ID:

dsi_12576

 Coordinate:

3l:6810624-6810875 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-12.8 -12.7 -12.5

Flybase annnotation

five_prime_UTR [3l_6810876_6810942_-]; exon [3l_6810876_6810942_-]; five_prime_UTR [3l_6810517_6810623_-]; exon [3l_6810509_6810623_-]; intron [3l_6810624_6810875_-]

Repeatable elements

NameClassFamilyStrand
AT_richLow_complexityLow_complexity+

Sense Strand Reads

##################################################------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
AATTAATAGTTCTTATTGCTAAATACCGGTGCCGCACTAACAAAATACTGGTTAGACAACGAACTAACTACAAACTAAAAAGTATAGTGCTCAATCTAGTGTCTAGTGTCTCATATTCTTTTCAGTTCTTAAAAGTGTTAGGTAAGTTTAAATATTTATTTTTATATATTAATTGTCTCCTACTTACAAATATTTTGACATTTTGCTCCATTCATTGTGATCGTTTCTAGAAAACTCAATCGATGTTTCCAGAAAACCCAACCTATCGAACCAATCGATACTAACACCGATTTTTTCCACAGCTCTATTGACGACGTAGAAGCTGAAAAAATTGTGGAGTGAAAAATTGTAA
*******************************************************************************************..((((((((...((((((.....................((((((((..((((((....(((.(((...........))).))).....)))))).))))))))))))))..........))))).))).......**************************************************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR902009
testis
 M025
embryo
 M024
male body		 M023
head
 O001
Testis
 SRR553486
Makindu_3 day-old ovaries
 SRR618934
dsim w501 ovaries
 SRR553485
Chicharo_3 day-old ovaries
 SRR553487
NRT_0-2 hours eggs
..................................................................................................................................................................................................................................................................................................................ATTGACGACGTAGAAGCTGAAA........................ 22 0 1 5.00 5 0 4 1 0 0 0 0 0 0
.........................................................................................................................................................................................................................................................................................................................ACGTAGAAGCTGAAAAAAT.................... 19 0 1 3.00 3 0 0 0 3 0 0 0 0 0
...............................................................................................................................................................................................................CCATTCATTGTGATCGTTTCT............................................................................................................................ 21 0 1 3.00 3 3 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................................TCCATTCATTGTGATCGTTTC............................................................................................................................. 21 0 1 3.00 3 3 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................................................................................................................................CGTAGAAGCTGAAAAAAT.................... 18 0 1 2.00 2 0 0 0 2 0 0 0 0 0
..................................................................................................................................................................................................................................................................................................................ATTGACGACGTAGAAGCT............................ 18 0 1 2.00 2 0 1 1 0 0 0 0 0 0
.............................TGCCGCACTAACAAAATACTG.............................................................................................................................................................................................................................................................................................................. 21 0 1 2.00 2 0 0 2 0 0 0 0 0 0
...............................................................................................................AATATTCTTTTCAGTTCTTAAA........................................................................................................................................................................................................................... 22 1 1 2.00 2 2 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................................................................................................................................TGACGACGTAGAAGCTGAAA........................ 20 0 1 2.00 2 0 1 0 1 0 0 0 0 0
..................................................................................................................................................................................................................................................................................................................................CTGAAAAAATTGTGGAGTGAA......... 21 0 1 2.00 2 2 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................................................................................................................................TGACGACGTAGAAGCTGA.......................... 18 0 1 2.00 2 0 2 0 0 0 0 0 0 0
...................................................................................................................................................................................................................TCATTGTGATCGTTTCTAGAAAA...................................................................................................................... 23 0 1 2.00 2 2 0 0 0 0 0 0 0 0
...................................................................................................................................................................ATATATTAATTGTCTCATACTA....................................................................................................................................................................... 22 2 1 1.00 1 1 0 0 0 0 0 0 0 0
...........................................................................................CAATCTAGTGTCTAGTGTC.................................................................................................................................................................................................................................................. 19 0 1 1.00 1 0 0 0 0 1 0 0 0 0
.....................................................................................................................................................................................................................................................................................................TTTCCACAGCTCTATTGAC........................................ 19 0 1 1.00 1 0 0 1 0 0 0 0 0 0
...............................................CTGGTTAGACAACGAACTAAC............................................................................................................................................................................................................................................................................................ 21 0 1 1.00 1 0 0 0 0 1 0 0 0 0
....................................................................................................................................................................................................................................................................................................TTTTCCACAGCTCTATTGA......................................... 19 0 1 1.00 1 0 0 0 0 1 0 0 0 0
................TGCTAAATACCGGTGCCGCAC........................................................................................................................................................................................................................................................................................................................... 21 0 1 1.00 1 0 0 0 0 1 0 0 0 0
......................................................GACAACGAGCTAACTAC......................................................................................................................................................................................................................................................................................... 17 1 1 1.00 1 0 0 0 0 0 0 1 0 0
..............................................................................................................................................................................................................................................................................................................CCCTATTGACGACGTAGAAGCTGAAAA....................... 27 1 1 1.00 1 0 1 0 0 0 0 0 0 0
.................................................................................................................................................................................................................................................................................................................TATTGACGACGTAGAAGCT............................ 19 0 1 1.00 1 0 0 1 0 0 0 0 0 0
..............................................................................................................................................................................................................................................................................................................CTCTATTGACGACGTAGA................................ 18 0 1 1.00 1 0 0 0 0 0 1 0 0 0
.............................................................................................................................................................................................................................................................................................ACCGATTTTTAACAGAGCTCTAT............................................ 23 3 1 1.00 1 0 0 0 0 0 1 0 0 0
....................................................................................................................................................................................................................................................................................................................TGACGACGTAGAAGCTGAAAA....................... 21 0 1 1.00 1 0 0 1 0 0 0 0 0 0
...................................................................................................................................................................................................................................................................................................................TTGACGACGTAGAAGCTGAAA........................ 21 0 1 1.00 1 0 0 0 1 0 0 0 0 0
......................................................................................................................................................................................................................................................................................................TTCCACAGCTCTATTGACGAC..................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0
........GTTCTTATTGCTAAATACC..................................................................................................................................................................................................................................................................................................................................... 19 0 1 1.00 1 0 0 0 0 1 0 0 0 0
..................................................................................................................................................................................................................................................................................................................ATTGACGACGTAGAAGCTGAAAAAAA.................... 26 1 1 1.00 1 1 0 0 0 0 0 0 0 0
.....ATAGTTCGTATTGCTAAATAC...................................................................................................................................................................................................................................................................................................................................... 21 1 1 1.00 1 1 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................................................................................................................................TGACGACGTAGAAGCTGAAAAAATTG.................. 26 0 1 1.00 1 0 0 0 0 0 1 0 0 0
.............................................................................................................................................................................................ATATTTTGGCATTTTGCTCCA.............................................................................................................................................. 21 1 1 1.00 1 1 0 0 0 0 0 0 0 0
................................................................................................................................................................................................................................................................................................................CTATTGACGACGTAGAAGCTGACA........................ 24 1 1 1.00 1 0 0 0 1 0 0 0 0 0
.................................................................................................................................................................................................................ATTCATTGTGATCGTTTCTAGAAAA...................................................................................................................... 25 0 1 1.00 1 0 1 0 0 0 0 0 0 0
.....................................................................................................................................................................................................................................................................................................................GACGACGTAGAAGCTGAAAA....................... 20 0 1 1.00 1 0 0 0 0 0 1 0 0 0
