ID:

dsi_1267

 Coordinate:

2r:18719255-18719427 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

Flybase annnotation

CDS [2r_18719430_18720697_+]; five_prime_UTR [2r_18718981_18719429_+]; exon [2r_18718981_18720697_+]

No Repeatable elements found

Sense Strand Reads

#################################################################################################################################################################################################################################################################################
TAAGCGGAGTGCAGCACGCAGGGGAAATACGAGCCATAATAAATCAACAGGTGAATAAGAACGGCCTAGTTGTGACGTCACTAACGCCTTAAAACCGTCGCAATTTCAAATTGCGTTCAAGCAAAAGCAAAAAGCAAGGGACAAAAAGTTGATAAGGGTCTAATGAAAATGCATGCGCAATAAAACGGATGCACAACACGAGTAACAACCATCTATATTGCAGAGATGAGGATCGTTTTGGAGCTTGCACTCCTGGTCTTGGCGGTCATCTCC
**************************************************.(((((((((..((...((((((((((..................)))))))))).....((((......))))..((.....))...((((...............))))........(((((.((........)).)))))...............)).))).)))).)).************************************************** 		Read size # Mismatch Hit Count Total Norm Total M025
embryo
 M024
male body		 SRR618934
dsim w501 ovaries
 M053
female body
 SRR902009
testis
 M023
head
 SRR902008
ovaries
.............................................................................................................................................................................................................................AGAGATGAGGATCGTTTTGGAGCTT........................... 25 0 1 1.00 1 1 0 0 0 0 0 0
..............................................................................................................................................................................................................................GAGATGAGGATCGTTTTGGA............................... 20 0 1 1.00 1 1 0 0 0 0 0 0
..........GCAGCACGTAGGGGAATTCCGA................................................................................................................................................................................................................................................. 22 3 1 1.00 1 0 0 1 0 0 0 0
..................................................................................................................................................................................................................................TGAGGATCGTTTTGGAGC............................. 18 0 1 1.00 1 0 1 0 0 0 0 0
.................................................................................................................................................................................................................................................AGCTTTCACTCCTGGTCTTGGCGGT....... 25 1 1 1.00 1 0 0 0 1 0 0 0
..................................................................................................................................................................................................................................TGAGGATCGTTTTGGAGCC............................ 19 1 1 1.00 1 0 1 0 0 0 0 0
................................................................................................................................................................................................................................GATGAGGATCGTTTTGGAGCT............................ 21 0 1 1.00 1 1 0 0 0 0 0 0
.........................................................................................................................................................................................................................................CGTTTTGGAGCTTGCACCCCCGGTCTT............. 27 2 1 1.00 1 0 0 0 1 0 0 0
.........................................................................................................................................................................................................................CAACAGAGATGAGGATCGTTTTGGA............................... 25 3 1 1.00 1 0 1 0 0 0 0 0
..................................................................................................................................................................................................................................................GCTTGCACTCCTGGTCTTGGC.......... 21 0 1 1.00 1 1 0 0 0 0 0 0
..........GCAGCACGTAGGGGA........................................................................................................................................................................................................................................................ 15 1 9 0.78 7 0 0 7 0 0 0 0
..........GCAGCACGTAGGGGAA....................................................................................................................................................................................................................................................... 16 1 3 0.33 1 0 0 1 0 0 0 0
..................................................................................................................................................................................................................................TGAGGATGTTTTTGGAGCT............................ 19 2 3 0.33 1 0 0 0 0 1 0 0
....................................................................................................................................................................................................................................AGGATGGTTTTCGAGATTG.......................... 19 3 20 0.10 2 0 0 0 0 0 2 0
.....................................................................TTCTGACGTTGCTAACGCC......................................................................................................................................................................................... 19 3 15 0.07 1 0 1 0 0 0 0 0
.............................................................................................................................................................................................................................AGAGATGAGAATGGTATTG................................. 19 3 20 0.05 1 0 0 1 0 0 0 0
..........................................................................................................................................................................................................................TGCAGAATTGAGGACCGTTTT.................................. 21 3 20 0.05 1 0 0 0 0 0 0 1

Anti-sense strand reads

ATTCGCCTCACGTCGTGCGTCCCCTTTATGCTCGGTATTATTTAGTTGTCCACTTATTCTTGCCGGATCAACACTGCAGTGATTGCGGAATTTTGGCAGCGTTAAAGTTTAACGCAAGTTCGTTTTCGTTTTTCGTTCCCTGTTTTTCAACTATTCCCAGATTACTTTTACGTACGCGTTATTTTGCCTACGTGTTGTGCTCATTGTTGGTAGATATAACGTCTCTACTCCTAGCAAAACCTCGAACGTGAGGACCAGAACCGCCAGTAGAGG
**************************************************.(((((((((..((...((((((((((..................)))))))))).....((((......))))..((.....))...((((...............))))........(((((.((........)).)))))...............)).))).)))).)).************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553488
RT_0-2 hours eggs
 M053
female body
 SRR618934
dsim w501 ovaries
 SRR553486
Makindu_3 day-old ovaries
.............................................TTGTCCACTTATTCTTGCCGG............................................................................................................................................................................................................... 21 0 1 1.00 1 0 1 0 0
.................................................................................................................................................................................................................................................TCGAAGGTGAGGACCA................ 16 1 2 0.50 1 0 0 1 0
........................................................................................................................................................................................................................................AGTAAAGCCTCGAACGTG....................... 18 2 7 0.43 3 3 0 0 0
............................................................................................................................................................................................................................................AAGTCTCGAACGTGAGGA................... 18 2 4 0.25 1 1 0 0 0
........................................................................................................................................................................................................................................AGTAAAGTCTCGAACGTGAG..................... 20 3 5 0.20 1 1 0 0 0
..........................................................................................................................................................................................CCTATGAGTTGTGTTCATTG................................................................... 20 3 5 0.20 1 0 0 1 0
..TCGCCTCACGTCGTGA............................................................................................................................................................................................................................................................... 16 1 7 0.14 1 0 0 1 0
............................................................................................................................................................................................................................................AAGCCTCGAACGTGGGG.................... 17 2 7 0.14 1 1 0 0 0
...........................................................................................................................................................................................................................................AAAGCCTCGAACGTG....................... 15 1 8 0.13 1 1 0 0 0
