ID:

dsi_12587

 Coordinate:

x:11927627-11927776 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-23.1 -23.1 -23.0

Flybase annnotation

CDS [x_11927777_11928108_+]; exon [x_11927777_11928108_+]; intron [x_11911135_11927776_+]

Repeatable elements

NameClassFamilyStrand
AT_richLow_complexityLow_complexity+

Sense Strand Reads

--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
TGGCTTTTTGCTTTGTGCTGCTTTTGCCTTTTGATTTTGTTTTTTTTTTTTCTGTACGCCGTCGTGTGCTTCTTTTTACGTCCTCTTTTTTTTTTATTTATTTTTTATTTTGGTAGTTTTGCGAAATATGCGCTCGTTACGTATACGCACGAGAGACACACAGAAATTGATTTTTGGCTTTTCGCCTTTTGCATTCGCAGATGAACGATCACTTGGGTGATTTCGATTGCATCGACCGCGAGGTGCGGAA
**************************************************(((((......(((((((........................................(((.(((....))).)))((((((.......))))))))))))).......)))))...........(((.....)))..((((....))))************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553487
NRT_0-2 hours eggs
 SRR618934
dsim w501 ovaries
 M025
embryo
 M023
head
 SRR902009
testis
 M053
female body
 SRR553486
Makindu_3 day-old ovaries
 SRR553488
RT_0-2 hours eggs
...............TGCTGCTTGTGCCTTTTGAATG..................................................................................................................................................................................................................... 22 3 3 2.33 7 7 0 0 0 0 0 0 0
.............TGAGCTGCTTGTGCCTTTTGAAT...................................................................................................................................................................................................................... 23 3 1 2.00 2 2 0 0 0 0 0 0 0
.....................................................GTACGCCGTCGTGGGCTTCTTTTTA............................................................................................................................................................................ 25 1 1 1.00 1 0 0 1 0 0 0 0 0
.................................................TTCTGTACGCCGTCGTGTGCT.................................................................................................................................................................................... 21 0 1 1.00 1 0 0 0 1 0 0 0 0
..........................................................................................................................................................................................................................GATTTCGATTGCATCGAC.............. 18 0 1 1.00 1 0 1 0 0 0 0 0 0
................................................................................................................................................................................................................TCACTTGGGTGATTTCGATTGCATCGAC.............. 28 0 1 1.00 1 0 1 0 0 0 0 0 0
.......................................................................................................................................................................................................GATGAACGATCACTTGGGTGAT............................. 22 0 1 1.00 1 0 1 0 0 0 0 0 0
.....................................................GTACGCCGTCGTGTGCTTCTTTTTA............................................................................................................................................................................ 25 0 1 1.00 1 0 0 1 0 0 0 0 0
.............TGAGCTGCTTGTGCCTTTTGAA....................................................................................................................................................................................................................... 22 3 3 0.33 1 1 0 0 0 0 0 0 0
..........................CCTTTTGATTTGGCTTTTTT............................................................................................................................................................................................................ 20 2 9 0.22 2 0 0 0 0 2 0 0 0
....................................................................................................................................................................................................GCAGATGAACGATGAATT.................................... 18 2 5 0.20 1 0 0 0 0 0 1 0 0
..........................CCTTTTGATTTGGCTGTTTTTT.......................................................................................................................................................................................................... 22 3 16 0.13 2 0 0 0 0 2 0 0 0
.......................................................................................TTTCTTTTATTTATTTTTTATTTA........................................................................................................................................... 24 2 18 0.11 2 0 0 0 0 0 0 2 0
.............................................................................................................TTGGTAGTTTTGGAAGATATG........................................................................................................................ 21 3 9 0.11 1 0 0 0 0 0 0 1 0
.....................................................GTACGACGTCGTGTC...................................................................................................................................................................................... 15 2 20 0.05 1 0 0 0 0 0 0 0 1
............................................................................................TTTATGTATTTTTTATTTT........................................................................................................................................... 19 1 20 0.05 1 0 0 0 0 0 1 0 0
.....................................................GTACGACGTCGTGTCC..................................................................................................................................................................................... 16 2 20 0.05 1 0 0 0 0 0 0 0 1

Anti-sense strand reads

ACCGAAAAACGAAACACGACGAAAACGGAAAACTAAAACAAAAAAAAAAAAGACATGCGGCAGCACACGAAGAAAAATGCAGGAGAAAAAAAAAATAAATAAAAAATAAAACCATCAAAACGCTTTATACGCGAGCAATGCATATGCGTGCTCTCTGTGTGTCTTTAACTAAAAACCGAAAAGCGGAAAACGTAAGCGTCTACTTGCTAGTGAACCCACTAAAGCTAACGTAGCTGGCGCTCCACGCCTT
**************************************************(((((......(((((((........................................(((.(((....))).)))((((((.......))))))))))))).......)))))...........(((.....)))..((((....))))************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553485
Chicharo_3 day-old ovaries
 M025
embryo
 SRR902008
ovaries
 SRR553488
RT_0-2 hours eggs
 SRR618934
dsim w501 ovaries
 SRR902009
testis
.......................................AAAAAAAAAAAAGACATGCT............................................................................................................................................................................................... 20 1 1 1.00 1 1 0 0 0 0 0
................................................................................AGGAGAAAGAAAAAATAAACAA.................................................................................................................................................... 22 2 5 0.20 1 0 0 1 0 0 0
