ID:

dsi_1269

 Coordinate:

3l:16006723-16006919 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-25.5 -25.4 -25.4

Flybase annnotation

exon [3l_16006599_16006722_-]; CDS [3l_16006599_16006722_-]; CDS [3l_16006920_16006978_-]; exon [3l_16006920_16006978_-]; intron [3l_16006723_16006919_-]

No Repeatable elements found

mature
  1. dsi_1269  3l:16006863-16006877 -
  2. x:20241347-20241361 +
  3. node_2401:1019-1033 +
star

Sense Strand Reads

##################################################-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
TTATGTCGAACGCTCTGGAGGATGTCTCCTTCTTTGAGGAGCACAAAGAGGTCGGTGATCTTAATATCTCAGAAAATCATTGGATGTAGATTTGGATGAAGATAGATTTTTGATAAAGATATAAACTTGTCATGTTTTTTAAATGAAATAAAAGCACATTGGCTGATCCAAAACTCATATAACTCCTTACTTACAAGATTTTTAGAGAAAATTCAGAGTATAGAATTTTATCCTTAATTTTTCTCAGTTAAAAAACGACGAGCAAAGAATTTGGCTGATGCTCTTTGAACTCTACGA
**************************************************(((((.(((((....((((((..(((((..........)))))...)).))))))))).)))))...........(((((..(((((((..........)))))))..((((.....)))).....................))))).......(((((((....(((.((((....)))).)))...)))))))..************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR618934
dsim w501 ovaries
 SRR902009
testis
 GSM343915
embryo
 SRR553487
NRT_0-2 hours eggs
 M024
male body		 SRR553488
RT_0-2 hours eggs
 SRR553485
Chicharo_3 day-old ovaries
 M023
head
 O001
Testis
 SRR553486
Makindu_3 day-old ovaries
.....................ATATCTCCTTCTTTGAGGT................................................................................................................................................................................................................................................................. 19 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0
...............................................................................TGGGATGTAGAGTTGGATGGAG.................................................................................................................................................................................................... 22 3 2 0.50 1 0 0 1 0 0 0 0 0 0 0
.....................ATATCTCCTTCTTAGAG................................................................................................................................................................................................................................................................... 17 2 11 0.36 4 4 0 0 0 0 0 0 0 0 0
............................................................................................TGGATGAAGATAGAT.............................................................................................................................................................................................. 15 0 3 0.33 1 0 1 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................................................................AAAAAACGACGATCAAAAAA............................ 20 2 4 0.25 1 0 1 0 0 0 0 0 0 0 0
...............................................................................TCGGATGTAGATTTGG.......................................................................................................................................................................................................... 16 1 4 0.25 1 0 0 0 1 0 0 0 0 0 0
.....................ATATCTCCTTCTTAGAGG.................................................................................................................................................................................................................................................................. 18 2 4 0.25 1 1 0 0 0 0 0 0 0 0 0
.......GAACGCTCTGGGGGA................................................................................................................................................................................................................................................................................... 15 1 8 0.13 1 0 0 0 0 0 0 1 0 0 0
......................................................................TCAAAATCATGGGATGTAGA............................................................................................................................................................................................................... 20 3 8 0.13 1 0 0 0 1 0 0 0 0 0 0
..........................................................................................................................................................................................................................................................AAAAACGACGATCAAA............................... 16 1 9 0.11 1 0 1 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................................................................AAAAACGACGATCAAAAAA............................ 19 2 10 0.10 1 0 1 0 0 0 0 0 0 0 0
.............................................................................................................................................................ATTGGCGGATCCAAAA............................................................................................................................ 16 1 11 0.09 1 0 0 0 0 0 1 0 0 0 0
.......................................................TGATCTTAAAAACTCAGA................................................................................................................................................................................................................................ 18 2 11 0.09 1 0 0 0 0 1 0 0 0 0 0
....................................................................................TGTACATTTGAATGAAGA................................................................................................................................................................................................... 18 2 16 0.06 1 0 0 0 0 0 0 0 1 0 0
........................ACTCTTTCTTTGAGGAGCG.............................................................................................................................................................................................................................................................. 19 3 18 0.06 1 1 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................................................................ACTAAGTTCAAAAACGACG..................................... 19 3 20 0.05 1 0 1 0 0 0 0 0 0 0 0
...............................................................................................................................................................TGGCTGATCAAAAAC........................................................................................................................... 15 1 20 0.05 1 0 0 0 0 0 0 0 0 0 1
...................................................................................GTGGACATTTGGATGAAGA................................................................................................................................................................................................... 19 3 20 0.05 1 0 0 0 0 1 0 0 0 0 0
..............CGGGAGGAAGACTCCTTC......................................................................................................................................................................................................................................................................... 18 3 20 0.05 1 0 0 0 0 0 0 0 0 1 0
...........................CCTTCTTTGCGTAGAACAA........................................................................................................................................................................................................................................................... 19 3 20 0.05 1 0 0 0 0 0 1 0 0 0 0
....GTAGAACGCACTGGAGGAC.................................................................................................................................................................................................................................................................................. 19 3 20 0.05 1 0 0 0 0 1 0 0 0 0 0
.........................................................................................................................................................................................................................................................AAAAAACGACGATCACA............................... 17 2 20 0.05 1 0 1 0 0 0 0 0 0 0 0

Anti-sense strand reads

AATACAGCTTGCGAGACCTCCTACAGAGGAAGAAACTCCTCGTGTTTCTCCAGCCACTAGAATTATAGAGTCTTTTAGTAACCTACATCTAAACCTACTTCTATCTAAAAACTATTTCTATATTTGAACAGTACAAAAAATTTACTTTATTTTCGTGTAACCGACTAGGTTTTGAGTATATTGAGGAATGAATGTTCTAAAAATCTCTTTTAAGTCTCATATCTTAAAATAGGAATTAAAAAGAGTCAATTTTTTGCTGCTCGTTTCTTAAACCGACTACGAGAAACTTGAGATGCT
**************************************************(((((.(((((....((((((..(((((..........)))))...)).))))))))).)))))...........(((((..(((((((..........)))))))..((((.....)))).....................))))).......(((((((....(((.((((....)))).)))...)))))))..************************************************** 		Read size # Mismatch Hit Count Total Norm Total M023
head
 M025
embryo
 O001
Testis
 SRR553486
Makindu_3 day-old ovaries
 SRR553487
NRT_0-2 hours eggs
 SRR553488
RT_0-2 hours eggs
 M024
male body		 SRR902009
testis
 GSM343915
embryo
.................................................................TAGAGTCTTTTAGTAACCTACATCTA.............................................................................................................................................................................................................. 26 0 1 1.00 1 0 1 0 0 0 0 0 0 0
.............................................................................................................................................TTACTTTATTTTCGTGTA.......................................................................................................................................... 18 0 1 1.00 1 0 0 1 0 0 0 0 0 0
....................................GCCTCGTGTTTCTCCAGCCAC................................................................................................................................................................................................................................................ 21 1 1 1.00 1 1 0 0 0 0 0 0 0 0
.............................AAGAAAGTCCTCCTGTTTC......................................................................................................................................................................................................................................................... 19 2 3 0.33 1 0 0 0 1 0 0 0 0 0
........................................................................................................................................................................................................................................................................TGCTTTATCCGACTACGAGA............. 20 3 3 0.33 1 0 0 0 0 1 0 0 0 0
...................................................................................................................................................................ACTAGGTTTTGAGTATAAC................................................................................................................... 19 2 3 0.33 1 0 0 0 0 0 1 0 0 0
...................................................................................................................................................................................................................................................AGTCACTTTTTTGCTACTCT.................................. 20 3 12 0.17 2 0 0 0 0 0 0 2 0 0
..................................................................................................................................................................GACTAGGTTTTGAGA........................................................................................................................ 15 1 7 0.14 1 0 0 0 0 1 0 0 0 0
.........................................................................................................................................AAATTTACTTTATTTT................................................................................................................................................ 16 0 8 0.13 1 0 0 0 0 0 1 0 0 0
.........................................................................................................................................................................................................................................................................................GGAAACTTGAGATGC. 15 1 10 0.10 1 0 0 0 1 0 0 0 0 0
.............AGGCATGCTACAGAGGAAG......................................................................................................................................................................................................................................................................... 19 3 14 0.07 1 0 0 0 1 0 0 0 0 0
..........................................................................................................................................................................TTGGAGTATGGTGAGGAAT............................................................................................................ 19 3 16 0.06 1 0 0 0 0 0 0 0 0 1
......................................................................................................................................................TTTCGTGCAACCAACTAGA................................................................................................................................ 19 3 16 0.06 1 0 0 0 0 0 0 0 1 0

Generated: 04/24/2015 at 01:05 AM