.........................................................................................................................................................................................................................................GTAAAGCCTCGAACGTG....................... 17 2 17 0.12 2 2 0 0 0
...........................................................................................................................................................................................................................................AAAGTCTCGAACGTGAGGAG.................. 20 3 10 0.10 1 1 0 0 0
...........................................................................................................................................................................................................ATGTTGGGAGATATGACG.................................................... 18 3 18 0.06 1 0 0 1 0
........................................GTTAGTAGTCCACTTAGTCT..................................................................................................................................................................................................................... 20 3 20 0.05 1 0 0 0 1

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim2 2r:18719205-18719477 + dsi_1267 TAAGC--GG----AGTGCAGCACGCAGGG-GA------AATACGAGC---CA---TAAT-AA-ATCAA------CAGGTGAATAA-------------------GAACG---GCCTAGTTGTGACGTCACTA--ACGCCTT------AAAA----------CCGTCGCAATTT-CAAATTGCGTTCAAGCAAAAGCAAAAA--GCAAGGGACAAAA-------------------------AGTTGATAAG--GG-----TCTAATG---AAAATGCATGCGCAATAAAACGGATGCACAACACGAGTAA-------------------------------------------------CAA-CCATCTATATTGCAGAGATGAGGATCGTTTTGGAGCTTGCACTCCTGGT---CTTGGCGGT--CATCTCC
droSec2 scaffold_9:1491251-1491523 + TAAGC--GG----AGTGCAGCACGCAGGG-GA------AATACGAGC---CA---TAAT-AA-ATCAA------CAGGTGAATAA-------------------GAACG---GCCTAGTTGTGACGTCACTA--ACGCCTA------AAAA----------CCGTCGCAATTT-CAAATTGCGTTCAAGCAAAAGCAAAAA--GCAAGGGACAAAA-------------------------CGTTGATAAG--GG-----TCTAATG---AAAATGCATGCGCAATAAAACGGATGCACAACACGAGTAA-------------------------------------------------CAA-CCATCTATATTGCAGAGATGAGGATCGTTTTGGAGCTTGCACTCCTGGC---CCTGGCGGT--CATCTCC
dm3 chr2R:18181207-18181479 + TAAGC--GA----AGTGCAGCGCGCAGGG-GA------AATACGAGC---CA---TAAT-AA-ATCAA------CAGGTGAATAA-------------------GAACG---GCCTAGTTGTGACGTCACTA--ACGCCTT------GAAA----------TCGTCGCAATTT-TAAATTGCGTTTAAGCAAAAGCAAAAA--GCAAGTGAAAAAA-------------------------CGTTGATAAG--GG-----TCTAATG---AAAATGCATGCGCAATAAAACGGAAGCACACCACCAGTAA-------------------------------------------------CAA-CCATCTATATTGCAGAGATGAGGATCGTTTTGGAGCTTGCACTTCTGGT---CTTGGGGGT--CATCTCC
droEre2 scaffold_4845:12322000-12322254 + TAAGG--CG----AGTGCAGCTCGAAGGG-AA------A----------------CAAC-AA-TTCAA------CAGGTGAATAA-------------------GAACT---GGCT-ATTGTGACGTCACTA--ACACCTT------C-AA----------TCGTCGCAATTT-CAAATTGCGTTCAAGCCAAAGCCGGAT-G-------GCAAAA-------------------------CGCTGATAAG--GG-----TCTAATG---AAAGTGCATGCGCAATAGAGCGGGTGCACAACACCAGTAA-------------------------------------------------CAA-CCATCTGTATTGCAGAGATGCGGATCGTTTCGGAGGTGGCTCTCCTGTT---CCTGGGGGT--CATCTCC
droYak3 2R:17932426-17932699 + TAAGG--CG----AGTGCAGCTGGAAGGG-GAAGGGAAAATACGAGC---CA---TAAC-AA-TTCAA------CAGGTGAATAA-------------------GTACT---GGCTAATTGTGACGTCACTA--ACGCCTT------CAAA----------TCGTCGCAATTT-CAAATTGCGTTCAAGCAAAAGCCCGGATG-------GCAAAT-------------------------CGCAGATAAG--AG-----TCTAATG---AAAATGCATGCGCAATACAGCAGAAGCACAACATCAGTAA-------------------------------------------------CAA-CGATCTATATTACAGAGATGAAGACGATTTGGGAGCTGGTACTCCTCCT---CCTGGCGGT--CATTTCC
droEug1 scf7180000409672:6083825-6084129 + TAAGT--GG----AGTGCAGTTCGAAGGG-GA------AATTCGAGC---A------AT-AG-CCAAA------CAGGTGAATAA-------------------GTCCG---ATCTAACTGTGACGTCACTG--ACGCCTT------GAAA----------CCGTCGCAATTT-CAAATTGCGTTTAAGCAAAAACCAGAGAGACAG-------AAAGTGGAAAACAAAA---CTCGCT--CGCTGATAAG--GGTTC--CCTTATG---GAAATGCATGCGCAATAAAGGAGATT-------------A------------------TAGCAGTGGAT-CTCGAAACCTAATCAGGCCCAT-CCATCTAAATTGCAGACATGAGGATCGGCTGGGACCTGGTTCTCCCGCT---CTTCGTGAT--CATCTCC
droBia1 scf7180000302143:2529879-2530177 - TAAG---GG----AGTGCAGTTCGAAGGG-GA------AATACGAGC---AG---CTAT-AA-TTCAA------CAGGTGAATAA-------------------GTCCG---AGCAAACTGTGACGTCACTA--ACGCCTT------CAAA----------TCGTCGCAATTT-CTAATTGCGTTTAAGCAAAAACCGGAGAGTC-G-------CAAGCTGAAAACAAAA---ACGGTC--CGCTGATAAGGGGG-----CTTAATG---AAAATGCATGCGCAATAGAGGAGATT-------------------------------------GTGGAT-CTGTAAATAAAATCCTCTTCAC-CCATCTATATTGCAGACATGAGGATCGTTTCGGTTCTGGTTCCCCTGCT---CTTGGGGAT--CATCTCC
droTak1 scf7180000415739:34813-35113 + TAAGA--GG----AGTGCAGTTCGAAGGG-GA------AATACGAGA---GG---CAGC-AA-TTCAA------CAGGTGAATAA-------------------GTTCG---GGCTAACTGTGACGTCACAA--ACGCCTT------GAAA----------TCGTCGCAATTT-GTAATTGCGTTTAAGCAAAAACCACAGAGACAG-----A-AAAGTAGAAAACAAAA---AGTGTC--CGGTGATAAG--GT-----GTATATG--AAAAATGCATGCGCAATAGAGTAGATT-------------------------------------GTGGAA-CTCGAATTTTAATCAACTTCAT-CCATCTCTATTGCAGACATGAGGTTCCCTTGGGATCTGATTATCCTGCT---CCTGGGGAT--CATCTCT
droEle1 scf7180000491282:96540-96815 - TAAGA--GG----AGTGCAGTCCGAATCG-GA------AATACGAGC---CG---CAAT-AA-TTCAA------CAGGTGAATAA-------------------GTCCG---TTCTGATTGTGACGTCACTA--AGGCCTA------AAAA----------TCGTCGCAATTT-CAAATTGCGTTTAAGACAA---------------------AAAGTTGAAAACAAAA---A--GTG--CCCTGATAGG--GA-----TCTAATT---AAAATGCATGCGCAGTAAAGCAGT-G--------------------------------------------CTCGAAACTAAGTGAACTTCAT-TCATCTACATTGCAGACATGAGGATCGGCTGGGCAGTGGTGCTGCTGCT---TTCGGGGAT--CATCTCC
droRho1 scf7180000768214:437-718 - TAAGC--GG----AGTGCAGTCCGCAGGG-GA------AATACGAGC---GG---CAAC-AA-TTCCA------CAGGTGAATAA-------------------GTCCG---AGCTGATTGTGACGTCACTA--GCGCCTT------GAAA----------TCGTCGCAATTT-CAAATTGCGTTTAAGCAAAAACCAGAG--ACAA-------TAAGTAGAAAACAAAAAATA--GTG--TCCCGATAGG--GA-----TCCAATT---GAAATGCATGCGCAATAAAGCGGTAT--------------------------------------------CTCGAAATTAACCCAACT-----TCGTTTACATTGCAGAAATGAGAATCGCTT------TGGTTCTCCTGCT---CTTGGGGAT--CATCTCC
droFic1 scf7180000454066:2082604-2082912 + TAAAACCCA----ACTGCATTTCGAAGGG-AA------AATACGAGC---CA---TAAT-AA-CTCAA------AAGGTGAATAA-------------------GTCCG---AGCTAATTGTGACGTCACTA--ACGCCTT------GAAA----------TCGTCGCAATTT-CGAATTGCGTTTAAGCAAAAGCCAGAGAGACAA-------TAACTTGAAAACAGAATACAATTTTAGCCCTGATAAGAGCG-----TGAAATG---AAAATGCATGCGCAATAGAGGAGAAT-------------------------------------CTGGATTGTGGAAATTTAATCAGCTTCAT-TCATCTATATTGCAGAAATGAGGATCGGATTGGAATTAGTTATCCTACT---TTTGGGATT--CCTCTCA
droKik1 scf7180000302471:1310475-1310762 - TAAGT--GC----AGTGCAGTTCGAAAGGGGA------AATACGAGT---GA---TTAA-AA-TCCAG------CAGGTGAATACTCAGTCATACATTGTGAAAGCCCA---AGCTGATAGTGACGTCACTA--GTGCCGT------GGAA----------TCGTCGCAGTTTATGAACTGCGTTTAAGCAGAGGCCAAAA--ACAG-----AAAAGGCTGAAA------------------------------------GCTAATGGAAGAATTGCCTGCGCAATAGGCC----------------------------------------------------TAAATTCAATCACCTTCCT-CCGTCTGTCTTACAGCAATGCGGATGGGCCTGGAGCTGGTTTGCCTGCTACTCCTGGCCAC--GGCCTCC
droAna3 scaffold_13266:2196823-2197101 + TAAGT--CG----ATTGCAGTTCGAAAGG-TG---TATAATACGAGG---CA---CACAAAA-TCCAA------CAGGTGAATAG----------CTCGTGGAAACCCAACAAACAGTCTGTGATGTCACTA--GCCCCCT------GGAA----------TCGACGCAATTT-TAAACTGCGTTTAACCAAAAGTCCA-GAGACAA------------------CAA--AATAATTTC--AGCTGATAAG--TC-----GTTAATG---GCAGTGCCTGCGCATTAAAGTATAT--------------A-------------------------------------------------TAT-TCGTATTCCTTGCAGATATGGGGCTGTTTTTGTTGCTCGCTGGCCTCCT---ACTGGGCCT--GATCTCC
droBip1 scf7180000396384:383710-383966 - TAAGT--CG----ATTGCAGTTCGAAAGG-CG---TTTAGTTCGAGG---CA---CACAAAA-TCCAA------CAGGTGAATAG--------------------------------TCTGTGATGTCACTA--GCCCCCA------GGAA----------TCGACGCAATTT-TAAACTGCGTTTAACCAAAAGCCCA-GAGACAA------------------CAA--AATAATTTC--AGCTGATAAG--TC-----GTTAATG---AAAAGGCCTGCGCATTAATGTATAT--------------A-------------------------------------------------TAT-TCATATTCCTTGCAGATATGGGGTTGTTTTGGTTGCTCGCTAGCCTCCT---ACCCTGCCT--GATCTCC
dp5 3:14953398-14953736 - TAACG--GGAGTGAGTGCACTGCGAAGAG-GA-GG---AATAACCCC---AA---CAGAAAT-CCCAA------CAGGTGAATAA----------ATCGTGTGAGTCCA---AGCGAGTAGTGACGTCACACAAGCGCCTTA-----CAAA----------TCGTCGCAATTT-CGAAGTGGA-----ACAGAACACAAAA--GCATTTTAAA------------TAAG-AATATTGTG--CGCTGATAAG--AGTGCGGTCCGATG---GAAATGCATGCGCAATAAG-TA--------GCACCAGGAAGACATCGATGAGAAAACGTATTGGCAGGT-GT-----TGTACTAGCATTCGTCTCGTCTCTCTTTTAGGCATGGGGCGAAGCCTGGAGCTGGTTCTGCTGCT---GCTGCAGCTGGGATCGCT
droPer2 scaffold_4:4097938-4098285 + TAACG--GGAGTGAGTGCACTGCGAAGAG-GA-GGAATAACCCGAACAACCCCAACAGAAAT-CCCAA------CAGGTGAATAA----------ATCGTGTGAGTCCA---AGCGAATAGTGACGTCACACAAGCGCCTTA-----CAAA----------TCGTCGCAATTT-CGAACTGGA-----ACAGAACACAAAA--GCAGTTTAAA------------TAAG-AATATTGTG--TGCTGATAAG--AGTGCGGTCCGATG---GAAATGCATGCGCAATAAG-TA--------GCACCAGGAAGACATCGATGAGAAAACGTATTGGCAGGT-GT-----TGTACTAGCATTCGTCTCGTCTCTCTTTTAGGCATGGGGCGAGGCCTGGAGCTGGTTCTGCTGCT---GCTGCAGCTGGGATCGCT
droWil2 scf2_1100000002935:4660-4795 + TGAGT--GT------------GCCAAAAG-AG------ACTATATAC---TA---TA-------CAAAAATATGTATATGTATAG-------------------ATC-----------------------TAAAGCGGCTTAAATGTGAAT----------TCAACGCAATTT-CAAATTGCGTTCAATTGAAATAAAAAA--AAACCTTAAAAAA-------------------------AGTAAAGAA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droVir3 scaffold_10324:677435-677598 + TAAGCTCTG----AGCGTTGTGGGATTAG-AA------AA----AGC---CATTACAAATTTTTCAAG------CAGGTGAATAA-------------------ATTCG---T----AGCGTGACGTCACTAATAAGCCAAAACTGCGAATTCGGGCTAAAGCGACGCAATTA-CCAAATGCGTATAAGCTAAAATCAAAT--ATATGTAAAAAAA-------------------------A-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droMoj3 scaffold_6496:2516189-2516206 + G--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T---CTTGGCGGG--CCTCTTT

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
