ID:

dsi_12655

 Coordinate:

3l:17227389-17227658 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-4.7 -4.6 -4.6

Flybase annnotation

CDS [3l_17227659_17227666_-]; five_prime_UTR [3l_17227667_17227746_-]; exon [3l_17227659_17227746_-]; exon [3l_17227025_17227388_-]; CDS [3l_17227025_17227388_-]; intron [3l_17227389_17227658_-]

No Repeatable elements found

Sense Strand Reads

##################################################------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
CATTACACATCCCATAAACACTCCCAAAAACCCATCAAAATTATGGTCAGGTATGCTGCACATCAACCCCGAATATTCCAAATTATTTATGTATCCCTAATTCCCAGTTCCAACCTGTTTAATTGTAAAATTATATTTTTCCAATATTTTCGATTTGTTCCTTGAATTTTTGTTTGAAATCTGTCAGCCTATATAAAATAATATCGTAAACTGCTTCTCAGTCTGTTGGAAAATTGTAATTTTATTGAATAAATTGTTCCCCCTACCACTTTGAAAGAAAGTTATAGTCAAACTAATAAGTGATTCGTGTCTTTTTGCAGTGTAAAGGTCAACGGAAACCCGCAGAATCGTTCAGTGAATAACGCAAAGG
************************************************************************************************************************************************************************************************************************************************************..................(((..((((((.((((((((..........))))).))).)))))).)))************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553485
Chicharo_3 day-old ovaries
 SRR553486
Makindu_3 day-old ovaries
 SRR618934
dsim w501 ovaries
 M023
head
 M025
embryo
 M053
female body
 SRR553487
NRT_0-2 hours eggs
 SRR553488
RT_0-2 hours eggs
 SRR902008
ovaries
 M024
male body
....................................................................................................................................................................................................................................................................................................................................................CGCAGAATCGTTCAGTGAATA......... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................................................................................................................................................................GAAACCCGCAGAATCGTTCAGTGAA........... 25 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0
.................................................................................................................................................................................................................................................................TCCCTCTACCACTTTGAAAGAA........................................................................................... 22 1 1 1.00 1 0 0 0 0 0 0 0 0 1 0
............................................................................................................................................................................................................................................................ATTGTTCCCCCTACCACTTTGAAAG............................................................................................. 25 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0
.............................................................................................................................................................................................................................................................................................................GATTCGTGTCTTTTTGCAG.................................................. 19 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0
.....................................................................................................................................................................................................................................................................................................................................AGGTCAACGGAAACCCGCAGAATCGTT.................. 27 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0
............................................................................................................................................................................................................................................................................................................................................CGGAAACCCGCAGAATCGTTCAGTGAA........... 27 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................AAAATAATATCGTAAACTGCTT.......................................................................................................................................................... 22 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0
...............................................CAGGTATGCTGCACATCAACC.............................................................................................................................................................................................................................................................................................................. 21 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0
.................................................................................................................................................................................................................................................................................................................................GTAAAGGTCAACGGAAAC............................... 18 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................................................................................................................................................................GCAGAATCGTTCAGTGAA........... 18 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................................................................................................................................................................GAAACCCGCAGAATCGTTCAGT.............. 22 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0