....................................................................................................................................AAGTGTTAGATAAGTTTAAAT....................................................................................................................................................................................................... 21 1 1 1.00 1 1 0 0 0 0 0 0 0 0
...................................................................................ATAGTGCTCAATCTAGTGTCT........................................................................................................................................................................................................................................................ 21 0 1 1.00 1 0 0 0 0 1 0 0 0 0
.............................................................................AAAAGTATAGTGCTCAATCT............................................................................................................................................................................................................................................................... 20 0 1 1.00 1 1 0 0 0 0 0 0 0 0
...................TAAATACCGGTGCCGCATTA......................................................................................................................................................................................................................................................................................................................... 20 1 1 1.00 1 1 0 0 0 0 0 0 0 0
...................................ATTAACAAAATACTGGTTAGA........................................................................................................................................................................................................................................................................................................ 21 1 1 1.00 1 1 0 0 0 0 0 0 0 0
..........................................AAATACTGGTTAGACAACGAAA................................................................................................................................................................................................................................................................................................ 22 1 1 1.00 1 1 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................................................................................................................................................CGACGTAGAAGCTGAAAAAA..................... 20 0 1 1.00 1 0 0 1 0 0 0 0 0 0
.................................................................................................................................TAAAAGTGTTGGATAAGTTTA.......................................................................................................................................................................................................... 21 2 1 1.00 1 1 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................TATTTTGGCATTTTGCTCCAT............................................................................................................................................. 21 1 1 1.00 1 1 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................................................................................................................................ATTGACGACGTAGAAGCTGAAAA....................... 23 0 1 1.00 1 0 0 1 0 0 0 0 0 0
......................................................................................GTGCTCAATCTAGTGTCTAGT..................................................................................................................................................................................................................................................... 21 0 1 1.00 1 0 0 0 0 1 0 0 0 0
..........................................AAATACTGGTTAGACAACGAAAAA.............................................................................................................................................................................................................................................................................................. 24 2 1 1.00 1 1 0 0 0 0 0 0 0 0
..................................................................................TATAGTGCTCAATCTAGTGTCT........................................................................................................................................................................................................................................................ 22 0 1 1.00 1 0 0 0 0 1 0 0 0 0
...................................................................................................................................................................ATATATTAATTGTCTCATACTAA...................................................................................................................................................................... 23 2 1 1.00 1 1 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................................................................................................................................ATTGACGACGTAGAAGCTGAAAAAATT................... 27 0 1 1.00 1 0 1 0 0 0 0 0 0 0
..................................................................................................................................................................................................................................................................................................................................CTGAAAAAATTGTGGAGTGAAAAA...... 24 0 1 1.00 1 0 0 0 0 0 0 0 1 0
...................................................................................................................................................................................ATACTTACAAATATTTTGGCA........................................................................................................................................................ 21 2 3 0.33 1 1 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................................................................................................................................................GAAAAAATGGTGGAGT............ 16 1 7 0.14 1 0 0 0 0 0 0 1 0 0
....................................................................................................................................ATGTGTTAGGTAAGT............................................................................................................................................................................................................. 15 1 8 0.13 1 0 0 0 0 0 0 0 0 1
..........................................................................................................................................................................................................................................................AGAAAACCCAAGAGATCGAA.................................................................................. 20 3 18 0.06 1 1 0 0 0 0 0 0 0 0
.................................................................................................ACTGTCTAGTGTCCCA............................................................................................................................................................................................................................................... 16 2 20 0.05 1 0 0 0 0 0 0 1 0 0

Anti-sense strand reads

TTAATTATCAAGAATAACGATTTATGGCCACGGCGTGATTGTTTTATGACCAATCTGTTGCTTGATTGATGTTTGATTTTTCATATCACGAGTTAGATCACAGATCACAGAGTATAAGAAAAGTCAAGAATTTTCACAATCCATTCAAATTTATAAATAAAAATATATAATTAACAGAGGATGAATGTTTATAAAACTGTAAAACGAGGTAAGTAACACTAGCAAAGATCTTTTGAGTTAGCTACAAAGGTCTTTTGGGTTGGATAGCTTGGTTAGCTATGATTGTGGCTAAAAAAGGTGTCGAGATAACTGCTGCATCTTCGACTTTTTTAACACCTCACTTTTTAACATT
****************************************************************************************************************************..((((((((...((((((.....................((((((((..((((((....(((.(((...........))).))).....)))))).))))))))))))))..........))))).))).......******************************************************************************************* 		Read size # Mismatch Hit Count Total Norm Total SRR902009
testis
 O001
Testis
 M024
male body		 SRR553486
Makindu_3 day-old ovaries
 M023
head
 O002
Head
 SRR553488
RT_0-2 hours eggs
 SRR618934
dsim w501 ovaries
 SRR902008
ovaries
 SRR553485
Chicharo_3 day-old ovaries
 SRR553487
NRT_0-2 hours eggs
..............................................................................................................................................................................................................................................................................................GGCTAAAAAAGGTGTCGAGAT............................................. 21 0 1 7.00 7 7 0 0 0 0 0 0 0 0 0 0
.........................................................TTGCTTGATTGATGTTTGATT.................................................................................................................................................................................................................................................................................. 21 0 1 3.00 3 3 0 0 0 0 0 0 0 0 0 0
.......................................................TGTTGCTTGATTGATGTTTGA.................................................................................................................................................................................................................................................................................... 21 0 1 3.00 3 3 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................................................................................................................GGCTAAAAAAGGTGTCGAGGT............................................. 21 1 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0
......................................................CTGTTGCTTGATTGATGTT....................................................................................................................................................................................................................................................................................... 19 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................................................................................................................................ACTGCTGCATCTTCGACTTTT....................... 21 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0
.......................................................TGTTGCTTGGTTGATGTTTGA.................................................................................................................................................................................................................................................................................... 21 1 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0
......................................................CTGTTGCTTGGTTGATGTTTG..................................................................................................................................................................................................................................................................................... 21 1 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................................................................................................................TGTGGCTAAAGAAGGTGTCGA................................................ 21 1 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0
.................................................................TTGATGTTTGATTTTTCATAT.......................................................................................................................................................................................................................................................................... 21 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0
................................................................................................ATCACAGATCACAGAGTATAA........................................................................................................................................................................................................................................... 21 0 1 2.00 2 0 2 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................................................................................................................TGTGGCTAAAAAAGGTGTCGAG............................................... 22 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................................................................TTGTGGGTTGGATAGCGTGGT............................................................................... 21 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
..............................CGGCGTGATTCTTTTAGGAACAA........................................................................................................................................................................................................................................................................................................... 23 3 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0
..........................................................TGCTTGATTGATGTTTGA.................................................................................................................................................................................................................................................................................... 18 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
