCACGAGTTGCCCACCAAAAGGCCACGTATGTCGCCGTTTAGTATGTAAA----TTTCATTAATCGTGTTTTGT--ACTC----------TC--------------------------------------------------------------------------TTTCATCACTAAATATTCTA------TCCAT---CCAT-----------------G-------A----------------CTCGAA---GAACC-------------------------------GGCATCAAATGACTACCCATTCAACCGCTCG-CTTCTTCTCGCTCTTTTTCAGTTCCGATACCTGAGCTGCAGGCCTATGTTGTCATCCAGATTGCCTGTGGC	Size	Hit Count	Total Norm	Total	M021 Embryo	M042 Female-body	V042 Embryo	V050 Head	V057 Head	V111 Male-body
...........................................................................................................................................................................................................................................................................................................................................................................TTCAGTTCCGATACCTGAGCTGCAGG.............................	26	2	29.00	58	0	58	0	0	0	0
....AACGATCACCACCAGCTTGGCCACGA....................................................................................................................................................................................................................................................................................................................................................................................................	26	2	12.00	24	0	22	2	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................TTCAGTTCCGATACCTGAGCTGCAG..............................	25	2	10.50	21	0	21	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................................TATGTTGTCATCCAGATTGCCTGTGG.	26	2	8.00	16	0	16	0	0	0	0
....AACGATCACCACCAGCTTGGCCACG.....................................................................................................................................................................................................................................................................................................................................................................................................	25	2	6.50	13	0	12	1	0	0	0
...............................................................................TTCATTAATCGTGTTTTGT--ACTC----------TC--------------------------------------------------------------------------TT..................................................................................................................................................................................................................................	27	2	5.50	11	0	11	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................TCAGTTCCGATACCTGAGCTGCAGG.............................	25	2	4.50	9	0	9	0	0	0	0
..ACAACGATCACCACCAGCTTGGCCA.......................................................................................................................................................................................................................................................................................................................................................................................................	25	2	4.50	9	0	9	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................TTCAGTTCCGATACCTGAGCTGCAGGC............................	27	2	4.00	8	0	8	0	0	0	0
................................................................................TCATTAATCGTGTTTTGT--ACTC----------TC--------------------------------------------------------------------------TT..................................................................................................................................................................................................................................	26	2	3.50	7	0	7	0	0	0	0
....AACGATCACCACCAGCTTGGCCA.......................................................................................................................................................................................................................................................................................................................................................................................................	23	2	3.50	7	0	6	1	0	0	0
....AACGATCACCACCAGCTTGGCCACGAG...................................................................................................................................................................................................................................................................................................................................................................................................	27	2	3.00	6	0	6	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................TTCAGTTCCGATACCTGAGCTGCA...............................	24	2	3.00	6	0	6	0	0	0	0
....AACGATCACCACCAGCTTGGCCACGAGT..................................................................................................................................................................................................................................................................................................................................................................................................	28	2	2.50	5	0	5	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................................TATGTTGTCATCCAGATTGCCTGTGGC	27	2	2.50	5	1	4	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................TTTCAGTTCCGATACCTGAGCTGCAGG.............................	27	2	2.50	5	0	5	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................TTTCAGTTCCGATACCTGAGCTGCAG..............................	26	2	2.50	5	0	5	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................TTCAGTTCCGATACCTGAGCTG.................................	22	2	2.00	4	0	4	0	0	0	0
....AACGATCACCACCAGCTTGGCC........................................................................................................................................................................................................................................................................................................................................................................................................	22	2	2.00	4	0	4	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................TTCAGTTCCGATACCTGAGCT..................................	21	2	1.50	3	0	3	0	0	0	0
....AACGATCACCACCAGCTTGG..........................................................................................................................................................................................................................................................................................................................................................................................................	20	2	1.50	3	0	3	0	0	0	0
....AACGATCACCACCAGCTTGGCCAC......................................................................................................................................................................................................................................................................................................................................................................................................	24	2	1.50	3	0	3	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................TTCAGTTCCGATACCTGAGCTGCAGGCC...........................	28	2	1.50	3	0	3	0	0	0	0
...............................................................................TTCATTAATCGTGTTTTGT--ACTC----------TC--------------------------------------------------------------------------T...................................................................................................................................................................................................................................	26	2	1.50	3	0	3	0	0	0	0
................................TGCCCACCAAAAGGCCACGTATGTCGC.......................................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	1	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................................TATGTTGTCATCCAGATTGCCTG....	23	2	1.00	2	0	2	0	0	0	0
..ACAACGATCACCACCAGCTTGGCCACGA....................................................................................................................................................................................................................................................................................................................................................................................................	28	2	1.00	2	0	2	0	0	0	0