.....................................................................AAAAAAAATTCAGGAGAAACAAAAA............................................................................................................................................................ 25 3 5 0.20 1 0 1 0 0 0 0
...............................................................................CAGGAGAAACAAAAAA........................................................................................................................................................... 16 1 20 0.10 2 0 0 0 0 2 0
..........................................................................................................................................................................................AAAACGTTAGCGTCTA................................................ 16 1 12 0.08 1 0 0 0 1 0 0
...................................................................................AGAATAAAAAAAGAAATAAAAAAT............................................................................................................................................... 24 2 13 0.08 1 0 0 0 1 0 0
.......................................AAAAAAAAAAAAGACA................................................................................................................................................................................................... 16 0 20 0.05 1 0 0 0 0 0 1

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim2 x:11927577-11927826 + dsi_12587 TG-----GCTTTT-------T------------------GCTT-----TG-----TGCTGC--TTTTGCCTTTT-GATTTTGTT-------T-----TTTT-TT-------------TTTCTGTA------------------CGCCGTCGTGTGCTTCTTTT---TACGTCCTCT---------------------TTTTT---------------------------------------TTTTA---------------------------------------------------------------TTTATT------TT-TT----ATTTTGGTAGT-TTTGCGAAATATGCGCT-------------------CGTTAC---------------------------------------------------------------------------------------GTATACGC-ACGAGAGACA----------------CACAGAAATTGATTTT--TG--------------------------------------------------------------GCTT---TTCGCC----TTTTGCATTCGCAGATGAACGATCAC-----------------------------------T----TGGGTGATTTCGATTGCATCG---AC------CGCGAGGTGCGGA----------------------------A
droSec2 scaffold_21:325466-325714 + TG-----GCTTTT-------T------------------GCTT-----TG-----TGCTGC--TTTTGCCTTTT-GATTTTGTT-------T-------TT-TT-------------TTTCTGTA------------------CGCCGTCGTGTGCTTCTTTT---TACGTCCTCT---------------------TTTTTT--------------------------------------TTTTA---------------------------------------------------------------TTTATT------TT-TT----ATTTTGGTAGT-TTTGCGAAATATGCGCT-------------------CGTTAC---------------------------------------------------------------------------------------GTATAGGC-ACGAGAGCCA----------------CACAGAAATTAATTTT--TG--------------------------------------------------------------GCTT---TTCGCC----TTTTGCATTCGCAGATGAACGATCAC-----------------------------------T----TGGGTGATTTCGATTGCATCG---AC------CGCGAGGTGCGGA----------------------------A
dm3 chrX:12571569-12571813 + TG-----GCTTTT-------T------------------GCTT-----TG-----TGCTGC--TTTTGCCTTTT-GATTTTGTT-------T-ATTTTTTT-TT-------------TTTTTGTA------------------CGGCGTCGTGTGCTTCTTTT---GACGTCCTCT---------------------TTTT------------------------------------------TTA---------------------------------------------------------------TTTATT------TT-TT----ATTTTGGTAGT-TTTGCGAAATATGCGCT-------------------AGTTAC---------------------------------------------------------------------------------------GTATACGC-CCGAGCGACA----------------CACAGAAATTGATTTT--TG--------------------------------------------------------------GCTT---TTCGTC----TTTTGCATTCGCAGATGAACGATCAC-----------------------------------T----TGGGTGATTTCGATTGC-------AA------C--GAGGTGCGCA----------------------------A
droEre2 scaffold_4690:14287157-14287385 - TT------------------A------------------ACTT-----TG-----TGCTGC--TTTTGCTT--------TTGTT-------T-------TC-TT-------------TTT-ATT------------------TCGACGTCTTGCGCTTCGTTT---TACGTCCTCT---------------------TTTTT---------------------------------------TTTTA---------------------------------------------------------------TT-ATAGTT-TTTT-TTGTTT------TGTAT-TTTGCGAAATATATGCT-------------------CGTTAC---------------------------------------------------------------------------------------GTATAAGC-CGAAGAGACG----------------CACAGAAATTGATGTT--TG--------------------------------------------------------------GCT--------------TTTTGCATTCGCAGATGAACGATCAC-----------------------------------T----TGGGTGATTTGGATCGCATAC---AA------CGCGAGGTGCGTA----------------------------A
droYak3 X:6843489-6843759 + TG-----GCTTTT-------A------------------ACTT-----TG-----TGCTGC--TTTTGCCTTTT-GGTTTTGTTGTTTCATTTAT--TTTT-TT-------------TTTCATT------------------TCGGTGTCTTGCGCTTCTTTT---TACGTCCTCT---------------------CTTTTTTTGAGTTTT---TTTT----------------------TTTTG---------------------------------------------------------------ATTATA------TT-TTGTT-------GTATA-TTTGCGAAATATACGCT-------------------CGTTAC---------------------------------------------------------------------------------------GTATACGC-CCGAGAGACA----------------CACAGAAATTGATTTT--TG--------------------------------------------------------------GCTT---TTCGCC----TTTTGCATTCGCAGATGAACGATCAC-----------------------------------T----TGGGTGATTTGGATCGCATAC---AA------CGCGAGGTGCGCA----------------------------A
droEug1 scf7180000409110:960381-960621 + TG-----GCTTTT-------G------------------GCTT-----TG-----TGCTGC--TTTTGCCTT--------------------------------------------------------------------------------GCGCTTCTTTTTTTAACGTCCTCT---------------------CTTTTATTATTATTT---TTTTTACTTCTTTTT-----------TTTTG---------------------------------------------------------------GTTATT------TT-AG----TTTTTGGGATT-TTTGCGAAATATTCGCT-------------------CGTTAC---------------------------------------------------------------------------------------GTATACGCCCCGAGAAA------------------CACAGAAATTGATTT---TG--------------------------------------------------------------GTTT---TTCAAC----TTTTGCATTCACAGGTGGCCAGCTAT------------------------------------------CGTGATCGCGATCATCTCCAGCAA------CAGCAGCAGCAGC----------------------------A
droBia1 scf7180000298389:147520-147757 + TG-----GCTTTT-------G------------------GCTT-----TG-----TGCTGC--TTTTGCTT-TT-GCCTTTGTT--------------------------------T-------------------------TCGG----------------------CGTCCTCT---------------------CTTTTATT-TTATTTTATTTTATACTTCTGTG--------------------------------------------------------------------------TTTTTTTTTAT----------------TGT---TGATT-TTTGCGAAATATTCGCT-------------------CGTTACGT--A------------------------------------------------------------------------------TTACGTATACGC-CCGAGAGT------------------CACAGAAATTGATTTT--TG--------------------------------------------------------------GTTT---CTCGTC----TTTTGCATTCGCAGGTGGCCAGCGAC------------------------------------------CGTGATCGCGATCATCTCC---AG------CAGCAGCAGCAGC----------------------------A