...............................................................................................................GTATAAGAAAAGTCAAGAAT............................................................................................................................................................................................................................. 20 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
...........................................................GCTTGATTGATGTTTGATTTTTC.............................................................................................................................................................................................................................................................................. 23 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................................................................................................................GGCTAAGGAAGGTGTCGAGAT............................................. 21 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
................................................................ATTGATGTTTGGTTTTTCATA........................................................................................................................................................................................................................................................................... 21 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
....................................................................................................CAGATCACAGAGTATAAGAAA....................................................................................................................................................................................................................................... 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
......................................................................................CACGAGTTAGATCACAGATC...................................................................................................................................................................................................................................................... 20 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
TTAATTATCAAGCATAACGAT........................................................................................................................................................................................................................................................................................................................................... 21 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................................................................................................ATTGTGGCTAAAAAAGGTGTC.................................................. 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................................................................................................GTGGCTAAAAAAGGTGTCGAG............................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
..............................................TGACCAATCTGTTGCTTGAT.............................................................................................................................................................................................................................................................................................. 20 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
......................................................CTGTTGCTTGATTGATGTTTG..................................................................................................................................................................................................................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................................................................................................TTGTGGCTAAAAAAGGTGTCGA................................................ 22 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................................................................................................................................AACTGCTGCATCTTCGACTTT........................ 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
.....................................................................TGTTTGATTTTTCATATCACG...................................................................................................................................................................................................................................................................... 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................................................................................................................TGTGGCTAGAAAAGGTGTCG................................................. 20 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................................................................................................................GAAAAAAGGTGTCTAGATAAC.......................................... 21 2 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0
.........................................................................................................................................................................ATTAACAGAGTATGAATGTTT.................................................................................................................................................................. 21 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................................................................................................................................TATTGTGGCTAGGAAAGGTGTC.................................................. 22 3 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................................................................................................................ATTGGCTAAAAAAGGTGTCGAG............................................... 22 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
.......................ATGGCCACGGCGTAATTGTT..................................................................................................................................................................................................................................................................................................................... 20 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
.......................................................TGTTGCTTGATTGATGTTTGGT................................................................................................................................................................................................................................................................................... 22 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................................................................................................................TGGCTAAAAAAGGTGTCGAGAT............................................. 22 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
..........................GCCACGGCGTGATTGTTTTA.................................................................................................................................................................................................................................................................................................................. 20 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0
............................................................................................................CGAGTATCAGAAAACTCAAGAA.............................................................................................................................................................................................................................. 22 3 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0
..........................GCCACGGCGTAATTGTTTTA.................................................................................................................................................................................................................................................................................................................. 20 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
....................TTTATGGCCACGGCGTAATTG....................................................................................................................................................................................................................................................................................................................... 21 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................................................................................................................................GGTTGTGGCTAAAAAAGGTGTC.................................................. 22 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................................................................................................ATTGTGGATAAAAAAGGTGT................................................... 20 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................TAACAGAGTATGAATGTTTAT................................................................................................................................................................ 21 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................................................................................................TTGTGGCTAAAAAAGGTGTC.................................................. 20 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
...............................................................................................................GTATAAGAAAAGTCAAGAATT............................................................................................................................................................................................................................ 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
....................TTTATGGCCACGGCGTAAT......................................................................................................................................................................................................................................................................................................................... 19 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
.......................ATGGCCACGGCGTAATTGTTT.................................................................................................................................................................................................................................................................................................................... 21 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
....................TTTATGGCCACGGCGTAATT........................................................................................................................................................................................................................................................................................................................ 20 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
............................................................CTTGATTGATGTTTGATTTTT............................................................................................................................................................................................................................................................................... 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................................................................................................GCGGCTAAAAAAGGTGTCGAG............................................... 21 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
.............................................................................................TAGATCACAGATCACAGAGTA.............................................................................................................................................................................................................................................. 21 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0
........................................................................................................................................................................................................................................................................................AATTGTGGCTAAAAAAGGTGTC.................................................. 22 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
......................................................TTTTTGCTTGATTGATGTTTGATT.................................................................................................................................................................................................................................................................................. 24 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
.............ATAACGATTTATGGCCACGGC.............................................................................................................................................................................................................................................................................................................................. 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