TAAGC--GG----AGTGCAGCACGCAGGG-GA------AATACGAGC---CA---TAAT-AA-ATCAA------CAGGTGAATAA-------------------GAACG---GCCTAGTTGTGACGTCACTA--ACGCCTT------AAAA----------CCGTCGCAATTT-CAAATTGCGTTCAAGCAAAAGCAAAAA--GCAAGGGACAAAA-------------------------AGTTGATAAG--GG-----TCTAATG---AAAATGCATGCGCAATAAAACGGATGCACAACACGAGTAA-------------------------------------------------CAA-CCATCTATATTGCAGAGATGAGGATCGTTTTGGAGCTTGCACTCCTGGT---CTTGGCGGT--CATCTCCSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
........................................................................................................................................................................................................................................................................................................................................................................................AGAGATGAGGATCGTTTTGGAGCTT................................2511.00100100000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................GAGATGAGGATCGTTTTGGA....................................2011.00100100000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................TGAGGATCGTTTTGGAGC..................................1811.00101000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................TGAGGATCGTTTTGGAGCC.................................1911.00101000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................GATGAGGATCGTTTTGGAGCT.................................2111.00100100000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................GCTTGCACTCCTGGT---CTTGGC............2111.00100100000000000000
droSec2
TAAGC--GG----AGTGCAGCACGCAGGG-GA------AATACGAGC---CA---TAAT-AA-ATCAA------CAGGTGAATAA-------------------GAACG---GCCTAGTTGTGACGTCACTA--ACGCCTA------AAAA----------CCGTCGCAATTT-CAAATTGCGTTCAAGCAAAAGCAAAAA--GCAAGGGACAAAA-------------------------CGTTGATAAG--GG-----TCTAATG---AAAATGCATGCGCAATAAAACGGATGCACAACACGAGTAA-------------------------------------------------CAA-CCATCTATATTGCAGAGATGAGGATCGTTTTGGAGCTTGCACTCCTGGC---CCTGGCGGT--CATCTCCSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
...............................................................ATCAA------CAGGTGAATAA-------------------GAACG---GC...............................................................................................................................................................................................................................................................................................................................2312.0021001
...............................................................................................................................................................................................................................................................................................................................................................................................................TTGCACTCCTGGC---CCTGGCGGT--.......2211.0010010
TAAGC--GG----AGTGCAGCACGCAGGG-...................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010100
.......................GCAGGG-GA------AATACGAGC---C..............................................................................................................................................................................................................................................................................................................................................................................................1811.0010010
..................................................................................................................................................................................................................ACAAAA-------------------------CGTTGATAAG--GG-----T............................................................................................................................................................................1911.0010010
...............................................................................................................................................................................................................................................................................................................................................................................................................TTGCACTCCTGGC---CCTGGCG...........2011.0010010
...................GCACGCAGGG-GA------AATACGA....................................................................................................................................................................................................................................................................................................................................................................................................1911.0010100
..............................................................................................................................................................................................................................................................................................AAAACGGATGCACAACACGAGT.............................................................................................................................2211.0010010
..................................................................................................................................................................................................................................................................................................................................................................................TATTGCAGAGATGAGGATC............................................1911.0010100
...................GCACGCAGGG-GA------AATACGAGC---...............................................................................................................................................................................................................................................................................................................................................................................................2111.0010010
.....................ACGCAGGG-GA------AATACGAGC---C..............................................................................................................................................................................................................................................................................................................................................................................................2011.0010010
.............................................................................................................................................................................................................AAGGGACAAAA-------------------------CGTTGATAAG--GG-----T............................................................................................................................................................................2411.0010100
..........................................................................................................................................................................................................................................................................................................................................................................................AGATGAGGATCGTTTTGGAGC..................................2111.0010100
...........................................................................................................................................................................................................................................................................................AATAAAACGGATGCACAACACGA...............................................................................................................................2311.0010100
...................GCACGCAGGG-GA------AATACGAGC---C..............................................................................................................................................................................................................................................................................................................................................................................................2211.0010010
dm3
TAAGC--GA----AGTGCAGCGCGCAGGG-GA------AATACGAGC---CA---TAAT-AA-ATCAA------CAGGTGAATAA-------------------GAACG---GCCTAGTTGTGACGTCACTA--ACGCCTT------GAAA----------TCGTCGCAATTT-TAAATTGCGTTTAAGCAAAAGCAAAAA--GCAAGTGAAAAAA-------------------------CGTTGATAAG--GG-----TCTAATG---AAAATGCATGCGCAATAAAACGGAAGCACACCACCAGTAA-------------------------------------------------CAA-CCATCTATATTGCAGAGATGAGGATCGTTTTGGAGCTTGCACTTCTGGT---CTTGGGGGT--CATCTCCSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
.................................................................................................................................................................................................................................................................................................................................................................................ATATTGCAGAGATGAGGAT.............................................1912.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000
............................................................................................................................................................................................................................................................................................................................................................................................ATGAGGATCGTTTTGGAGC..................................1912.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000
.................................................................................................................................................................................................................................................................................................................................................................................ATATTGCAGAGATGAGGA..............................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................CTTCTGGT---CTTGGGGGT--CA.....1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................GCTTGCACTTCTGGT---CTT...............1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................GATGAGGATCGTTTTGGAGCT.................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................GAAAAAA-------------------------CGTTGATAAG--GG-----T............................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................CGTTTTGGAGCTTGCACTTCTG.......................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................GCAGGG-GA------AATACGAGC---CA---TAAT-AA-..................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................AGCTTGCACTTCTGGT---CTTGGGGGT--.......2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000
..................................................................................................................................................................................................................................................................................................................................................................................................ATCGTTTTGGAGCTTGCACTT..........................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................GATGAGGATCGTTTTGGA....................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000
...GC--GA----AGTGCAGCGCGCAGGG-GA------...........................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000
.................................................................................................................................................................................................................GAAAAAA-------------------------CGTTGATAAG--GG-----TCTA.........................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................GCAGAGATGAGGATCGTTTTGGAGCTT................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................GAGATGAGGATCGTTTTGGA....................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................ACTA--ACGCCTT------GAAA----------TCGT............................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................TGAGGATCGTTTTGGAGCTTGCACTTC.........................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000
..........................................................................................................................................................................................................................................................................................................................................................................................................GGAGCTTGCACTTCTGGT---CTT...............2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................TGGAGCTTGCACTTCTGGT---CTTGGG............2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000
....C--GA----AGTGCAGCGCGCAGG.....................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000
.............................................................................................................................................................................................................................................................................................................................................................................................TGAGGATCGTTTTGGAGC..................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000
.......GA----AGTGCAGCGCGCAGGG-GA------A..........................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................GAGGATCGTTTTGGAGCTTGCA.............................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............AGTGCAGCGCGCAGGG-GA------AATA.......................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000
...............................................................................GAATAA-------------------GAACG---GCCTAGT..........................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000
........A----AGTGCAGCGCGCAGGG-G..................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000
.........................................................................................................................................................................................................................................................................................................................................................................................................TGGAGCTTGCACTTCTGGT---CTTG..............2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................TTTGGAGCTTGCACTTCTGGT---CTTG..............2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................TGCACTTCTGGT---CTTGGGGGT--.......2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000
droEre2
TAAGG--CG----AGTGCAGCTCGAAGGG-AA------A----------------CAAC-AA-TTCAA------CAGGTGAATAA-------------------GAACT---GGCT-ATTGTGACGTCACTA--ACACCTT------C-AA----------TCGTCGCAATTT-CAAATTGCGTTCAAGCCAAAGCCGGAT-G-------GCAAAA-------------------------CGCTGATAAG--GG-----TCTAATG---AAAGTGCATGCGCAATAGAGCGGGTGCACAACACCAGTAA-------------------------------------------------CAA-CCATCTGTATTGCAGAGATGCGGATCGTTTCGGAGGTGGCTCTCCTGTT---CCTGGGGGT--CATCTCCSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
..........................................................................................................................................................................................AAGCCAAAGCCGGAT-G-------GCAAA..........................................................................................................................................................................................................................2111.0010000100
...................................................................................................................................................................................................................................................................................................................................................................................................................TCTCCTGTT---CCTGGGGGT--C......1911.0010000010
......................................................................................................................................................................................................................AA-------------------------CGCTGATAAG--GG-----TCTAATG---AAAGTGC............................................................................................................................................................2811.0010000100
........................................................................................................................................................................................................................................................AAG--GG-----TCTAATG---AAAGTGC............................................................................................................................................................1911.0010000010
......................................................................................................................................................................................................................................................ATAAG--GG-----TCTAATG---AAAGTGC............................................................................................................................................................2111.0010000100
....................................................................................................................................................................................................CGGAT-G-------GCAAAA-------------------------CGCTGATAAG--GG-----TCT..........................................................................................................................................................................2711.0011000000
......................................................................................................................................................................................................GAT-G-------GCAAAA-------------------------CGCTGATAAG--GG-----T............................................................................................................................................................................2311.0010100000
...............................................................................................................................CACTA--ACACCTT------C-AA----------TCGTCGC.........................................................................................................................................................................................................................................................................2211.0010000100
....................................................................................................................................................................................................................................................................................CATGCGCAATAGAGCGGGTGCACAA....................................................................................................................................2511.0010000100
........................................................................................................................GTGACGTCACTA--ACACCTT------C-AA----------TC..............................................................................................................................................................................................................................................................................2411.0010100000
...........................................................................................................................................................................................................................................................................................AATAGAGCGGGTGCACAACACCA...............................................................................................................................2311.0010000100
..........................................................................................................................GACGTCACTA--ACACCTT------C-AA----------TCGT............................................................................................................................................................................................................................................................................2411.0010000100
droYak3
TAAGG--CG----AGTGCAGCTGGAAGGG-GAAGGGAAAATACGAGC---CA---TAAC-AA-TTCAA------CAGGTGAATAA-------------------GTACT---GGCTAATTGTGACGTCACTA--ACGCCTT------CAAA----------TCGTCGCAATTT-CAAATTGCGTTCAAGCAAAAGCCCGGATG-------GCAAAT-------------------------CGCAGATAAG--AG-----TCTAATG---AAAATGCATGCGCAATACAGCAGAAGCACAACATCAGTAA-------------------------------------------------CAA-CGATCTATATTACAGAGATGAAGACGATTTGGGAGCTGGTACTCCTCCT---CCTGGCGGT--CATTTCCSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
.........................................................................................................................................................................................................................................................................................................................................................................................GAGATGAAGACGATTTGGG.....................................1912.00200000020000
.............................................................................................................................................................................................CAAAAGCCCGGATG-------GCAAAT-------------------------................................................................................................................................................................................................2011.00101000000000
.........................................................................................................................................................................................CAAGCAAAAGCCCGGATG-------...............................................................................................................................................................................................................................1811.00101000000000
.....................................AAATACGAGC---CA---TAAC-AA-TTCAA------CAGA...................................................................................................................................................................................................................................................................................................................................................................2711.00101000000000
...................GCTGGAAGGG-GAAGGGAA...........................................................................................................................................................................................................................................................................................................................................................................................................1811.00101000000000
......................................................................................................................................................................................................................................................................................................................................................................................................TTTGGGAGCTGGTACTCCTCCT---CCTGGC............2811.00101000000000
.................................................................................................................................................................................................................................................................................................................................................................................................GACGATTTGGGAGCTGGTACTCCTC.......................2511.00100000010000
.......................GAAGGG-GAAGGGAAAATA.......................................................................................................................................................................................................................................................................................................................................................................................................1811.00101000000000
...........................................................................................................................................................................................................................................................................................................................................................................................GATGAAGACGATTTGGGA....................................1811.00101000000000
................GCAGCTGGAAGGG-GAAGG..............................................................................................................................................................................................................................................................................................................................................................................................................1811.00100100000000
..............................................................................................................................................................................................................................................................................................................................................................................................GAAGACGATTTGGGAGCTGGT..............................2111.00100000010000
........................................................................................................................................................................AATTT-CAAATTGCGTTCAAG....................................................................................................................................................................................................................................................2011.00100000010000
.................................................................................ATAA-------------------GTACT---GGCTAATTGTGACGTCA................................................................................................................................................................................................................................................................................................................2611.00101000000000
...................GCTGGAAGGG-GAAGGGAAAATACGAGC---...............................................................................................................................................................................................................................................................................................................................................................................................2711.00100000010000
...................................................................................................................................................................................................................................................................................................................................................................................ATTACAGAGATGAAGACGATT.........................................2111.00100000010000
..........................................................................................................................GACGTCACTA--ACGCCTT------CAAA----------TCGT............................................................................................................................................................................................................................................................................2511.00101000000000
..............GTGCAGCTGGAAGGG-GAAGGGA............................................................................................................................................................................................................................................................................................................................................................................................................2211.00101000000000
.......................................................................................................................................................................................................................................................................................................................................................................................CAGAGATGAAGACGATTTGGGAGC..................................2411.00100000010000
.....................TGGAAGGG-GAAGGGAAAATACG.....................................................................................................................................................................................................................................................................................................................................................................................................2211.00101000000000
.....................................AAATACGAGC---CA---TAAC-AA-TTCAA------CAG....................................................................................................................................................................................................................................................................................................................................................................2611.00100000010000
...............................................................................................................................CACTA--ACGCCTT------CAAA----------TCGTCGCA........................................................................................................................................................................................................................................................................2411.00100000010000
........G----AGTGCAGCTGGAAGGG-GA.................................................................................................................................................................................................................................................................................................................................................................................................................1911.00101000000000
...........................................................................................................................................................................................................................................................................................................................................................................................GATGAAGACGATTTGGGAGC..................................2011.00100000010000
........G----AGTGCAGCTGGAAGGG-GAAGGGA............................................................................................................................................................................................................................................................................................................................................................................................................2411.00100000010000
...................GCTGGAAGGG-GAAGGGAAA..........................................................................................................................................................................................................................................................................................................................................................................................................1911.00100000010000
..................................................................................TAA-------------------GTACT---GGCTAATTGTGAC....................................................................................................................................................................................................................................................................................................................2111.00101000000000
...................................................A---TAAC-AA-TTCAA------CAGGTGA................................................................................................................................................................................................................................................................................................................................................................1911.00101000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................GGGAGCTGGTACTCCTCCT---CCTGG.............2411.00101000000000
droEug1
TAAGT--GG----AGTGCAGTTCGAAGGG-GA------AATTCGAGC---A------AT-AG-CCAAA------CAGGTGAATAA-------------------GTCCG---ATCTAACTGTGACGTCACTG--ACGCCTT------GAAA----------CCGTCGCAATTT-CAAATTGCGTTTAAGCAAAAACCAGAGAGACAG-------AAAGTGGAAAACAAAA---CTCGCT--CGCTGATAAG--GGTTC--CCTTATG---GAAATGCATGCGCAATAAAGGAGATT-------------A------------------TAGCAGTGGAT-CTCGAAACCTAATCAGGCCCAT-CCATCTAAATTGCAGACATGAGGATCGGCTGGGACCTGGTTCTCCCGCT---CTTCGTGAT--CATCTCCSizeHit CountTotal NormTotal
No Reads
droBia1
TAAG---GG----AGTGCAGTTCGAAGGG-GA------AATACGAGC---AG---CTAT-AA-TTCAA------CAGGTGAATAA-------------------GTCCG---AGCAAACTGTGACGTCACTA--ACGCCTT------CAAA----------TCGTCGCAATTT-CTAATTGCGTTTAAGCAAAAACCGGAGAGTC-G-------CAAGCTGAAAACAAAA---ACGGTC--CGCTGATAAGGGGG-----CTTAATG---AAAATGCATGCGCAATAGAGGAGATT-------------------------------------GTGGAT-CTGTAAATAAAATCCTCTTCAC-CCATCTATATTGCAGACATGAGGATCGTTTCGGTTCTGGTTCCCCTGCT---CTTGGGGAT--CATCTCCSizeHit CountTotal NormTotal
No Reads
droTak1
TAAGA--GG----AGTGCAGTTCGAAGGG-GA------AATACGAGA---GG---CAGC-AA-TTCAA------CAGGTGAATAA-------------------GTTCG---GGCTAACTGTGACGTCACAA--ACGCCTT------GAAA----------TCGTCGCAATTT-GTAATTGCGTTTAAGCAAAAACCACAGAGACAG-----A-AAAGTAGAAAACAAAA---AGTGTC--CGGTGATAAG--GT-----GTATATG--AAAAATGCATGCGCAATAGAGTAGATT-------------------------------------GTGGAA-CTCGAATTTTAATCAACTTCAT-CCATCTCTATTGCAGACATGAGGTTCCCTTGGGATCTGATTATCCTGCT---CCTGGGGAT--CATCTCTSizeHit CountTotal NormTotal
No Reads
droEle1
TAAGA--GG----AGTGCAGTCCGAATCG-GA------AATACGAGC---CG---CAAT-AA-TTCAA------CAGGTGAATAA-------------------GTCCG---TTCTGATTGTGACGTCACTA--AGGCCTA------AAAA----------TCGTCGCAATTT-CAAATTGCGTTTAAGACAA---------------------AAAGTTGAAAACAAAA---A--GTG--CCCTGATAGG--GA-----TCTAATT---AAAATGCATGCGCAGTAAAGCAGT-G--------------------------------------------CTCGAAACTAAGTGAACTTCAT-TCATCTACATTGCAGACATGAGGATCGGCTGGGCAGTGGTGCTGCTGCT---TTCGGGGAT--CATCTCCSizeHit CountTotal NormTotal
No Reads
droRho1
TAAGC--GG----AGTGCAGTCCGCAGGG-GA------AATACGAGC---GG---CAAC-AA-TTCCA------CAGGTGAATAA-------------------GTCCG---AGCTGATTGTGACGTCACTA--GCGCCTT------GAAA----------TCGTCGCAATTT-CAAATTGCGTTTAAGCAAAAACCAGAG--ACAA-------TAAGTAGAAAACAAAAAATA--GTG--TCCCGATAGG--GA-----TCCAATT---GAAATGCATGCGCAATAAAGCGGTAT--------------------------------------------CTCGAAATTAACCCAACT-----TCGTTTACATTGCAGAAATGAGAATCGCTT------TGGTTCTCCTGCT---CTTGGGGAT--CATCTCCSizeHit CountTotal NormTotal
No Reads
droFic1
TAAAACCCA----ACTGCATTTCGAAGGG-AA------AATACGAGC---CA---TAAT-AA-CTCAA------AAGGTGAATAA-------------------GTCCG---AGCTAATTGTGACGTCACTA--ACGCCTT------GAAA----------TCGTCGCAATTT-CGAATTGCGTTTAAGCAAAAGCCAGAGAGACAA-------TAACTTGAAAACAGAATACAATTTTAGCCCTGATAAGAGCG-----TGAAATG---AAAATGCATGCGCAATAGAGGAGAAT-------------------------------------CTGGATTGTGGAAATTTAATCAGCTTCAT-TCATCTATATTGCAGAAATGAGGATCGGATTGGAATTAGTTATCCTACT---TTTGGGATT--CCTCTCASizeHit CountTotal NormTotal
No Reads
droKik1
TAAGT--GC----AGTGCAGTTCGAAAGGGGA------AATACGAGT---GA---TTAA-AA-TCCAG------CAGGTGAATACTCAGTCATACATTGTGAAAGCCCA---AGCTGATAGTGACGTCACTA--GTGCCGT------GGAA----------TCGTCGCAGTTTATGAACTGCGTTTAAGCAGAGGCCAAAA--ACAG-----AAAAGGCTGAAA------------------------------------GCTAATGGAAGAATTGCCTGCGCAATAGGCC----------------------------------------------------TAAATTCAATCACCTTCCT-CCGTCTGTCTTACAGCAATGCGGATGGGCCTGGAGCTGGTTTGCCTGCTACTCCTGGCCAC--GGCCTCCSizeHit CountTotal NormTotal
No Reads
droAna3
TAAGT--CG----ATTGCAGTTCGAAAGG-TG---TATAATACGAGG---CA---CACAAAA-TCCAA------CAGGTGAATAG----------CTCGTGGAAACCCAACAAACAGTCTGTGATGTCACTA--GCCCCCT------GGAA----------TCGACGCAATTT-TAAACTGCGTTTAACCAAAAGTCCA-GAGACAA------------------CAA--AATAATTTC--AGCTGATAAG--TC-----GTTAATG---GCAGTGCCTGCGCATTAAAGTATAT--------------A-------------------------------------------------TAT-TCGTATTCCTTGCAGATATGGGGCTGTTTTTGTTGCTCGCTGGCCTCCT---ACTGGGCCT--GATCTCCSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
.........................................................................................................................................................................................................................................................................................................................................................................................GATATGGGGCTGTTTTTGTTGCTCGCC.............................2711.001010000
.AAGT--CG----ATTGCAGTTCGAAAGG-T..................................................................................................................................................................................................................................................................................................................................................................................................................2311.001000010
...GT--CG----ATTGCAGTTCGAAAGG-TG---T.............................................................................................................................................................................................................................................................................................................................................................................................................2311.001001000
droBip1
TAAGT--CG----ATTGCAGTTCGAAAGG-CG---TTTAGTTCGAGG---CA---CACAAAA-TCCAA------CAGGTGAATAG--------------------------------TCTGTGATGTCACTA--GCCCCCA------GGAA----------TCGACGCAATTT-TAAACTGCGTTTAACCAAAAGCCCA-GAGACAA------------------CAA--AATAATTTC--AGCTGATAAG--TC-----GTTAATG---AAAAGGCCTGCGCATTAATGTATAT--------------A-------------------------------------------------TAT-TCATATTCCTTGCAGATATGGGGTTGTTTTGGTTGCTCGCTAGCCTCCT---ACCCTGCCT--GATCTCCSizeHit CountTotal NormTotal
No Reads
dp5
TAACG--GGAGTGAGTGCACTGCGAAGAG-GA-GG---AATAACCCC---AA---CAGAAAT-CCCAA------CAGGTGAATAA----------ATCGTGTGAGTCCA---AGCGAGTAGTGACGTCACACAAGCGCCTTA-----CAAA----------TCGTCGCAATTT-CGAAGTGGA-----ACAGAACACAAAA--GCATTTTAAA------------TAAG-AATATTGTG--CGCTGATAAG--AGTGCGGTCCGATG---GAAATGCATGCGCAATAAG-TA--------GCACCAGGAAGACATCGATGAGAAAACGTATTGGCAGGT-GT-----TGTACTAGCATTCGTCTCGTCTCTCTTTTAGGCATGGGGCGAAGCCTGGAGCTGGTTCTGCTGCT---GCTGCAGCTGGGATCGCTSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
......................................................................................................................................................................................................................................................................................................................................................................................................GCCTGGAGCTGGTTCTGCT........................1913.0030300000000
......................................................................................................................................................................................................................................................................................................................................................................................................GCCTGGAGCTGGTTCTGCTG.......................2012.0020200000000
..........GTGAGTGCACTGCGAAGAG-GA-GG---...........................................................................................................................................................................................................................................................................................................................................................................................................2312.0020200000000
...................................................................................................................................................................................................................................................................................................................................................................................................GAAGCCTGGAGCTGGTTCTGCTG.......................2311.0010100000000
................GCACTGCGAAGAG-GA-GG---AAT........................................................................................................................................................................................................................................................................................................................................................................................................2011.0010100000000
........GAGTGAGTGCACTGCGAAGAG-G..................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010100000000
........................................................................................................GTCCA---AGCGAGTAGTGACGTCAC...............................................................................................................................................................................................................................................................................................................2311.0010100000000
................GCACTGCGAAGAG-GA-GG---A..........................................................................................................................................................................................................................................................................................................................................................................................................1811.0010100000000
....G--GGAGTGAGTGCACTGCG.........................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010100000000
..........................................................................................................................................................................................................................................................................................................................TCGATGAGAAAACGTATTGGCAGGT-GT-----......................................................................................2711.0010100000000
................................................................................................................................................................................................................................................................................................G-TA--------GCACCAGGAAGACATCGA...................................................................................................................2111.0010100000000
...................................................................................................................................................................................................................................................................................................................................................................................................GAAGCCTGGAGCTGGTTCTGCTGC......................2411.0010100000000
.........................................................................................................TCCA---AGCGAGTAGTGACGTCAC...............................................................................................................................................................................................................................................................................................................2211.0010000000001
.....................................................................................................................................................................................................................................................................................................................................................................................................AGCCTGGAGCTGGTTCTGCT........................2011.0010100000000
..............GTGCACTGCGAAGAG-GA-GG---AAT........................................................................................................................................................................................................................................................................................................................................................................................................2211.0010100000000
..................................................................................................GTGTGAGTCCA---AGCGAGTAGTGAC....................................................................................................................................................................................................................................................................................................................2411.0010010000000
...................................................................................................................................................................................................................................................................................................................................................................................................GAAGCCTGGAGCTGGTTCTGCT........................2211.0010100000000
...............TGCACTGCGAAGAG-GA-GG---AAT........................................................................................................................................................................................................................................................................................................................................................................................................2111.0010100000000
.........AGTGAGTGCACTGCGAAGAG-G..................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010100000000
..................ACTGCGAAGAG-GA-GG---AATAACCC...................................................................................................................................................................................................................................................................................................................................................................................................2311.0010100000000
..........GTGAGTGCACTGCGAAGAG-GA-GG---A..........................................................................................................................................................................................................................................................................................................................................................................................................2411.0010100000000
..................................................................................................................................................................................................................................................................................................................................................................................................CGAAGCCTGGAGCTGGTTCTGCTG.......................2411.0010100000000