droTak1 scf7180000414425:247002-247245 + TG-----GCTTTT-------G------------------GCTT-----TG-----TGCTGC--TTTTGCGTTTT-GCCTTTTTC-------G-AATTTTTTCCTTTTGCCTTTGTTT-------------------------T-------------------------CGGCCTCC----------------CCT--C---TA--------------------------------------TTTTA---------------------------------------------------------------TTTCA-TGT-TTTT-GG----GTTTTGGGATT-TTTGCGAAATATTCGCT-------------------CGTTAC---------------------------------------------------------------------------------------GTATACGC-CCGAGCGACAGAGA------------GACAGAAATTGATTT---TG--------------------------------------------------------------GCTT---TTCGCC----TCTTGCATTCACAGGTGGCCAGCGAC------------------------------------------CGTGATCGCGATCATCTCC---AG------CAGCAGCAGCAGC----------------------------A
droEle1 scf7180000491023:255028-255244 + TG-----GCTGTT-------G------------------GCTT-----TG-----TGCTGC--TTTTGCTTTTT-GGTTTTGTT--------------------------------T-------------------------TCGGCGGC----GGCTCTTTT---TACATCCTCT---------------------CTTTTT----------------------------------------------------------------------------------------------------------------------TT-GG----ATTTTTGGATT-TTTGCGAAATATTCGCT-------------------TGTTAC---------------------------------------------------------------------------------------GTATACGC-CCGAGAGA------------------CACAGAAATTGATTT---TG--------------------------------------------------------------GTTT---TTCGCC----TTCTGCATTCACAGGTGGCCAGCGAC------------------------------------------CGCGATCGCGATCATCTCC---AG------CAGCAACAGCAGC----------------------------A
droRho1 scf7180000779985:106341-106577 - TG-----GCTTTT-------G------------------GCTT-----TG-----TGCTGC--TTTTGCTTTTTTGGCTTTGTT--------------------------------T-------------------------TCGGCGGC--GCGCTACTTTT---TACGTCTCCCTCTCTCCTTCTCT---CCTCTCTTT----------------------------------------------------------------------------------------------------------------------------------TTTTGGATTT-TTTGCGAAATATTCGCT-------------------AGTTAC---------------------------------------------------------------------------------------GTATACGC-CCGAGAGA------------------CACAGAAATTGATTT---TG--------------------------------------------------------------GTTT---TTCGCC----TTCTGCATTCACAGGTGGCCAGCGAC------------------------------------------CGCGATCGCGATCATCTCC---AGCAGCAACAGCAGCAGCAGC----------------------------A
droFic1 scf7180000453882:326715-326971 + TG-----GCTTTT-------G------------------GCTT-----TG-----TGCTGC--TTTTGATTTTT-GGCTTTGTT-------T-------CT-TT--TTCTT------TTTCTGTATTTTTTTTGTTTTTGTGTCGGCGGC--ACGCTTCTTTT---TACGTCCTCT----------------CCTCTCTTT-----------------------------------------------------------------------------------------------------------------------------------TTTTGGATT-TTTGCGAAATATTCGCT-------------------CGTTAT--ACG------------------------------------------------------------------------------TTACGTATACGC-CCGAGAGA------------------CACAGAAATTGATTT---TG--------------------------------------------------------------GTTT---TTCGCC----TTCTGCATTCACAGGTGGCCAGCGAC------------------------------------------CGTGATCGCGATCATCTCC---AG------CAGCAACAGCAGC----------------------------A
droKik1 scf7180000302621:141939-142212 - CG-----GCT--T-------G------------------GCTT-----TGCCTTTTGCTTATACTTTGCCTTTT-GCCTTTGCC-------T-----TTGT-GT-------------TTT--------------------------------ATGCTTT-------------TCCCCCCCTCCTTCACTTATTCCCTCCGTTTTTGGCTTTG-----------------------------TTTTG----------------------------------------------------TTGTCTTTTTTTTTAT----------------GGTTTTGAATT-TTTGCGAAATATATATT-------------------CGCCACG----------------------------------------------------------------------------------TTACGTATACGC-CCGAGCGA------------------CCAAAAAATTGATTTT--TG--------------------------------------------------------------CATTTTTTCCGTCTT-TCTTTGCATTCACAGGTGGCCAGCGAT------------------------------------------CGTGATCGCGAACATCTCC---AG------CAGCAACAGCAGC----------------------------A
droAna3 scaffold_13117:3487801-3488090 + GA-----GCTCTT-------G------------------GCTC-----TC-----TTCTCT--TCTCCCCTTGT-CC---------------------------------------------------------------------------------CCTTT---TACCT---TT---------------------CCTTTATT-------------------------------ATTAT---------ATATTTAAGTCTCCCCCC-CTTTTTTTTT-----TTTTTTGGTCTTTT----------------------------GTTT------GGCCT-TTTGCGAAATATTCGCT-------------------CGTTACGTATA------------------------------------------------------------------------------TTACGTATACGC-CCGAGAGA--------------------CGGAAATTGATTTTTTTGGATTT---------------GTGCTTCTTCTTCTTCTTCTCTCACTCACCTCT-TATTTAAAATGT---ATT-TTATTTTTTTTCATTCACAGGTGGCGAG------------------------------------------------TGATCGCGATCATCAGC---AA------CAGCAACAGCAGC----------------------------C
droBip1 scf7180000395895:66998-67272 - TCCAAGCACCATTTGAGCTTGGCT-----------TTTGGCTC-----TT-----CTCTTC----------------------------------------------------------------------------------------------CCCCTTTT---TACCTTCTT-----------------------TTTT---------------------------------------TTTTATTATATATTTATGTC----------------------------------------------------------GTTT-TTGTTT------GGCCT-TTTGCGAAATATTCGCT-------------------CGTTACGTATA------------------------------------------------------------------------------TTACGTATACGC-CCGAGAGA--------------------CGGAAATTGATTTT--TTTATATATATTTTTTTTTTTGGTATTTCTTC---------------TCACCTCTTTATTTAAAATGT---ATT-TTTTTTTTTGTCATTCACAGGTGGCGAG------------------------------------------------TGATCGCGATCATCAGC---AA------CAGCAACAGCAGC----------------------------A
dp5 XL_group1a:4818366-4818609 - GG-----GCCTCG-------G------------------GCTT-----TG-----AGTTGA--TTTTCG-GTTT-GATTTTGAT-------TTGTATTTTT-AT-------------TTTGGCT------------------GCGACTGC----GACTGTGGT---TTCGGTTTAT---------------------GT------------------------------------------TTTTG---------------------------------------------------------------TTTATG------TT-TC----GAA-----TCG-GTTTCGGAATCGGTATCGGGGCTTGGCGCATGCGCGGCCTGC-----AGAC-CATTTTCAA---------------------------------------------------------------------TGAGCGC-TCGAGTTG------------------TACTGAAGC---------------------------------------------------------------------------------------------------CAGAGCTG------------------------------------------------------------------CCGC---TG------CGGCTGCCTCTGCGGTTGCGTCGTCAACTTTGAAGTGCGGCT
droPer2 scaffold_77:136546-136782 - AC-----ACCATTTGAGCCGTGTC------------------------TT-----TGCTGC--TCGT------C-GCCCTC----------------------TTTCGCCCTCGTTC----GT-------------------T-------------------------CGCCCTCT---------------------CTCTCTT-------------------------------------TATCA---------------------------------------------------------------TCCGA-TCCCTTTTGAG----TCTTTTGAGTT-TTTGCGAAACATTCGC---------------------GTTAC---------------------------------------------------------------------------------------GTATC--C-CCAAGCAGC-----------------AATGGAAATTGATTT---CA--------------------------------------------------------------ACGT---ATCTCA-T-TCAACCCATTCGCAGGTGGCCAGCGAT------------------------------------------CATCAC------CAGCCGC---AG------CAGCAGCAGCAGCACCAGCACCATCAG-------------CA
