ID:

dsi_12592

 Coordinate:

3l:16382825-16382974 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

Flybase annnotation

CDS [3l_16382975_16383102_-]; exon [3l_16382975_16383102_-]; intron [3l_16380075_16382974_-]

No Repeatable elements found

Sense Strand Reads

##################################################--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
GGCGCTGGCGTCTTGGCTTCCATTCCTCACGGACTCTACTCCAAGGCACTGTAAGTATCACTAATATATATAACATCTATATAGATATAGTATCGAATATACATATGTTTATTTGTGCCGGTTCCTCTGGCGCCGTCGCCATTGATGAACGAACTGCTTACACGGAACACGGGACTTGTTGGTGGGCAGGGGGAGCGATATCGCCGTGATCTCGTGCGCGAAATACGAAAATAGCTCAAAGCTGCCTTGT
**************************************************....(((((.....((((((.......))))))))))).(((.((((((.((....)).)))))))))..((((((((((((....)))))............((((((((.((..(((.......))))))))))))))))))))....************************************************** 		Read size # Mismatch Hit Count Total Norm Total M023
head
 M024
male body		 M025
embryo
 M053
female body
 O002
Head
 SRR902009
testis
 SRR553486
Makindu_3 day-old ovaries
 SRR553488
RT_0-2 hours eggs
 SRR618934
dsim w501 ovaries
.....................ATTCCTCACGGACTCTACT.................................................................................................................................................................................................................. 19 0 1 2.00 2 0 2 0 0 0 0 0 0 0
...................CCATTCCTCACGGACTCTACTCCAAGG............................................................................................................................................................................................................ 27 0 1 1.00 1 0 0 0 1 0 0 0 0 0
...........................................................................TCTATATAGGTATCGTATCGG.......................................................................................................................................................... 21 3 2 1.00 2 0 0 0 0 0 2 0 0 0
.....................ATTCCTCACGGACTCTACTCC................................................................................................................................................................................................................ 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0
.................TTCCATTCCTCACGGACT....................................................................................................................................................................................................................... 18 0 1 1.00 1 0 1 0 0 0 0 0 0 0
.............................CGGACTCTACTCCAAGGCACT........................................................................................................................................................................................................ 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0
.........GTCTTGGCTTCCATTCCTCAC............................................................................................................................................................................................................................ 21 0 1 1.00 1 0 0 0 0 1 0 0 0 0
..................TCCATTCCTCACGGACTCT..................................................................................................................................................................................................................... 19 0 1 1.00 1 0 0 1 0 0 0 0 0 0
.........................CTCACGGACTCTACTCCAAGGCACC........................................................................................................................................................................................................ 25 1 1 1.00 1 1 0 0 0 0 0 0 0 0
.........................................CAAGGCACTGTAAGTATCACT............................................................................................................................................................................................ 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0
...................CCATTCCTCACGGACTCTACT.................................................................................................................................................................................................................. 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0
................CTTCCATTCCTCACGGACTCTACT.................................................................................................................................................................................................................. 24 0 1 1.00 1 0 0 1 0 0 0 0 0 0
.........................................................................................................................................GTCATTGATGAACGAA................................................................................................. 16 1 2 0.50 1 0 0 0 0 0 0 1 0 0
..................................................................................................................................CGCCGTCGCGATTGA......................................................................................................... 15 1 3 0.33 1 0 0 0 0 0 0 0 1 0
.......................................................................................................................GTTTCCTCAGGCGCCGT.................................................................................................................. 17 2 10 0.10 1 0 0 0 0 0 0 0 1 0
.............................................GCACTGGAAGTATCATT............................................................................................................................................................................................ 17 2 20 0.05 1 0 0 0 0 0 0 0 0 1

Anti-sense strand reads

CCGCGACCGCAGAACCGAAGGTAAGGAGTGCCTGAGATGAGGTTCCGTGACATTCATAGTGATTATATATATTGTAGATATATCTATATCATAGCTTATATGTATACAAATAAACACGGCCAAGGAGACCGCGGCAGCGGTAACTACTTGCTTGACGAATGTGCCTTGTGCCCTGAACAACCACCCGTCCCCCTCGCTATAGCGGCACTAGAGCACGCGCTTTATGCTTTTATCGAGTTTCGACGGAACA
**************************************************....(((((.....((((((.......))))))))))).(((.((((((.((....)).)))))))))..((((((((((((....)))))............((((((((.((..(((.......))))))))))))))))))))....************************************************** 		Read size # Mismatch Hit Count Total Norm Total O001
Testis
 SRR618934
dsim w501 ovaries
 O002
Head
 SRR553488
RT_0-2 hours eggs
 SRR553485
Chicharo_3 day-old ovaries
...................................................................................................................ACGGCCAAGGAGACCGCG..................................................................................................................... 18 0 1 2.00 2 2 0 0 0 0
............................................................................................................................................................................................................GCACTAGAGCACGCGCTTTATG........................ 22 0 1 1.00 1 0 1 0 0 0
........................................GGTTCCGTGACATTCATA................................................................................................................................................................................................ 18 0 1 1.00 1 0 0 1 0 0
............................................................................................................................................................................................CCCTCTCGCTAGCGCGGCAC.......................................... 20 3 3 0.33 1 0 0 0 1 0
....................................................................................................................CGGCCAACGAGATCGCG..................................................................................................................... 17 2 4 0.25 1 0 0 0 0 1
...................................................................................................................................................................................................TCTATAGCGGCAGTAGAG..................................... 18 2 4 0.25 1 0 1 0 0 0
........................................................................................................................................................................................................................GCGCTTTCTGCTTTTA.................. 16 1 5 0.20 1 0 1 0 0 0
.................................................................................................................................................................................................TCGCTATAGCGGCATTGGAA..................................... 20 3 6 0.17 1 0 1 0 0 0
........................................................................................................................................................................TCGCCTGAACAGCCACCCGT.............................................................. 20 3 6 0.17 1 0 1 0 0 0
.......................................................................................................................................................TTGACAAGTGTGCCTTG.................................................................................. 17 2 15 0.07 1 0 1 0 0 0
.....................................................................................................................................................................ATGTGCCATGAACAACCAG.................................................................. 19 3 16 0.06 1 0 1 0 0 0
....................................................................................................................................................................GTTGTGCCATGAACAA...................................................................... 16 2 20 0.05 1 0 1 0 0 0

Generated: 04/24/2015 at 04:34 AM