................................................................................TCATTAATCGTGTTTTGT--ACTC----------TC--------------------------------------------------------------------------T...................................................................................................................................................................................................................................	25	2	1.00	2	0	1	1	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................TTTCAGTTCCGATACCTGAGCTGCA...............................	25	2	1.00	2	0	2	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................TGCAGGCCTATGTTGTCATCCAGA...........	24	2	1.00	2	0	2	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................ATGTTGTCATCCAGATTGCCTGTGG.	25	2	1.00	2	0	2	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................TCAGTTCCGATACCTGAGCTGCAGGC............................	26	2	1.00	2	0	2	0	0	0	0
...............................................................................TTCATTAATCGTGTTTTGT--ACTC----------................................................................................................................................................................................................................................................................................................................	23	2	1.00	2	0	2	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................TCAGTTCCGATACCTGAGCTGCAG..............................	24	2	1.00	2	0	2	0	0	0	0
................................TGCCCACCAAAAGGCCACGTATGTCG........................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	1	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................................CATCCAGATTGCCTGTGGC	19	2	1.00	2	2	0	0	0	0	0
..........CACCACCAGCTTGGCCACGAGT..................................................................................................................................................................................................................................................................................................................................................................................................	22	2	0.50	1	0	1	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................TGCAGGCCTATGTTGTCATCCAGAT..........	25	2	0.50	1	0	1	0	0	0	0
.........TCACCACCAGCTTGGCCACGAG...................................................................................................................................................................................................................................................................................................................................................................................................	22	2	0.50	1	0	1	0	0	0	0
..ACAACGATCACCACCAGCTTGGC.........................................................................................................................................................................................................................................................................................................................................................................................................	23	2	0.50	1	0	1	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................................TATGTTGTCATCCAGATTGC.......	20	2	0.50	1	0	0	1	0	0	0
...CAACGATCACCACCAGCTTGGCCAA......................................................................................................................................................................................................................................................................................................................................................................................................	25	2	0.50	1	0	1	0	0	0	0
.....ACGATCACCACCAGCTTGGCCACG.....................................................................................................................................................................................................................................................................................................................................................................................................	24	2	0.50	1	0	1	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................TTCAGTTCCGATACCTGAGCTGCAGGCT...........................	28	2	0.50	1	0	1	0	0	0	0
...............................................................................TTCATTAATCGTGTTTTGT--ACTC----------TC--------------------------------------------------------------------------....................................................................................................................................................................................................................................	25	2	0.50	1	0	1	0	0	0	0
...................................................................................................................................................................................................TCACTAAATATTCTA------TCCAT---CCA...............................................................................................................................................................................................	23	2	0.50	1	0	1	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................TCAGTTCCGATACCTGAGCTGCAGGCC...........................	27	2	0.50	1	0	1	0	0	0	0
...........................................................................................................................................................................................................................................................................................C-------------------------------GGCATCAAATGACTACCCATTCAACCA............................................................................	28	2	0.50	1	0	1	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................CCTATGTTGTCATCCAGATTGCCTG....	25	2	0.50	1	0	1	0	0	0	0
........................................................................AA----TTTCATTAATCGTGTTTTGT--ACTC----------................................................................................................................................................................................................................................................................................................................	26	2	0.50	1	0	1	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................TCAAATGACTACCCATTCAACCG............................................................................	23	2	0.50	1	0	1	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................TCTCGCTCTTTTTCAGTTCCG.............................................	21	2	0.50	1	0	1	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................TCAGTTCCGATACCTGAGCTGCAGT.............................	25	2	0.50	1	0	1	0	0	0	0
.........TCACCACCAGCTTGGCCACGAGTTGC...............................................................................................................................................................................................................................................................................................................................................................................................	26	2	0.50	1	0	1	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................TTCAGTTCCGATACCTGAGCTGCAGGCA...........................	28	2	0.50	1	0	1	0	0	0	0
....AACGATCACCACCAGCTTGGC.........................................................................................................................................................................................................................................................................................................................................................................................................	21	2	0.50	1	0	1	0	0	0	0