droWil2 scf2_1100000004909:3759084-3759339 + CC-----ACCATTTGTGTGTG-TGTGTGGTTGCCCCATGGTTTTTTTTTT-----TTTTTT--TTTTGTC----------------------------------------------T----GT------------------------------TGCCTCTTCC---TCTGTTTCCT---------------------CCTT---------------------------------------------------------------------TTGCTTTTTGTGTA-----------------------------T--------G-GGGTTT------TGTCT-TTTGCGAAATATTCGC---------------------GTTAC---------------------------------------------------------------------------------------GTGA--------------------------------ATTGAAGTTGATTTT--TTGATTT---------------TTGGTTCGTT-----------TCGT--------TTATTTTTAATTT---GTG-TTTT-TCTCTTCATTTGCAGGTGGCCACTGGC------------------------------------------TGTGATCAACAGCAACAGC---AA------CAGCAGCCGCAGC--------------------------ATA
droVir3 scaffold_12928:505754-506028 + TT-----T----T-------G------------------TCTT-----TT-----TTTTTT--TTTTATT--------TTCATT-------T-------CT-CT---------------------------------------------------------------------TAT---------------------CTGTTTTTGGCCTTT---TTTTTGTTTTTTGTTTTTT-------GTTCA----------A----------------------------------------------------CATGAT------TT-TT----TTTTGGCTAGCGTTGCCGGCGAATGCGCT-------------------CATCGGCTTTA------------------------------------------------------------------------------T---TTA---GC-CAAAGAGCCAAAGAAGAAGAGCTAGAAAAAACAGCTGGCGT---TT--------------------------------------------------------------GCTT---TTCGCC----AC--GCAC-TGTAGATGGGCAGGGAGGGGTGCTAGCCGCTCGTGTGGGCGGCAACGAAAATT-----------TTCCGGTTG-ATAA---AC------AAAAATGAGAGAA----------------------------A
droMoj3 scaffold_6473:13922135-13922357 - TA-----GATTTT-------T------------------GCTT-----TT-----TTGTTT--TTTTACCAACA-CACTTTCTT-------T-----TTTG-CT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTCAAACGTACACGCC-------------------AATTGG-----AGTCTCATTTCTAATGATCTCTTCTTTATTTCTGTTTCTCTTCGCTCTAATTACAGTTATTCCAAGTGCCCGGCTATAGC--ATACCCAC-GTGCGTGCGC--------------------------------------------------------------------------------------------------------------------------------------------------------------------TGCTCAGAACAGTTGACAAACAATTCGAGCTTCCATCA---AG------CGGTGCGAGTGCA----------------------------G
droGri2 scaffold_14853:1685252-1685454 + GG-----TTTGTT-------G------------------TTTT-----TT-----GTTGGC--TTTTGCTTTTT-GCTTTTTGT-------T------------------------T-------------------------TTTGCTTT--TTGTTTCTGTT---TTCGTTTTCG---------------------TTTCAT------------------------TCA----TCTCTAT---------ATATTTAAACTTAGCTTTCAGGTTTGCTT-----CCGTTTCGTTT-----------------------------------------TCAGT-TTTGC------------------------------TGCCAGT-----GAAA-C----------------------------------------------------------------------------GTTTACGA-ACGAACA---------------------AATGAAATGCTTT---TT--------------------------------------------------------------GCTG---TCAGCT----TTT-------------------------------------------------------------------------------------------------------------------------------ATGCTGCATT

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
TG-----GCTTTT-------T------------------GCTT-----TG-----TGCTGC--TTTTGCCTTTT-GATTTTGTT-------T-----TTTT-TT-------------TTTCTGTA------------------CGCCGTCGTGTGCTTCTTTT---TACGTCCTCT---------------------TTTTT---------------------------------------TTTTA---------------------------------------------------------------TTTATT------TT-TT----ATTTTGGTAGT-TTTGCGAAATATGCGCT-------------------CGTTAC---------------------------------------------------------------------------------------GTATACGC-ACGAGAGACA----------------CACAGAAATTGATTTT--TG--------------------------------------------------------------GCTT---TTCGCC----TTTTGCATTCGCAGATGAACGATCAC-----------------------------------T----TGGGTGATTTCGATTGCATCG---AC------CGCGAGGTGCGGA----------------------------ASizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
......................................................................................................................TTCTGTA------------------CGCCGTCGTGTGCT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00110000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTTCGATTGCATCG---AC------..........................................1811.00100000000001000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCAC-----------------------------------T----TGGGTGATTTCGATTGCATCG---AC------..........................................2811.00100000000001000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGAACGATCAC-----------------------------------T----TGGGTGAT..................................................................2211.00100000000001000000
..........................................................................................................................GTA------------------CGCCGTCGTGTGCTTCTTTT---TA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.00100100000000000000
droSec2
TG-----GCTTTT-------T------------------GCTT-----TG-----TGCTGC--TTTTGCCTTTT-GATTTTGTT-------T-------TT-TT-------------TTTCTGTA------------------CGCCGTCGTGTGCTTCTTTT---TACGTCCTCT---------------------TTTTTT--------------------------------------TTTTA---------------------------------------------------------------TTTATT------TT-TT----ATTTTGGTAGT-TTTGCGAAATATGCGCT-------------------CGTTAC---------------------------------------------------------------------------------------GTATAGGC-ACGAGAGCCA----------------CACAGAAATTAATTTT--TG--------------------------------------------------------------GCTT---TTCGCC----TTTTGCATTCGCAGATGAACGATCAC-----------------------------------T----TGGGTGATTTCGATTGCATCG---AC------CGCGAGGTGCGGA----------------------------ASizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T----TGGGTGATTTCGATTGCATCG---AC------..........................................2411.0010100
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAACGATCAC-----------------------------------T----TGGGTGA...................................................................1911.0010010
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGAACGATCAC-----------------------------------T----TGGGT.....................................................................1811.0011000
dm3
