ID:

dsi_12725

 Coordinate:

3l:16383103-16383397 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-44.9 -44.9 -44.9

Flybase annnotation

exon [3l_16382975_16383102_-]; CDS [3l_16382975_16383102_-]; CDS [3l_16383398_16383724_-]; exon [3l_16383398_16383886_-]; intron [3l_16383103_16383397_-]

No Repeatable elements found

Sense Strand Reads

##################################################-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
CCTGCGGAGTCGGTTTCATCGTGGCCATCGATGGCAAACGCTCTCACAAGGTAAGGATCCAGCATAAACATCCTTTCGATCCTGAAACCAAAACTTTATAACAAGCAAGTGTTTATTATAAAGTTGTTTAAGCTTCTTTTATAAACTTCTTTCAATATTGAAAACCAATCCATGTACATTAAATACCGTTCTACAATTTTGTATTATCCGTTTAAATATATACATGCATTATATTTGATTTGCTTTATTTATAAGTAAATGTTTTATTTATTAAGACGTTTAAATCTACGTATTGAAATTAAAAGCGATGAATGTAAGCTAAAAAGATTTTTGTTTCACACATAGATTCTACGTGATGCCCAGACCCTCTCAGAACGGATGAATCACCGCGGCGC
**************************************************....(((((..................)))))((((((...((((((((((.((((....)))).)))))))))).(((.(((((..(((((.......(((((((((............((((((..((((((...((..((((....))))..))..)))))).....))))))..(((((..(((......)))..))))).(((((((((((.....))))))))))).......))))))))).........)))))...))))).)))........)))))).......************************************************** 		Read size # Mismatch Hit Count Total Norm Total M024
male body		 M023
head
 SRR618934
dsim w501 ovaries
 SRR553488
RT_0-2 hours eggs
 SRR553485
Chicharo_3 day-old ovaries
 SRR553486
Makindu_3 day-old ovaries
 M025
embryo
 M053
female body
 SRR553487
NRT_0-2 hours eggs
 SRR902009
testis
........GTCGGTTTCATCGTGGCCATCGATGGC........................................................................................................................................................................................................................................................................................................................................................................ 27 0 1 5.00 5 5 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................................................................................................................................................................................TGCCCAGACCCTCTCAGAACGGATGAA............ 27 0 1 2.00 2 0 0 0 0 0 0 0 0 1 1
..................................................GTAAGGATCCAGCATAA........................................................................................................................................................................................................................................................................................................................................ 17 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0
....................................................................................................................................................................................................................................................................................................................................................................TGCCCAGACCCTGTCAGAACGGATGA............. 26 1 1 1.00 1 0 0 0 0 1 0 0 0 0 0
...........................................................................................................................................................................................................................................................................................................................................................TCTACGTGATGCCCAGACCCTCTCAGA..................... 27 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0
...............................TGGCAAACGCTCTCACAAGATT...................................................................................................................................................................................................................................................................................................................................................... 22 2 1 1.00 1 0 0 0 0 0 0 1 0 0 0
.CTGCGGAGTCGGTTTCATCGTGGCC................................................................................................................................................................................................................................................................................................................................................................................. 25 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
................................................................................................................................................................................................................................................................................................................................................................................CTCAGAACGGATGAATCACC....... 20 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0
....CGGAGTCGGTTTCATCGTGGCCATC.............................................................................................................................................................................................................................................................................................................................................................................. 25 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................................................................................................................................................................................CCCAGACCCTCTCAGAACGGATG.............. 23 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................................................................................................................................................................................AGACCCTCTCAGAACGGATGAATCACC....... 27 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
........GTCGGTTTCATCGTGGCCATC.............................................................................................................................................................................................................................................................................................................................................................................. 21 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0
......................................................................................................................................................................................................................................................................................................................................................................CCCAGACCCTCTCAGAACGGA................ 21 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0
.................................................................................................................................................................................................................................................................................................................................................................................TCAGAACGGATGAATCACCGCG.... 22 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0
..............................................................................................................................................................................................................................................................................................................AAACGATGAATGTTAGCT........................................................................... 18 2 4 0.25 1 0 0 0 1 0 0 0 0 0 0
....................................................................................................................................................................................................................................................................................................................................................CATAGAATGTAGGTGATGC.................................... 19 3 8 0.25 2 0 0 0 0 2 0 0 0 0 0
..................TCGTTGCCATCGATGG......................................................................................................................................................................................................................................................................................................................................................................... 16 1 14 0.14 2 0 0 0 0 0 2 0 0 0 0
.................................................................................CTGAAAACAAAACTTTA......................................................................................................................................................................................................................................................................................................... 17 1 7 0.14 1 0 0 0 1 0 0 0 0 0 0
...........................................................................TCGAGCCTGTAAGCAAAAC............................................................................................................................................................................................................................................................................................................. 19 3 17 0.06 1 0 1 0 0 0 0 0 0 0 0

Anti-sense strand reads

GGACGCCTCAGCCAAAGTAGCACCGGTAGCTACCGTTTGCGAGAGTGTTCCATTCCTAGGTCGTATTTGTAGGAAAGCTAGGACTTTGGTTTTGAAATATTGTTCGTTCACAAATAATATTTCAACAAATTCGAAGAAAATATTTGAAGAAAGTTATAACTTTTGGTTAGGTACATGTAATTTATGGCAAGATGTTAAAACATAATAGGCAAATTTATATATGTACGTAATATAAACTAAACGAAATAAATATTCATTTACAAAATAAATAATTCTGCAAATTTAGATGCATAACTTTAATTTTCGCTACTTACATTCGATTTTTCTAAAAACAAAGTGTGTATCTAAGATGCACTACGGGTCTGGGAGAGTCTTGCCTACTTAGTGGCGCCGCG
**************************************************....(((((..................)))))((((((...((((((((((.((((....)))).)))))))))).(((.(((((..(((((.......(((((((((............((((((..((((((...((..((((....))))..))..)))))).....))))))..(((((..(((......)))..))))).(((((((((((.....))))))))))).......))))))))).........)))))...))))).)))........)))))).......************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR902009
testis
 M024
male body		 SRR553487
NRT_0-2 hours eggs
 SRR618934
dsim w501 ovaries
 SRR553485
Chicharo_3 day-old ovaries
....................................................................................................................................................................................TTTATGGCGAGATGTCAAA.................................................................................................................................................................................................... 19 2 3 0.67 2 2 0 0 0 0
................................CCGTCTGCGAGAGGGTTCGAT...................................................................................................................................................................................................................................................................................................................................................... 21 3 3 0.33 1 0 1 0 0 0
......................................................................................................................................................................................................................................................................AAATCAATAATTCTGAAAATGTA.............................................................................................................. 23 3 4 0.25 1 0 0 1 0 0
.........................................................................................................................................................................................................................................................................................................................................ACACAAAGTGTGAATCTA................................................ 18 2 6 0.17 1 0 1 0 0 0
.................................................................................................................................................................................................................................................................................................................................................TGTGTATCTAGGATG........................................... 15 1 6 0.17 1 0 0 0 1 0
............................................................................................................................................................................................................................................................................................................................................CAAAGTGTGAATCTACGA............................................. 18 2 7 0.14 1 0 1 0 0 0
...........................................................................................................................................................................................................................................................................................................................................................................TGGGAGTGTCTTGCGTA............... 17 2 7 0.14 1 0 0 1 0 0
.................................................................................................................................................................................TAATTTTCGGCAAGATGTTCA..................................................................................................................................................................................................... 21 3 8 0.13 1 1 0 0 0 0
...............................TCCGTCTGCGAGAGGGTTC......................................................................................................................................................................................................................................................................................................................................................... 19 3 12 0.08 1 0 1 0 0 0
.........................................................CGGTCGCACTTGTAGGAAAGC............................................................................................................................................................................................................................................................................................................................. 21 3 14 0.07 1 0 0 0 0 1
......................................................................................................................................................................................................................................................................AAATGAATAATTCTG...................................................................................................................... 15 1 20 0.05 1 0 0 0 1 0

Generated: 04/24/2015 at 04:36 AM