...........................................................GCTTGATTGATGTTTGATTTTC............................................................................................................................................................................................................................................................................... 22 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................................................................................................................TGGCTAAAAAAGGTGTCGAG............................................... 20 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................................................................................................CTGTGGCTAAGAAAGGTGTCGA................................................ 22 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................................................................................................TTGTGGCTAAAAAAGGTGT................................................... 19 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................................................................................TTGGGTTGGGTAGCGTGGTTA............................................................................. 21 2 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................................................................................................................ATTGGCTAAAAAAGGGGTCGAG............................................... 22 3 4 0.25 1 1 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................................................................................................CTAAGATTGTGGCTATGAAA........................................................ 20 3 5 0.20 1 0 0 1 0 0 0 0 0 0 0 0
.......................................................................................ACGAGTTAGAGCACA.......................................................................................................................................................................................................................................................... 15 1 6 0.17 1 0 0 0 0 0 0 1 0 0 0 0
...........................................................................................................................................................................GATCAGATGATGAATGTTTA................................................................................................................................................................. 20 3 7 0.14 1 0 0 0 0 0 0 0 0 1 0 0
..............................................................................................................................................................................................................................................................................................GGCTGAAGAAGGTGTCGAGGT............................................. 21 3 7 0.14 1 1 0 0 0 0 0 0 0 0 0 0
...............................................................................................................TTATAAGAAAAGTCAACAAT............................................................................................................................................................................................................................. 20 2 7 0.14 1 0 0 0 0 0 0 1 0 0 0 0
...................................TGATTTCTTTAGGACCAATC......................................................................................................................................................................................................................................................................................................... 20 3 8 0.13 1 0 0 0 0 0 0 1 0 0 0 0
..................................................................................................................................................................................................AACTGGACAACGAGGTAGGT.......................................................................................................................................... 20 3 8 0.13 1 1 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................................................ACAGGAGCTAAGATCTTTTGA.................................................................................................................... 21 3 8 0.13 1 0 0 0 0 0 0 0 1 0 0 0
........................................................GTTGGTCGATTGGTGTTTGAT................................................................................................................................................................................................................................................................................... 21 3 9 0.11 1 0 0 0 0 0 0 0 1 0 0 0
...................................................................................................................................................................................................................................................................................................AAAAAGCTGTCGAGA.............................................. 15 1 20 0.10 2 0 0 0 0 0 0 0 0 0 2 0
.................................................................................................................................................................................................................................................................................................AAAAAAAGGTGTCGGGAT............................................. 18 2 11 0.09 1 0 0 0 1 0 0 0 0 0 0 0
........................................................................................................................................................................AATTATCAGAGGGTGGATG..................................................................................................................................................................... 19 3 15 0.07 1 0 0 0 0 0 0 1 0 0 0 0
.....................................................................................................................................................................................................AGTAAAACGAGGCAAGTAT........................................................................................................................................ 19 3 20 0.05 1 0 0 0 0 0 0 0 0 0 0 1
...........................................................................................................................................................................................................ACGAGTTAAGTAACAATA................................................................................................................................... 18 2 20 0.05 1 0 0 0 1 0 0 0 0 0 0 0
.............................................................................................................................AGAAATTTTCAGAATCCATT............................................................................................................................................................................................................... 20 3 20 0.05 1 0 0 0 1 0 0 0 0 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim2 3l:6810574-6810925 - dsi_12576 AATTAATAGTTCTTATTGCTAAATACCGGTGCCGCACTAACAAAATACTGGTTAGACAACGAACTAACTACAA----ACTAAAAAGTA-TAGTGCTCAATCTAGTG-----TCTAGTGTCTCATATTCTTTTCAGTTCTTAAAAGT-GT---------------TAGGTAAGTTTA-AATATTTATTTTTATATATTAATT----GTCT-CCTACT---TACAAATATTTTGACATTTTGCTCCATTCAT-TGTGATCGTTTCTAGAAAACTCAATCGATGTTTCCAGAAAACCCAACCTATCG-AACCAATCGATACTAACACCGATTTTTTCCACAGCTCT------ATTGACGACGTAGAAGC----------TGAA-AAAAT--TGTGGAGTGA----AAAA-TTGT-AA
droSec2 scaffold_2:6875605-6875953 - AATTAATAGTTCTTATTGCTAATTACCGGTAACGCATTAACAAAATACTGGTTAGACAACGAACTAACTACAA----ACTAAAAAGTA-TAGTGCTCAATCTA--------AATAGCGTCTCATATTCTTTTCAGTTCTTAAAAGT-GT---------------TAGATACGTTTA-AATATTTATTTTTATATATTAATT----GTCT-CCTACT---TACAAATATTTTGGCATTTTGCTCCATTCAT-TGTGATCGTTTCTAGAAAACTCAATCGATGTTTCCAGAAAACCCAACCTATCG-AACCAATCGATACTAACACCGAATTTTTCCACAGCTCT------ATTGACGACGTAGAAGC----------TGAA-AAAAT--TGTGGAGTGA----AAAA-TTGT-AA
dm3 chr3L:6948547-6948915 - AATTAATAGTTCTTATTGTTAATTACCGGTGCCGCATTAAAAAAATACTGGTTAGACAACGAAGTAACTACAA----ACTAGCAACCA-TAGTGCTCTA--AAGTGCTCTTAATAGTGTTCCATATTCTTTTCAGTTATTATTTTT-ATTTAATTTGTTATTATTAGAAACGTTCACAATAATTATT--TATATATTAAAA----GTTT-CCTACT---AACAAATATTTTGACATTTTTCCCTATTCGT-TGTGATCGTTTCTAGAAAATTCAATCGATGTTTCCAGAAAACCTAACCTATCG-AACCAATCGATATTAACACCGATTTTTTCCACAGCTCT------ATTGACGACGTAGAAGC----------TGAA-AAAAT--TGTGGAGTGA----AAAA-TTGT-AA
droEre2 scaffold_4784:4410027-4410387 + AATTAATAGTTCC-GCAGTTAATTACCGGCGACGTCTTAACAAAATACTGGTTAGAGCACTAAC--ACGAATAACAAAGAAACCTGCG-TAGGGCTCAAGCGA--------AATATTATACGATAT-CTTTTCAGTAATTAAAAGT-GT---------------TAAATATATTCAAAATAATAATTTATAAATAATAATATAGTGTTTGGCAATTGAAAACAAATATTTTGTCATTGCTTCCTTTACATTTGTCATCGGCCCTGGAAAACTCAATCGATGTTTCCAGAAAACTCAACCAATCG-AACCAATCGATATTAACACCGATTTTTTCCACAGCTCT------ATTGACGACGTAGAAGC----------AAAAAAAAAT--TGTGGAGTGA----AAAA-TTGTGAA
droYak3 3L:7531663-7532008 - GATTAATAGTTCTTGTTGTTAGTTACCGGCGCCGCTATAACCAAATACTGGTTAGACAACTAA--AACCAGAAATACAGAAATCAGTGCTAGTGCTCAACTTA--------AATATTATCGGATATT-TCTTAAGTAATTAAAAATTAT---------------TAATTATTTATA-----AATACT--TATAAATTAT--------TTGGCAATT---AACAAAAAGTTTGACATTTATTCCTGTACATTTACCATCGGCCCTTGAAAACTCTATCGATGTTTCCAGAAAACTCAACCAATCGGAAGCAATCGATATTAACACCGATTTTTTCCACAGCTCT------ATTGACGACGTAGAAGC----------TAAA-AAAAT--TGTGGAGTGA----AAAA-TTGTGAA
droEug1 scf7180000409711:4509535-4509588 - A-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGACGTAGAAAATAGACGTATTGAAAAAAAAT--TGTGGAGTGA----AAAA-TTGTTAA
droBia1 scf7180000302193:4516452-4516496 - T--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGACGACGTAGGAGC----------TGAA-AAAAT--TGTGGAGTGA----AAAA-TTGA-AA
droTak1 scf7180000415809:919148-919216 - T-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTTCACATCACTACTTTTACTGACGACGTAG-AGC----------TGAA-AAAAT--TGTAAAAAGTGTGAAAAA-TTGC-AA
droEle1 scf7180000491193:1813712-1813760 - T----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TT------AGTGACGACGTAGGAGC----------TGGA--AAAT--TGCTAAGTGA----AAAA-TTGTGAA
droRho1 scf7180000780183:69739-69787 - T----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TT------ATTGACGACGTAGGAGC----------TGGA--AAAT--TGCTAAGTGA----AAAA-TTGTGAA
droFic1 scf7180000453929:649399-649448 + T----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TT------ATTGACGACGTAGGA-------AA-GTTGGA--AAAT--TGTCAAGTGA----AAAA-ATTA-AA
droKik1 scf7180000302510:692102-692142 - -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GACGTAGGAGC----------TGGA--AAAT--TGTCAAGTGAA--AAAAA-TTAT-AA
droAna3 scaffold_13337:19956902-19956950 + T----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TT------ATTGACGACGTAGGAGC----------TGGA--AAAT--TGTGAAGTGA----AAAAATTAA-AA
droBip1 scf7180000395866:52903-53002 - T-------------------------------------------------------------------------------------------------------------------------------------------------------------------TAAATAATTATA-AATATATAGTTTGATATATTAATA----GTTT-ATTAAT---AGTATGATTAATATTAATAGTTTGAATATAT-GATGAATGTTTATTTTAAACTC---------------------------------------------------------------------------------------------------------------------------------------------
dp5 XR_group8:4963483-4963517 + G-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGGC----------TGGA--AAATTTCGTGAAGTGA----AAAC-GCAG-AA
droPer2 scaffold_38:723747-723781 - G-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGGC----------TGGA--AAATTTCGTGAAGTGA----AAAC-GCAG-AA
droVir3 scaffold_13049:7311269-7311381 - AAACTAT---------------------------------------------------------------------------------------------------------------------------------------------------------------------CGAG-AATGTTCGATACG-----------------------------------------------------------------------------------------------------------------------AAGCATGAATAACCCTACAGTTTCTTTCATCTCT------AATACTGACGTAGGTGCAA---AA-CCTGGA--AAAT--TGTAAGGTGAAGTGAAAA-TTGC-AA
droMoj3 scaffold_6680:5568479-5568560 - ACTAA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCCAGCAGTTTCTTTCATCTCT------AATACTGACGTAGGTGCAA---AA-CCTGGA--AAAT--TGTAAGGTGAAGTGAAAA-TTGC-AA

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
AATTAATAGTTCTTATTGCTAAATACCGGTGCCGCACTAACAAAATACTGGTTAGACAACGAACTAACTACAA----ACTAAAAAGTA-TAGTGCTCAATCTAGTG-----TCTAGTGTCTCATATTCTTTTCAGTTCTTAAAAGT-GT---------------TAGGTAAGTTTA-AATATTTATTTTTATATATTAATT----GTCT-CCTACT---TACAAATATTTTGACATTTTGCTCCATTCAT-TGTGATCGTTTCTAGAAAACTCAATCGATGTTTCCAGAAAACCCAACCTATCG-AACCAATCGATACTAACACCGATTTTTTCCACAGCTCT------ATTGACGACGTAGAAGC----------TGAA-AAAAT--TGTGGAGTGA----AAAA-TTGT-AASizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
.............................................................................................................................................................................................................................................................................................................................................................ATTGACGACGTAGAAGC----------TGAA-A................................2215.00501400000000000000
....................................................................................................................................................................................................................................................................................................................................................................ACGTAGAAGC----------TGAA-AAAAT--..........................1913.00330000000000000000
..................................................................................................................................................................................................................................................CCATTCAT-TGTGATCGTTTCT......................................................................................................................................................2113.00300000000000003000