....................................................................................................................................................................................................................................................................................................................................................CGCAGAATCGTTCAGTGA............ 18 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0
....................................................................................................................................................................................................................GCTTCTCAGTCTGTTGGAAAATT....................................................................................................................................... 23 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0
..................................................................................................................................................................................................................................................................................................................................................CGCGCAGAATCGTTCAGTGA............ 20 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0
.....................................................................................................................TTTAATTGTAAAATT.............................................................................................................................................................................................................................................. 15 0 2 1.00 2 0 2 0 0 0 0 0 0 0 0
.......................................................................................................................................................TATCTGTTCCTTGAATTTTTTTTT................................................................................................................................................................................................... 24 3 4 0.50 2 0 0 0 0 0 0 2 0 0 0
.....................................................................................................................TTTAATTGTAAAATTA............................................................................................................................................................................................................................................. 16 0 2 0.50 1 0 1 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................................................................................................................................TTGGCAGTGTAGAGGTC........................................ 17 2 11 0.18 2 0 0 0 0 0 0 2 0 0 0
...................................................TATGCTGGACAAGAACCCCG........................................................................................................................................................................................................................................................................................................... 20 3 9 0.11 1 0 0 0 0 0 0 1 0 0 0
..........................................TAGGTCAGGTATGTTGCAC..................................................................................................................................................................................................................................................................................................................... 19 3 11 0.09 1 0 0 0 0 0 0 0 0 0 1
............................................................................................................................................................................TTTGAATCCTGTCAGCC..................................................................................................................................................................................... 17 2 16 0.06 1 0 0 0 0 0 0 0 1 0 0
..........................................................................................................................................................................................................................................................................................................................CTGCGGTGTAAAGGTCTA...................................... 18 3 20 0.05 1 0 0 1 0 0 0 0 0 0 0
.....................................................................................................CCCTAGTTCCAACCAGTT........................................................................................................................................................................................................................................................... 18 3 20 0.05 1 0 0 1 0 0 0 0 0 0 0
................................................................................................................................................................................................................................GTTGGAAAATTGGAAT.................................................................................................................................. 16 1 20 0.05 1 0 0 0 0 0 0 1 0 0 0
.....................................................................................................................................................................................................................................................................CCTACCACGTTGAAAA............................................................................................. 16 2 20 0.05 1 1 0 0 0 0 0 0 0 0 0