TG-----GCTTTT-------T------------------GCTT-----TG-----TGCTGC--TTTTGCCTTTT-GATTTTGTT-------T-ATTTTTTT-TT-------------TTTTTGTA------------------CGGCGTCGTGTGCTTCTTTT---GACGTCCTCT---------------------TTTT------------------------------------------TTA---------------------------------------------------------------TTTATT------TT-TT----ATTTTGGTAGT-TTTGCGAAATATGCGCT-------------------AGTTAC---------------------------------------------------------------------------------------GTATACGC-CCGAGCGACA----------------CACAGAAATTGATTTT--TG--------------------------------------------------------------GCTT---TTCGTC----TTTTGCATTCGCAGATGAACGATCAC-----------------------------------T----TGGGTGATTTCGATTGC-------AA------C--GAGGTGCGCA----------------------------ASizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCAC-----------------------------------T----TGGGTGATTTCGATTGC-------AA------C--.......................................2716.0060000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100500000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGC-------AA------C--GAGGTGCGCA----------------------------A1816.0060000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000010000000040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGGTGATTTCGATTGC-------AA------C--GAGG...................................2416.0060000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000001100000000000000000000102000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAACGATCAC-----------------------------------T----TGGGTGATTTCGAT............................................................2614.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000400000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTTCGATTGC-------AA------C--GAGGT..................................2014.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000010000000010000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGATTTCGATTGC-------AA------C--GAGGT..................................2113.0030000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGC-------AA------C--GAGGTGCGCA----------------------------A1913.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGGTGATTTCGATTGC-------AA------C--GAGGTGC................................2713.0030000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGATTTCGATTGC-------AA------C--GAGGTGCG...............................2412.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000010000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGAACGATCAC-----------------------------------T----TGGGT.....................................................................1812.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGAACGATCAC-----------------------------------T----TGGGT.....................................................................1912.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AC-----------------------------------T----TGGGTGATTTCGATTGC-------AA------C--.......................................2312.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGGTGATTTCGATTGC-------AA------C--GAGGTG.................................2612.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAACGATCAC-----------------------------------T----TGGGTGATTT................................................................2212.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGATTTT--TG--------------------------------------------------------------GCTT---TTCGTC----............................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGTC----TTTTGCATTCGCAGATGAACGA......................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................TTTTGCCTTTT-GATTTTGTT-------T-ATTTTTTT-TT-------------TTTT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................3511.0010000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAACGATCAC-----------------------------------T----TGGGTGATTTCG..............................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGAACGATCAC-----------------------------------T----TGGGTGATTTC...............................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACGATCAC-----------------------------------T----TGGGTGATTTCG..............................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TT--TG--------------------------------------------------------------GCTT---TTCGTC----TTTTGCATTCGCA...............................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTGATTTCGATTGC-------AA------C--GAG....................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T----TGGGTGATTTCGATTGC-------AA------C--GAGG...................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T----TGGGTGATTTCGATTGC-------AA------C--GAG....................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAC-----------------------------------T----TGGGTGATTTCGATTGC-------A.................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000
...............................................................................................................................................CGGCGTCGTGTGCTTCTTTT---GACG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................T-------------------AGTTAC---------------------------------------------------------------------------------------GTATACGC-CCGAGCGACA----------------CA.............................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATTCGCAGATGAACGA......................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAC-----------------------------------T----TGGGTGATTTCGATTGC-------AA------C--G......................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTCGATTGC-------AA------C--GAGGTGCGC..............................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCGATTGC-------AA------C--GAGGTGCG...............................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACGC-CCGAGCGACA----------------CACAGAAATT.....................................................................................................................................................................................................................................2511.0010000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAACGATCAC-----------------------------------T----TGGGTGATTT................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGATTGC-------AA------C--GAGGTGCGCA----------------------------A2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGATGAACGATCAC-----------------------------------T----TGGGT.....................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCATTCGCAGATGAACGAT.....................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGAACGATCAC-----------------------------------T----TGGGTGATT.................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000
..........................................................................................................................................................................................................................................................................................................................................ATTTTGGTAGT-TTTGCGAAATA........................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCGATTGC-------AA------C--GAGGTGCGC..............................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
.....................................................................................................................TTTTTGTA------------------CGGCGTCGTGTGC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................GTGCTTCTTTT---GACGTCCTCT---------------------....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGAACGATCAC-----------------------------------T----TGGGTGATTTC...............................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........CTTTT-------T------------------GCTT-----TG-----TGCTGC--TTTTGCCT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................T-------------------AGTTAC---------------------------------------------------------------------------------------GTATACGC-CCGAGC...................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTCGATTGC-------AA------C--GAGGTGCGC..............................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000