.................................................................................................................................................................................................................................................TCCATTCAT-TGTGATCGTTTC.......................................................................................................................................................2113.00300000000000003000
.....................................................................................................................................................................................................................................................................................................................................................................CGTAGAAGC----------TGAA-AAAAT--..........................1812.00220000000000000000
.............................................................................................................................................................................................................................................................................................................................................................ATTGACGACGTAGAAGC----------T.....................................1812.00201100000000000000
.............................TGCCGCACTAACAAAATACTG............................................................................................................................................................................................................................................................................................................................................................................2112.00202000000000000000
...............................................................................................................................................................................................................................................................................................................................................................TGACGACGTAGAAGC----------TGAA-A................................2012.00210100000000000000
.............................................................................................................................................................................................................................................................................................................................................................................C----------TGAA-AAAAT--TGTGGAGTGA----A...........2112.00200000000000002000
...............................................................................................................................................................................................................................................................................................................................................................TGACGACGTAGAAGC----------TGA...................................1812.00200200000000000000
......................................................................................................................................................................................................................................................TCAT-TGTGATCGTTTCTAGAAAA................................................................................................................................................2312.00200000000000002000
................................................................................................CAATCTAGTG-----TCTAGTGTC......................................................................................................................................................................................................................................................................................................1911.00100001000000000000
..........................................................................................................................................................................................................................................................................................................................................TTTCCACAGCTCT------ATTGAC...........................................................1911.00101000000000000000
...............................................CTGGTTAGACAACGAACTAAC..........................................................................................................................................................................................................................................................................................................................................................2111.00100001000000000000
.........................................................................................................................................................................................................................................................................................................................................TTTTCCACAGCTCT------ATTGA............................................................1911.00100001000000000000
................TGCTAAATACCGGTGCCGCAC.........................................................................................................................................................................................................................................................................................................................................................................................2111.00100001000000000000
......................................................................................................................................................................................................................................................................................................................................................T------ATTGACGACGTAGAAGC----------T.....................................1911.00101000000000000000
...................................................................................................................................................................................................................................................................................................................................................CTCT------ATTGACGACGTAGA...................................................1811.00100000001000000000
...............................................................................................................................................................................................................................................................................................................................................................TGACGACGTAGAAGC----------TGAA-AA...............................2111.00101000000000000000
..............................................................................................................................................................................................................................................................................................................................................................TTGACGACGTAGAAGC----------TGAA-A................................2111.00110000000000000000
...........................................................................................................................................................................................................................................................................................................................................TTCCACAGCTCT------ATTGACGAC........................................................2111.00100000000000001000
........GTTCTTATTGCTAAATACC...................................................................................................................................................................................................................................................................................................................................................................................................1911.00100001000000000000
.............................................................................................................................................................................................................................................................................................................................................................ATTGACGACGTAGAAGC----------TGAA-AAAAA--..........................2611.00100000000000001000
...............................................................................................................................................................................................................................................................................................................................................................TGACGACGTAGAAGC----------TGAA-AAAAT--TG........................2611.00100000001000000000
....................................................................................................................................................................................................................................................ATTCAT-TGTGATCGTTTCTAGAAAA................................................................................................................................................2511.00100100000000000000
................................................................................................................................................................................................................................................................................................................................................................GACGACGTAGAAGC----------TGAA-AA...............................2011.00100000001000000000
.......................................................................................A-TAGTGCTCAATCTAGTG-----TCT............................................................................................................................................................................................................................................................................................................2111.00100001000000000000
.................................................................................AAAAGTA-TAGTGCTCAATCT........................................................................................................................................................................................................................................................................................................................2011.00100000000000001000
..........................................AAATACTGGTTAGACAACGAAA..............................................................................................................................................................................................................................................................................................................................................................2211.00100000000000001000
..................................................................................................................................................................................................................................................................................................................................................................CGACGTAGAAGC----------TGAA-AAAA.............................2011.00101000000000000000
.............................................................................................................................................................................................................................................................................................................................................................ATTGACGACGTAGAAGC----------TGAA-AA...............................2311.00101000000000000000
...........................................................................................GTGCTCAATCTAGTG-----TCTAGT.........................................................................................................................................................................................................................................................................................................2111.00100001000000000000
......................................................................................TA-TAGTGCTCAATCTAGTG-----TCT............................................................................................................................................................................................................................................................................................................2211.00100001000000000000
.............................................................................................................................................................................................................................................................................................................................................................ATTGACGACGTAGAAGC----------TGAA-AAAAT--T.........................2711.00100100000000000000