Anti-sense strand reads

GTAATGTGTAGGGTATTTGTGAGGGTTTTTGGGTAGTTTTAATACCAGTCCATACGACGTGTAGTTGGGGCTTATAAGGTTTAATAAATACATAGGGATTAAGGGTCAAGGTTGGACAAATTAACATTTTAATATAAAAAGGTTATAAAAGCTAAACAAGGAACTTAAAAACAAACTTTAGACAGTCGGATATATTTTATTATAGCATTTGACGAAGAGTCAGACAACCTTTTAACATTAAAATAACTTATTTAACAAGGGGGATGGTGAAACTTTCTTTCAATATCAGTTTGATTATTCACTAAGCACAGAAAAACGTCACATTTCCAGTTGCCTTTGGGCGTCTTAGCAAGTCACTTATTGCGTTTCC
**************************************************..................(((..((((((.((((((((..........))))).))).)))))).)))************************************************************************************************************************************************************************************************************************************************************ 		Read size # Mismatch Hit Count Total Norm Total GSM343915
embryo
 SRR618934
dsim w501 ovaries
 O002
Head
 SRR902009
testis
 SRR902008
ovaries
 M024
male body		 SRR553488
RT_0-2 hours eggs
 SRR553485
Chicharo_3 day-old ovaries
 SRR553487
NRT_0-2 hours eggs
 SRR1275487
Male larvae		 SRR553486
Makindu_3 day-old ovaries
................................................................................................................................................................................................................................................................................................................AGCACAGAAAAACGTCAC................................................ 18 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................................................................................................................................TGTTCACTAAGATCAGAAAAAC..................................................... 22 3 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
.........................TTTTTGGGTAGTATTAATAGGAGT................................................................................................................................................................................................................................................................................................................................. 24 3 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0
.....................AGGGTTTGTGGGTAGTTGTCATA...................................................................................................................................................................................................................................................................................................................................... 23 3 2 0.50 1 0 1 0 0 0 0 0 0 0 0 0
..................................................................................................................................................AAAAGCTACACAAGGACCT............................................................................................................................................................................................................. 19 2 3 0.33 1 0 0 0 0 1 0 0 0 0 0 0
..............................................................................................................................................................................................................................................................................................................................TCATATTTCAAGTTGCCT.................................. 18 2 3 0.33 1 0 1 0 0 0 0 0 0 0 0 0
..............................................................................................GGGATTAAGGGGCAA..................................................................................................................................................................................................................................................................... 15 1 17 0.18 3 0 0 0 0 0 0 1 0 2 0 0
...........................................................................................................................................................................CAAAGTTTAGACAGTCGC..................................................................................................................................................................................... 18 2 6 0.17 1 0 0 0 0 0 1 0 0 0 0 0
..............................................................................................GGGAATAAGGGTCAA..................................................................................................................................................................................................................................................................... 15 1 7 0.14 1 0 1 0 0 0 0 0 0 0 0 0
.....................AGGATTTTTGGGTAG.............................................................................................................................................................................................................................................................................................................................................. 15 1 14 0.14 2 0 0 0 0 0 0 0 2 0 0 0
........................................................................................................................................................................AAACAGACTTTAGACA.......................................................................................................................................................................................... 16 1 10 0.10 1 0 0 0 0 0 0 1 0 0 0 0
...................................................................GGGCTCTTAAGGTTTACTAA........................................................................................................................................................................................................................................................................................... 20 3 10 0.10 1 0 0 0 0 0 1 0 0 0 0 0