...........TT-------T------------------GCTT-----TG-----TGCTGC--TTTTGCCTTTT-G.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTTCGATTGC-------AA------C--GAGGTG.................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGAACGATCAC-----------------------------------T----TGGGTG....................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................TT------TT-TT----ATTTTGGTAGT-TTTG...............................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTGC-------AA------C--GAGGTGCGC..............................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCAC-----------------------------------T----TGGGTGATTTCGATTG..........................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGTGATTTCGATTGC-------AA------C--GAGGT..................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGGTGATTTCGATTGC-------AA------C--GAGGT..................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000
..................................................................................................TTT-TT-------------TTTTTGTA------------------CGGCGTCGTGTGC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................TT-TT----ATTTTGGTAGT-TTTGCG.............................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTGCATTCGCAGATGAACGATCAC-----------------------------------T----..........................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGATTTCGATTGC-------AA------C--GAGGTGC................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AC-----------------------------------T----TGGGTGATTTCGATTGC-------AA------C--G......................................2411.0010000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................TA---------------------------------------------------------------TTTATT------TT-TT----ATTTTGG........................................................................................................................................................................................................................................................................................................................................................................................................................1920.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
..................................................................................................................................................................T---GACGTCCTCT---------------------TTTT------------------------------------------TTT---------------------------------------------------------------....................................................................................................................................................................................................................................................................................................................................................................................................................................................1840.2510000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droEre2
TT------------------A------------------ACTT-----TG-----TGCTGC--TTTTGCTT--------TTGTT-------T-------TC-TT-------------TTT-ATT------------------TCGACGTCTTGCGCTTCGTTT---TACGTCCTCT---------------------TTTTT---------------------------------------TTTTA---------------------------------------------------------------TT-ATAGTT-TTTT-TTGTTT------TGTAT-TTTGCGAAATATATGCT-------------------CGTTAC---------------------------------------------------------------------------------------GTATAAGC-CGAAGAGACG----------------CACAGAAATTGATGTT--TG--------------------------------------------------------------GCT--------------TTTTGCATTCGCAGATGAACGATCAC-----------------------------------T----TGGGTGATTTGGATCGCATAC---AA------CGCGAGGTGCGTA----------------------------ASizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGAACGATCAC-----------------------------------T----TGGGT.....................................................................1912.0020000200
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGATTTGGATCGCATAC---AA------CGCGAGG...................................2612.0022000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T----TGGGTGATTTGGATCGC.........................................................1811.0010000010
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AC-----------------------------------T----TGGGTGATTTGGATCG..........................................................1911.0010010000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATAC---AA------CGCGAGGTGCGTA----------------------------A2211.0010001000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAC-----------------------------------T----TGGGTGATTTGGATC...........................................................1911.0010001000
droYak3
TG-----GCTTTT-------A------------------ACTT-----TG-----TGCTGC--TTTTGCCTTTT-GGTTTTGTTGTTTCATTTAT--TTTT-TT-------------TTTCATT------------------TCGGTGTCTTGCGCTTCTTTT---TACGTCCTCT---------------------CTTTTTTTGAGTTTT---TTTT----------------------TTTTG---------------------------------------------------------------ATTATA------TT-TTGTT-------GTATA-TTTGCGAAATATACGCT-------------------CGTTAC---------------------------------------------------------------------------------------GTATACGC-CCGAGAGACA----------------CACAGAAATTGATTTT--TG--------------------------------------------------------------GCTT---TTCGCC----TTTTGCATTCGCAGATGAACGATCAC-----------------------------------T----TGGGTGATTTGGATCGCATAC---AA------CGCGAGGTGCGCA----------------------------ASizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGATTTT--TG--------------------------------------------------------------GCTT---TTCGCC----TTTTGCA.....................................................................................................................................2618.00800000000008
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGAACGATCAC-----------------------------------T----TGGGT.....................................................................1911.00100000010000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGAACGATCAC-----------------------------------T----TGGGT.....................................................................1811.00100010000000
..................................................................................................................................................TGTCTTGCGCTTCTTTT---TACGTCCT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.00101000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAC-----------------------------------T----TGGGTGATTTGGATCGCATA......................................................2411.00100000010000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGCATAC---AA------CGCGAGGTGCGC..............................2111.00100000010000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAC---AA------CGCGAGGTGCGCA----------------------------.1911.00101000000000