....................................................................................TAATCGTGTTTTGT--ACTC----------TC--------------------------------------------------------------------------TTTCA...............................................................................................................................................................................................................................	25	2	0.50	1	0	1	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................CAGTTCCGATACCTGAGCTGC................................	21	2	0.50	1	0	1	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................................TATGTTGTCATCCAGATTGCCTGTGA.	26	2	0.50	1	0	1	0	0	0	0
.....ACGATCACCACCAGCTTGGCCACGAG...................................................................................................................................................................................................................................................................................................................................................................................................	26	2	0.50	1	0	1	0	0	0	0
..ACAACGATCACCACCAGCTTGGCCAC......................................................................................................................................................................................................................................................................................................................................................................................................	26	2	0.50	1	0	1	0	0	0	0
....AACGATCACCACCAGCTTGGCCACGAT...................................................................................................................................................................................................................................................................................................................................................................................................	27	2	0.50	1	0	1	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................................................TGTCATCCAGATTGCCTGTGGC	22	2	0.50	1	0	1	0	0	0	0
.....ACGATCACCACCAGCTTGGCCA.......................................................................................................................................................................................................................................................................................................................................................................................................	22	2	0.50	1	0	1	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................CTTCTCGCTCTTTTTCAGTTCCGATAC.........................................	27	2	0.50	1	0	1	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................TTCAGTTCCGATACCTGAGC...................................	20	2	0.50	1	0	1	0	0	0	0
...............................................................................TTCATTAATCGTGTTTTGT--ACTC----------TC--------------------------------------------------------------------------TTT.................................................................................................................................................................................................................................	28	2	0.50	1	0	1	0	0	0	0
.....ACGATCACCACCAGCTTG...........................................................................................................................................................................................................................................................................................................................................................................................................	18	2	0.50	1	0	1	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................TGAGCTGCAGGCCTATGTTGTCAT................	24	2	0.50	1	0	1	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................TTTTTCAGTTCCGATACCTGAGCTG.................................	25	2	0.50	1	0	1	0	0	0	0
..................................................................................................................................................................................................................................................................................AA---GAACC-------------------------------GGCATCAAATGACTACCC.....................................................................................	25	2	0.50	1	0	1	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................................TATGTTGTCATCCAGATTGCCTGTGT.	26	2	0.50	1	0	1	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................TTCAGTTCCGATACCTGAGCTGC................................	23	2	0.50	1	0	1	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................................TATGTTGTCATCCAGATTGCCTGTG..	25	2	0.50	1	0	1	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................TTTCAGTTCCGATACCTGAGCTGC................................	24	2	0.50	1	0	1	0	0	0	0
........................................................................AA----TTTCATTAATCGTGTTTTGT--ACT...........................................................................................................................................................................................................................................................................................................................	25	2	0.50	1	0	1	0	0	0	0
........................................................................AA----TTTCATTAATCGTGTTTTGT--AC............................................................................................................................................................................................................................................................................................................................	24	2	0.50	1	0	1	0	0	0	0
......CGATCACCACCAGCTTGGCCACGAG...................................................................................................................................................................................................................................................................................................................................................................................................	25	2	0.50	1	0	1	0	0	0	0
........................................................................................................................................................................................................................................................................................AACC-------------------------------GGCATCAAATGACTACCCAT...................................................................................	24	2	0.50	1	0	1	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................................TGTTGTCATCCAGATTGCCTGTGG.	24	2	0.50	1	0	1	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................ATGTTGTCATCCAGATTGCCTGTG..	24	2	0.50	1	0	1	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................TCAGTTCCGATACCTGAGCTGC................................	22	2	0.50	1	0	1	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................................TATGTTGTCATCCAGATTGCCTGT...	24	2	0.50	1	0	1	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................CTCGCTCTTTTTCAGTTCCGATAC.........................................	24	2	0.50	1	0	1	0	0	0	0
................................................................................................................................................................................................TCATCACTAAATATTCTA------TCCAT---CCA...............................................................................................................................................................................................	26	2	0.50	1	0	1	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................................GCCTATGTTGTCATCCAGATTGCCTG....	26	2	0.50	1	0	1	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................................................TGTCATCCAGATTGCCTGTGG.	21	2	0.50	1	0	1	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................TTCTCGCTCTTTTTCAGTTCCGATAC.........................................	26	2	0.50	1	0	1	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................................TCATCCAGATTGCCTGTGAA	20	3	0.33	1	0	1	0	0	0	0