.............................................................................................................................................................................................................................................................................................................................................................................C----------TGAA-AAAAT--TGTGGAGTGA----AAAA-.......2411.00100000010000000000
droSec2
AATTAATAGTTCTTATTGCTAATTACCGGTAACGCATTAACAAAATACTGGTTAGACAACGAACTAACTACAA----ACTAAAAAGTA-TAGTGCTCAATCTA--------AATAGCGTCTCATATTCTTTTCAGTTCTTAAAAGT-GT---------------TAGATACGTTTA-AATATTTATTTTTATATATTAATT----GTCT-CCTACT---TACAAATATTTTGGCATTTTGCTCCATTCAT-TGTGATCGTTTCTAGAAAACTCAATCGATGTTTCCAGAAAACCCAACCTATCG-AACCAATCGATACTAACACCGAATTTTTCCACAGCTCT------ATTGACGACGTAGAAGC----------TGAA-AAAAT--TGTGGAGTGA----AAAA-TTGT-AASizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
...............................................................................................................................................................................................................................................................................................................................................................................................AAT--TGTGGAGTGA----AAAA-T......1812.0020002
.............................................................................................................................................................................................................................................................................................................................................................................C----------TGAA-AAAAT--TGTGGAGTGA----AAAA-TT.....2611.0010100
.................................................................................................................................TTTCAGTTCTTAAAAGT-GT---------------TA........................................................................................................................................................................................................................................................2111.0010100
.........................................................................................................................................................................................................................................................................................................................................................................GAAGC----------TGAA-AAAAT--TGTGGAGTG.................2311.0010010
.........................................................................................................................................................................................................................................................................................................................................TTTTCCACAGCTCT------ATTGACGACGTA.....................................................2611.0010010
....................................................................................................CTA--------AATAGCGTCTCATATTCT.............................................................................................................................................................................................................................................................................................2111.0010100
......................................................................................................................................................................................................................................................................................................................................................T------ATTGACGACGTAGAAGC----------......................................1811.0010010
................................................................................................................................................................................................................................................................................................................................................................................................AT--TGTGGAGTGA----AAAA-TT.....1811.0010010
...........................................................................................................................................................................................................................................................................................................................................................................................A-AAAAT--TGTGGAGTGA----AAAA-T......2111.0010001
.............................................................................................................................................................................................................................................................................................................................................................................................AAAAT--TGTGGAGTGA----AAA.........1811.0010001
..............................................................................................................................................................................................................................................................................................................................................................TTGACGACGTAGAAGC----------TGAA-AAAAT--..........................2511.0010010
.........................................................................................................................................................................................................................................................................................................................................TTTTCCACAGCTCT------ATTGACGTA........................................................2311.0010100
....................................................................................................................................................................................................................................................................................................................................................................ACGTAGAAGC----------TGAA-AAAAT--TGTGGAG...................2611.0010010
................................................................................................................................................................................................................................................................................................................................................................GACGACGTAGAAGC----------TGAA-AAAAT--TG........................2511.0010010
.............................................................................................................................................................................................................................................................................................................................................................ATTGACGACGTAGAAGC----------TGAA-AAAAT--TG........................2811.0010100
............................................................................................................................................................................................................................................................................................................................................................................GC----------TGAA-AAAAT--TGTGGAGT..................1911.0010010
................................................................................................................................................................................................................................................................................................................................ACACCGAATTTTTCCACAGCT.........................................................................2111.0010010
dm3
AATTAATAGTTCTTATTGTTAATTACCGGTGCCGCATTAAAAAAATACTGGTTAGACAACGAAGTAACTACAA----ACTAGCAACCA-TAGTGCTCTA--AAGTGCTCTTAATAGTGTTCCATATTCTTTTCAGTTATTATTTTT-ATTTAATTTGTTATTATTAGAAACGTTCACAATAATTATT--TATATATTAAAA----GTTT-CCTACT---AACAAATATTTTGACATTTTTCCCTATTCGT-TGTGATCGTTTCTAGAAAATTCAATCGATGTTTCCAGAAAACCTAACCTATCG-AACCAATCGATATTAACACCGATTTTTTCCACAGCTCT------ATTGACGACGTAGAAGC----------TGAA-AAAAT--TGTGGAGTGA----AAAA-TTGT-AASizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
...............................................................................................................................................................................................................................................................................................................................................................................................AAT--TGTGGAGTGA----AAAA-T......18118.00180000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003000010000120000000000010000000000000010100000000100000000100100000000000000000000112100
.....................................................................................................................................................................................................................................................................................................................................GATTTTTTCCACAGCTCT------A................................................................19113.00130000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100030100000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000010000000000000000000000000000000101300000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................ATTGACGACGTAGAAGC----------TG....................................19111.00110000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000001000000000000000000000000000000000000020000000000000000000000000000000000000000002100010110000000000010
...............................................................................................................................................................................................................................................................................................................................................................................................AAT--TGTGGAGTGA----AAAA-TTG....2019.0090000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003000001000000000000000000000000000000000000010000000000000000000000000000000000000000001000000000000100020000000000000000
..................................................................................................................................................................................................................................................................................................................................................................CGACGTAGAAGC----------TGAA-AAAAT--TGT.......................2418.0080000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000134000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................ACGTAGAAGC----------TGAA-AAAAT--TGTGGAGT..................2718.0080000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000017000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................ACGTAGAAGC----------TGAA-AAAAT--TGT.......................2217.0070000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000510000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................ATTGACGACGTAGAAGC----------TGAA-AA...............................2317.0070000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001020004000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................AGAAGC----------TGAA-AAAAT--TGTGGAG...................2216.0060000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000002100000000000000000000000000000000010
....................................................................................................................................................................................................................................................................................................................................................................ACGTAGAAGC----------TGAA-AAAAT--..........................1916.0060000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000400000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................AGAAGC----------TGAA-AAAAT--TGT.......................1815.0050000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................ATTGACGACGTAGAAGC----------TGAA-A................................2215.0050000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................ACAGCTCT------ATTGACGACGTAGAAGC----------......................................2514.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002001000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................CGACGTAGAAGC----------TGAA-AAAA.............................2014.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................GACGTAGAAGC----------TGAA-AAAA.............................1914.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000001000000000000000000000000000000000000000000000000000000000000000001100000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................GACGACGTAGAAGC----------TGAA-AAAAT--TGTG......................2714.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001001000000000000000000000000000010000000000000000010000000000000000
....................................................................................................................................................................................................................................................................................................................................................................ACGTAGAAGC----------TGAA-AAAAT--TGTGG.....................2414.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000310000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................CGTAGAAGC----------TGAA-AAAAT--TGTGG.....................2314.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................CTCT------ATTGACGACGTAGAAGC----------TGAA-.................................2514.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000030000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................GAAGC----------TGAA-AAAAT--TGTGGAG...................2114.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000030000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................GCTCTTAATAGTGTTCCA...................................................................................................................................................................................................................................................................................................1814.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000021000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................ATTGACGACGTAGAAGC----------T.....................................1814.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000010000000010000000000000000100000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................GACGACGTAGAAGC----------TGAA-AAA..............................2114.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................AAT--TGTGGAGTGA----AAAA-TTGT-A.2213.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000011000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................TGAA-AAAAT--TGTGGAGTG.................1813.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000011000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100
...............................................................................................................................................................................................................................................................................................................................................................TGACGACGTAGAAGC----------TGAA-AA...............................2113.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000102000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................GACGACGTAGAAGC----------TGAA-AAAA.............................2213.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000100000000000000000000000000000001000
.....................................................................................................................................................................................................................................................................................................................................................................CGTAGAAGC----------TGAA-AAAAT--TGTGGAGTGA----............2813.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000300000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................ATTGACGACGTAGAAGC----------TGAA-.................................2113.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000100000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................CGACGTAGAAGC----------TGAA-AAA..............................1913.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000110000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................TTGACGACGTAGAAGC----------TG....................................1813.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000010100000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................AT--TGTGGAGTGA----AAAA-TTG....1913.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000001000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................T------ATTGACGACGTAGAAGC----------TGAA-AA...............................2413.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000010001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................AGAAGC----------TGAA-AAAAT--TGTGGAGT..................2313.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................GC----------TGAA-AAAAT--TGTGGAGTGA----............2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................CAGCTCT------ATTGACGACGTAGAAGC----------......................................2412.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................AT--TGTGGAGTGA----AAAA-TTGT-AA2212.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000100000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................ATTGACGACGTAGAAGC----------TGAA-AAAAT--T.........................2712.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................GAA-AAAAT--TGTGGAGTGA----AAAA-TTG....2512.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000010000000000000000
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droEre2
AATTAATAGTTCC-GCAGTTAATTACCGGCGACGTCTTAACAAAATACTGGTTAGAGCACTAAC--ACGAATAACAAAGAAACCTGCG-TAGGGCTCAAGCGA--------AATATTATACGATAT-CTTTTCAGTAATTAAAAGT-GT---------------TAAATATATTCAAAATAATAATTTATAAATAATAATATAGTGTTTGGCAATTGAAAACAAATATTTTGTCATTGCTTCCTTTACATTTGTCATCGGCCCTGGAAAACTCAATCGATGTTTCCAGAAAACTCAACCAATCG-AACCAATCGATATTAACACCGATTTTTTCCACAGCTCT------ATTGACGACGTAGAAGC----------AAAAAAAAAT--TGTGGAGTGA----AAAA-TTGTGAASizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
.................................................................................................................................................................................................................................................................................................................................................................ACGACGTAGAAGC----------AAAAAAAA..............................2112.0020200000
...............................................................................................................................................................................................................................................................................................................................................................TGACGACGTAGAAGC----------AAA...................................1812.0020000020
...........................................AATACTGGTTAGAGCACTAA...............................................................................................................................................................................................................................................................................................................................................................2011.0010000010
...........................................................................................................................................................................................................................................................................................................................................TTCCACAGCTCT------ATTGACGACGTA.....................................................2411.0010001000
........................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAT--TGTGGAGT..................1811.0010001000
...............................................................................................................................................................................................................................................................................................................................................................................................AAT--TGTGGAGTGA----AAAA-TT.....1911.0010000100
......................................................................................................................................................................................................................................................................................................................................................T------ATTGACGACGTAGAAGC----------A.....................................1911.0010000010
.............................................................................................................................................................................................................................................................................................................................................................................................AAAAT--TGTGGAGTGA----AAAA-TTGTGA.2511.0010000100
.............................................................................................................................................................................................................................................................................................................................................................ATTGACGACGTAGAAGC----------AAAAAA................................2311.0010000100
.........................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAT--TGTGGAGTGA----............1911.0010000010
............................................................................................................................................................................................................................................................................................................................................TCCACAGCTCT------ATTGACGACGTAGAA..................................................2611.0010001000
.................GTTAATTACCGGCGACGTC..........................................................................................................................................................................................................................................................................................................................................................................................1911.0010000100
droYak3
GATTAATAGTTCTTGTTGTTAGTTACCGGCGCCGCTATAACCAAATACTGGTTAGACAACTAA--AACCAGAAATACAGAAATCAGTGCTAGTGCTCAACTTA--------AATATTATCGGATATT-TCTTAAGTAATTAAAAATTAT---------------TAATTATTTATA-----AATACT--TATAAATTAT--------TTGGCAATT---AACAAAAAGTTTGACATTTATTCCTGTACATTTACCATCGGCCCTTGAAAACTCTATCGATGTTTCCAGAAAACTCAACCAATCGGAAGCAATCGATATTAACACCGATTTTTTCCACAGCTCT------ATTGACGACGTAGAAGC----------TAAA-AAAAT--TGTGGAGTGA----AAAA-TTGTGAASizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
.........................................................................................................................................................................................................................................................................................................................................TTTTCCACAGCTCT------ATTGACGACGT......................................................2512.00200100010000
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..........................................................................................................................................................................................................................................................................................................................................................................................AA-AAAAT--TGTGGAGTGA----AAA.........2011.00100000010000
......................................................................................................................................................................................................................................................................................................................................................T------ATTGACGACGTAGAAGC----------T.....................................1911.00110000000000
........................................................................................................................................................................................................................................................................................................................................................................................TAAA-AAAAT--TGTGGAGTGA----AAAA-T......2411.00100000010000
...........................................................................................................................................................................................................................................................................................................................................................................................A-AAAAT--TGTGGAGTGA----AAAA-TT.....2211.00100000010000
........................................................................................................................................................................................................................................................................................................................................................................................TAAA-AAAAT--TGTGGAGTGA----AAA.........2211.00100000010000
droEug1
A-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGACGTAGAAAATAGACGTATTGAAAAAAAAT--TGTGGAGTGA----AAAA-TTGTTAASizeHit CountTotal NormTotal