droEug1
TG-----GCTTTT-------G------------------GCTT-----TG-----TGCTGC--TTTTGCCTT--------------------------------------------------------------------------------GCGCTTCTTTTTTTAACGTCCTCT---------------------CTTTTATTATTATTT---TTTTTACTTCTTTTT-----------TTTTG---------------------------------------------------------------GTTATT------TT-AG----TTTTTGGGATT-TTTGCGAAATATTCGCT-------------------CGTTAC---------------------------------------------------------------------------------------GTATACGCCCCGAGAAA------------------CACAGAAATTGATTT---TG--------------------------------------------------------------GTTT---TTCAAC----TTTTGCATTCACAGGTGGCCAGCTAT------------------------------------------CGTGATCGCGATCATCTCCAGCAA------CAGCAGCAGCAGC----------------------------ASizeHit CountTotal NormTotal
No Reads
droBia1
TG-----GCTTTT-------G------------------GCTT-----TG-----TGCTGC--TTTTGCTT-TT-GCCTTTGTT--------------------------------T-------------------------TCGG----------------------CGTCCTCT---------------------CTTTTATT-TTATTTTATTTTATACTTCTGTG--------------------------------------------------------------------------TTTTTTTTTAT----------------TGT---TGATT-TTTGCGAAATATTCGCT-------------------CGTTACGT--A------------------------------------------------------------------------------TTACGTATACGC-CCGAGAGT------------------CACAGAAATTGATTTT--TG--------------------------------------------------------------GTTT---CTCGTC----TTTTGCATTCGCAGGTGGCCAGCGAC------------------------------------------CGTGATCGCGATCATCTCC---AG------CAGCAGCAGCAGC----------------------------ASizeHit CountTotal NormTotal
No Reads
droTak1
TG-----GCTTTT-------G------------------GCTT-----TG-----TGCTGC--TTTTGCGTTTT-GCCTTTTTC-------G-AATTTTTTCCTTTTGCCTTTGTTT-------------------------T-------------------------CGGCCTCC----------------CCT--C---TA--------------------------------------TTTTA---------------------------------------------------------------TTTCA-TGT-TTTT-GG----GTTTTGGGATT-TTTGCGAAATATTCGCT-------------------CGTTAC---------------------------------------------------------------------------------------GTATACGC-CCGAGCGACAGAGA------------GACAGAAATTGATTT---TG--------------------------------------------------------------GCTT---TTCGCC----TCTTGCATTCACAGGTGGCCAGCGAC------------------------------------------CGTGATCGCGATCATCTCC---AG------CAGCAGCAGCAGC----------------------------ASizeHit CountTotal NormTotal
No Reads
droEle1
TG-----GCTGTT-------G------------------GCTT-----TG-----TGCTGC--TTTTGCTTTTT-GGTTTTGTT--------------------------------T-------------------------TCGGCGGC----GGCTCTTTT---TACATCCTCT---------------------CTTTTT----------------------------------------------------------------------------------------------------------------------TT-GG----ATTTTTGGATT-TTTGCGAAATATTCGCT-------------------TGTTAC---------------------------------------------------------------------------------------GTATACGC-CCGAGAGA------------------CACAGAAATTGATTT---TG--------------------------------------------------------------GTTT---TTCGCC----TTCTGCATTCACAGGTGGCCAGCGAC------------------------------------------CGCGATCGCGATCATCTCC---AG------CAGCAACAGCAGC----------------------------ASizeHit CountTotal NormTotal
No Reads
droRho1
TG-----GCTTTT-------G------------------GCTT-----TG-----TGCTGC--TTTTGCTTTTTTGGCTTTGTT--------------------------------T-------------------------TCGGCGGC--GCGCTACTTTT---TACGTCTCCCTCTCTCCTTCTCT---CCTCTCTTT----------------------------------------------------------------------------------------------------------------------------------TTTTGGATTT-TTTGCGAAATATTCGCT-------------------AGTTAC---------------------------------------------------------------------------------------GTATACGC-CCGAGAGA------------------CACAGAAATTGATTT---TG--------------------------------------------------------------GTTT---TTCGCC----TTCTGCATTCACAGGTGGCCAGCGAC------------------------------------------CGCGATCGCGATCATCTCC---AGCAGCAACAGCAGCAGCAGC----------------------------ASizeHit CountTotal NormTotal
No Reads
droFic1
TG-----GCTTTT-------G------------------GCTT-----TG-----TGCTGC--TTTTGATTTTT-GGCTTTGTT-------T-------CT-TT--TTCTT------TTTCTGTATTTTTTTTGTTTTTGTGTCGGCGGC--ACGCTTCTTTT---TACGTCCTCT----------------CCTCTCTTT-----------------------------------------------------------------------------------------------------------------------------------TTTTGGATT-TTTGCGAAATATTCGCT-------------------CGTTAT--ACG------------------------------------------------------------------------------TTACGTATACGC-CCGAGAGA------------------CACAGAAATTGATTT---TG--------------------------------------------------------------GTTT---TTCGCC----TTCTGCATTCACAGGTGGCCAGCGAC------------------------------------------CGTGATCGCGATCATCTCC---AG------CAGCAACAGCAGC----------------------------ASizeHit CountTotal NormTotal
No Reads
droKik1
CG-----GCT--T-------G------------------GCTT-----TGCCTTTTGCTTATACTTTGCCTTTT-GCCTTTGCC-------T-----TTGT-GT-------------TTT--------------------------------ATGCTTT-------------TCCCCCCCTCCTTCACTTATTCCCTCCGTTTTTGGCTTTG-----------------------------TTTTG----------------------------------------------------TTGTCTTTTTTTTTAT----------------GGTTTTGAATT-TTTGCGAAATATATATT-------------------CGCCACG----------------------------------------------------------------------------------TTACGTATACGC-CCGAGCGA------------------CCAAAAAATTGATTTT--TG--------------------------------------------------------------CATTTTTTCCGTCTT-TCTTTGCATTCACAGGTGGCCAGCGAT------------------------------------------CGTGATCGCGAACATCTCC---AG------CAGCAACAGCAGC----------------------------ASizeHit CountTotal NormTotal
No Reads
droAna3
GA-----GCTCTT-------G------------------GCTC-----TC-----TTCTCT--TCTCCCCTTGT-CC---------------------------------------------------------------------------------CCTTT---TACCT---TT---------------------CCTTTATT-------------------------------ATTAT---------ATATTTAAGTCTCCCCCC-CTTTTTTTTT-----TTTTTTGGTCTTTT----------------------------GTTT------GGCCT-TTTGCGAAATATTCGCT-------------------CGTTACGTATA------------------------------------------------------------------------------TTACGTATACGC-CCGAGAGA--------------------CGGAAATTGATTTTTTTGGATTT---------------GTGCTTCTTCTTCTTCTTCTCTCACTCACCTCT-TATTTAAAATGT---ATT-TTATTTTTTTTCATTCACAGGTGGCGAG------------------------------------------------TGATCGCGATCATCAGC---AA------CAGCAACAGCAGC----------------------------CSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCAGC---AA------CAGCAACAGCAGC----------------------------.21150.071010000
droBip1