droWil2

CAACAATGATCAGGCCCAGCTGGGACATAATTTGCCAACTAAAAGGCCACGTATGTCGCCATTTCGTATGTAAT-----TCCATATGTCGTATCGTCTATTTTCCCCACTTCTTTTTCTGTCTCCATCTCTTTGTTCTTCTTTTGTCATTAACCACCACTTCTACTACTA-C----TACCA----CC--AC--CATCACCAC-------------CATCAC---CATCGCTACACTCCACTTCTCTGTCAT-TC----------------AGCAAA---TGCTTGGTG---GGAGT----TGACACTCTGGC-CTGACAT------------------------AAT------CTTAATCCTTTCCAGTCTTAATACCCGAGCTCCAGAACTATGTGGTGGTTGCTATAGCTTGTGGC	Size	Hit Count	Total Norm	Total	M020 Head	M045 Female-body	V117 Male-body	V118 Embryo	V119 Head
No Reads

droVir3

TAGCAATGATTACTCGCAGCTTGGACATGAACTCCCCACCAAAAGGCCACGTATGTCGCCATTTCGTATGTACAA-ATCTTCCATTCTCGC-----TTGTACAC----------TC---------GT-----------------------------------------CA-C-TCCTCATT----CC-CATCACATCTCCAC-------------A------------------------------------------TGTCGCTATCTGTGCCAG-------------------T----CGC--ACAGACG-TTGCCAT------------------------TG-ATTATTGCCGTTTACTTGCAGTACAGATACCGGAGCTGGAGGACTATGTTATCACGCAAATCGCATGCGGC	Size	Hit Count	Total Norm	Total	M027 Male-body	M028 Head	M047 Female-body	M061 Embryo	SRR060654 Ovary	SRR060655 Testis	SRR060656 Ovary	SRR060657 Testis	SRR060658 Ovary	SRR060659 Testis	SRR060660 Ovary	SRR060661 Embryo	SRR060662 Embryo	SRR060663 Embryo	SRR060664 Male-body	SRR060665 Female-body	SRR060666 Male-body	SRR060667 Female-body	SRR060668 Male-body	SRR060669 Female-body	SRR060670 Testis	SRR060671 Male-body	SRR060672 Female-body	SRR060673 Ovary	SRR060674 Ovary	SRR060675 Ovary	SRR060676 Ovary	SRR060677 Ovary	SRR060678 Testis	SRR060679 Testis	SRR060680 Testis	SRR060681 Testis	SRR060682 Embryo	SRR060683 Testis	SRR060684 Embryo	SRR060685 Embryo	SRR060686 Embryo	SRR060687 Embryo	SRR060688 Ovary	SRR060689 Testis	SRR1106712 embryo_0-2h	SRR1106713 embryo_0-2h	SRR1106714 embryo_2-4h	SRR1106715 embryo_4-6h	SRR1106716 embryo_4-6h	SRR1106717 embryo_6-8h	SRR1106718 embryo_6-8h	SRR1106719 embryo_8-10h	SRR1106720 embryo_8-10h	SRR1106721 embryo_10-12h	SRR1106722 embryo_10-12h	SRR1106723 embryo_12-14h	SRR1106724 embryo_12-14h	SRR1106725 embryo_14-16h	SRR1106726 embryo_14-16h	SRR1106727 larvae	SRR1106728 larvae	SRR1106729 mixed whole adult body	SRR1106730 embryo_16-30h	V047 Embryo	V053 Head	V116 Male-body	GSM1528803 follicle cells
.................................................................................................................................................................................................................................................................................................................................................................................ACAGATACCGGAGCTGGAGGACTATGTTATCACGCA.............	36	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
..................GCTTGGACATGAACTCCCCACCA.........................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....AATGATTACTCGCAGCTTGGAC........................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................GGACATGAACTCCCCACCA.........................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....ATGATTACTCGCAGCTTGGACATGAAC..................................................................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................................................TATCACGCAAATCGCATGCG..	20	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................GCTTGGACATGAACTCCCCACCAAAAGG....................................................................................................................................................................................................................................................................................................................................................................................	28	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................GCCACGTATGTCGCCATTTC.................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................CTGGAGGACTATGTTATCACGCAA............	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................TGAACTCCCCACCAAAAGGCC..................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droMoj3