No Reads
droBia1
T--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGACGACGTAGGAGC----------TGAA-AAAAT--TGTGGAGTGA----AAAA-TTGA-AASizeHit CountTotal NormTotal
No Reads
droTak1
T-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTTCACATCACTACTTTTACTGACGACGTAG-AGC----------TGAA-AAAAT--TGTAAAAAGTGTGAAAAA-TTGC-AASizeHit CountTotal NormTotal
No Reads
droEle1
T----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TT------AGTGACGACGTAGGAGC----------TGGA--AAAT--TGCTAAGTGA----AAAA-TTGTGAASizeHit CountTotal NormTotal
No Reads
droRho1
T----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TT------ATTGACGACGTAGGAGC----------TGGA--AAAT--TGCTAAGTGA----AAAA-TTGTGAASizeHit CountTotal NormTotal
No Reads
droFic1
T----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TT------ATTGACGACGTAGGA-------AA-GTTGGA--AAAT--TGTCAAGTGA----AAAA-ATTA-AASizeHit CountTotal NormTotal
No Reads
droKik1
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GACGTAGGAGC----------TGGA--AAAT--TGTCAAGTGAA--AAAAA-TTAT-AASizeHit CountTotal NormTotal
No Reads
droAna3
T----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TT------ATTGACGACGTAGGAGC----------TGGA--AAAT--TGTGAAGTGA----AAAAATTAA-AASizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
................................................................................................................................................................................................................................................................................................................................................................GACGACGTAGGAGC----------TGGA--AA..............................2011.001100000
...............................................................................................................................................................................................................................................................................................................................................................TGACGACGTAGGAGC----------TGGA--AA..............................2111.001100000
.............................................................................................................................................................................................................................................................................................................................................................ATTGACGACGTAGGAGC----------TGGA--AAAT--T.........................2611.001000001
................................................................................................................................................................................................................................................................................................................................................................GACGACGTAGGAGC----------TGGA--................................1811.001100000
droBip1
T-------------------------------------------------------------------------------------------------------------------------------------------------------------------TAAATAATTATA-AATATATAGTTTGATATATTAATA----GTTT-ATTAAT---AGTATGATTAATATTAATAGTTTGAATATAT-GATGAATGTTTATTTTAAACTC---------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
dp5
G-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGGC----------TGGA--AAATTTCGTGAAGTGA----AAAC-GCAG-AASizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
................................................................................................................................................................................................................................................................................................................................................................................................ATTTCGTGAAGTGA----AAAC-G......1911.0010100000000
droPer2
G-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGGC----------TGGA--AAATTTCGTGAAGTGA----AAAC-GCAG-AASizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
...........................................................................................................................................................................................................................................................................................................................................................................................A--AAATTTCGTGAAGTGA----AAAC-GC.....2311.001000001
..........................................................................................................................................................................................................................................................................................................................................................................GGGC----------TGGA--AAATTTCGTGAAGTGA----AA..........2611.001010000
...............................................................................................................................................................................................................................................................................................................................................................................................AATTTCGTGAAGTGA----AAAC-GC.....2111.001000010
.................................................................................................................................................................................................................................................................................................................................................................................................TTTCGTGAAGTGA----AAAC-GCA....2011.001010000
G-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGGC----------TGGA--AAATTTCGTGAAGT..................2311.001000001
droVir3
AAACTAT---------------------------------------------------------------------------------------------------------------------------------------------------------------------CGAG-AATGTTCGATACG-----------------------------------------------------------------------------------------------------------------------AAGCATGAATAACCCTACAGTTTCTTTCATCTCT------AATACTGACGTAGGTGCAA---AA-CCTGGA--AAAT--TGTAAGGTGAAGTGAAAA-TTGC-AASizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
....................................................................................................................................................................................................................................................................................................................................................................................................TGTAAGGTGAAGTGAAAA-TTGC-A.2312.002000000000000000000000000000001000000000000000000000000000000010
.................................................................................................................................................................................................................................................................................................................................................ATCTCT------AATACTGACGTAGG...................................................2012.002001000000000000000000000000000100000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................AAT--TGTAAGGTGAAGTGAAAA-TTG....2411.001000000000000000000000000000000000000000000000000000000000000100
.......................................................................................................................................................................................................................................................................................................................................................................TAGGTGCAA---AA-CCTGGA--AAAT--T.........................2211.001000000000000000000000100000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................AAGGTGAAGTGAAAA-TTG....1811.001000000000000010000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................AT--TGTAAGGTGAAGTGAAA.........1911.001000000000000000000000000000000000001000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................ATACTGACGTAGGTGCAA---AA-CCTGGA--................................2611.001000000000000000000000010000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................GTAAGGTGAAGTGAAAA-TTGC-A.2211.001000000000100000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................GCAA---AA-CCTGGA--AAAT--TGTAAGGTGAA...............2711.001000000000000000000010000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................AAAT--TGTAAGGTGAAGTGAAAA-TTGC-A.2711.001000000000000000000000000000000000000000000000000000000000000010
..............................................................................................................................................................................................................................................................................................................................................................................................AAAT--TGTAAGGTGAAGTGAAAA-TTG....2511.001000000000000000000000000000000000000000000000000000000000000010
................................................................................................................................................................................................................................................................................................................................................................................................AT--TGTAAGGTGAAGTGAAAA-.......2011.001000000000000000000000000000000000000000000000000000000000000010
..................................................................................................................................................................................................................................................................................................................................................TCTCT------AATACTGACGTAGGTGC................................................2211.001001000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................AT--TGTAAGGTGAAGTGAAAA-TT.....2211.001000000000000000000000000000000000000000000000000000000000000010
..................................................................................................................................................................................................................................................................................................................................................................TGACGTAGGTGCAA---AA-CCTGGA--................................2211.001000000000000000000000000000000000001000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................AAT--TGTAAGGTGAAGTGAAA.........2011.001000000000000000000000000000000000010000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................AAT--TGTAAGGTGAAGTGAAAA-TTGC-A.2611.001000000000000010000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................ATACG-----------------------------------------------------------------------------------------------------------------------AAGCATGAATAACCCTA........................................................................................2211.001000000000000000000000000000010000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................TGTAAGGTGAAGTGAAAA-T......1911.001000000001000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................AT--TGTAAGGTGAAGTGAAAA-TTGC-..2411.001000000000000000000000000000000000000000000000000000000000000010
droMoj3
ACTAA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCCAGCAGTTTCTTTCATCTCT------AATACTGACGTAGGTGCAA---AA-CCTGGA--AAAT--TGTAAGGTGAAGTGAAAA-TTGC-AASizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
........................................................................................................................................................................................................................................................................................................................................................................................................AGGTGAAGTGAAAA-TTGC-..1811.001000010
...............................................................................................................................................................................................................................................................................................................................................................................................AAT--TGTAAGGTGAAGTGAA..........1911.001000001
.................................................................................................................................................................................................................................................................................................................................................................................................T--TGTAAGGTGAAGTGAAAA-TTGC-..2311.001000001
................................................................................................................................................................................................................................................................................................................................................................................................AT--TGTAAGGTGAAGTGAAAA-TTGC-A.2511.001000001

Generated: 05/18/2015 at 09:13 AM