....................................................................................................AAGGGGCAACGTTGGACCA........................................................................................................................................................................................................................................................... 19 3 13 0.08 1 1 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................AAAAAAAATTTAGACAGT........................................................................................................................................................................................ 18 2 20 0.05 1 0 0 0 0 0 0 0 0 0 0 1
...ATGCGTATGGTATTTGT.............................................................................................................................................................................................................................................................................................................................................................. 17 2 20 0.05 1 0 1 0 0 0 0 0 0 0 0 0
................................................................................................................................................................................GTTAGACAGTCGGATGTG................................................................................................................................................................................ 18 3 20 0.05 1 0 0 0 0 0 0 1 0 0 0 0
............................................................................................TTGGGAATAAGGGTCAA..................................................................................................................................................................................................................................................................... 17 2 20 0.05 1 0 0 0 0 0 0 0 0 0 1 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim2 3l:17227339-17227708 - dsi_12655 CATTACACATCCCATAA-A--CAC--TC------CCA---------------AAAACCCATCA-AAATTATGGTCAGGTATGCTG--CACAT--------CAACCCC-GAATATTCCAAATTATTTATGTATCCCTAATTCCCAG-TTCC--AACC---TGT-----------TTA---ATTGTAAAATTATATTTTTCCAA-------------------------------------------------------------------------------TATTTTCGATTTGTTCC--------------------------------------T-TGA-ATTTTTGTTTGAAA-------------------------------------------------TCTGTCAGCCT-------------------ATATAAAATAATAT----------CGTA--------------------AACTGCTTCTCAGTCTGTTGGAAAATTGTAATTTTATTGAATAAATTGTTCC---------------------------CCCTA---CCACT------TTGAAAGAA-----AGTTATAGTCAAACTAATAAGTGATTCGTGTCTTTTTGCAGTGTAAAGGTCAACGGAAACCCGCAGAATCGTTCAGTGAA---TA---------------ACGCAAAGG
droSec2 scaffold_0:9682870-9683251 - CATTACACATCCCATAA-A--CAC--TC------CCAAAAA-CC-ACAAAAAAAAACCCATCA-AAATTATGGTCAGGTATGCTG--CACAT--------CAACCCC-GAATATTCCAAATTATTTATGTATCCCTGGTTCCCAA-TTCC--AACC---TGT-----------TTA---ATTGTAAAATTATATTTTTCCAA-------------------------------------------------------------------------------TATTTTCGATTTGTTCC--------------------------------------T-TAA-ATTTTTGTTTGAAA-------------------------------------------------TCTGTCACCCT-------------------ATATAAAATAATAT----------CGTA--------------------AAATGCTTCTCAGTCTGTTGGAAAATTATAATTTT-TTGAATAAATTTGTCC---------------------------CCCTA---TCACT------TTGAAAGAA-----AGTTATAGTCAAACTAATAAGTGATTCGTGTCTTTTTGCAGCGTAAAGGTCAACGGAAACCAGCAGAATCGTTCAGTGAA---TA---------------ACGCAAAGG
dm3 chr3L:17636777-17637141 - CATTACACATCCCATAA-A--CAC--TC------CCAAAAA-CA-GCAAAAAAAAACCCATCA-AAATTATGGTCAGGTATGCTG--CACAT--------CAACCCC-GAATATTCGAAATTATTTATGTATCCCTAGTTCCCAA-TTCC--AACG---TGA-----------TTA---ATTATAAAATTATATTTTTCCAA-------------------------------------------------------------------------------TATTGTCGATATGTTC-------------------------------------------------TTGTTTAAAA-------------------------------------------------ATTGTCAGCTT-------------------ATGTAGAATAATAT----------------------------ATCTTAAACT-----------GCTTGGAAAATTATAATTTTATTGAATAAATTTGTCC---------------------------CCCTA---CCGCT------TCGAAAGAA-----AGTTATAGTTATACTGATAAGTGAATCATGTCTTTTTGCAGCGTAAAGGTCAACGGAAATCCGCAGAATCGTTTAGTGAA---TA---------------ACGCAAAGG
droEre2 scaffold_4784:16217357-16217793 + CATTACACATCCCATAA-A--CTC--TC------CCACAAAACCA------AAAAACCCATCA-AAATTATGGTCAGGTATGCTG--CACAT--------CAACCCC-GAAAATTTGAAATTATTTATGTATCCCAGGTTCCCAA-CTCC--AACC---CTA-----------TTACCGTTTATAAAATTCTATTTTTCCAATTATCTGTTA-AATATTTTATTA--------------------------------------------------------------AAATTTGTTTT--------------------------------------T-TGA-ATGTTTATAAAAAA------------AATAATATTGTACATC------------CATCACATAGTTGCCAGGCTAAGC--------AATTCATAAATAAAATAATAT----------TGTA--------------------AAAGTCAAAACAGTCACTCGGAAAAGTAAAATTTTATTGAATAAAGTGGTCC---------------------------CCCTATAATCACC------TTGAAAGAA-----AGTTATAGTAATACTAATGATTATTTTATATACTTATGCAGCGTAAAGGTCAACGGAAATCAGCAGAATCGTTTAGTAAA---TA---------------ACGCAAAGG
droYak3 3L:16418534-16418920 + CATTACACATCCCAAAA-A--CTC--TC------CCACAAAACCA---AAAAAAAACCCATCA-AAATTATGGTCAGGTATGCTG--CACAT--------CAACCCC-GAAAATTCTAAATTATTTATGTATCCCATGTTCCCAA-CTCC--AACC---CGA-----------TAACCGCTTATAAAATTATATTTTTCCAATTATCTGTT----------------------------------------------------------------------------------G-----------------------ATAAACAAAAATAATTTTTT-TGAAATTGTTGTA---------------------------------------------TATGACATAGTTGTCAAGCTGAATGAC-------------------------------------------------------------------ACAGAGTGACTTGGAAAAGTAAAATTTTATTGATTAAAGTTGTTT---------------------------CCCCATAAAAACA------TCGAAAGAA-----AGTTATAGTAATACTAATAAGGGTTTCATCTTTTTATGCAGCGTAAAGGTCAACGGAAATCCGCAGAATCGTTTGGGAAA---TA---------------ACGCAAAGG
droEug1 scf7180000409471:1926535-1926998 + CATTACACATCCCATAA-AAACAA--TC------CCACAAAATCA-------AAAACCCATCA-AAATTATGGTCAGGTATGCTG--CACAT--------CAACCCC-AAAAAACACTAATTATTTATGTATCTCCTTTTTTCAAGAACC--A-AA---CGT-----------TTTCCGCTTCTAAAATTATACTTTTTTAAGCCATTGTTAGAATATTTAAAGTAATTTTGATATAAAAAAACACAAGCAAATGTGTAAATAACGGCTTAAAAATGTATATACTTGCGAATTAGTCATTTATATTTTGTGAAAGTGATAAACAAAATTCTTGTTTTGCGA-ATT----------------------------------------------------------------------------------------------------ATTT----------TATA--------------------AAAGGTTTCGAAGT-TCTTGGATTATTATAATTTT---------------CC---------------------------CAATA---AAACCTATATATCGAAATCAGCTGTATTTATAGATTCACTAATTAGTTTATCTTATCTTCTTGCAGCGTAAAGGTCAACGGAAATCCCCAGAATCGTTTAGTGAA---TA---------------CCCAAAAGG
droBia1 scf7180000302193:939812-940275 - CCTTACACCTCCCAAA--A--CTC--AC------CCACCAAACCA---------AACCCATCA-AAATTATGGTCAGGTATGCTG--CACTT--------CAACCCT-GAAAACGCCACA-TCTTTATGTATCTCCTGTTCCCAG-AGCCGAA-CC--CCCA-----------TATCGCTCTCTAAAGTTGTACTTTTCCAAGGAACTATTGTAAT------------------------------------------------------------------------------------------------------------------------------ATTTGTGTTAGAGTAGAGACTATAATTATAATAATCTACATTACTTTTTTATTTTATGCCATATTTTCAATGTTCCATGTCAAAGATATTAGTAAATAGCTGAATTTTTATTAAAAATATAAAAGTTCTTCCTTG----TAT-ACTCGAGT-ATGTACCTGGAAAAGTATAATTTT-TAGGCCAACTTCTCTCCTGTATAACAAAAAGTTTTACTTAAAGACCTG---C-----------------------------------CTCTAATTGCTTTCCCAAA--TCTTTGCAGCGTAAAGGTCAACGGAGCTCCACAGAATCGTTTAGGGAT---CA---------------ACCCAAAGG
droTak1 scf7180000415409:404410-404611 - TTTTAAATATCCCTATT-A---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A-ATTTGTGTACGAAA----------------------------------------------------------------------------------AAAAGTAAAAT----------CA----------------------AAACATTTCTTAAAGACCTGGAAAAGTATAATTTTATTGATCAACATATTCT---------------------------CCATA---AGACT------ATGGA--------------AAGTCTTGCTAATAAGTTTCTCCAATCTTTTTGCAGCGTTAAGGTCAACGGAAATCCCCAGAATCGCTTAGGAAATAATA---------------ACCCAAAGG
droEle1 scf7180000490993:564882-565031 - CATAACACATCCCAT-----------TC------CCACCAAACCA-------AAAATCCATCA-AAATTATGGTCAGGTATGCTG--CACAT--------CAACCCCCAAAAATTCCTAATTATTTATGTATCTCCTGTTCTAAA-ATCC--AGAC---TGA-----------TTTCCGTTTATAAAAATATATTTTTCCAA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droRho1 scf7180000772074:12673-12819 - CATAACACATCCCATAA-A--CTC--TC------CCACAAAACCA-------AAAACCCATCA-AAATTATGGTCAGGTATGGTG--CACAT--------CAACCCCCAAAAATTGCTTGTTATTTATGTATCTCCTGTTCTC------------C---TAA-----------GTTCCATTTATAAAAATATATTTTTCCAA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droFic1 scf7180000454107:1218839-1218994 - CATTTCACATCCCATAA-A--CTC--TC------CCACAAAACCA-------AACACCCTCCA-AAATTATGGTCAGGTATGCTG--CACAT--------CATCCCCCGAAAATCCAAAATTATTTATGTATCTCCTGCTTGAAA-TTAA--AAAC---CCA-----------TTTGCGCTTATAAGATTATATTTTTCCAA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droKik1 scf7180000302351:256706-256812 + AATAAAGCATCCCACAAAA--CTC--TC------CTA---------------AAAACCCATCA-AAATTATGGTCAGGTATGCTGTGCACAT-TC---ACCATCCCC-GAAAC-------------------------------------AAT---CCTTAAT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATT---------------CC---------------------------CAAT----------------------------------------------------------------------------------------TCCTCA--------------------------------------------
droAna3 scaffold_13337:14340622-14340688 - AAAAACCCATCTCAACC-A---TA--TCACAT--CCCAA-------------ATCCCTAAAAA-AAATTATGGTCAGGTATGCAG--CACA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droBip1 scf7180000396641:942170-942244 + CATATCACATCCATCAA-C---------------CCCCAATCCC-----TAAACCACCCATCA-AAATTATGGTCAGGTATGCAG--CGCAT--------TAGCACC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
dp5 XR_group6:3876159-3876233 + ACACACACATCCCAAAA-A--ATCCCAA------CCACTTAACCC---AATAGTAGCTCATCA-GAATTATGGTCAGGTATGATT--CAC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droPer2 scaffold_9:2167660-2167735 + ACACACACATCCCAAAA-A--ATC--CC--A---CCACTTAACCC--AAATAGTAGCTCATCAGAAATTATGGTCAGGTATGATT--CAC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droWil2 scf2_1100000004762:1478380-1478505 - AAAAATCCATCAAATAA-A--AAA--AAATATCCCAAATTA-TC-CTCGTAAATCCTCCATCA-AAATTATGGTCAGGTATGCGT--TATGT--------CGTCTCC-TTATGT----CGTTCTCTCTGTTTCTCTCTCTCTCTG-TCCC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droVir3 scaffold_13049:6793952-6794023 + TGTCTTT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTATTGCAGCGTTAAGGTCAA------TCCGCAACAACAATTACAACA---GTCACGTCCAGCACATTAT---TTGG
droMoj3 scaffold_6680:5126058-5126127 + TTTTA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTGCAGCGTTAAGGTCAACGTAAATCCGCAACAACAACAACTGCA---TTCGCGTCCAGCACAC------TTGA
droGri2 scaffold_15110:6001496-6001621 - CAATACATATTCCTATA-T---CA--TC------CCACA-----------CAAACTCCCATTC-AAATTATGGTCAGGTATGCCA--AGCGTTTCACAAACATCCAC-ACAAG-------------------------------------GAT---ACTGAATATATTTCCATATTCATTTTATATACA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAAT

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
CATTACACATCCCATAA-A--CAC--TC------CCA---------------AAAACCCATCA-AAATTATGGTCAGGTATGCTG--CACAT--------CAACCCC-GAATATTCCAAATTATTTATGTATCCCTAATTCCCAG-TTCC--AACC---TGT-----------TTA---ATTGTAAAATTATATTTTTCCAA-------------------------------------------------------------------------------TATTTTCGATTTGTTCC--------------------------------------T-TGA-ATTTTTGTTTGAAA-------------------------------------------------TCTGTCAGCCT-------------------ATATAAAATAATAT----------CGTA--------------------AACTGCTTCTCAGTCTGTTGGAAAATTGTAATTTTATTGAATAAATTGTTCC---------------------------CCCTA---CCACT------TTGAAAGAA-----AGTTATAGTCAAACTAATAAGTGATTCGTGTCTTTTTGCAGTGTAAAGGTCAACGGAAACCCGCAGAATCGTTCAGTGAA---TA---------------ACGCAAAGGSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGCAGAATCGTTCAGTGAA---TA---------------.........2111.00100000010000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAACCCGCAGAATCGTTCAGTGAA---..........................2511.00100000000100000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGTTCC---------------------------CCCTA---CCACT------TTGAAAG....................................................................................................................2511.00100010000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTCGTGTCTTTTTGCAG....................................................................1911.00100000000001000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGTCAACGGAAACCCGCAGAATCGTT....................................2711.00100000000010000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGGAAACCCGCAGAATCGTTCAGTGAA---..........................2711.00100000001000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAATAATAT----------CGTA--------------------AACTGCTT.....................................................................................................................................................................................................................2211.00110000000000000000
..........................................................................CAGGTATGCTG--CACAT--------CAACC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00110000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAAAGGTCAACGGAAAC.................................................1811.00100000010000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGAATCGTTCAGTGAA---..........................1811.00100000010000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAACCCGCAGAATCGTTCAGT................................2211.00100010000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGCAGAATCGTTCAGTGA..............................1811.00100100000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTTCTCAGTCTGTTGGAAAATT..................................................................................................................................................................................................2311.00100100000000000000
.................................................................................................................................................................T-----------TTA---ATTGTAAAATT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1521.00200000002000000000
.................................................................................................................................................................T-----------TTA---ATTGTAAAATTA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1620.50100000001000000000
droSec2
CATTACACATCCCATAA-A--CAC--TC------CCAAAAA-CC-ACAAAAAAAAACCCATCA-AAATTATGGTCAGGTATGCTG--CACAT--------CAACCCC-GAATATTCCAAATTATTTATGTATCCCTGGTTCCCAA-TTCC--AACC---TGT-----------TTA---ATTGTAAAATTATATTTTTCCAA-------------------------------------------------------------------------------TATTTTCGATTTGTTCC--------------------------------------T-TAA-ATTTTTGTTTGAAA-------------------------------------------------TCTGTCACCCT-------------------ATATAAAATAATAT----------CGTA--------------------AAATGCTTCTCAGTCTGTTGGAAAATTATAATTTT-TTGAATAAATTTGTCC---------------------------CCCTA---TCACT------TTGAAAGAA-----AGTTATAGTCAAACTAATAAGTGATTCGTGTCTTTTTGCAGCGTAAAGGTCAACGGAAACCAGCAGAATCGTTCAGTGAA---TA---------------ACGCAAAGGSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACCAGCAGAATCGTTCAGTGAA---TA---------------AC.......2711.0010010
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACGGAAACCAGCAGAATC.......................................1811.0010010
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGTGATTCGTGTCTTTTTGCA.....................................................................2211.0010100
dm3
CATTACACATCCCATAA-A--CAC--TC------CCAAAAA-CA-GCAAAAAAAAACCCATCA-AAATTATGGTCAGGTATGCTG--CACAT--------CAACCCC-GAATATTCGAAATTATTTATGTATCCCTAGTTCCCAA-TTCC--AACG---TGA-----------TTA---ATTATAAAATTATATTTTTCCAA-------------------------------------------------------------------------------TATTGTCGATATGTTC-------------------------------------------------TTGTTTAAAA-------------------------------------------------ATTGTCAGCTT-------------------ATGTAGAATAATAT----------------------------ATCTTAAACT-----------GCTTGGAAAATTATAATTTTATTGAATAAATTTGTCC---------------------------CCCTA---CCGCT------TCGAAAGAA-----AGTTATAGTTATACTGATAAGTGAATCATGTCTTTTTGCAGCGTAAAGGTCAACGGAAATCCGCAGAATCGTTTAGTGAA---TA---------------ACGCAAAGGSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
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.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAAAGGTCAACGGAAATCCGC.............................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................AAATTATGGTCAGGTATGCT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTTATACTGATAAGTGAA....................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCCGCAGAATCGTTTAGTGAA---TA---------------ACGC.....2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
.......................................................................................................................................................................................................................................................................................................................................................................................................................TGTCAGCTT-------------------ATGTAGAATAATAT----------------------------ATCTT..............................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCGCAGAATCGTTTAGTGA..............................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGAATCGTTTAGTGAA---TA---------------AC.......2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTTTTTGCAGCGTAAAGGTCAACGGAAA..................................................2911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCAACGGAAATCCGCAGAATC.......................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAGTGAA---TA---------------ACGCAAAGG1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000