TAGCAATGATTACTCACAACTGGGACATGAGCTACCCACCAAAAGGCCACGTATGTCGCCATTTCGTATGTACAA-ATCTTCCATTCTCGT-----TGGTACAC----------TT---------GT-----------------------------------------CA----------------C--ACCTCATTCCCAT----------------CAC---AACT-----------------T-----C--CACATGTCGCTCTCT----------------GTG---T---------TAGCCTGATTG-CCGGTTGCCATTTATT---------------GCTCTTACGGCCGTTTACTTGCAGTACAGATACCGGAGCTGCAGGATTACGTGATTACGCAAATTGCTTGCGGT	Size	Hit Count	Total Norm	Total	M046 Female-body	V041 Embryo	V049 Head	V056 Head	M060 Embryo	V110 Male-body
.............................................................................................................................................................................................................................................................................................................................................................................................GCTGCAGGATTACGTGATTACGC..............	23	1	1.00	1	1	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................GTTTACTTGCAGTACAGATACCGGA.....................................	25	1	1.00	1	1	0	0	0	0	0
....AATGATTACTCACAACTGG...........................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	1	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................TACAGATACCGGAGCTGCAGGATTAC........................	26	1	1.00	1	1	0	0	0	0	0

droGri2

AAGCAATGATTATGCCCAACTGGGGCATGAGTTGTCCAGCAAAAGGCCACGTATGTCGCCATTTCGTATGTACAT-ATCTTCCATTCTCGTTTTGT----ACAC----------TG---------TC-----------------------------------------GT-TCTCCTCACCCCCTGC--ACCACATTGTCGC-------------ACA----------------------------------------TGTCGCATCCAGTCAAAT---CTGTTGCTA---T---------GCGTCTCATGT------CT-----------------CATTGTTTG-TTT-GCTTTGTTCGTTTGCAGTGCAGATACCAGAGCTGGTGGATTGTGTGATCACGCAAATCGCTTGCGGC	Size	Hit Count	Total Norm	Total	M041 Female-body	V109 Male-body
.........................................................................................................................................................................................................................................................................................................................................................................................CAGAGCTGGTGGATTGTGTGATCA.................	24	1	1.00	1	0	1

dsi_12788

3l:1238343-1238494 +

Candidate

Unknown

Predicted structure

Flybase annnotation

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads