ID:

dsi_12766

 Coordinate:

3l:7742751-7742908 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-11.2 -10.9 -10.6

Flybase annnotation

exon [3l_7742646_7742750_-]; CDS [3l_7742646_7742750_-]; CDS [3l_7742909_7743314_-]; exon [3l_7742909_7743314_-]; intron [3l_7742751_7742908_-]

No Repeatable elements found

Sense Strand Reads

##################################################--------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
GCCTCAGAGTCCCGACAGCAGTCCCGTTGTGCCAAATGTGCCCACAAATGGTAGGTGTAGTTGGTGTTTTAAGAATAACTACCGTCTGCTTACTACTCATCCGCTGACCGTACTAATTTTTCCTCTCTTCTTTTGATTTTTGTGTTAACTCAACTAAATACAAAACACCGAAACTCCGAACAACCCAATCCAAACTCCCATACCCCAGTTGGTCGCTCGACTACCAAAAAGGAGCAGCGCTCGGATAACAATCTCTAC
***********************************************************************(((((...(((.(((.((.............)).))).)))...)))))..........(((((..(((((((((..........)))))))))...))))).............************************************************************************ 		Read size # Mismatch Hit Count Total Norm Total M053
female body
 SRR553487
NRT_0-2 hours eggs
 M023
head
 M024
male body		 M025
embryo
 SRR553485
Chicharo_3 day-old ovaries
 GSM343915
embryo
 SRR553488
RT_0-2 hours eggs
 SRR553486
Makindu_3 day-old ovaries
 SRR618934
dsim w501 ovaries
.......................................................................AGAATAACTACCGTCTGC......................................................................................................................................................................... 18 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0
........................CGTTGTGCCAAATGTGCCCA...................................................................................................................................................................................................................... 20 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0
.....................................................................................................................................................................CACCGAAACTCCGAACAACCC........................................................................ 21 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0
...............................................................................................................................................................................................................GTTGGTCGCTCGACTACC................................. 18 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0
.............................................................................................................................................................................................................................TACCAAAAAGGAGCAGCGGTCGGATAACAA....... 30 1 1 1.00 1 0 0 0 0 0 1 0 0 0 0
..................................................................................................................................................................................................................................AAAAGGAGCAGCGCTCGGATAAC......... 23 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
.....AGAGTCCCGACAGCAGTCCCGTTGTGC.................................................................................................................................................................................................................................. 27 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
..................................................GTAGGTGCAGTTGGCGTTTTAAGAA....................................................................................................................................................................................... 25 2 1 1.00 1 0 1 0 0 0 0 0 0 0 0
...................................................................................................................................TTTGATTTTTGTGTT................................................................................................................ 15 0 6 0.33 2 0 0 0 0 0 0 0 2 0 0
.........................................................TAGTTGGTGTGGTAAGA........................................................................................................................................................................................ 17 2 19 0.16 3 0 0 0 0 0 0 0 3 0 0
....................GGCTCGTTGTGGCAAATGTG.......................................................................................................................................................................................................................... 20 3 14 0.07 1 0 0 0 0 0 0 0 0 0 1
...................................................TAGGTGTTGTTCGAGTTTTA........................................................................................................................................................................................... 20 3 19 0.05 1 0 1 0 0 0 0 0 0 0 0
.........................................................TAGTTGGAGTTTTAAAAA....................................................................................................................................................................................... 18 2 20 0.05 1 0 0 0 0 0 0 0 0 1 0
.......................................................................................GCTTACGACTCGTCCG........................................................................................................................................................... 16 2 20 0.05 1 0 0 0 0 0 0 0 0 1 0

Anti-sense strand reads

CGGAGTCTCAGGGCTGTCGTCAGGGCAACACGGTTTACACGGGTGTTTACCATCCACATCAACCACAAAATTCTTATTGATGGCAGACGAATGATGAGTAGGCGACTGGCATGATTAAAAAGGAGAGAAGAAAACTAAAAACACAATTGAGTTGATTTATGTTTTGTGGCTTTGAGGCTTGTTGGGTTAGGTTTGAGGGTATGGGGTCAACCAGCGAGCTGATGGTTTTTCCTCGTCGCGAGCCTATTGTTAGAGATG
************************************************************************(((((...(((.(((.((.............)).))).)))...)))))..........(((((..(((((((((..........)))))))))...))))).............*********************************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553488
RT_0-2 hours eggs
 M024
male body		 SRR902009
testis
 M023
head
 SRR553487
NRT_0-2 hours eggs
 SRR618934
dsim w501 ovaries
 GSM343915
embryo
 SRR553486
Makindu_3 day-old ovaries
 M053
female body
............................................GTTTACCATCATCATCAACC.................................................................................................................................................................................................. 20 2 1 1.00 1 0 0 1 0 0 0 0 0 0
.............................................................................................................................................................................................GGTTTGCGGGAATGGGGT................................................... 18 2 1 1.00 1 1 0 0 0 0 0 0 0 0
..........................................................................................................GGGCATGGTTAAACAGGAGAG................................................................................................................................... 21 3 1 1.00 1 0 1 0 0 0 0 0 0 0
............................................................................................................GCATGGTTAAACAGGAGAGA.................................................................................................................................. 20 2 2 0.50 1 0 0 0 1 0 0 0 0 0
...............................................TACCACCCACATCAACC.................................................................................................................................................................................................. 17 1 3 0.33 1 1 0 0 0 0 0 0 0 0
.............................................................................................................CATGGTTAAACAGGAGAGATG................................................................................................................................ 21 3 8 0.25 2 0 0 0 2 0 0 0 0 0
...............................................................................................................GCATTAAAAAGGAGAGAAG................................................................................................................................ 19 2 6 0.17 1 0 0 0 0 0 0 1 0 0
.............................................................................................................................................................................................TGGTTGAGGGTATGGTGTCA................................................. 20 3 6 0.17 1 0 0 0 0 0 1 0 0 0
...............................................................................................................................................................................................................CAAGCTGCGAGCTCATGGT................................ 19 3 7 0.14 1 0 0 0 0 0 0 0 1 0
........................................................................................................................................................................................................................AGGGGATGGTTGTTCCTCGTC..................... 21 3 8 0.13 1 0 0 0 0 1 0 0 0 0
.....................................................................................................................................................................................TTGGGTTAGGATTGAGCGT.......................................................... 19 2 9 0.11 1 0 0 0 0 0 1 0 0 0
........................................................................................GATTGATGATTAGGCG.......................................................................................................................................................... 16 2 20 0.10 2 0 0 0 0 2 0 0 0 0
...................................................................................CAGACGAACGAATAGTAGGC........................................................................................................................................................... 20 3 11 0.09 1 0 0 0 1 0 0 0 0 0
..........................................................................................................................................................GTTGTTGTTTTGTGGCTTTGA................................................................................... 21 3 20 0.05 1 0 0 0 0 1 0 0 0 0
.............................................................................................................................................................................GTGGCTTGTTGGGTTAGAA.................................................................. 19 3 20 0.05 1 0 0 0 0 0 0 0 0 1
.........................................................................................................................................................................CTTTGCGGCTTGATGG......................................................................... 16 2 20 0.05 1 0 0 0 0 1 0 0 0 0

Generated: 04/24/2015 at 10:28 AM