TCCAAGCACCATTTGAGCTTGGCT-----------TTTGGCTC-----TT-----CTCTTC----------------------------------------------------------------------------------------------CCCCTTTT---TACCTTCTT-----------------------TTTT---------------------------------------TTTTATTATATATTTATGTC----------------------------------------------------------GTTT-TTGTTT------GGCCT-TTTGCGAAATATTCGCT-------------------CGTTACGTATA------------------------------------------------------------------------------TTACGTATACGC-CCGAGAGA--------------------CGGAAATTGATTTT--TTTATATATATTTTTTTTTTTGGTATTTCTTC---------------TCACCTCTTTATTTAAAATGT---ATT-TTTTTTTTTGTCATTCACAGGTGGCGAG------------------------------------------------TGATCGCGATCATCAGC---AA------CAGCAACAGCAGC----------------------------ASizeHit CountTotal NormTotal
No Reads
dp5
GG-----GCCTCG-------G------------------GCTT-----TG-----AGTTGA--TTTTCG-GTTT-GATTTTGAT-------TTGTATTTTT-AT-------------TTTGGCT------------------GCGACTGC----GACTGTGGT---TTCGGTTTAT---------------------GT------------------------------------------TTTTG---------------------------------------------------------------TTTATG------TT-TC----GAA-----TCG-GTTTCGGAATCGGTATCGGGGCTTGGCGCATGCGCGGCCTGC-----AGAC-CATTTTCAA---------------------------------------------------------------------TGAGCGC-TCGAGTTG------------------TACTGAAGC---------------------------------------------------------------------------------------------------CAGAGCTG------------------------------------------------------------------CCGC---TG------CGGCTGCCTCTGCGGTTGCGTCGTCAACTTTGAAGTGCGGCTSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
No Reads
droPer2
AC-----ACCATTTGAGCCGTGTC------------------------TT-----TGCTGC--TCGT------C-GCCCTC----------------------TTTCGCCCTCGTTC----GT-------------------T-------------------------CGCCCTCT---------------------CTCTCTT-------------------------------------TATCA---------------------------------------------------------------TCCGA-TCCCTTTTGAG----TCTTTTGAGTT-TTTGCGAAACATTCGC---------------------GTTAC---------------------------------------------------------------------------------------GTATC--C-CCAAGCAGC-----------------AATGGAAATTGATTT---CA--------------------------------------------------------------ACGT---ATCTCA-T-TCAACCCATTCGCAGGTGGCCAGCGAT------------------------------------------CATCAC------CAGCCGC---AG------CAGCAGCAGCAGCACCAGCACCATCAG-------------CASizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAT------------------------------------------CATCAC------CAGCCGC---AG------CAGC......................................2211.001001000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCCAGCGAT------------------------------------------CATCAC------CAGC........................................................2011.001010000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCGC---AG------CAGCAGCAGCAGCACCAGC.......................2560.171010000
droWil2
CC-----ACCATTTGTGTGTG-TGTGTGGTTGCCCCATGGTTTTTTTTTT-----TTTTTT--TTTTGTC----------------------------------------------T----GT------------------------------TGCCTCTTCC---TCTGTTTCCT---------------------CCTT---------------------------------------------------------------------TTGCTTTTTGTGTA-----------------------------T--------G-GGGTTT------TGTCT-TTTGCGAAATATTCGC---------------------GTTAC---------------------------------------------------------------------------------------GTGA--------------------------------ATTGAAGTTGATTTT--TTGATTT---------------TTGGTTCGTT-----------TCGT--------TTATTTTTAATTT---GTG-TTTT-TCTCTTCATTTGCAGGTGGCCACTGGC------------------------------------------TGTGATCAACAGCAACAGC---AA------CAGCAGCCGCAGC--------------------------ATASizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
...........................................................................................................................................................................................................................................................................................A-----------------------------T--------G-GGGTTT------TGTCT-TTTGCGA............................................................................................................................................................................................................................................................................................................................................................................................................2111.00100001
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACAGCAACAGC---AA------CAGCAGCC..................................2370.14100010
droVir3
TT-----T----T-------G------------------TCTT-----TT-----TTTTTT--TTTTATT--------TTCATT-------T-------CT-CT---------------------------------------------------------------------TAT---------------------CTGTTTTTGGCCTTT---TTTTTGTTTTTTGTTTTTT-------GTTCA----------A----------------------------------------------------CATGAT------TT-TT----TTTTGGCTAGCGTTGCCGGCGAATGCGCT-------------------CATCGGCTTTA------------------------------------------------------------------------------T---TTA---GC-CAAAGAGCCAAAGAAGAAGAGCTAGAAAAAACAGCTGGCGT---TT--------------------------------------------------------------GCTT---TTCGCC----AC--GCAC-TGTAGATGGGCAGGGAGGGGTGCTAGCCGCTCGTGTGGGCGGCAACGAAAATT-----------TTCCGGTTG-ATAA---AC------AAAAATGAGAGAA----------------------------ASizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
............................................................T--TTTTATT--------TTCATT-------T-------CT-CT---------------------------------------------------------------------TAT---------------------CTGT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.001001000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAGATGGGCAGGGAGGGGT..............................................................................................................2011.001000000000000000000000000000000000000000000000000000000000000010
droMoj3
TA-----GATTTT-------T------------------GCTT-----TT-----TTGTTT--TTTTACCAACA-CACTTTCTT-------T-----TTTG-CT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTCAAACGTACACGCC-------------------AATTGG-----AGTCTCATTTCTAATGATCTCTTCTTTATTTCTGTTTCTCTTCGCTCTAATTACAGTTATTCCAAGTGCCCGGCTATAGC--ATACCCAC-GTGCGTGCGC--------------------------------------------------------------------------------------------------------------------------------------------------------------------TGCTCAGAACAGTTGACAAACAATTCGAGCTTCCATCA---AG------CGGTGCGAGTGCA----------------------------GSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
No Reads
droGri2
GG-----TTTGTT-------G------------------TTTT-----TT-----GTTGGC--TTTTGCTTTTT-GCTTTTTGT-------T------------------------T-------------------------TTTGCTTT--TTGTTTCTGTT---TTCGTTTTCG---------------------TTTCAT------------------------TCA----TCTCTAT---------ATATTTAAACTTAGCTTTCAGGTTTGCTT-----CCGTTTCGTTT-----------------------------------------TCAGT-TTTGC------------------------------TGCCAGT-----GAAA-C----------------------------------------------------------------------------GTTTACGA-ACGAACA---------------------AATGAAATGCTTT---TT--------------------------------------------------------------GCTG---TCAGCT----TTT-------------------------------------------------------------------------------------------------------------------------------ATGCTGCATTSizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads

Generated: 05/18/2015 at 03:27 PM