droEre2
CATTACACATCCCATAA-A--CTC--TC------CCACAAAACCA------AAAAACCCATCA-AAATTATGGTCAGGTATGCTG--CACAT--------CAACCCC-GAAAATTTGAAATTATTTATGTATCCCAGGTTCCCAA-CTCC--AACC---CTA-----------TTACCGTTTATAAAATTCTATTTTTCCAATTATCTGTTA-AATATTTTATTA--------------------------------------------------------------AAATTTGTTTT--------------------------------------T-TGA-ATGTTTATAAAAAA------------AATAATATTGTACATC------------CATCACATAGTTGCCAGGCTAAGC--------AATTCATAAATAAAATAATAT----------TGTA--------------------AAAGTCAAAACAGTCACTCGGAAAAGTAAAATTTTATTGAATAAAGTGGTCC---------------------------CCCTATAATCACC------TTGAAAGAA-----AGTTATAGTAATACTAATGATTATTTTATATACTTATGCAGCGTAAAGGTCAACGGAAATCAGCAGAATCGTTTAGTAAA---TA---------------ACGCAAAGGSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTCACTCGGAAAAGTAAAAT.............................................................................................................................................................................................2111.0010000010
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAGAATCGTTTAGTAAA---T.........................2011.0010000100
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGGTCAACGGAAATCAGC.............................................2011.0010000010
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATCAGCAGAATCGTTTAGTAAA---TA---------------.........2511.0010000010
droYak3
CATTACACATCCCAAAA-A--CTC--TC------CCACAAAACCA---AAAAAAAACCCATCA-AAATTATGGTCAGGTATGCTG--CACAT--------CAACCCC-GAAAATTCTAAATTATTTATGTATCCCATGTTCCCAA-CTCC--AACC---CGA-----------TAACCGCTTATAAAATTATATTTTTCCAATTATCTGTT----------------------------------------------------------------------------------G-----------------------ATAAACAAAAATAATTTTTT-TGAAATTGTTGTA---------------------------------------------TATGACATAGTTGTCAAGCTGAATGAC-------------------------------------------------------------------ACAGAGTGACTTGGAAAAGTAAAATTTTATTGATTAAAGTTGTTT---------------------------CCCCATAAAAACA------TCGAAAGAA-----AGTTATAGTAATACTAATAAGGGTTTCATCTTTTTATGCAGCGTAAAGGTCAACGGAAATCCGCAGAATCGTTTGGGAAA---TA---------------ACGCAAAGGSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGCAGAATCGTTTGGGAAA---TA---------------AC.......2311.00110000000000
.........................................................................................................................................................................................................................................................................................................................................................GTTGTA---------------------------------------------TATGACATAGTTGTCAAGCT................................................................................................................................................................................................................................................................................................2611.00100000010000
....................................................................................................................................................................................................................................................................................................................................................AAATTGTTGTA---------------------------------------------TATGACATAGTTGTC.....................................................................................................................................................................................................................................................................................................2611.00100100000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGTAAAGGTCAACGGAAATCC...............................................2111.00101000000000
................................................................AAATTATGGTCAGGTATGCTG--C........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.00100100000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACGGAAATCCGCAGAATCGTTT...................................2411.00100000010000
droEug1
CATTACACATCCCATAA-AAACAA--TC------CCACAAAATCA-------AAAACCCATCA-AAATTATGGTCAGGTATGCTG--CACAT--------CAACCCC-AAAAAACACTAATTATTTATGTATCTCCTTTTTTCAAGAACC--A-AA---CGT-----------TTTCCGCTTCTAAAATTATACTTTTTTAAGCCATTGTTAGAATATTTAAAGTAATTTTGATATAAAAAAACACAAGCAAATGTGTAAATAACGGCTTAAAAATGTATATACTTGCGAATTAGTCATTTATATTTTGTGAAAGTGATAAACAAAATTCTTGTTTTGCGA-ATT----------------------------------------------------------------------------------------------------ATTT----------TATA--------------------AAAGGTTTCGAAGT-TCTTGGATTATTATAATTTT---------------CC---------------------------CAATA---AAACCTATATATCGAAATCAGCTGTATTTATAGATTCACTAATTAGTTTATCTTATCTTCTTGCAGCGTAAAGGTCAACGGAAATCCCCAGAATCGTTTAGTGAA---TA---------------CCCAAAAGGSizeHit CountTotal NormTotal
No Reads
droBia1
CCTTACACCTCCCAAA--A--CTC--AC------CCACCAAACCA---------AACCCATCA-AAATTATGGTCAGGTATGCTG--CACTT--------CAACCCT-GAAAACGCCACA-TCTTTATGTATCTCCTGTTCCCAG-AGCCGAA-CC--CCCA-----------TATCGCTCTCTAAAGTTGTACTTTTCCAAGGAACTATTGTAAT------------------------------------------------------------------------------------------------------------------------------ATTTGTGTTAGAGTAGAGACTATAATTATAATAATCTACATTACTTTTTTATTTTATGCCATATTTTCAATGTTCCATGTCAAAGATATTAGTAAATAGCTGAATTTTTATTAAAAATATAAAAGTTCTTCCTTG----TAT-ACTCGAGT-ATGTACCTGGAAAAGTATAATTTT-TAGGCCAACTTCTCTCCTGTATAACAAAAAGTTTTACTTAAAGACCTG---C-----------------------------------CTCTAATTGCTTTCCCAAA--TCTTTGCAGCGTAAAGGTCAACGGAGCTCCACAGAATCGTTTAGGGAT---CA---------------ACCCAAAGGSizeHit CountTotal NormTotal
No Reads
droTak1
TTTTAAATATCCCTATT-A---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A-ATTTGTGTACGAAA----------------------------------------------------------------------------------AAAAGTAAAAT----------CA----------------------AAACATTTCTTAAAGACCTGGAAAAGTATAATTTTATTGATCAACATATTCT---------------------------CCATA---AGACT------ATGGA--------------AAGTCTTGCTAATAAGTTTCTCCAATCTTTTTGCAGCGTTAAGGTCAACGGAAATCCCCAGAATCGCTTAGGAAATAATA---------------ACCCAAAGGSizeHit CountTotal NormTotal
No Reads
droEle1
CATAACACATCCCAT-----------TC------CCACCAAACCA-------AAAATCCATCA-AAATTATGGTCAGGTATGCTG--CACAT--------CAACCCCCAAAAATTCCTAATTATTTATGTATCTCCTGTTCTAAA-ATCC--AGAC---TGA-----------TTTCCGTTTATAAAAATATATTTTTCCAA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droRho1
CATAACACATCCCATAA-A--CTC--TC------CCACAAAACCA-------AAAACCCATCA-AAATTATGGTCAGGTATGGTG--CACAT--------CAACCCCCAAAAATTGCTTGTTATTTATGTATCTCCTGTTCTC------------C---TAA-----------GTTCCATTTATAAAAATATATTTTTCCAA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droFic1
CATTTCACATCCCATAA-A--CTC--TC------CCACAAAACCA-------AACACCCTCCA-AAATTATGGTCAGGTATGCTG--CACAT--------CATCCCCCGAAAATCCAAAATTATTTATGTATCTCCTGCTTGAAA-TTAA--AAAC---CCA-----------TTTGCGCTTATAAGATTATATTTTTCCAA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droKik1
AATAAAGCATCCCACAAAA--CTC--TC------CTA---------------AAAACCCATCA-AAATTATGGTCAGGTATGCTGTGCACAT-TC---ACCATCCCC-GAAAC-------------------------------------AAT---CCTTAAT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATT---------------CC---------------------------CAAT----------------------------------------------------------------------------------------TCCTCA--------------------------------------------SizeHit CountTotal NormTotal
No Reads
droAna3
AAAAACCCATCTCAACC-A---TA--TCACAT--CCCAA-------------ATCCCTAAAAA-AAATTATGGTCAGGTATGCAG--CACA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
No Reads
droBip1
CATATCACATCCATCAA-C---------------CCCCAATCCC-----TAAACCACCCATCA-AAATTATGGTCAGGTATGCAG--CGCAT--------TAGCACC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
dp5
ACACACACATCCCAAAA-A--ATCCCAA------CCACTTAACCC---AATAGTAGCTCATCA-GAATTATGGTCAGGTATGATT--CAC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
....ACACATCCCAAAA-A--ATCCCAA------CC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010010000000
droPer2
ACACACACATCCCAAAA-A--ATC--CC--A---CCACTTAACCC--AAATAGTAGCTCATCAGAAATTATGGTCAGGTATGATT--CAC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
..................................................................ATTATGGTCAGGTATGATT--.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001100000
droWil2
AAAAATCCATCAAATAA-A--AAA--AAATATCCCAAATTA-TC-CTCGTAAATCCTCCATCA-AAATTATGGTCAGGTATGCGT--TATGT--------CGTCTCC-TTATGT----CGTTCTCTCTGTTTCTCTCTCTCTCTG-TCCC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
..................................................................ATTATGGTCAGGTATGCGT--.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00100010
droVir3
TGTCTTT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTATTGCAGCGTTAAGGTCAA------TCCGCAACAACAATTACAACA---GTCACGTCCAGCACATTAT---TTGGSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAATTACAACA---GTCACGTCCAGCACA...........2711.001000000000000000000000000001000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAACAATTACAACA---GTCACGTCC.................2411.001000000000000000000000000000000001000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAA------TCCGCAACAACAATTACAACA---GT........................2611.001000000000000000001000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AA------TCCGCAACAACAATTACAA...............................2111.001000000000000000001000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAATTACAACA---GTCACGTCC.................2011.001000000000000000000000000000000000010000000000000000000000000000
....TTT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTATTGCAGCGTTAAGGTC..........................................................2211.001001000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACA---GTCACGTCCAGCAC............1811.001000100000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAAGGTCAA------TCCGCAACAACA......................................2111.001001000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGCAACAACAATTACAACA---GTCAC.....................2411.001000000000000001000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGTTAAGGTCAA------TCCGCAAC..........................................2011.001000000000000000100000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTACAACA---GTCACGTCCAGCACA...........2411.001001000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTACAACA---GTCACGTCCAG...............2011.001001000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGTTAAGGTCAA------TCCGCAACA.........................................2111.001000000000000000000000010000000000000000000000000000000000000000
droMoj3
TTTTA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTGCAGCGTTAAGGTCAACGTAAATCCGCAACAACAACAACTGCA---TTCGCGTCCAGCACAC------TTGASizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAACAACTGCA---TTCGCGTCC.................2111.001000010
droGri2
CAATACATATTCCTATA-T---CA--TC------CCACA-----------CAAACTCCCATTC-AAATTATGGTCAGGTATGCCA--AGCGTTTCACAAACATCCAC-ACAAG-------------------------------------GAT---ACTGAATATATTTCCATATTCATTTTATATACA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAATSizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads

Generated: 05/18/2015 at 11:35 AM