..............................................................................................................................................................................................................................................................................................................................................................................................GGGGCGAAGCCTGGAGCTGGTTC............................2311.0010000100000
........GAGTGAGTGCACTGCGAAGAG-GA-GG---...........................................................................................................................................................................................................................................................................................................................................................................................................2511.0010100000000
..............................................................................................................................................................................................................................................................................................................................................................................................GGGGCGAAGCCTGGAGCT.................................1811.0010100000000
.............................................................................................................................................................................................................................................................................................................CACCAGGAAGACATCGATGAGA..............................................................................................................2211.0010100000000
...........................................................AAT-CCCAA------CAGGTGAATAA----------ATCGTGT...........................................................................................................................................................................................................................................................................................................................................2611.0010100000000
.........AGTGAGTGCACTGCGAAGAG-GA-GG---A..........................................................................................................................................................................................................................................................................................................................................................................................................2511.0010100000000
droPer2
TAACG--GGAGTGAGTGCACTGCGAAGAG-GA-GGAATAACCCGAACAACCCCAACAGAAAT-CCCAA------CAGGTGAATAA----------ATCGTGTGAGTCCA---AGCGAATAGTGACGTCACACAAGCGCCTTA-----CAAA----------TCGTCGCAATTT-CGAACTGGA-----ACAGAACACAAAA--GCAGTTTAAA------------TAAG-AATATTGTG--TGCTGATAAG--AGTGCGGTCCGATG---GAAATGCATGCGCAATAAG-TA--------GCACCAGGAAGACATCGATGAGAAAACGTATTGGCAGGT-GT-----TGTACTAGCATTCGTCTCGTCTCTCTTTTAGGCATGGGGCGAGGCCTGGAGCTGGTTCTGCTGCT---GCTGCAGCTGGGATCGCTSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
TAACG--GGAGTGAGTGCACTGC..........................................................................................................................................................................................................................................................................................................................................................................................................................2111.001010000
.........................................................................................................................................................................................................................................................................................................................................................................................................................GCT---GCTGCAGCTGGGATCG..1911.001001000
...............................A-GGAATAACCCGAACAACCCCAAC.........................................................................................................................................................................................................................................................................................................................................................................................2411.001010000
......................................................................................................GAGTCCA---AGCGAATAGTGACGTCACA..............................................................................................................................................................................................................................................................................................................2611.001010000
........................................................................................................................................................................................................................................................................................................................................................................................AGGCATGGGGCGAGGCCTGGT....................................2111.001010000
........GAGTGAGTGCACTGCGAAGAG-GA-GG..............................................................................................................................................................................................................................................................................................................................................................................................................2511.001000001
........GAGTGAGTGCACTGCGAAGAG-GA-G...............................................................................................................................................................................................................................................................................................................................................................................................................2411.001010000
................................................................................AATAA----------ATCGTGTGAGTCC.....................................................................................................................................................................................................................................................................................................................................1811.001010000
droWil2
TGAGT--GT------------GCCAAAAG-AG------ACTATATAC---TA---TA-------CAAAAATATGTATATGTATAG-------------------ATC-----------------------TAAAGCGGCTTAAATGTGAAT----------TCAACGCAATTT-CAAATTGCGTTCAATTGAAATAAAAAA--AAACCTTAAAAAA-------------------------AGTAAAGAA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
No Reads
droVir3
TAAGCTCTG----AGCGTTGTGGGATTAG-AA------AA----AGC---CATTACAAATTTTTCAAG------CAGGTGAATAA-------------------ATTCG---T----AGCGTGACGTCACTAATAAGCCAAAACTGCGAATTCGGGCTAAAGCGACGCAATTA-CCAAATGCGTATAAGCTAAAATCAAAT--ATATGTAAAAAAA-------------------------A-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
..AGCTCTG----AGCGTTGTGGGA........................................................................................................................................................................................................................................................................................................................................................................................................................1912.002000000000000000100100000000000000000000000000000000000000000000
............................................AGC---CATTACAAATTTTTCAAG------CAGGC..................................................................................................................................................................................................................................................................................................................................................................2611.001000100000000000000000000000000000000000000000000000000000000000
......CTG----AGCGTTGTGGGATTAG-AA------AA----AGC---...............................................................................................................................................................................................................................................................................................................................................................................................2611.001000000000000000000000000000000000000000000000000000000000000010
................GTTGTGGGATTAG-AA------AA----AGC---CAT............................................................................................................................................................................................................................................................................................................................................................................................2311.001000000000000001000000000000000000000000000000000000000000000000
droMoj3
G--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T---CTTGGCGGG--CCTCTTTSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
No Reads

Generated: 05/19/2015 at 01:22 PM